00:39:23Started by upstream project "Trigger" build number 23500:39:23originally caused by:
00:39:23 Started by timer
00:39:23Running as SYSTEM
00:39:23Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
00:39:23The recommended git tool is: NONE
00:39:23No credentials specified
00:39:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
00:39:24Fetching changes from the remote Git repository
00:39:24 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
00:39:24Fetching upstream changes from https://github.com/ome/openmicroscopy.git00:39:24 > git --version # timeout=10
00:39:24 > git --version # 'git version 2.43.5'
00:39:24 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:26 > git rev-parse origin/develop^{commit} # timeout=10
00:39:26Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
00:39:26 > git config core.sparsecheckout # timeout=10
00:39:26 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
00:39:26Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
00:39:26 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
00:39:26Cleaning workspace
00:39:26 > git rev-parse --verify HEAD # timeout=10
00:39:26Resetting working tree
00:39:26 > git reset --hard # timeout=10
00:39:26 > git clean -fdx # timeout=10
00:39:27Copied 1 artifact from "OMERO-python-superbuild-build" build number 19000:39:27[OMERO-push] $ /bin/bash -xe /tmp/jenkins10592163199550073063.sh
00:39:27+ python3 -mvenv venv
00:39:29+ source /home/omero/workspace/OMERO-push/venv/bin/activate
00:39:29++ deactivate nondestructive
00:39:29++ '[' -n '' ']'
00:39:29++ '[' -n '' ']'
00:39:29++ '[' -n /bin/bash -o -n '' ']'
00:39:29++ hash -r
00:39:29++ '[' -n '' ']'
00:39:29++ unset VIRTUAL_ENV
00:39:29++ '[' '!' nondestructive = nondestructive ']'
00:39:29++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
00:39:29++ export VIRTUAL_ENV
00:39:29++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:29++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:29++ export PATH
00:39:29++ '[' -n '' ']'
00:39:29++ '[' -z '' ']'
00:39:29++ _OLD_VIRTUAL_PS1=
00:39:29++ PS1='(venv) '
00:39:29++ export PS1
00:39:29++ '[' -n /bin/bash -o -n '' ']'
00:39:29++ hash -r
00:39:29+ pip install -U pip
00:39:34Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
00:39:35+ pip install -U scc
00:39:35Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
00:39:35Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
00:39:35Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
00:39:35Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
00:39:35Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
00:39:35Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
00:39:35Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
00:39:35Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
00:39:35Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
00:39:35Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
00:39:35Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
00:39:35Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
00:39:35Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
00:39:35Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
00:39:35Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
00:39:35Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
00:39:35Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
00:39:35Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
00:39:35Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
00:39:35Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
00:39:35Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
00:39:35Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
00:39:35+ test -e src
00:39:35+ cd src
00:39:35++ git config github.user
00:39:35+ user=snoopycrimecop
00:39:35+ scc merge develop --no-ask --reset --shallow -S success-only
00:39:422024-10-04 00:39:42,067 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:39:422024-10-04 00:39:42,067 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:39:422024-10-04 00:39:42,067 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:39:422024-10-04 00:39:42,067 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:39:422024-10-04 00:39:42,068 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:39:422024-10-04 00:39:42,068 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:40:132024-10-04 00:40:13,319 [ scc.merge] INFO Repository: ome/openmicroscopy
00:40:132024-10-04 00:40:13,319 [ scc.merge] INFO Excluded PRs:
00:40:132024-10-04 00:40:13,319 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO Already up to date.
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO Merged PRs:
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6309 jburel 'add try block'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
00:40:132024-10-04 00:40:13,320 [ scc.merge] INFO
00:40:13+ cp etc/omero.properties etc/omero.properties.bak
00:40:13+ rm etc/omero.properties
00:40:13+ touch etc/omero.properties
00:40:13++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
00:40:13+ ne=249
00:40:13++ sed -n 1,249p etc/omero.properties.bak
00:40:13+ line='##
00:40:13## omero.properties
00:40:13## ----------------
00:40:13##
00:40:13## DO NOT EDIT!
00:40:13##
00:40:13##
00:40:13## Any of these properties can be altered by using `omero config`. MODIFYING
00:40:13## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:40:13## at compile time!
00:40:13##
00:40:13## For an overview of these properties, see
00:40:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:40:13##
00:40:13## Properties marked with "DEVELOPMENT" should not be used in production.
00:40:1300:40:13# Comma separated list of Ice transports available to clients. The default
00:40:13# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:40:13# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:40:13# will prevent all non-encrypted connections to the OMERO server.
00:40:13#
00:40:13# Additionally, there are two experimental values for using websockets:
00:40:13# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:40:13# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:40:13# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:40:13#
00:40:13# Note: When using websockets behind a web server like nginx, additional
00:40:13# configuration may be needed.
00:40:13omero.client.icetransports=ssl,tcp
00:40:1300:40:13# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:40:13# server
00:40:13omero.ports.prefix=
00:40:1300:40:13# The Glacier2 SSL port number to use
00:40:13omero.ports.ssl=4064
00:40:1300:40:13# The Glacier2 TCP port number to use (unencrypted)
00:40:13omero.ports.tcp=4063
00:40:1300:40:13# The Glacier2 WSS port number to use
00:40:13omero.ports.wss=4066
00:40:1300:40:13# The Glacier2 WS port number to use (unencrypted)
00:40:13omero.ports.ws=4065
00:40:1300:40:13# The IceGrid registry port number to use
00:40:13omero.ports.registry=4061
00:40:1300:40:13#############################################
00:40:13## JVM configuration
00:40:13##
00:40:13## Note: changes to the omero.jvmcfg properties
00:40:13## will *not* be reflected in OMERO.server
00:40:13## since they are defined in OMERO.py.
00:40:13#############################################
00:40:13## (For documentation only)
00:40:13# Memory strategy which will be used by default.
00:40:13# Options include: percent, manual
00:40:13omero.jvmcfg.strategy=percent
00:40:1300:40:13## (For documentation only)
00:40:13# Explicit value for the `-Xmx` argument, e.g.
00:40:13# "1g"
00:40:13omero.jvmcfg.heap_size=
00:40:1300:40:13## (For documentation only)
00:40:13# Explicit value for the MaxPermSize argument
00:40:13# to the JVM, e.g. "500M". Ignored for Java8+
00:40:13omero.jvmcfg.perm_gen=
00:40:1300:40:13## (For documentation only)
00:40:13# Toggles on or off heap dumps on OOMs. Default is "off".
00:40:13# The special value "tmp" will create the heap dumps in
00:40:13# your temp directory.
00:40:13omero.jvmcfg.heap_dump=
00:40:1300:40:13## (For documentation only)
00:40:13# Used only by the percent strategy. An integer between 0
00:40:13# and 100 which is the percent of active memory that will
00:40:13# be used by the service.
00:40:13omero.jvmcfg.percent=
00:40:1300:40:13## (For documentation only)
00:40:13# Contains other parameters which should be passed to the
00:40:13# JVM. The value of "append" is treated as if it were on
00:40:13# the command line so will be separated on whitespace.
00:40:13# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:40:13# results in two new arguments.
00:40:13# Note that when using `config set` from the command line
00:40:13# one may need to give a prior `--` option to prevent a value
00:40:13# starting with `-` from already being parsed as an option,
00:40:13# and values may need quoting to prevent whitespace or other
00:40:13# significant characters from being interpreted prematurely.
00:40:1300:40:13omero.jvmcfg.append=
00:40:1300:40:13## (For documentation only)
00:40:13# Manual override of the total system memory that
00:40:13# OMERO will *think* is present on the local OS (MB).
00:40:13# If unset, an attempt will be made to detect the actual
00:40:13# amount: first by using the Python library `psutil` and
00:40:13# if that is not installed, by running a Java tool. If
00:40:13# neither works, 4.0GB is assumed.
00:40:13omero.jvmcfg.system_memory=
00:40:1300:40:13## (For documentation only)
00:40:13# Suggestion for strategies as to the minimum memory
00:40:13# that they will use for calculating JVM settings (MB).
00:40:13omero.jvmcfg.min_system_memory=3414
00:40:1300:40:13## (For documentation only)
00:40:13# Suggestion for strategies as to the maximum memory
00:40:13# that they will use for calculating JVM settings (MB).
00:40:13omero.jvmcfg.max_system_memory=48000
00:40:1300:40:1300:40:13#############################################
00:40:13## Logging properties
00:40:13##
00:40:13## Note: changes to the default omero.logging values in
00:40:13## this file will *not* be reflected in OMERO.server
00:40:13## since they are defined in OMERO.py
00:40:13#############################################
00:40:1300:40:13## (For documentation only)
00:40:13# Relative server directory where the log files should be stored.
00:40:13omero.logging.directory=var/log/
00:40:1300:40:13## (For documentation only)
00:40:13# Whether the server log files should be rotated at a certain time
00:40:13# interval. If true, log files will be rolled over at midnight.
00:40:13# Otherwise, log files will be rolled over at a predetermined size,
00:40:13# see omero.logging.logsize for more information.
00:40:13omero.logging.timedlog=false
00:40:1300:40:13## (For documentation only)
00:40:13# If omero.logging.timedlog is false or unset, specifies the
00:40:13# maximum size of the server log files in bytes above which a
00:40:13# new log file should be created.
00:40:13omero.logging.logsize=5000000
00:40:1300:40:13## (For documentation only)
00:40:13# If omero.logging.timedlog is false or unset, specifies the
00:40:13# number of old server log files that should be kept. Old log
00:40:13# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:40:13omero.logging.lognum=9
00:40:1300:40:13## (For documentation only)
00:40:13# Specifies the threshold for the Python servers log files. Logging messages
00:40:13# which are less severe than this value will be ignored. For a list of
00:40:13# available values, see https://docs.python.org/3/library/logging.html#levels.
00:40:13omero.logging.level=20
00:40:1300:40:13#############################################
00:40:13## Ice overrides
00:40:13##
00:40:13## Though not used directly by OMERO, a number
00:40:13## of properties prefixed with "Ice.*" will
00:40:13## alter the behavior of the OMERO runtime
00:40:13## by configuring the Ice communicators. For a
00:40:13## full listing see:
00:40:13##
00:40:13## http://doc.zeroc.com/display/Ice/Property+Reference00:40:13## For more information see
00:40:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:40:13#############################################
00:40:1300:40:13# Disable IPv6 by setting to 0. Only needed in
00:40:13# certain situations.
00:40:13Ice.IPv6=1
00:40:1300:40:13# Glacier2Template IceSSL defaults and overrides,
00:40:13# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
00:40:13# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:40:13# update the corresponding IceSSL. property.
00:40:13omero.glacier2.IceSSL=
00:40:1300:40:13# Glacier2Template SSL maximum allowed protocol (mac bug)
00:40:13omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:40:13# Glacier2Template SSL allowed cipher suites
00:40:13omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:40:13# Glacier2Template SSL verification requirements
00:40:13omero.glacier2.IceSSL.VerifyPeer=0
00:40:13# Glacier2Template SSL allowed protocols
00:40:13omero.glacier2.IceSSL.Protocols=tls1
00:40:1300:40:13# Override the default set of OMERO services.
00:40:13# For example, to run OMERO.server with Blitz and Tables only
00:40:13# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:40:13# set this to ``master:Blitz-0,Tables-0``.
00:40:13# Also use this to distribute OMERO services across multiple nodes,
00:40:13# for example:
00:40:13# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:40:13# See
00:40:13# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:40:13omero.server.nodedescriptors=
00:40:1300:40:13#############################################
00:40:13## Darwin (OS X) specific defaults for templated configuration files only.
00:40:13## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:40:13## file.
00:40:13## Do not set these properties in ``omero config``, instead set the original
00:40:13## ``xxx.yyy`` property
00:40:13#############################################
00:40:13_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:40:1300:40:13## (For documentation only)
00:40:13# Name of the Python module to use when starting the Tables service
00:40:13omero.tables.module=runTables
00:40:1300:40:13#############################################
00:40:13## Server product name for release artifacts
00:40:13#############################################
00:40:13product.name=OMERO.server
00:40:1300:40:13#############################################
00:40:13### Properties below this marker are ignored by
00:40:13### omero.install.config_parser.PropertyParser
00:40:13### END
00:40:1300:40:13#############################################
00:40:13## Library versions
00:40:13#############################################
00:40:13##
00:40:13versions.findbugs=1.2.1
00:40:13versions.ice36=3.6.5
00:40:13versions.ice36_lib=36
00:40:13## internal
00:40:13versions.omeroshares36=3.6.3
00:40:13versions.omeromock36=3.6.3
00:40:13versions.icedb36=3.6.3
00:40:13versions.ipython=1.2.1
00:40:1300:40:13versions.janino=2.5.10
00:40:1300:40:13versions.reportng=1.1.1
00:40:1300:40:13versions.testng=7.5
00:40:13versions.velocity=1.4
00:40:1300:40:13versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:40:13versions.omero-scripts-url=${versions.omero-pypi}
00:40:1300:40:13###
00:40:13### Appended Values
00:40:13###
00:40:1300:40:13## Internal dependencies'
00:40:13+ echo '##
00:40:13## omero.properties
00:40:13## ----------------
00:40:13##
00:40:13## DO NOT EDIT!
00:40:13##
00:40:13##
00:40:13## Any of these properties can be altered by using `omero config`. MODIFYING
00:40:13## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
00:40:13## at compile time!
00:40:13##
00:40:13## For an overview of these properties, see
00:40:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html00:40:13##
00:40:13## Properties marked with "DEVELOPMENT" should not be used in production.
00:40:1300:40:13# Comma separated list of Ice transports available to clients. The default
00:40:13# value ("ssl,tcp") instructs Ice to open the ports specified by the
00:40:13# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
00:40:13# will prevent all non-encrypted connections to the OMERO server.
00:40:13#
00:40:13# Additionally, there are two experimental values for using websockets:
00:40:13# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
00:40:13# that are opened are controlled by the omero.ports.ws and omero.ports.wss
00:40:13# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
00:40:13#
00:40:13# Note: When using websockets behind a web server like nginx, additional
00:40:13# configuration may be needed.
00:40:13omero.client.icetransports=ssl,tcp
00:40:1300:40:13# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
00:40:13# server
00:40:13omero.ports.prefix=
00:40:1300:40:13# The Glacier2 SSL port number to use
00:40:13omero.ports.ssl=4064
00:40:1300:40:13# The Glacier2 TCP port number to use (unencrypted)
00:40:13omero.ports.tcp=4063
00:40:1300:40:13# The Glacier2 WSS port number to use
00:40:13omero.ports.wss=4066
00:40:1300:40:13# The Glacier2 WS port number to use (unencrypted)
00:40:13omero.ports.ws=4065
00:40:1300:40:13# The IceGrid registry port number to use
00:40:13omero.ports.registry=4061
00:40:1300:40:13#############################################
00:40:13## JVM configuration
00:40:13##
00:40:13## Note: changes to the omero.jvmcfg properties
00:40:13## will *not* be reflected in OMERO.server
00:40:13## since they are defined in OMERO.py.
00:40:13#############################################
00:40:13## (For documentation only)
00:40:13# Memory strategy which will be used by default.
00:40:13# Options include: percent, manual
00:40:13omero.jvmcfg.strategy=percent
00:40:1300:40:13## (For documentation only)
00:40:13# Explicit value for the `-Xmx` argument, e.g.
00:40:13# "1g"
00:40:13omero.jvmcfg.heap_size=
00:40:1300:40:13## (For documentation only)
00:40:13# Explicit value for the MaxPermSize argument
00:40:13# to the JVM, e.g. "500M". Ignored for Java8+
00:40:13omero.jvmcfg.perm_gen=
00:40:1300:40:13## (For documentation only)
00:40:13# Toggles on or off heap dumps on OOMs. Default is "off".
00:40:13# The special value "tmp" will create the heap dumps in
00:40:13# your temp directory.
00:40:13omero.jvmcfg.heap_dump=
00:40:1300:40:13## (For documentation only)
00:40:13# Used only by the percent strategy. An integer between 0
00:40:13# and 100 which is the percent of active memory that will
00:40:13# be used by the service.
00:40:13omero.jvmcfg.percent=
00:40:1300:40:13## (For documentation only)
00:40:13# Contains other parameters which should be passed to the
00:40:13# JVM. The value of "append" is treated as if it were on
00:40:13# the command line so will be separated on whitespace.
00:40:13# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
00:40:13# results in two new arguments.
00:40:13# Note that when using `config set` from the command line
00:40:13# one may need to give a prior `--` option to prevent a value
00:40:13# starting with `-` from already being parsed as an option,
00:40:13# and values may need quoting to prevent whitespace or other
00:40:13# significant characters from being interpreted prematurely.
00:40:1300:40:13omero.jvmcfg.append=
00:40:1300:40:13## (For documentation only)
00:40:13# Manual override of the total system memory that
00:40:13# OMERO will *think* is present on the local OS (MB).
00:40:13# If unset, an attempt will be made to detect the actual
00:40:13# amount: first by using the Python library `psutil` and
00:40:13# if that is not installed, by running a Java tool. If
00:40:13# neither works, 4.0GB is assumed.
00:40:13omero.jvmcfg.system_memory=
00:40:1300:40:13## (For documentation only)
00:40:13# Suggestion for strategies as to the minimum memory
00:40:13# that they will use for calculating JVM settings (MB).
00:40:13omero.jvmcfg.min_system_memory=3414
00:40:1300:40:13## (For documentation only)
00:40:13# Suggestion for strategies as to the maximum memory
00:40:13# that they will use for calculating JVM settings (MB).
00:40:13omero.jvmcfg.max_system_memory=48000
00:40:1300:40:1300:40:13#############################################
00:40:13## Logging properties
00:40:13##
00:40:13## Note: changes to the default omero.logging values in
00:40:13## this file will *not* be reflected in OMERO.server
00:40:13## since they are defined in OMERO.py
00:40:13#############################################
00:40:1300:40:13## (For documentation only)
00:40:13# Relative server directory where the log files should be stored.
00:40:13omero.logging.directory=var/log/
00:40:1300:40:13## (For documentation only)
00:40:13# Whether the server log files should be rotated at a certain time
00:40:13# interval. If true, log files will be rolled over at midnight.
00:40:13# Otherwise, log files will be rolled over at a predetermined size,
00:40:13# see omero.logging.logsize for more information.
00:40:13omero.logging.timedlog=false
00:40:1300:40:13## (For documentation only)
00:40:13# If omero.logging.timedlog is false or unset, specifies the
00:40:13# maximum size of the server log files in bytes above which a
00:40:13# new log file should be created.
00:40:13omero.logging.logsize=5000000
00:40:1300:40:13## (For documentation only)
00:40:13# If omero.logging.timedlog is false or unset, specifies the
00:40:13# number of old server log files that should be kept. Old log
00:40:13# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
00:40:13omero.logging.lognum=9
00:40:1300:40:13## (For documentation only)
00:40:13# Specifies the threshold for the Python servers log files. Logging messages
00:40:13# which are less severe than this value will be ignored. For a list of
00:40:13# available values, see https://docs.python.org/3/library/logging.html#levels.
00:40:13omero.logging.level=20
00:40:1300:40:13#############################################
00:40:13## Ice overrides
00:40:13##
00:40:13## Though not used directly by OMERO, a number
00:40:13## of properties prefixed with "Ice.*" will
00:40:13## alter the behavior of the OMERO runtime
00:40:13## by configuring the Ice communicators. For a
00:40:13## full listing see:
00:40:13##
00:40:13## http://doc.zeroc.com/display/Ice/Property+Reference00:40:13## For more information see
00:40:13## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start00:40:13#############################################
00:40:1300:40:13# Disable IPv6 by setting to 0. Only needed in
00:40:13# certain situations.
00:40:13Ice.IPv6=1
00:40:1300:40:13# Glacier2Template IceSSL defaults and overrides,
00:40:13# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
00:40:13# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
00:40:13# update the corresponding IceSSL. property.
00:40:13omero.glacier2.IceSSL=
00:40:1300:40:13# Glacier2Template SSL maximum allowed protocol (mac bug)
00:40:13omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
00:40:13# Glacier2Template SSL allowed cipher suites
00:40:13omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
00:40:13# Glacier2Template SSL verification requirements
00:40:13omero.glacier2.IceSSL.VerifyPeer=0
00:40:13# Glacier2Template SSL allowed protocols
00:40:13omero.glacier2.IceSSL.Protocols=tls1
00:40:1300:40:13# Override the default set of OMERO services.
00:40:13# For example, to run OMERO.server with Blitz and Tables only
00:40:13# (i.e. disable Processor, DropBox, Indexer, PixelData)
00:40:13# set this to ``master:Blitz-0,Tables-0``.
00:40:13# Also use this to distribute OMERO services across multiple nodes,
00:40:13# for example:
00:40:13# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
00:40:13# See
00:40:13# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples00:40:13omero.server.nodedescriptors=
00:40:1300:40:13#############################################
00:40:13## Darwin (OS X) specific defaults for templated configuration files only.
00:40:13## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
00:40:13## file.
00:40:13## Do not set these properties in ``omero config``, instead set the original
00:40:13## ``xxx.yyy`` property
00:40:13#############################################
00:40:13_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
00:40:1300:40:13## (For documentation only)
00:40:13# Name of the Python module to use when starting the Tables service
00:40:13omero.tables.module=runTables
00:40:1300:40:13#############################################
00:40:13## Server product name for release artifacts
00:40:13#############################################
00:40:13product.name=OMERO.server
00:40:1300:40:13#############################################
00:40:13### Properties below this marker are ignored by
00:40:13### omero.install.config_parser.PropertyParser
00:40:13### END
00:40:1300:40:13#############################################
00:40:13## Library versions
00:40:13#############################################
00:40:13##
00:40:13versions.findbugs=1.2.1
00:40:13versions.ice36=3.6.5
00:40:13versions.ice36_lib=36
00:40:13## internal
00:40:13versions.omeroshares36=3.6.3
00:40:13versions.omeromock36=3.6.3
00:40:13versions.icedb36=3.6.3
00:40:13versions.ipython=1.2.1
00:40:1300:40:13versions.janino=2.5.10
00:40:1300:40:13versions.reportng=1.1.1
00:40:1300:40:13versions.testng=7.5
00:40:13versions.velocity=1.4
00:40:1300:40:13versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE00:40:13versions.omero-scripts-url=${versions.omero-pypi}
00:40:1300:40:13###
00:40:13### Appended Values
00:40:13###
00:40:1300:40:13## Internal dependencies'
00:40:13+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/00:40:13+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive00:40:13+ echo versions.scripts-prefix=
00:40:13+ echo versions.scripts=merge_ci
00:40:13+ cat /home/omero/workspace/OMERO-push/version.properties
00:40:13+ git commit -a -m 'Add version.properties to etc/omero.properties'
00:40:13[detached HEAD 9ed1598646] Add version.properties to etc/omero.properties
00:40:13 1 file changed, 47 insertions(+), 7 deletions(-)
00:40:13+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
00:40:15To github.com:snoopycrimecop/openmicroscopy.git
00:40:15 + c2479c27a8...9ed1598646 HEAD -> merge_ci (forced update)
00:40:15Finished: SUCCESS
![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
