07:58:49Started by upstream project "Trigger" build number 24107:58:49originally caused by:
07:58:49 Started by user devspace07:58:49Running as SYSTEM
07:58:49Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
07:58:49The recommended git tool is: NONE
07:58:49No credentials specified
07:58:49 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
07:58:49Fetching changes from the remote Git repository
07:58:49 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
07:58:49Fetching upstream changes from https://github.com/ome/openmicroscopy.git07:58:49 > git --version # timeout=10
07:58:49 > git --version # 'git version 2.43.5'
07:58:49 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:58:51 > git rev-parse origin/develop^{commit} # timeout=10
07:58:51Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
07:58:51 > git config core.sparsecheckout # timeout=10
07:58:51 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
07:58:53Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
07:58:53 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
07:58:53Cleaning workspace
07:58:53 > git rev-parse --verify HEAD # timeout=10
07:58:53Resetting working tree
07:58:53 > git reset --hard # timeout=10
07:58:53 > git clean -fdx # timeout=10
07:58:53Copied 1 artifact from "OMERO-python-superbuild-build" build number 19507:58:53[OMERO-push] $ /bin/bash -xe /tmp/jenkins9245324171568504521.sh
07:58:53+ python3 -mvenv venv
07:58:55+ source /home/omero/workspace/OMERO-push/venv/bin/activate
07:58:55++ deactivate nondestructive
07:58:55++ '[' -n '' ']'
07:58:55++ '[' -n '' ']'
07:58:55++ '[' -n /bin/bash -o -n '' ']'
07:58:55++ hash -r
07:58:55++ '[' -n '' ']'
07:58:55++ unset VIRTUAL_ENV
07:58:55++ '[' '!' nondestructive = nondestructive ']'
07:58:55++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
07:58:55++ export VIRTUAL_ENV
07:58:55++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:58:55++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:58:55++ export PATH
07:58:55++ '[' -n '' ']'
07:58:55++ '[' -z '' ']'
07:58:55++ _OLD_VIRTUAL_PS1=
07:58:55++ PS1='(venv) '
07:58:55++ export PS1
07:58:55++ '[' -n /bin/bash -o -n '' ']'
07:58:55++ hash -r
07:58:55+ pip install -U pip
07:58:57Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
07:58:58+ pip install -U scc
07:58:58Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
07:58:58Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
07:58:58Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
07:58:58Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
07:58:58Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
07:58:58Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
07:58:58Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
07:58:58Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
07:58:58Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
07:58:58Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
07:58:58Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
07:58:58Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
07:58:58Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
07:58:58Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
07:58:58Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
07:58:58Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
07:58:58Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
07:58:58Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
07:58:58Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
07:58:58Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
07:58:58Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
07:58:58Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
07:58:58+ test -e src
07:58:58+ cd src
07:58:58++ git config github.user
07:58:58+ user=snoopycrimecop
07:58:58+ scc merge develop --no-ask --reset --shallow -S success-only
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Merging Pull Request(s) based on develop
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
07:59:032024-10-08 07:59:03,661 [ scc.merge] INFO Excluding Pull Request(s) without successful status
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO Repository: ome/openmicroscopy
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO Excluded PRs:
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO Already up to date.
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO Merged PRs:
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6309 jburel 'add try block'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
07:59:332024-10-08 07:59:33,592 [ scc.merge] INFO
07:59:33+ cp etc/omero.properties etc/omero.properties.bak
07:59:33+ rm etc/omero.properties
07:59:33+ touch etc/omero.properties
07:59:33++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
07:59:33+ ne=249
07:59:33++ sed -n 1,249p etc/omero.properties.bak
07:59:33+ line='##
07:59:33## omero.properties
07:59:33## ----------------
07:59:33##
07:59:33## DO NOT EDIT!
07:59:33##
07:59:33##
07:59:33## Any of these properties can be altered by using `omero config`. MODIFYING
07:59:33## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:59:33## at compile time!
07:59:33##
07:59:33## For an overview of these properties, see
07:59:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:59:33##
07:59:33## Properties marked with "DEVELOPMENT" should not be used in production.
07:59:3307:59:33# Comma separated list of Ice transports available to clients. The default
07:59:33# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:59:33# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:59:33# will prevent all non-encrypted connections to the OMERO server.
07:59:33#
07:59:33# Additionally, there are two experimental values for using websockets:
07:59:33# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:59:33# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:59:33# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:59:33#
07:59:33# Note: When using websockets behind a web server like nginx, additional
07:59:33# configuration may be needed.
07:59:33omero.client.icetransports=ssl,tcp
07:59:3307:59:33# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:59:33# server
07:59:33omero.ports.prefix=
07:59:3307:59:33# The Glacier2 SSL port number to use
07:59:33omero.ports.ssl=4064
07:59:3307:59:33# The Glacier2 TCP port number to use (unencrypted)
07:59:33omero.ports.tcp=4063
07:59:3307:59:33# The Glacier2 WSS port number to use
07:59:33omero.ports.wss=4066
07:59:3307:59:33# The Glacier2 WS port number to use (unencrypted)
07:59:33omero.ports.ws=4065
07:59:3307:59:33# The IceGrid registry port number to use
07:59:33omero.ports.registry=4061
07:59:3307:59:33#############################################
07:59:33## JVM configuration
07:59:33##
07:59:33## Note: changes to the omero.jvmcfg properties
07:59:33## will *not* be reflected in OMERO.server
07:59:33## since they are defined in OMERO.py.
07:59:33#############################################
07:59:33## (For documentation only)
07:59:33# Memory strategy which will be used by default.
07:59:33# Options include: percent, manual
07:59:33omero.jvmcfg.strategy=percent
07:59:3307:59:33## (For documentation only)
07:59:33# Explicit value for the `-Xmx` argument, e.g.
07:59:33# "1g"
07:59:33omero.jvmcfg.heap_size=
07:59:3307:59:33## (For documentation only)
07:59:33# Explicit value for the MaxPermSize argument
07:59:33# to the JVM, e.g. "500M". Ignored for Java8+
07:59:33omero.jvmcfg.perm_gen=
07:59:3307:59:33## (For documentation only)
07:59:33# Toggles on or off heap dumps on OOMs. Default is "off".
07:59:33# The special value "tmp" will create the heap dumps in
07:59:33# your temp directory.
07:59:33omero.jvmcfg.heap_dump=
07:59:3307:59:33## (For documentation only)
07:59:33# Used only by the percent strategy. An integer between 0
07:59:33# and 100 which is the percent of active memory that will
07:59:33# be used by the service.
07:59:33omero.jvmcfg.percent=
07:59:3307:59:33## (For documentation only)
07:59:33# Contains other parameters which should be passed to the
07:59:33# JVM. The value of "append" is treated as if it were on
07:59:33# the command line so will be separated on whitespace.
07:59:33# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:59:33# results in two new arguments.
07:59:33# Note that when using `config set` from the command line
07:59:33# one may need to give a prior `--` option to prevent a value
07:59:33# starting with `-` from already being parsed as an option,
07:59:33# and values may need quoting to prevent whitespace or other
07:59:33# significant characters from being interpreted prematurely.
07:59:3307:59:33omero.jvmcfg.append=
07:59:3307:59:33## (For documentation only)
07:59:33# Manual override of the total system memory that
07:59:33# OMERO will *think* is present on the local OS (MB).
07:59:33# If unset, an attempt will be made to detect the actual
07:59:33# amount: first by using the Python library `psutil` and
07:59:33# if that is not installed, by running a Java tool. If
07:59:33# neither works, 4.0GB is assumed.
07:59:33omero.jvmcfg.system_memory=
07:59:3307:59:33## (For documentation only)
07:59:33# Suggestion for strategies as to the minimum memory
07:59:33# that they will use for calculating JVM settings (MB).
07:59:33omero.jvmcfg.min_system_memory=3414
07:59:3307:59:33## (For documentation only)
07:59:33# Suggestion for strategies as to the maximum memory
07:59:33# that they will use for calculating JVM settings (MB).
07:59:33omero.jvmcfg.max_system_memory=48000
07:59:3307:59:3307:59:33#############################################
07:59:33## Logging properties
07:59:33##
07:59:33## Note: changes to the default omero.logging values in
07:59:33## this file will *not* be reflected in OMERO.server
07:59:33## since they are defined in OMERO.py
07:59:33#############################################
07:59:3307:59:33## (For documentation only)
07:59:33# Relative server directory where the log files should be stored.
07:59:33omero.logging.directory=var/log/
07:59:3307:59:33## (For documentation only)
07:59:33# Whether the server log files should be rotated at a certain time
07:59:33# interval. If true, log files will be rolled over at midnight.
07:59:33# Otherwise, log files will be rolled over at a predetermined size,
07:59:33# see omero.logging.logsize for more information.
07:59:33omero.logging.timedlog=false
07:59:3307:59:33## (For documentation only)
07:59:33# If omero.logging.timedlog is false or unset, specifies the
07:59:33# maximum size of the server log files in bytes above which a
07:59:33# new log file should be created.
07:59:33omero.logging.logsize=5000000
07:59:3307:59:33## (For documentation only)
07:59:33# If omero.logging.timedlog is false or unset, specifies the
07:59:33# number of old server log files that should be kept. Old log
07:59:33# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:59:33omero.logging.lognum=9
07:59:3307:59:33## (For documentation only)
07:59:33# Specifies the threshold for the Python servers log files. Logging messages
07:59:33# which are less severe than this value will be ignored. For a list of
07:59:33# available values, see https://docs.python.org/3/library/logging.html#levels.
07:59:33omero.logging.level=20
07:59:3307:59:33#############################################
07:59:33## Ice overrides
07:59:33##
07:59:33## Though not used directly by OMERO, a number
07:59:33## of properties prefixed with "Ice.*" will
07:59:33## alter the behavior of the OMERO runtime
07:59:33## by configuring the Ice communicators. For a
07:59:33## full listing see:
07:59:33##
07:59:33## http://doc.zeroc.com/display/Ice/Property+Reference07:59:33## For more information see
07:59:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:59:33#############################################
07:59:3307:59:33# Disable IPv6 by setting to 0. Only needed in
07:59:33# certain situations.
07:59:33Ice.IPv6=1
07:59:3307:59:33# Glacier2Template IceSSL defaults and overrides,
07:59:33# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:59:33# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:59:33# update the corresponding IceSSL. property.
07:59:33omero.glacier2.IceSSL=
07:59:3307:59:33# Glacier2Template SSL maximum allowed protocol (mac bug)
07:59:33omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:59:33# Glacier2Template SSL allowed cipher suites
07:59:33omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:59:33# Glacier2Template SSL verification requirements
07:59:33omero.glacier2.IceSSL.VerifyPeer=0
07:59:33# Glacier2Template SSL allowed protocols
07:59:33omero.glacier2.IceSSL.Protocols=tls1
07:59:3307:59:33# Override the default set of OMERO services.
07:59:33# For example, to run OMERO.server with Blitz and Tables only
07:59:33# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:59:33# set this to ``master:Blitz-0,Tables-0``.
07:59:33# Also use this to distribute OMERO services across multiple nodes,
07:59:33# for example:
07:59:33# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:59:33# See
07:59:33# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:59:33omero.server.nodedescriptors=
07:59:3307:59:33#############################################
07:59:33## Darwin (OS X) specific defaults for templated configuration files only.
07:59:33## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:59:33## file.
07:59:33## Do not set these properties in ``omero config``, instead set the original
07:59:33## ``xxx.yyy`` property
07:59:33#############################################
07:59:33_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:59:3307:59:33## (For documentation only)
07:59:33# Name of the Python module to use when starting the Tables service
07:59:33omero.tables.module=runTables
07:59:3307:59:33#############################################
07:59:33## Server product name for release artifacts
07:59:33#############################################
07:59:33product.name=OMERO.server
07:59:3307:59:33#############################################
07:59:33### Properties below this marker are ignored by
07:59:33### omero.install.config_parser.PropertyParser
07:59:33### END
07:59:3307:59:33#############################################
07:59:33## Library versions
07:59:33#############################################
07:59:33##
07:59:33versions.findbugs=1.2.1
07:59:33versions.ice36=3.6.5
07:59:33versions.ice36_lib=36
07:59:33## internal
07:59:33versions.omeroshares36=3.6.3
07:59:33versions.omeromock36=3.6.3
07:59:33versions.icedb36=3.6.3
07:59:33versions.ipython=1.2.1
07:59:3307:59:33versions.janino=2.5.10
07:59:3307:59:33versions.reportng=1.1.1
07:59:3307:59:33versions.testng=7.5
07:59:33versions.velocity=1.4
07:59:3307:59:33versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:59:33versions.omero-scripts-url=${versions.omero-pypi}
07:59:3307:59:33###
07:59:33### Appended Values
07:59:33###
07:59:3307:59:33## Internal dependencies'
07:59:33+ echo '##
07:59:33## omero.properties
07:59:33## ----------------
07:59:33##
07:59:33## DO NOT EDIT!
07:59:33##
07:59:33##
07:59:33## Any of these properties can be altered by using `omero config`. MODIFYING
07:59:33## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:59:33## at compile time!
07:59:33##
07:59:33## For an overview of these properties, see
07:59:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:59:33##
07:59:33## Properties marked with "DEVELOPMENT" should not be used in production.
07:59:3307:59:33# Comma separated list of Ice transports available to clients. The default
07:59:33# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:59:33# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:59:33# will prevent all non-encrypted connections to the OMERO server.
07:59:33#
07:59:33# Additionally, there are two experimental values for using websockets:
07:59:33# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:59:33# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:59:33# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:59:33#
07:59:33# Note: When using websockets behind a web server like nginx, additional
07:59:33# configuration may be needed.
07:59:33omero.client.icetransports=ssl,tcp
07:59:3307:59:33# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:59:33# server
07:59:33omero.ports.prefix=
07:59:3307:59:33# The Glacier2 SSL port number to use
07:59:33omero.ports.ssl=4064
07:59:3307:59:33# The Glacier2 TCP port number to use (unencrypted)
07:59:33omero.ports.tcp=4063
07:59:3307:59:33# The Glacier2 WSS port number to use
07:59:33omero.ports.wss=4066
07:59:3307:59:33# The Glacier2 WS port number to use (unencrypted)
07:59:33omero.ports.ws=4065
07:59:3307:59:33# The IceGrid registry port number to use
07:59:33omero.ports.registry=4061
07:59:3307:59:33#############################################
07:59:33## JVM configuration
07:59:33##
07:59:33## Note: changes to the omero.jvmcfg properties
07:59:33## will *not* be reflected in OMERO.server
07:59:33## since they are defined in OMERO.py.
07:59:33#############################################
07:59:33## (For documentation only)
07:59:33# Memory strategy which will be used by default.
07:59:33# Options include: percent, manual
07:59:33omero.jvmcfg.strategy=percent
07:59:3307:59:33## (For documentation only)
07:59:33# Explicit value for the `-Xmx` argument, e.g.
07:59:33# "1g"
07:59:33omero.jvmcfg.heap_size=
07:59:3307:59:33## (For documentation only)
07:59:33# Explicit value for the MaxPermSize argument
07:59:33# to the JVM, e.g. "500M". Ignored for Java8+
07:59:33omero.jvmcfg.perm_gen=
07:59:3307:59:33## (For documentation only)
07:59:33# Toggles on or off heap dumps on OOMs. Default is "off".
07:59:33# The special value "tmp" will create the heap dumps in
07:59:33# your temp directory.
07:59:33omero.jvmcfg.heap_dump=
07:59:3307:59:33## (For documentation only)
07:59:33# Used only by the percent strategy. An integer between 0
07:59:33# and 100 which is the percent of active memory that will
07:59:33# be used by the service.
07:59:33omero.jvmcfg.percent=
07:59:3307:59:33## (For documentation only)
07:59:33# Contains other parameters which should be passed to the
07:59:33# JVM. The value of "append" is treated as if it were on
07:59:33# the command line so will be separated on whitespace.
07:59:33# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:59:33# results in two new arguments.
07:59:33# Note that when using `config set` from the command line
07:59:33# one may need to give a prior `--` option to prevent a value
07:59:33# starting with `-` from already being parsed as an option,
07:59:33# and values may need quoting to prevent whitespace or other
07:59:33# significant characters from being interpreted prematurely.
07:59:3307:59:33omero.jvmcfg.append=
07:59:3307:59:33## (For documentation only)
07:59:33# Manual override of the total system memory that
07:59:33# OMERO will *think* is present on the local OS (MB).
07:59:33# If unset, an attempt will be made to detect the actual
07:59:33# amount: first by using the Python library `psutil` and
07:59:33# if that is not installed, by running a Java tool. If
07:59:33# neither works, 4.0GB is assumed.
07:59:33omero.jvmcfg.system_memory=
07:59:3307:59:33## (For documentation only)
07:59:33# Suggestion for strategies as to the minimum memory
07:59:33# that they will use for calculating JVM settings (MB).
07:59:33omero.jvmcfg.min_system_memory=3414
07:59:3307:59:33## (For documentation only)
07:59:33# Suggestion for strategies as to the maximum memory
07:59:33# that they will use for calculating JVM settings (MB).
07:59:33omero.jvmcfg.max_system_memory=48000
07:59:3307:59:3307:59:33#############################################
07:59:33## Logging properties
07:59:33##
07:59:33## Note: changes to the default omero.logging values in
07:59:33## this file will *not* be reflected in OMERO.server
07:59:33## since they are defined in OMERO.py
07:59:33#############################################
07:59:3307:59:33## (For documentation only)
07:59:33# Relative server directory where the log files should be stored.
07:59:33omero.logging.directory=var/log/
07:59:3307:59:33## (For documentation only)
07:59:33# Whether the server log files should be rotated at a certain time
07:59:33# interval. If true, log files will be rolled over at midnight.
07:59:33# Otherwise, log files will be rolled over at a predetermined size,
07:59:33# see omero.logging.logsize for more information.
07:59:33omero.logging.timedlog=false
07:59:3307:59:33## (For documentation only)
07:59:33# If omero.logging.timedlog is false or unset, specifies the
07:59:33# maximum size of the server log files in bytes above which a
07:59:33# new log file should be created.
07:59:33omero.logging.logsize=5000000
07:59:3307:59:33## (For documentation only)
07:59:33# If omero.logging.timedlog is false or unset, specifies the
07:59:33# number of old server log files that should be kept. Old log
07:59:33# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:59:33omero.logging.lognum=9
07:59:3307:59:33## (For documentation only)
07:59:33# Specifies the threshold for the Python servers log files. Logging messages
07:59:33# which are less severe than this value will be ignored. For a list of
07:59:33# available values, see https://docs.python.org/3/library/logging.html#levels.
07:59:33omero.logging.level=20
07:59:3307:59:33#############################################
07:59:33## Ice overrides
07:59:33##
07:59:33## Though not used directly by OMERO, a number
07:59:33## of properties prefixed with "Ice.*" will
07:59:33## alter the behavior of the OMERO runtime
07:59:33## by configuring the Ice communicators. For a
07:59:33## full listing see:
07:59:33##
07:59:33## http://doc.zeroc.com/display/Ice/Property+Reference07:59:33## For more information see
07:59:33## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:59:33#############################################
07:59:3307:59:33# Disable IPv6 by setting to 0. Only needed in
07:59:33# certain situations.
07:59:33Ice.IPv6=1
07:59:3307:59:33# Glacier2Template IceSSL defaults and overrides,
07:59:33# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:59:33# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:59:33# update the corresponding IceSSL. property.
07:59:33omero.glacier2.IceSSL=
07:59:3307:59:33# Glacier2Template SSL maximum allowed protocol (mac bug)
07:59:33omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:59:33# Glacier2Template SSL allowed cipher suites
07:59:33omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:59:33# Glacier2Template SSL verification requirements
07:59:33omero.glacier2.IceSSL.VerifyPeer=0
07:59:33# Glacier2Template SSL allowed protocols
07:59:33omero.glacier2.IceSSL.Protocols=tls1
07:59:3307:59:33# Override the default set of OMERO services.
07:59:33# For example, to run OMERO.server with Blitz and Tables only
07:59:33# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:59:33# set this to ``master:Blitz-0,Tables-0``.
07:59:33# Also use this to distribute OMERO services across multiple nodes,
07:59:33# for example:
07:59:33# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:59:33# See
07:59:33# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:59:33omero.server.nodedescriptors=
07:59:3307:59:33#############################################
07:59:33## Darwin (OS X) specific defaults for templated configuration files only.
07:59:33## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:59:33## file.
07:59:33## Do not set these properties in ``omero config``, instead set the original
07:59:33## ``xxx.yyy`` property
07:59:33#############################################
07:59:33_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:59:3307:59:33## (For documentation only)
07:59:33# Name of the Python module to use when starting the Tables service
07:59:33omero.tables.module=runTables
07:59:3307:59:33#############################################
07:59:33## Server product name for release artifacts
07:59:33#############################################
07:59:33product.name=OMERO.server
07:59:3307:59:33#############################################
07:59:33### Properties below this marker are ignored by
07:59:33### omero.install.config_parser.PropertyParser
07:59:33### END
07:59:3307:59:33#############################################
07:59:33## Library versions
07:59:33#############################################
07:59:33##
07:59:33versions.findbugs=1.2.1
07:59:33versions.ice36=3.6.5
07:59:33versions.ice36_lib=36
07:59:33## internal
07:59:33versions.omeroshares36=3.6.3
07:59:33versions.omeromock36=3.6.3
07:59:33versions.icedb36=3.6.3
07:59:33versions.ipython=1.2.1
07:59:3307:59:33versions.janino=2.5.10
07:59:3307:59:33versions.reportng=1.1.1
07:59:3307:59:33versions.testng=7.5
07:59:33versions.velocity=1.4
07:59:3307:59:33versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:59:33versions.omero-scripts-url=${versions.omero-pypi}
07:59:3307:59:33###
07:59:33### Appended Values
07:59:33###
07:59:3307:59:33## Internal dependencies'
07:59:33+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/07:59:33+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive07:59:33+ echo versions.scripts-prefix=
07:59:33+ echo versions.scripts=merge_ci
07:59:33+ cat /home/omero/workspace/OMERO-push/version.properties
07:59:33+ git commit -a -m 'Add version.properties to etc/omero.properties'
07:59:33[detached HEAD 77dcd6034a] Add version.properties to etc/omero.properties
07:59:33 1 file changed, 47 insertions(+), 7 deletions(-)
07:59:33+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
07:59:35To github.com:snoopycrimecop/openmicroscopy.git
07:59:35 + 28b8569e14...77dcd6034a HEAD -> merge_ci (forced update)
07:59:35Finished: SUCCESS
![[Jenkins]](/jenkins/static/4f42acd4/images/svgs/logo.svg){kind=logo}
