07:07:17Started by upstream project "Trigger" build number 5107:07:17originally caused by:
07:07:17 Started by user devspace07:07:17 Restarted from build #50, stage OMERO Distribution
07:07:17Running as SYSTEM
07:07:17Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
07:07:17The recommended git tool is: NONE
07:07:17No credentials specified
07:07:17 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
07:07:17Fetching changes from the remote Git repository
07:07:17 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
07:07:17Fetching upstream changes from https://github.com/ome/openmicroscopy.git07:07:17 > git --version # timeout=10
07:07:17 > git --version # 'git version 2.47.3'
07:07:17 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:07:18 > git rev-parse origin/develop^{commit} # timeout=10
07:07:18Checking out Revision 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 (origin/develop)
07:07:18 > git config core.sparsecheckout # timeout=10
07:07:18 > git checkout -f 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=30
07:07:18Commit message: "Merge pull request #6441 from sbesson/tmpdir_var_tmp"
07:07:18 > git rev-list --no-walk 0763546fbc345dbc1bbcf1995bd9d631f5ba1567 # timeout=10
07:07:18Cleaning workspace
07:07:18 > git rev-parse --verify HEAD # timeout=10
07:07:18Resetting working tree
07:07:18 > git reset --hard # timeout=10
07:07:18 > git clean -fdx # timeout=10
07:07:18Copied 1 artifact from "OMERO-python-superbuild-build" build number 2707:07:18[OMERO-push] $ /bin/bash -xe /tmp/jenkins10261349154411198449.sh
07:07:18+ python3.11 -mvenv venv
07:07:19+ source /home/omero/workspace/OMERO-push/venv/bin/activate
07:07:19++ deactivate nondestructive
07:07:19++ '[' -n '' ']'
07:07:19++ '[' -n '' ']'
07:07:19++ hash -r
07:07:19++ '[' -n '' ']'
07:07:19++ unset VIRTUAL_ENV
07:07:19++ unset VIRTUAL_ENV_PROMPT
07:07:19++ '[' '!' nondestructive = nondestructive ']'
07:07:19++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
07:07:19++ export VIRTUAL_ENV
07:07:19++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:07:19++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:07:19++ export PATH
07:07:19++ '[' -n '' ']'
07:07:19++ '[' -z '' ']'
07:07:19++ _OLD_VIRTUAL_PS1=
07:07:19++ PS1='(venv) '
07:07:19++ export PS1
07:07:19++ VIRTUAL_ENV_PROMPT='(venv) '
07:07:19++ export VIRTUAL_ENV_PROMPT
07:07:19++ hash -r
07:07:19+ pip install -U pip
07:07:20Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.3)
07:07:20+ pip install -U scc
07:07:20Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
07:07:20Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.8.1)
07:07:20Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
07:07:20Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
07:07:20Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.17)
07:07:20Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
07:07:20Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
07:07:20Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
07:07:20Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
07:07:20Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.1)
07:07:20Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.5)
07:07:20Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
07:07:20Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.15.0)
07:07:20Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (46.0.3)
07:07:20Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.0.0)
07:07:20Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.23)
07:07:20Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.4)
07:07:20Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.11)
07:07:20Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.11.12)
07:07:20Requirement already satisfied: ruamel.yaml.clib>=0.2.15 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.15)
07:07:21+ test -e src
07:07:21+ cd src
07:07:21++ git config github.user
07:07:21+ user=snoopycrimecop
07:07:21+ scc merge develop --no-ask --reset --shallow -S success-only
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Merging Pull Request(s) based on develop
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
07:07:242026-01-23 07:07:24,690 [ scc.merge] INFO Excluding Pull Request(s) without successful status
07:07:402026-01-23 07:07:40,397 [ scc.git] INFO - PR 6444 sbesson 'Remove omero-common-test dependency'
07:07:40Conflicting PR. Removed from build [OMERO-push#28](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/28/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/28/consoleText) for more details.
07:07:40Possible conflicts:
07:07:40 - PR #6442 snoopycrimecop 'update dependencies'
07:07:40 - etc/omero.properties
07:07:4007:07:40--conflicts
07:07:4007:07:402026-01-23 07:07:40,452 [ scc.merge] INFO Repository: ome/openmicroscopy
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO Excluded PRs:
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' (label: exclude)
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO Already up to date.
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO Merged PRs:
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6442 snoopycrimecop 'update dependencies'
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6443 sbesson 'OMERO.web imgData: add integration test for multi-resolution image'
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO Conflicting PRs (not included):
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO - PR 6444 sbesson 'Remove omero-common-test dependency'
07:07:402026-01-23 07:07:40,453 [ scc.merge] INFO
07:07:40+ cp etc/omero.properties etc/omero.properties.bak
07:07:40+ rm etc/omero.properties
07:07:40+ touch etc/omero.properties
07:07:40++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
07:07:40+ ne=249
07:07:40++ sed -n 1,249p etc/omero.properties.bak
07:07:40+ line='##
07:07:40## omero.properties
07:07:40## ----------------
07:07:40##
07:07:40## DO NOT EDIT!
07:07:40##
07:07:40##
07:07:40## Any of these properties can be altered by using `omero config`. MODIFYING
07:07:40## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:07:40## at compile time!
07:07:40##
07:07:40## For an overview of these properties, see
07:07:40## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:07:40##
07:07:40## Properties marked with "DEVELOPMENT" should not be used in production.
07:07:4007:07:40# Comma separated list of Ice transports available to clients. The default
07:07:40# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:07:40# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:07:40# will prevent all non-encrypted connections to the OMERO server.
07:07:40#
07:07:40# Additionally, there are two experimental values for using websockets:
07:07:40# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:07:40# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:07:40# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:07:40#
07:07:40# Note: When using websockets behind a web server like nginx, additional
07:07:40# configuration may be needed.
07:07:40omero.client.icetransports=ssl,tcp
07:07:4007:07:40# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:07:40# server
07:07:40omero.ports.prefix=
07:07:4007:07:40# The Glacier2 SSL port number to use
07:07:40omero.ports.ssl=4064
07:07:4007:07:40# The Glacier2 TCP port number to use (unencrypted)
07:07:40omero.ports.tcp=4063
07:07:4007:07:40# The Glacier2 WSS port number to use
07:07:40omero.ports.wss=4066
07:07:4007:07:40# The Glacier2 WS port number to use (unencrypted)
07:07:40omero.ports.ws=4065
07:07:4007:07:40# The IceGrid registry port number to use
07:07:40omero.ports.registry=4061
07:07:4007:07:40#############################################
07:07:40## JVM configuration
07:07:40##
07:07:40## Note: changes to the omero.jvmcfg properties
07:07:40## will *not* be reflected in OMERO.server
07:07:40## since they are defined in OMERO.py.
07:07:40#############################################
07:07:40## (For documentation only)
07:07:40# Memory strategy which will be used by default.
07:07:40# Options include: percent, manual
07:07:40omero.jvmcfg.strategy=percent
07:07:4007:07:40## (For documentation only)
07:07:40# Explicit value for the `-Xmx` argument, e.g.
07:07:40# "1g"
07:07:40omero.jvmcfg.heap_size=
07:07:4007:07:40## (For documentation only)
07:07:40# Explicit value for the MaxPermSize argument
07:07:40# to the JVM, e.g. "500M". Ignored for Java8+
07:07:40omero.jvmcfg.perm_gen=
07:07:4007:07:40## (For documentation only)
07:07:40# Toggles on or off heap dumps on OOMs. Default is "off".
07:07:40# The special value "tmp" will create the heap dumps in
07:07:40# your temp directory.
07:07:40omero.jvmcfg.heap_dump=
07:07:4007:07:40## (For documentation only)
07:07:40# Used only by the percent strategy. An integer between 0
07:07:40# and 100 which is the percent of active memory that will
07:07:40# be used by the service.
07:07:40omero.jvmcfg.percent=
07:07:4007:07:40## (For documentation only)
07:07:40# Contains other parameters which should be passed to the
07:07:40# JVM. The value of "append" is treated as if it were on
07:07:40# the command line so will be separated on whitespace.
07:07:40# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:07:40# results in two new arguments.
07:07:40# Note that when using `config set` from the command line
07:07:40# one may need to give a prior `--` option to prevent a value
07:07:40# starting with `-` from already being parsed as an option,
07:07:40# and values may need quoting to prevent whitespace or other
07:07:40# significant characters from being interpreted prematurely.
07:07:4007:07:40omero.jvmcfg.append=
07:07:4007:07:40## (For documentation only)
07:07:40# Manual override of the total system memory that
07:07:40# OMERO will *think* is present on the local OS (MB).
07:07:40# If unset, an attempt will be made to detect the actual
07:07:40# amount: first by using the Python library `psutil` and
07:07:40# if that is not installed, by running a Java tool. If
07:07:40# neither works, 4.0GB is assumed.
07:07:40omero.jvmcfg.system_memory=
07:07:4007:07:40## (For documentation only)
07:07:40# Suggestion for strategies as to the minimum memory
07:07:40# that they will use for calculating JVM settings (MB).
07:07:40omero.jvmcfg.min_system_memory=3414
07:07:4007:07:40## (For documentation only)
07:07:40# Suggestion for strategies as to the maximum memory
07:07:40# that they will use for calculating JVM settings (MB).
07:07:40omero.jvmcfg.max_system_memory=48000
07:07:4007:07:4007:07:40#############################################
07:07:40## Logging properties
07:07:40##
07:07:40## Note: changes to the default omero.logging values in
07:07:40## this file will *not* be reflected in OMERO.server
07:07:40## since they are defined in OMERO.py
07:07:40#############################################
07:07:4007:07:40## (For documentation only)
07:07:40# Relative server directory where the log files should be stored.
07:07:40omero.logging.directory=var/log/
07:07:4007:07:40## (For documentation only)
07:07:40# Whether the server log files should be rotated at a certain time
07:07:40# interval. If true, log files will be rolled over at midnight.
07:07:40# Otherwise, log files will be rolled over at a predetermined size,
07:07:40# see omero.logging.logsize for more information.
07:07:40omero.logging.timedlog=false
07:07:4007:07:40## (For documentation only)
07:07:40# If omero.logging.timedlog is false or unset, specifies the
07:07:40# maximum size of the server log files in bytes above which a
07:07:40# new log file should be created.
07:07:40omero.logging.logsize=5000000
07:07:4007:07:40## (For documentation only)
07:07:40# If omero.logging.timedlog is false or unset, specifies the
07:07:40# number of old server log files that should be kept. Old log
07:07:40# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:07:40omero.logging.lognum=9
07:07:4007:07:40## (For documentation only)
07:07:40# Specifies the threshold for the Python servers log files. Logging messages
07:07:40# which are less severe than this value will be ignored. For a list of
07:07:40# available values, see https://docs.python.org/3/library/logging.html#levels.
07:07:40omero.logging.level=20
07:07:4007:07:40#############################################
07:07:40## Ice overrides
07:07:40##
07:07:40## Though not used directly by OMERO, a number
07:07:40## of properties prefixed with "Ice.*" will
07:07:40## alter the behavior of the OMERO runtime
07:07:40## by configuring the Ice communicators. For a
07:07:40## full listing see:
07:07:40##
07:07:40## http://doc.zeroc.com/display/Ice/Property+Reference07:07:40## For more information see
07:07:40## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:07:40#############################################
07:07:4007:07:40# Disable IPv6 by setting to 0. Only needed in
07:07:40# certain situations.
07:07:40Ice.IPv6=1
07:07:4007:07:40# Glacier2Template IceSSL defaults and overrides,
07:07:40# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:07:40# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:07:40# update the corresponding IceSSL. property.
07:07:40omero.glacier2.IceSSL=
07:07:4007:07:40# Glacier2Template SSL maximum allowed protocol (mac bug)
07:07:40omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:07:40# Glacier2Template SSL allowed cipher suites
07:07:40omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:07:40# Glacier2Template SSL verification requirements
07:07:40omero.glacier2.IceSSL.VerifyPeer=0
07:07:40# Glacier2Template SSL allowed protocols
07:07:40omero.glacier2.IceSSL.Protocols=tls1
07:07:4007:07:40# Override the default set of OMERO services.
07:07:40# For example, to run OMERO.server with Blitz and Tables only
07:07:40# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:07:40# set this to ``master:Blitz-0,Tables-0``.
07:07:40# Also use this to distribute OMERO services across multiple nodes,
07:07:40# for example:
07:07:40# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:07:40# See
07:07:40# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:07:40omero.server.nodedescriptors=
07:07:4007:07:40#############################################
07:07:40## Darwin (OS X) specific defaults for templated configuration files only.
07:07:40## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:07:40## file.
07:07:40## Do not set these properties in ``omero config``, instead set the original
07:07:40## ``xxx.yyy`` property
07:07:40#############################################
07:07:40_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:07:4007:07:40## (For documentation only)
07:07:40# Name of the Python module to use when starting the Tables service
07:07:40omero.tables.module=runTables
07:07:4007:07:40#############################################
07:07:40## Server product name for release artifacts
07:07:40#############################################
07:07:40product.name=OMERO.server
07:07:4007:07:40#############################################
07:07:40### Properties below this marker are ignored by
07:07:40### omero.install.config_parser.PropertyParser
07:07:40### END
07:07:4007:07:40#############################################
07:07:40## Library versions
07:07:40#############################################
07:07:40##
07:07:40versions.findbugs=1.2.1
07:07:40versions.ice36=3.6.5
07:07:40versions.ice36_lib=36
07:07:40## internal
07:07:40versions.omeroshares36=3.6.3
07:07:40versions.omeromock36=3.6.3
07:07:40versions.icedb36=3.6.3
07:07:40versions.ipython=1.2.1
07:07:4007:07:40versions.janino=2.5.10
07:07:4007:07:40versions.reportng=1.1.1
07:07:4007:07:40versions.testng=7.5
07:07:40versions.velocity=1.4
07:07:4007:07:40versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:07:40versions.omero-scripts-url=${versions.omero-pypi}
07:07:4007:07:40###
07:07:40### Appended Values
07:07:40###
07:07:4007:07:40## Internal dependencies'
07:07:40+ echo '##
07:07:40## omero.properties
07:07:40## ----------------
07:07:40##
07:07:40## DO NOT EDIT!
07:07:40##
07:07:40##
07:07:40## Any of these properties can be altered by using `omero config`. MODIFYING
07:07:40## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:07:40## at compile time!
07:07:40##
07:07:40## For an overview of these properties, see
07:07:40## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:07:40##
07:07:40## Properties marked with "DEVELOPMENT" should not be used in production.
07:07:4007:07:40# Comma separated list of Ice transports available to clients. The default
07:07:40# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:07:40# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:07:40# will prevent all non-encrypted connections to the OMERO server.
07:07:40#
07:07:40# Additionally, there are two experimental values for using websockets:
07:07:40# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:07:40# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:07:40# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:07:40#
07:07:40# Note: When using websockets behind a web server like nginx, additional
07:07:40# configuration may be needed.
07:07:40omero.client.icetransports=ssl,tcp
07:07:4007:07:40# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:07:40# server
07:07:40omero.ports.prefix=
07:07:4007:07:40# The Glacier2 SSL port number to use
07:07:40omero.ports.ssl=4064
07:07:4007:07:40# The Glacier2 TCP port number to use (unencrypted)
07:07:40omero.ports.tcp=4063
07:07:4007:07:40# The Glacier2 WSS port number to use
07:07:40omero.ports.wss=4066
07:07:4007:07:40# The Glacier2 WS port number to use (unencrypted)
07:07:40omero.ports.ws=4065
07:07:4007:07:40# The IceGrid registry port number to use
07:07:40omero.ports.registry=4061
07:07:4007:07:40#############################################
07:07:40## JVM configuration
07:07:40##
07:07:40## Note: changes to the omero.jvmcfg properties
07:07:40## will *not* be reflected in OMERO.server
07:07:40## since they are defined in OMERO.py.
07:07:40#############################################
07:07:40## (For documentation only)
07:07:40# Memory strategy which will be used by default.
07:07:40# Options include: percent, manual
07:07:40omero.jvmcfg.strategy=percent
07:07:4007:07:40## (For documentation only)
07:07:40# Explicit value for the `-Xmx` argument, e.g.
07:07:40# "1g"
07:07:40omero.jvmcfg.heap_size=
07:07:4007:07:40## (For documentation only)
07:07:40# Explicit value for the MaxPermSize argument
07:07:40# to the JVM, e.g. "500M". Ignored for Java8+
07:07:40omero.jvmcfg.perm_gen=
07:07:4007:07:40## (For documentation only)
07:07:40# Toggles on or off heap dumps on OOMs. Default is "off".
07:07:40# The special value "tmp" will create the heap dumps in
07:07:40# your temp directory.
07:07:40omero.jvmcfg.heap_dump=
07:07:4007:07:40## (For documentation only)
07:07:40# Used only by the percent strategy. An integer between 0
07:07:40# and 100 which is the percent of active memory that will
07:07:40# be used by the service.
07:07:40omero.jvmcfg.percent=
07:07:4007:07:40## (For documentation only)
07:07:40# Contains other parameters which should be passed to the
07:07:40# JVM. The value of "append" is treated as if it were on
07:07:40# the command line so will be separated on whitespace.
07:07:40# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:07:40# results in two new arguments.
07:07:40# Note that when using `config set` from the command line
07:07:40# one may need to give a prior `--` option to prevent a value
07:07:40# starting with `-` from already being parsed as an option,
07:07:40# and values may need quoting to prevent whitespace or other
07:07:40# significant characters from being interpreted prematurely.
07:07:4007:07:40omero.jvmcfg.append=
07:07:4007:07:40## (For documentation only)
07:07:40# Manual override of the total system memory that
07:07:40# OMERO will *think* is present on the local OS (MB).
07:07:40# If unset, an attempt will be made to detect the actual
07:07:40# amount: first by using the Python library `psutil` and
07:07:40# if that is not installed, by running a Java tool. If
07:07:40# neither works, 4.0GB is assumed.
07:07:40omero.jvmcfg.system_memory=
07:07:4007:07:40## (For documentation only)
07:07:40# Suggestion for strategies as to the minimum memory
07:07:40# that they will use for calculating JVM settings (MB).
07:07:40omero.jvmcfg.min_system_memory=3414
07:07:4007:07:40## (For documentation only)
07:07:40# Suggestion for strategies as to the maximum memory
07:07:40# that they will use for calculating JVM settings (MB).
07:07:40omero.jvmcfg.max_system_memory=48000
07:07:4007:07:4007:07:40#############################################
07:07:40## Logging properties
07:07:40##
07:07:40## Note: changes to the default omero.logging values in
07:07:40## this file will *not* be reflected in OMERO.server
07:07:40## since they are defined in OMERO.py
07:07:40#############################################
07:07:4007:07:40## (For documentation only)
07:07:40# Relative server directory where the log files should be stored.
07:07:40omero.logging.directory=var/log/
07:07:4007:07:40## (For documentation only)
07:07:40# Whether the server log files should be rotated at a certain time
07:07:40# interval. If true, log files will be rolled over at midnight.
07:07:40# Otherwise, log files will be rolled over at a predetermined size,
07:07:40# see omero.logging.logsize for more information.
07:07:40omero.logging.timedlog=false
07:07:4007:07:40## (For documentation only)
07:07:40# If omero.logging.timedlog is false or unset, specifies the
07:07:40# maximum size of the server log files in bytes above which a
07:07:40# new log file should be created.
07:07:40omero.logging.logsize=5000000
07:07:4007:07:40## (For documentation only)
07:07:40# If omero.logging.timedlog is false or unset, specifies the
07:07:40# number of old server log files that should be kept. Old log
07:07:40# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:07:40omero.logging.lognum=9
07:07:4007:07:40## (For documentation only)
07:07:40# Specifies the threshold for the Python servers log files. Logging messages
07:07:40# which are less severe than this value will be ignored. For a list of
07:07:40# available values, see https://docs.python.org/3/library/logging.html#levels.
07:07:40omero.logging.level=20
07:07:4007:07:40#############################################
07:07:40## Ice overrides
07:07:40##
07:07:40## Though not used directly by OMERO, a number
07:07:40## of properties prefixed with "Ice.*" will
07:07:40## alter the behavior of the OMERO runtime
07:07:40## by configuring the Ice communicators. For a
07:07:40## full listing see:
07:07:40##
07:07:40## http://doc.zeroc.com/display/Ice/Property+Reference07:07:40## For more information see
07:07:40## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:07:40#############################################
07:07:4007:07:40# Disable IPv6 by setting to 0. Only needed in
07:07:40# certain situations.
07:07:40Ice.IPv6=1
07:07:4007:07:40# Glacier2Template IceSSL defaults and overrides,
07:07:40# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:07:40# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:07:40# update the corresponding IceSSL. property.
07:07:40omero.glacier2.IceSSL=
07:07:4007:07:40# Glacier2Template SSL maximum allowed protocol (mac bug)
07:07:40omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:07:40# Glacier2Template SSL allowed cipher suites
07:07:40omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:07:40# Glacier2Template SSL verification requirements
07:07:40omero.glacier2.IceSSL.VerifyPeer=0
07:07:40# Glacier2Template SSL allowed protocols
07:07:40omero.glacier2.IceSSL.Protocols=tls1
07:07:4007:07:40# Override the default set of OMERO services.
07:07:40# For example, to run OMERO.server with Blitz and Tables only
07:07:40# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:07:40# set this to ``master:Blitz-0,Tables-0``.
07:07:40# Also use this to distribute OMERO services across multiple nodes,
07:07:40# for example:
07:07:40# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:07:40# See
07:07:40# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:07:40omero.server.nodedescriptors=
07:07:4007:07:40#############################################
07:07:40## Darwin (OS X) specific defaults for templated configuration files only.
07:07:40## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:07:40## file.
07:07:40## Do not set these properties in ``omero config``, instead set the original
07:07:40## ``xxx.yyy`` property
07:07:40#############################################
07:07:40_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:07:4007:07:40## (For documentation only)
07:07:40# Name of the Python module to use when starting the Tables service
07:07:40omero.tables.module=runTables
07:07:4007:07:40#############################################
07:07:40## Server product name for release artifacts
07:07:40#############################################
07:07:40product.name=OMERO.server
07:07:4007:07:40#############################################
07:07:40### Properties below this marker are ignored by
07:07:40### omero.install.config_parser.PropertyParser
07:07:40### END
07:07:4007:07:40#############################################
07:07:40## Library versions
07:07:40#############################################
07:07:40##
07:07:40versions.findbugs=1.2.1
07:07:40versions.ice36=3.6.5
07:07:40versions.ice36_lib=36
07:07:40## internal
07:07:40versions.omeroshares36=3.6.3
07:07:40versions.omeromock36=3.6.3
07:07:40versions.icedb36=3.6.3
07:07:40versions.ipython=1.2.1
07:07:4007:07:40versions.janino=2.5.10
07:07:4007:07:40versions.reportng=1.1.1
07:07:4007:07:40versions.testng=7.5
07:07:40versions.velocity=1.4
07:07:4007:07:40versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:07:40versions.omero-scripts-url=${versions.omero-pypi}
07:07:4007:07:40###
07:07:40### Appended Values
07:07:40###
07:07:4007:07:40## Internal dependencies'
07:07:40+ echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/07:07:40+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive07:07:40+ echo versions.scripts-prefix=
07:07:40+ echo versions.scripts=merge_ci
07:07:40+ cat /home/omero/workspace/OMERO-push/version.properties
07:07:40+ git commit -a -m 'Add version.properties to etc/omero.properties'
07:07:40[detached HEAD 6d15fa9b03] Add version.properties to etc/omero.properties
07:07:40 1 file changed, 46 insertions(+), 7 deletions(-)
07:07:40+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
07:07:41To github.com:snoopycrimecop/openmicroscopy.git
07:07:41 + 43bd9813d6...6d15fa9b03 HEAD -> merge_ci (forced update)
07:07:41Finished: SUCCESS
