01:17:55Started by upstream project "Trigger" build number 3801:17:55originally caused by:
01:17:55 Started by timer
01:17:55Running as SYSTEM
01:17:55Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
01:17:55The recommended git tool is: NONE
01:17:55No credentials specified
01:17:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
01:17:55Fetching changes from the remote Git repository
01:17:55 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
01:17:55Fetching upstream changes from https://github.com/ome/openmicroscopy.git01:17:55 > git --version # timeout=10
01:17:55 > git --version # 'git version 2.52.0'
01:17:55 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:18:00 > git rev-parse origin/develop^{commit} # timeout=10
01:18:00Checking out Revision 81c671cab8055f5d06ef64556fd473ada8de4922 (origin/develop)
01:18:00 > git config core.sparsecheckout # timeout=10
01:18:00 > git checkout -f 81c671cab8055f5d06ef64556fd473ada8de4922 # timeout=30
01:18:02Commit message: "Merge pull request #6455 from will-moore/external_info_test_rois"
01:18:02 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
01:18:02Cleaning workspace
01:18:02 > git rev-parse --verify HEAD # timeout=10
01:18:02Resetting working tree
01:18:02 > git reset --hard # timeout=10
01:18:02 > git clean -fdx # timeout=10
01:18:02Copied 1 artifact from "OMERO-python-superbuild-build" build number 2401:18:02[OMERO-push] $ /bin/bash -xe /tmp/jenkins12113048180122368917.sh
01:18:02+ python3.11 -mvenv venv
01:18:05+ source /home/omero/workspace/OMERO-push/venv/bin/activate
01:18:05++ deactivate nondestructive
01:18:05++ '[' -n '' ']'
01:18:05++ '[' -n '' ']'
01:18:05++ hash -r
01:18:05++ '[' -n '' ']'
01:18:05++ unset VIRTUAL_ENV
01:18:05++ unset VIRTUAL_ENV_PROMPT
01:18:05++ '[' '!' nondestructive = nondestructive ']'
01:18:05++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
01:18:05++ export VIRTUAL_ENV
01:18:05++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:18:05++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:18:05++ export PATH
01:18:05++ '[' -n '' ']'
01:18:05++ '[' -z '' ']'
01:18:05++ _OLD_VIRTUAL_PS1=
01:18:05++ PS1='(venv) '
01:18:05++ export PS1
01:18:05++ VIRTUAL_ENV_PROMPT='(venv) '
01:18:05++ export VIRTUAL_ENV_PROMPT
01:18:05++ hash -r
01:18:05+ pip install -U pip
01:18:08Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2)
01:18:08+ pip install -U scc
01:18:09Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
01:18:09Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
01:18:09Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
01:18:09Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
01:18:09Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
01:18:09Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
01:18:09Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
01:18:09Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
01:18:09Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
01:18:09Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
01:18:09Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
01:18:09Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
01:18:09Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
01:18:09Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
01:18:09Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
01:18:09Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
01:18:09Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
01:18:09Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
01:18:09Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
01:18:09+ test -e src
01:18:09+ cd src
01:18:09++ git config github.user
01:18:09+ user=snoopycrimecop
01:18:09+ scc merge develop --no-ask --reset --shallow -S success-only
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Merging Pull Request(s) based on develop
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
01:18:162026-07-31 01:18:16,520 [ scc.merge] INFO Excluding Pull Request(s) without successful status
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO Repository: ome/openmicroscopy
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO Excluded PRs:
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6472 pwalczysko 'Try to fix thumb test [one,set]' (label: exclude)
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6471 pwalczysko 'Rewrite pyramid tests' (label: exclude)
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure)
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO Already up to date.
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO Merged PRs:
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO - PR 6473 sbesson 'Java skip thumbnails permission tests: use fake pyramidal images'
01:18:392026-07-31 01:18:39,817 [ scc.merge] INFO
01:18:39+ cp etc/omero.properties etc/omero.properties.bak
01:18:39+ rm etc/omero.properties
01:18:39+ touch etc/omero.properties
01:18:39++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
01:18:39+ ne=249
01:18:39++ sed -n 1,249p etc/omero.properties.bak
01:18:39+ line='##
01:18:39## omero.properties
01:18:39## ----------------
01:18:39##
01:18:39## DO NOT EDIT!
01:18:39##
01:18:39##
01:18:39## Any of these properties can be altered by using `omero config`. MODIFYING
01:18:39## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:18:39## at compile time!
01:18:39##
01:18:39## For an overview of these properties, see
01:18:39## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:18:39##
01:18:39## Properties marked with "DEVELOPMENT" should not be used in production.
01:18:3901:18:39# Comma separated list of Ice transports available to clients. The default
01:18:39# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:18:39# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:18:39# will prevent all non-encrypted connections to the OMERO server.
01:18:39#
01:18:39# Additionally, there are two experimental values for using websockets:
01:18:39# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:18:39# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:18:39# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:18:39#
01:18:39# Note: When using websockets behind a web server like nginx, additional
01:18:39# configuration may be needed.
01:18:39omero.client.icetransports=ssl,tcp
01:18:3901:18:39# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:18:39# server
01:18:39omero.ports.prefix=
01:18:3901:18:39# The Glacier2 SSL port number to use
01:18:39omero.ports.ssl=4064
01:18:3901:18:39# The Glacier2 TCP port number to use (unencrypted)
01:18:39omero.ports.tcp=4063
01:18:3901:18:39# The Glacier2 WSS port number to use
01:18:39omero.ports.wss=4066
01:18:3901:18:39# The Glacier2 WS port number to use (unencrypted)
01:18:39omero.ports.ws=4065
01:18:3901:18:39# The IceGrid registry port number to use
01:18:39omero.ports.registry=4061
01:18:3901:18:39#############################################
01:18:39## JVM configuration
01:18:39##
01:18:39## Note: changes to the omero.jvmcfg properties
01:18:39## will *not* be reflected in OMERO.server
01:18:39## since they are defined in OMERO.py.
01:18:39#############################################
01:18:39## (For documentation only)
01:18:39# Memory strategy which will be used by default.
01:18:39# Options include: percent, manual
01:18:39omero.jvmcfg.strategy=percent
01:18:3901:18:39## (For documentation only)
01:18:39# Explicit value for the `-Xmx` argument, e.g.
01:18:39# "1g"
01:18:39omero.jvmcfg.heap_size=
01:18:3901:18:39## (For documentation only)
01:18:39# Explicit value for the MaxPermSize argument
01:18:39# to the JVM, e.g. "500M". Ignored for Java8+
01:18:39omero.jvmcfg.perm_gen=
01:18:3901:18:39## (For documentation only)
01:18:39# Toggles on or off heap dumps on OOMs. Default is "off".
01:18:39# The special value "tmp" will create the heap dumps in
01:18:39# your temp directory.
01:18:39omero.jvmcfg.heap_dump=
01:18:3901:18:39## (For documentation only)
01:18:39# Used only by the percent strategy. An integer between 0
01:18:39# and 100 which is the percent of active memory that will
01:18:39# be used by the service.
01:18:39omero.jvmcfg.percent=
01:18:3901:18:39## (For documentation only)
01:18:39# Contains other parameters which should be passed to the
01:18:39# JVM. The value of "append" is treated as if it were on
01:18:39# the command line so will be separated on whitespace.
01:18:39# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:18:39# results in two new arguments.
01:18:39# Note that when using `config set` from the command line
01:18:39# one may need to give a prior `--` option to prevent a value
01:18:39# starting with `-` from already being parsed as an option,
01:18:39# and values may need quoting to prevent whitespace or other
01:18:39# significant characters from being interpreted prematurely.
01:18:3901:18:39omero.jvmcfg.append=
01:18:3901:18:39## (For documentation only)
01:18:39# Manual override of the total system memory that
01:18:39# OMERO will *think* is present on the local OS (MB).
01:18:39# If unset, an attempt will be made to detect the actual
01:18:39# amount: first by using the Python library `psutil` and
01:18:39# if that is not installed, by running a Java tool. If
01:18:39# neither works, 4.0GB is assumed.
01:18:39omero.jvmcfg.system_memory=
01:18:3901:18:39## (For documentation only)
01:18:39# Suggestion for strategies as to the minimum memory
01:18:39# that they will use for calculating JVM settings (MB).
01:18:39omero.jvmcfg.min_system_memory=3414
01:18:3901:18:39## (For documentation only)
01:18:39# Suggestion for strategies as to the maximum memory
01:18:39# that they will use for calculating JVM settings (MB).
01:18:39omero.jvmcfg.max_system_memory=48000
01:18:3901:18:3901:18:39#############################################
01:18:39## Logging properties
01:18:39##
01:18:39## Note: changes to the default omero.logging values in
01:18:39## this file will *not* be reflected in OMERO.server
01:18:39## since they are defined in OMERO.py
01:18:39#############################################
01:18:3901:18:39## (For documentation only)
01:18:39# Relative server directory where the log files should be stored.
01:18:39omero.logging.directory=var/log/
01:18:3901:18:39## (For documentation only)
01:18:39# Whether the server log files should be rotated at a certain time
01:18:39# interval. If true, log files will be rolled over at midnight.
01:18:39# Otherwise, log files will be rolled over at a predetermined size,
01:18:39# see omero.logging.logsize for more information.
01:18:39omero.logging.timedlog=false
01:18:3901:18:39## (For documentation only)
01:18:39# If omero.logging.timedlog is false or unset, specifies the
01:18:39# maximum size of the server log files in bytes above which a
01:18:39# new log file should be created.
01:18:39omero.logging.logsize=5000000
01:18:3901:18:39## (For documentation only)
01:18:39# If omero.logging.timedlog is false or unset, specifies the
01:18:39# number of old server log files that should be kept. Old log
01:18:39# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:18:39omero.logging.lognum=9
01:18:3901:18:39## (For documentation only)
01:18:39# Specifies the threshold for the Python servers log files. Logging messages
01:18:39# which are less severe than this value will be ignored. For a list of
01:18:39# available values, see https://docs.python.org/3/library/logging.html#levels.
01:18:39omero.logging.level=20
01:18:3901:18:39#############################################
01:18:39## Ice overrides
01:18:39##
01:18:39## Though not used directly by OMERO, a number
01:18:39## of properties prefixed with "Ice.*" will
01:18:39## alter the behavior of the OMERO runtime
01:18:39## by configuring the Ice communicators. For a
01:18:39## full listing see:
01:18:39##
01:18:39## http://doc.zeroc.com/display/Ice/Property+Reference01:18:39## For more information see
01:18:39## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:18:39#############################################
01:18:3901:18:39# Disable IPv6 by setting to 0. Only needed in
01:18:39# certain situations.
01:18:39Ice.IPv6=1
01:18:3901:18:39# Glacier2Template IceSSL defaults and overrides,
01:18:39# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:18:39# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:18:39# update the corresponding IceSSL. property.
01:18:39omero.glacier2.IceSSL=
01:18:3901:18:39# Glacier2Template SSL maximum allowed protocol (mac bug)
01:18:39omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:18:39# Glacier2Template SSL allowed cipher suites
01:18:39omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:18:39# Glacier2Template SSL verification requirements
01:18:39omero.glacier2.IceSSL.VerifyPeer=0
01:18:39# Glacier2Template SSL allowed protocols
01:18:39omero.glacier2.IceSSL.Protocols=tls1
01:18:3901:18:39# Override the default set of OMERO services.
01:18:39# For example, to run OMERO.server with Blitz and Tables only
01:18:39# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:18:39# set this to ``master:Blitz-0,Tables-0``.
01:18:39# Also use this to distribute OMERO services across multiple nodes,
01:18:39# for example:
01:18:39# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:18:39# See
01:18:39# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:18:39omero.server.nodedescriptors=
01:18:3901:18:39#############################################
01:18:39## Darwin (OS X) specific defaults for templated configuration files only.
01:18:39## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:18:39## file.
01:18:39## Do not set these properties in ``omero config``, instead set the original
01:18:39## ``xxx.yyy`` property
01:18:39#############################################
01:18:39_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:18:3901:18:39## (For documentation only)
01:18:39# Name of the Python module to use when starting the Tables service
01:18:39omero.tables.module=runTables
01:18:3901:18:39#############################################
01:18:39## Server product name for release artifacts
01:18:39#############################################
01:18:39product.name=OMERO.server
01:18:3901:18:39#############################################
01:18:39### Properties below this marker are ignored by
01:18:39### omero.install.config_parser.PropertyParser
01:18:39### END
01:18:3901:18:39#############################################
01:18:39## Library versions
01:18:39#############################################
01:18:39##
01:18:39versions.findbugs=1.2.1
01:18:39versions.ice36=3.6.5
01:18:39versions.ice36_lib=36
01:18:39## internal
01:18:39versions.omeroshares36=3.6.3
01:18:39versions.omeromock36=3.6.3
01:18:39versions.icedb36=3.6.3
01:18:39versions.ipython=1.2.1
01:18:3901:18:39versions.janino=2.5.10
01:18:3901:18:39versions.reportng=1.1.1
01:18:3901:18:39versions.testng=7.5
01:18:39versions.velocity=1.4
01:18:3901:18:39versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:18:39versions.omero-scripts-url=${versions.omero-pypi}
01:18:3901:18:39###
01:18:39### Appended Values
01:18:39###
01:18:3901:18:39## Internal dependencies'
01:18:39+ echo '##
01:18:39## omero.properties
01:18:39## ----------------
01:18:39##
01:18:39## DO NOT EDIT!
01:18:39##
01:18:39##
01:18:39## Any of these properties can be altered by using `omero config`. MODIFYING
01:18:39## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:18:39## at compile time!
01:18:39##
01:18:39## For an overview of these properties, see
01:18:39## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:18:39##
01:18:39## Properties marked with "DEVELOPMENT" should not be used in production.
01:18:3901:18:39# Comma separated list of Ice transports available to clients. The default
01:18:39# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:18:39# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:18:39# will prevent all non-encrypted connections to the OMERO server.
01:18:39#
01:18:39# Additionally, there are two experimental values for using websockets:
01:18:39# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:18:39# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:18:39# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:18:39#
01:18:39# Note: When using websockets behind a web server like nginx, additional
01:18:39# configuration may be needed.
01:18:39omero.client.icetransports=ssl,tcp
01:18:3901:18:39# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:18:39# server
01:18:39omero.ports.prefix=
01:18:3901:18:39# The Glacier2 SSL port number to use
01:18:39omero.ports.ssl=4064
01:18:3901:18:39# The Glacier2 TCP port number to use (unencrypted)
01:18:39omero.ports.tcp=4063
01:18:3901:18:39# The Glacier2 WSS port number to use
01:18:39omero.ports.wss=4066
01:18:3901:18:39# The Glacier2 WS port number to use (unencrypted)
01:18:39omero.ports.ws=4065
01:18:3901:18:39# The IceGrid registry port number to use
01:18:39omero.ports.registry=4061
01:18:3901:18:39#############################################
01:18:39## JVM configuration
01:18:39##
01:18:39## Note: changes to the omero.jvmcfg properties
01:18:39## will *not* be reflected in OMERO.server
01:18:39## since they are defined in OMERO.py.
01:18:39#############################################
01:18:39## (For documentation only)
01:18:39# Memory strategy which will be used by default.
01:18:39# Options include: percent, manual
01:18:39omero.jvmcfg.strategy=percent
01:18:3901:18:39## (For documentation only)
01:18:39# Explicit value for the `-Xmx` argument, e.g.
01:18:39# "1g"
01:18:39omero.jvmcfg.heap_size=
01:18:3901:18:39## (For documentation only)
01:18:39# Explicit value for the MaxPermSize argument
01:18:39# to the JVM, e.g. "500M". Ignored for Java8+
01:18:39omero.jvmcfg.perm_gen=
01:18:3901:18:39## (For documentation only)
01:18:39# Toggles on or off heap dumps on OOMs. Default is "off".
01:18:39# The special value "tmp" will create the heap dumps in
01:18:39# your temp directory.
01:18:39omero.jvmcfg.heap_dump=
01:18:3901:18:39## (For documentation only)
01:18:39# Used only by the percent strategy. An integer between 0
01:18:39# and 100 which is the percent of active memory that will
01:18:39# be used by the service.
01:18:39omero.jvmcfg.percent=
01:18:3901:18:39## (For documentation only)
01:18:39# Contains other parameters which should be passed to the
01:18:39# JVM. The value of "append" is treated as if it were on
01:18:39# the command line so will be separated on whitespace.
01:18:39# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:18:39# results in two new arguments.
01:18:39# Note that when using `config set` from the command line
01:18:39# one may need to give a prior `--` option to prevent a value
01:18:39# starting with `-` from already being parsed as an option,
01:18:39# and values may need quoting to prevent whitespace or other
01:18:39# significant characters from being interpreted prematurely.
01:18:3901:18:39omero.jvmcfg.append=
01:18:3901:18:39## (For documentation only)
01:18:39# Manual override of the total system memory that
01:18:39# OMERO will *think* is present on the local OS (MB).
01:18:39# If unset, an attempt will be made to detect the actual
01:18:39# amount: first by using the Python library `psutil` and
01:18:39# if that is not installed, by running a Java tool. If
01:18:39# neither works, 4.0GB is assumed.
01:18:39omero.jvmcfg.system_memory=
01:18:3901:18:39## (For documentation only)
01:18:39# Suggestion for strategies as to the minimum memory
01:18:39# that they will use for calculating JVM settings (MB).
01:18:39omero.jvmcfg.min_system_memory=3414
01:18:3901:18:39## (For documentation only)
01:18:39# Suggestion for strategies as to the maximum memory
01:18:39# that they will use for calculating JVM settings (MB).
01:18:39omero.jvmcfg.max_system_memory=48000
01:18:3901:18:3901:18:39#############################################
01:18:39## Logging properties
01:18:39##
01:18:39## Note: changes to the default omero.logging values in
01:18:39## this file will *not* be reflected in OMERO.server
01:18:39## since they are defined in OMERO.py
01:18:39#############################################
01:18:3901:18:39## (For documentation only)
01:18:39# Relative server directory where the log files should be stored.
01:18:39omero.logging.directory=var/log/
01:18:3901:18:39## (For documentation only)
01:18:39# Whether the server log files should be rotated at a certain time
01:18:39# interval. If true, log files will be rolled over at midnight.
01:18:39# Otherwise, log files will be rolled over at a predetermined size,
01:18:39# see omero.logging.logsize for more information.
01:18:39omero.logging.timedlog=false
01:18:3901:18:39## (For documentation only)
01:18:39# If omero.logging.timedlog is false or unset, specifies the
01:18:39# maximum size of the server log files in bytes above which a
01:18:39# new log file should be created.
01:18:39omero.logging.logsize=5000000
01:18:3901:18:39## (For documentation only)
01:18:39# If omero.logging.timedlog is false or unset, specifies the
01:18:39# number of old server log files that should be kept. Old log
01:18:39# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:18:39omero.logging.lognum=9
01:18:3901:18:39## (For documentation only)
01:18:39# Specifies the threshold for the Python servers log files. Logging messages
01:18:39# which are less severe than this value will be ignored. For a list of
01:18:39# available values, see https://docs.python.org/3/library/logging.html#levels.
01:18:39omero.logging.level=20
01:18:3901:18:39#############################################
01:18:39## Ice overrides
01:18:39##
01:18:39## Though not used directly by OMERO, a number
01:18:39## of properties prefixed with "Ice.*" will
01:18:39## alter the behavior of the OMERO runtime
01:18:39## by configuring the Ice communicators. For a
01:18:39## full listing see:
01:18:39##
01:18:39## http://doc.zeroc.com/display/Ice/Property+Reference01:18:39## For more information see
01:18:39## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:18:39#############################################
01:18:3901:18:39# Disable IPv6 by setting to 0. Only needed in
01:18:39# certain situations.
01:18:39Ice.IPv6=1
01:18:3901:18:39# Glacier2Template IceSSL defaults and overrides,
01:18:39# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:18:39# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:18:39# update the corresponding IceSSL. property.
01:18:39omero.glacier2.IceSSL=
01:18:3901:18:39# Glacier2Template SSL maximum allowed protocol (mac bug)
01:18:39omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:18:39# Glacier2Template SSL allowed cipher suites
01:18:39omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:18:39# Glacier2Template SSL verification requirements
01:18:39omero.glacier2.IceSSL.VerifyPeer=0
01:18:39# Glacier2Template SSL allowed protocols
01:18:39omero.glacier2.IceSSL.Protocols=tls1
01:18:3901:18:39# Override the default set of OMERO services.
01:18:39# For example, to run OMERO.server with Blitz and Tables only
01:18:39# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:18:39# set this to ``master:Blitz-0,Tables-0``.
01:18:39# Also use this to distribute OMERO services across multiple nodes,
01:18:39# for example:
01:18:39# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:18:39# See
01:18:39# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:18:39omero.server.nodedescriptors=
01:18:3901:18:39#############################################
01:18:39## Darwin (OS X) specific defaults for templated configuration files only.
01:18:39## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:18:39## file.
01:18:39## Do not set these properties in ``omero config``, instead set the original
01:18:39## ``xxx.yyy`` property
01:18:39#############################################
01:18:39_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:18:3901:18:39## (For documentation only)
01:18:39# Name of the Python module to use when starting the Tables service
01:18:39omero.tables.module=runTables
01:18:3901:18:39#############################################
01:18:39## Server product name for release artifacts
01:18:39#############################################
01:18:39product.name=OMERO.server
01:18:3901:18:39#############################################
01:18:39### Properties below this marker are ignored by
01:18:39### omero.install.config_parser.PropertyParser
01:18:39### END
01:18:3901:18:39#############################################
01:18:39## Library versions
01:18:39#############################################
01:18:39##
01:18:39versions.findbugs=1.2.1
01:18:39versions.ice36=3.6.5
01:18:39versions.ice36_lib=36
01:18:39## internal
01:18:39versions.omeroshares36=3.6.3
01:18:39versions.omeromock36=3.6.3
01:18:39versions.icedb36=3.6.3
01:18:39versions.ipython=1.2.1
01:18:3901:18:39versions.janino=2.5.10
01:18:3901:18:39versions.reportng=1.1.1
01:18:3901:18:39versions.testng=7.5
01:18:39versions.velocity=1.4
01:18:3901:18:39versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:18:39versions.omero-scripts-url=${versions.omero-pypi}
01:18:3901:18:39###
01:18:39### Appended Values
01:18:39###
01:18:3901:18:39## Internal dependencies'
01:18:39+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/01:18:39+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive01:18:39+ echo versions.scripts-prefix=
01:18:39+ echo versions.scripts=merge_ci
01:18:39+ cat /home/omero/workspace/OMERO-push/version.properties
01:18:39+ git commit -a -m 'Add version.properties to etc/omero.properties'
01:18:40[detached HEAD f8e321e055] Add version.properties to etc/omero.properties
01:18:40 1 file changed, 46 insertions(+), 6 deletions(-)
01:18:40+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
01:18:43To github.com:snoopycrimecop/openmicroscopy.git
01:18:43 + fb3ea5eb7e...f8e321e055 HEAD -> merge_ci (forced update)
01:18:43Finished: SUCCESS
