10:22:28Started by upstream project "Trigger" build number 34110:22:28originally caused by:
10:22:28 Started by user devspace10:22:28Running as SYSTEM
10:22:28Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
10:22:28The recommended git tool is: NONE
10:22:28No credentials specified
10:22:28 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
10:22:28Fetching changes from the remote Git repository
10:22:28 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
10:22:28Fetching upstream changes from https://github.com/ome/openmicroscopy.git10:22:28 > git --version # timeout=10
10:22:28 > git --version # 'git version 2.43.5'
10:22:28 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:22:31 > git rev-parse origin/develop^{commit} # timeout=10
10:22:31Checking out Revision 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 (origin/develop)
10:22:31 > git config core.sparsecheckout # timeout=10
10:22:31 > git checkout -f 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 # timeout=30
10:22:32Commit message: "Merge pull request #6409 from sbesson/jul_jcl_2.x"
10:22:32 > git rev-list --no-walk 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 # timeout=10
10:22:33Cleaning workspace
10:22:33 > git rev-parse --verify HEAD # timeout=10
10:22:33Resetting working tree
10:22:33 > git reset --hard # timeout=10
10:22:33 > git clean -fdx # timeout=10
10:22:33Copied 1 artifact from "OMERO-python-superbuild-build" build number 28710:22:33[OMERO-push] $ /bin/bash -xe /tmp/jenkins4283359324960667581.sh
10:22:33+ python3 -mvenv venv
10:22:36+ source /home/omero/workspace/OMERO-push/venv/bin/activate
10:22:36++ deactivate nondestructive
10:22:36++ '[' -n '' ']'
10:22:36++ '[' -n '' ']'
10:22:36++ '[' -n /bin/bash -o -n '' ']'
10:22:36++ hash -r
10:22:36++ '[' -n '' ']'
10:22:36++ unset VIRTUAL_ENV
10:22:36++ '[' '!' nondestructive = nondestructive ']'
10:22:36++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
10:22:36++ export VIRTUAL_ENV
10:22:36++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:22:36++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:22:36++ export PATH
10:22:36++ '[' -n '' ']'
10:22:36++ '[' -z '' ']'
10:22:36++ _OLD_VIRTUAL_PS1=
10:22:36++ PS1='(venv) '
10:22:36++ export PS1
10:22:36++ '[' -n /bin/bash -o -n '' ']'
10:22:36++ hash -r
10:22:36+ pip install -U pip
10:22:41Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.3.1)
10:22:41+ pip install -U scc
10:22:41Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
10:22:41Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
10:22:41Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
10:22:41Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
10:22:41Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
10:22:42Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
10:22:42Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
10:22:42Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
10:22:42Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
10:22:42Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
10:22:42Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
10:22:42Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
10:22:42Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
10:22:42Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
10:22:42Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
10:22:42Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
10:22:42Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
10:22:42Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
10:22:42Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
10:22:42Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
10:22:42Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
10:22:42Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
10:22:42+ test -e src
10:22:42+ cd src
10:22:42++ git config github.user
10:22:42+ user=snoopycrimecop
10:22:42+ scc merge develop --no-ask --reset --shallow -S success-only
10:22:482025-01-14 10:22:48,498 [ scc.merge] INFO Merging Pull Request(s) based on develop
10:22:482025-01-14 10:22:48,498 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
10:22:482025-01-14 10:22:48,498 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
10:22:482025-01-14 10:22:48,498 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
10:22:482025-01-14 10:22:48,499 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
10:22:482025-01-14 10:22:48,499 [ scc.merge] INFO Excluding Pull Request(s) without successful status
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO Repository: ome/openmicroscopy
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO Excluded PRs:
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO Already up to date.
10:23:022025-01-14 10:23:02,794 [ scc.merge] INFO
10:23:022025-01-14 10:23:02,795 [ scc.merge] INFO Merged PRs:
10:23:022025-01-14 10:23:02,795 [ scc.merge] INFO - PR 6309 jburel 'add try block'
10:23:022025-01-14 10:23:02,795 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
10:23:022025-01-14 10:23:02,795 [ scc.merge] INFO - PR 6417 snoopycrimecop 'update dependencies'
10:23:022025-01-14 10:23:02,795 [ scc.merge] INFO
10:23:02+ cp etc/omero.properties etc/omero.properties.bak
10:23:02+ rm etc/omero.properties
10:23:02+ touch etc/omero.properties
10:23:02++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
10:23:02+ ne=249
10:23:02++ sed -n 1,249p etc/omero.properties.bak
10:23:02+ line='##
10:23:02## omero.properties
10:23:02## ----------------
10:23:02##
10:23:02## DO NOT EDIT!
10:23:02##
10:23:02##
10:23:02## Any of these properties can be altered by using `omero config`. MODIFYING
10:23:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
10:23:02## at compile time!
10:23:02##
10:23:02## For an overview of these properties, see
10:23:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html10:23:02##
10:23:02## Properties marked with "DEVELOPMENT" should not be used in production.
10:23:0210:23:02# Comma separated list of Ice transports available to clients. The default
10:23:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
10:23:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
10:23:02# will prevent all non-encrypted connections to the OMERO server.
10:23:02#
10:23:02# Additionally, there are two experimental values for using websockets:
10:23:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
10:23:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
10:23:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
10:23:02#
10:23:02# Note: When using websockets behind a web server like nginx, additional
10:23:02# configuration may be needed.
10:23:02omero.client.icetransports=ssl,tcp
10:23:0210:23:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
10:23:02# server
10:23:02omero.ports.prefix=
10:23:0210:23:02# The Glacier2 SSL port number to use
10:23:02omero.ports.ssl=4064
10:23:0210:23:02# The Glacier2 TCP port number to use (unencrypted)
10:23:02omero.ports.tcp=4063
10:23:0210:23:02# The Glacier2 WSS port number to use
10:23:02omero.ports.wss=4066
10:23:0210:23:02# The Glacier2 WS port number to use (unencrypted)
10:23:02omero.ports.ws=4065
10:23:0210:23:02# The IceGrid registry port number to use
10:23:02omero.ports.registry=4061
10:23:0210:23:02#############################################
10:23:02## JVM configuration
10:23:02##
10:23:02## Note: changes to the omero.jvmcfg properties
10:23:02## will *not* be reflected in OMERO.server
10:23:02## since they are defined in OMERO.py.
10:23:02#############################################
10:23:02## (For documentation only)
10:23:02# Memory strategy which will be used by default.
10:23:02# Options include: percent, manual
10:23:02omero.jvmcfg.strategy=percent
10:23:0210:23:02## (For documentation only)
10:23:02# Explicit value for the `-Xmx` argument, e.g.
10:23:02# "1g"
10:23:02omero.jvmcfg.heap_size=
10:23:0210:23:02## (For documentation only)
10:23:02# Explicit value for the MaxPermSize argument
10:23:02# to the JVM, e.g. "500M". Ignored for Java8+
10:23:02omero.jvmcfg.perm_gen=
10:23:0210:23:02## (For documentation only)
10:23:02# Toggles on or off heap dumps on OOMs. Default is "off".
10:23:02# The special value "tmp" will create the heap dumps in
10:23:02# your temp directory.
10:23:02omero.jvmcfg.heap_dump=
10:23:0210:23:02## (For documentation only)
10:23:02# Used only by the percent strategy. An integer between 0
10:23:02# and 100 which is the percent of active memory that will
10:23:02# be used by the service.
10:23:02omero.jvmcfg.percent=
10:23:0210:23:02## (For documentation only)
10:23:02# Contains other parameters which should be passed to the
10:23:02# JVM. The value of "append" is treated as if it were on
10:23:02# the command line so will be separated on whitespace.
10:23:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
10:23:02# results in two new arguments.
10:23:02# Note that when using `config set` from the command line
10:23:02# one may need to give a prior `--` option to prevent a value
10:23:02# starting with `-` from already being parsed as an option,
10:23:02# and values may need quoting to prevent whitespace or other
10:23:02# significant characters from being interpreted prematurely.
10:23:0210:23:02omero.jvmcfg.append=
10:23:0210:23:02## (For documentation only)
10:23:02# Manual override of the total system memory that
10:23:02# OMERO will *think* is present on the local OS (MB).
10:23:02# If unset, an attempt will be made to detect the actual
10:23:02# amount: first by using the Python library `psutil` and
10:23:02# if that is not installed, by running a Java tool. If
10:23:02# neither works, 4.0GB is assumed.
10:23:02omero.jvmcfg.system_memory=
10:23:0210:23:02## (For documentation only)
10:23:02# Suggestion for strategies as to the minimum memory
10:23:02# that they will use for calculating JVM settings (MB).
10:23:02omero.jvmcfg.min_system_memory=3414
10:23:0210:23:02## (For documentation only)
10:23:02# Suggestion for strategies as to the maximum memory
10:23:02# that they will use for calculating JVM settings (MB).
10:23:02omero.jvmcfg.max_system_memory=48000
10:23:0210:23:0210:23:02#############################################
10:23:02## Logging properties
10:23:02##
10:23:02## Note: changes to the default omero.logging values in
10:23:02## this file will *not* be reflected in OMERO.server
10:23:02## since they are defined in OMERO.py
10:23:02#############################################
10:23:0210:23:02## (For documentation only)
10:23:02# Relative server directory where the log files should be stored.
10:23:02omero.logging.directory=var/log/
10:23:0210:23:02## (For documentation only)
10:23:02# Whether the server log files should be rotated at a certain time
10:23:02# interval. If true, log files will be rolled over at midnight.
10:23:02# Otherwise, log files will be rolled over at a predetermined size,
10:23:02# see omero.logging.logsize for more information.
10:23:02omero.logging.timedlog=false
10:23:0210:23:02## (For documentation only)
10:23:02# If omero.logging.timedlog is false or unset, specifies the
10:23:02# maximum size of the server log files in bytes above which a
10:23:02# new log file should be created.
10:23:02omero.logging.logsize=5000000
10:23:0210:23:02## (For documentation only)
10:23:02# If omero.logging.timedlog is false or unset, specifies the
10:23:02# number of old server log files that should be kept. Old log
10:23:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
10:23:02omero.logging.lognum=9
10:23:0210:23:02## (For documentation only)
10:23:02# Specifies the threshold for the Python servers log files. Logging messages
10:23:02# which are less severe than this value will be ignored. For a list of
10:23:02# available values, see https://docs.python.org/3/library/logging.html#levels.
10:23:02omero.logging.level=20
10:23:0210:23:02#############################################
10:23:02## Ice overrides
10:23:02##
10:23:02## Though not used directly by OMERO, a number
10:23:02## of properties prefixed with "Ice.*" will
10:23:02## alter the behavior of the OMERO runtime
10:23:02## by configuring the Ice communicators. For a
10:23:02## full listing see:
10:23:02##
10:23:02## http://doc.zeroc.com/display/Ice/Property+Reference10:23:02## For more information see
10:23:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start10:23:02#############################################
10:23:0210:23:02# Disable IPv6 by setting to 0. Only needed in
10:23:02# certain situations.
10:23:02Ice.IPv6=1
10:23:0210:23:02# Glacier2Template IceSSL defaults and overrides,
10:23:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
10:23:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
10:23:02# update the corresponding IceSSL. property.
10:23:02omero.glacier2.IceSSL=
10:23:0210:23:02# Glacier2Template SSL maximum allowed protocol (mac bug)
10:23:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
10:23:02# Glacier2Template SSL allowed cipher suites
10:23:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
10:23:02# Glacier2Template SSL verification requirements
10:23:02omero.glacier2.IceSSL.VerifyPeer=0
10:23:02# Glacier2Template SSL allowed protocols
10:23:02omero.glacier2.IceSSL.Protocols=tls1
10:23:0210:23:02# Override the default set of OMERO services.
10:23:02# For example, to run OMERO.server with Blitz and Tables only
10:23:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
10:23:02# set this to ``master:Blitz-0,Tables-0``.
10:23:02# Also use this to distribute OMERO services across multiple nodes,
10:23:02# for example:
10:23:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
10:23:02# See
10:23:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples10:23:02omero.server.nodedescriptors=
10:23:0210:23:02#############################################
10:23:02## Darwin (OS X) specific defaults for templated configuration files only.
10:23:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
10:23:02## file.
10:23:02## Do not set these properties in ``omero config``, instead set the original
10:23:02## ``xxx.yyy`` property
10:23:02#############################################
10:23:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
10:23:0210:23:02## (For documentation only)
10:23:02# Name of the Python module to use when starting the Tables service
10:23:02omero.tables.module=runTables
10:23:0210:23:02#############################################
10:23:02## Server product name for release artifacts
10:23:02#############################################
10:23:02product.name=OMERO.server
10:23:0210:23:02#############################################
10:23:02### Properties below this marker are ignored by
10:23:02### omero.install.config_parser.PropertyParser
10:23:02### END
10:23:0210:23:02#############################################
10:23:02## Library versions
10:23:02#############################################
10:23:02##
10:23:02versions.findbugs=1.2.1
10:23:02versions.ice36=3.6.5
10:23:02versions.ice36_lib=36
10:23:02## internal
10:23:02versions.omeroshares36=3.6.3
10:23:02versions.omeromock36=3.6.3
10:23:02versions.icedb36=3.6.3
10:23:02versions.ipython=1.2.1
10:23:0210:23:02versions.janino=2.5.10
10:23:0210:23:02versions.reportng=1.1.1
10:23:0210:23:02versions.testng=7.5
10:23:02versions.velocity=1.4
10:23:0210:23:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE10:23:02versions.omero-scripts-url=${versions.omero-pypi}
10:23:0210:23:02###
10:23:02### Appended Values
10:23:02###
10:23:0210:23:02## Internal dependencies'
10:23:02+ echo '##
10:23:02## omero.properties
10:23:02## ----------------
10:23:02##
10:23:02## DO NOT EDIT!
10:23:02##
10:23:02##
10:23:02## Any of these properties can be altered by using `omero config`. MODIFYING
10:23:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
10:23:02## at compile time!
10:23:02##
10:23:02## For an overview of these properties, see
10:23:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html10:23:02##
10:23:02## Properties marked with "DEVELOPMENT" should not be used in production.
10:23:0210:23:02# Comma separated list of Ice transports available to clients. The default
10:23:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
10:23:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
10:23:02# will prevent all non-encrypted connections to the OMERO server.
10:23:02#
10:23:02# Additionally, there are two experimental values for using websockets:
10:23:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
10:23:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
10:23:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
10:23:02#
10:23:02# Note: When using websockets behind a web server like nginx, additional
10:23:02# configuration may be needed.
10:23:02omero.client.icetransports=ssl,tcp
10:23:0210:23:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
10:23:02# server
10:23:02omero.ports.prefix=
10:23:0210:23:02# The Glacier2 SSL port number to use
10:23:02omero.ports.ssl=4064
10:23:0210:23:02# The Glacier2 TCP port number to use (unencrypted)
10:23:02omero.ports.tcp=4063
10:23:0210:23:02# The Glacier2 WSS port number to use
10:23:02omero.ports.wss=4066
10:23:0210:23:02# The Glacier2 WS port number to use (unencrypted)
10:23:02omero.ports.ws=4065
10:23:0210:23:02# The IceGrid registry port number to use
10:23:02omero.ports.registry=4061
10:23:0210:23:02#############################################
10:23:02## JVM configuration
10:23:02##
10:23:02## Note: changes to the omero.jvmcfg properties
10:23:02## will *not* be reflected in OMERO.server
10:23:02## since they are defined in OMERO.py.
10:23:02#############################################
10:23:02## (For documentation only)
10:23:02# Memory strategy which will be used by default.
10:23:02# Options include: percent, manual
10:23:02omero.jvmcfg.strategy=percent
10:23:0210:23:02## (For documentation only)
10:23:02# Explicit value for the `-Xmx` argument, e.g.
10:23:02# "1g"
10:23:02omero.jvmcfg.heap_size=
10:23:0210:23:02## (For documentation only)
10:23:02# Explicit value for the MaxPermSize argument
10:23:02# to the JVM, e.g. "500M". Ignored for Java8+
10:23:02omero.jvmcfg.perm_gen=
10:23:0210:23:02## (For documentation only)
10:23:02# Toggles on or off heap dumps on OOMs. Default is "off".
10:23:02# The special value "tmp" will create the heap dumps in
10:23:02# your temp directory.
10:23:02omero.jvmcfg.heap_dump=
10:23:0210:23:02## (For documentation only)
10:23:02# Used only by the percent strategy. An integer between 0
10:23:02# and 100 which is the percent of active memory that will
10:23:02# be used by the service.
10:23:02omero.jvmcfg.percent=
10:23:0210:23:02## (For documentation only)
10:23:02# Contains other parameters which should be passed to the
10:23:02# JVM. The value of "append" is treated as if it were on
10:23:02# the command line so will be separated on whitespace.
10:23:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
10:23:02# results in two new arguments.
10:23:02# Note that when using `config set` from the command line
10:23:02# one may need to give a prior `--` option to prevent a value
10:23:02# starting with `-` from already being parsed as an option,
10:23:02# and values may need quoting to prevent whitespace or other
10:23:02# significant characters from being interpreted prematurely.
10:23:0210:23:02omero.jvmcfg.append=
10:23:0210:23:02## (For documentation only)
10:23:02# Manual override of the total system memory that
10:23:02# OMERO will *think* is present on the local OS (MB).
10:23:02# If unset, an attempt will be made to detect the actual
10:23:02# amount: first by using the Python library `psutil` and
10:23:02# if that is not installed, by running a Java tool. If
10:23:02# neither works, 4.0GB is assumed.
10:23:02omero.jvmcfg.system_memory=
10:23:0210:23:02## (For documentation only)
10:23:02# Suggestion for strategies as to the minimum memory
10:23:02# that they will use for calculating JVM settings (MB).
10:23:02omero.jvmcfg.min_system_memory=3414
10:23:0210:23:02## (For documentation only)
10:23:02# Suggestion for strategies as to the maximum memory
10:23:02# that they will use for calculating JVM settings (MB).
10:23:02omero.jvmcfg.max_system_memory=48000
10:23:0210:23:0210:23:02#############################################
10:23:02## Logging properties
10:23:02##
10:23:02## Note: changes to the default omero.logging values in
10:23:02## this file will *not* be reflected in OMERO.server
10:23:02## since they are defined in OMERO.py
10:23:02#############################################
10:23:0210:23:02## (For documentation only)
10:23:02# Relative server directory where the log files should be stored.
10:23:02omero.logging.directory=var/log/
10:23:0210:23:02## (For documentation only)
10:23:02# Whether the server log files should be rotated at a certain time
10:23:02# interval. If true, log files will be rolled over at midnight.
10:23:02# Otherwise, log files will be rolled over at a predetermined size,
10:23:02# see omero.logging.logsize for more information.
10:23:02omero.logging.timedlog=false
10:23:0210:23:02## (For documentation only)
10:23:02# If omero.logging.timedlog is false or unset, specifies the
10:23:02# maximum size of the server log files in bytes above which a
10:23:02# new log file should be created.
10:23:02omero.logging.logsize=5000000
10:23:0210:23:02## (For documentation only)
10:23:02# If omero.logging.timedlog is false or unset, specifies the
10:23:02# number of old server log files that should be kept. Old log
10:23:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
10:23:02omero.logging.lognum=9
10:23:0210:23:02## (For documentation only)
10:23:02# Specifies the threshold for the Python servers log files. Logging messages
10:23:02# which are less severe than this value will be ignored. For a list of
10:23:02# available values, see https://docs.python.org/3/library/logging.html#levels.
10:23:02omero.logging.level=20
10:23:0210:23:02#############################################
10:23:02## Ice overrides
10:23:02##
10:23:02## Though not used directly by OMERO, a number
10:23:02## of properties prefixed with "Ice.*" will
10:23:02## alter the behavior of the OMERO runtime
10:23:02## by configuring the Ice communicators. For a
10:23:02## full listing see:
10:23:02##
10:23:02## http://doc.zeroc.com/display/Ice/Property+Reference10:23:02## For more information see
10:23:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start10:23:02#############################################
10:23:0210:23:02# Disable IPv6 by setting to 0. Only needed in
10:23:02# certain situations.
10:23:02Ice.IPv6=1
10:23:0210:23:02# Glacier2Template IceSSL defaults and overrides,
10:23:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
10:23:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
10:23:02# update the corresponding IceSSL. property.
10:23:02omero.glacier2.IceSSL=
10:23:0210:23:02# Glacier2Template SSL maximum allowed protocol (mac bug)
10:23:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
10:23:02# Glacier2Template SSL allowed cipher suites
10:23:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
10:23:02# Glacier2Template SSL verification requirements
10:23:02omero.glacier2.IceSSL.VerifyPeer=0
10:23:02# Glacier2Template SSL allowed protocols
10:23:02omero.glacier2.IceSSL.Protocols=tls1
10:23:0210:23:02# Override the default set of OMERO services.
10:23:02# For example, to run OMERO.server with Blitz and Tables only
10:23:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
10:23:02# set this to ``master:Blitz-0,Tables-0``.
10:23:02# Also use this to distribute OMERO services across multiple nodes,
10:23:02# for example:
10:23:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
10:23:02# See
10:23:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples10:23:02omero.server.nodedescriptors=
10:23:0210:23:02#############################################
10:23:02## Darwin (OS X) specific defaults for templated configuration files only.
10:23:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
10:23:02## file.
10:23:02## Do not set these properties in ``omero config``, instead set the original
10:23:02## ``xxx.yyy`` property
10:23:02#############################################
10:23:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
10:23:0210:23:02## (For documentation only)
10:23:02# Name of the Python module to use when starting the Tables service
10:23:02omero.tables.module=runTables
10:23:0210:23:02#############################################
10:23:02## Server product name for release artifacts
10:23:02#############################################
10:23:02product.name=OMERO.server
10:23:0210:23:02#############################################
10:23:02### Properties below this marker are ignored by
10:23:02### omero.install.config_parser.PropertyParser
10:23:02### END
10:23:0210:23:02#############################################
10:23:02## Library versions
10:23:02#############################################
10:23:02##
10:23:02versions.findbugs=1.2.1
10:23:02versions.ice36=3.6.5
10:23:02versions.ice36_lib=36
10:23:02## internal
10:23:02versions.omeroshares36=3.6.3
10:23:02versions.omeromock36=3.6.3
10:23:02versions.icedb36=3.6.3
10:23:02versions.ipython=1.2.1
10:23:0210:23:02versions.janino=2.5.10
10:23:0210:23:02versions.reportng=1.1.1
10:23:0210:23:02versions.testng=7.5
10:23:02versions.velocity=1.4
10:23:0210:23:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE10:23:02versions.omero-scripts-url=${versions.omero-pypi}
10:23:0210:23:02###
10:23:02### Appended Values
10:23:02###
10:23:0210:23:02## Internal dependencies'
10:23:02+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/10:23:02+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive10:23:02+ echo versions.scripts-prefix=
10:23:02+ echo versions.scripts=merge_ci
10:23:02+ cat /home/omero/workspace/OMERO-push/version.properties
10:23:02+ git commit -a -m 'Add version.properties to etc/omero.properties'
10:23:02[detached HEAD 5d9812eafd] Add version.properties to etc/omero.properties
10:23:02 1 file changed, 46 insertions(+), 7 deletions(-)
10:23:02+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
10:23:04To github.com:snoopycrimecop/openmicroscopy.git
10:23:04 + c3854c4597...5d9812eafd HEAD -> merge_ci (forced update)
10:23:04Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
