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06:28:42 Started by upstream project "Trigger" build number 35
06:28:42 originally caused by:
06:28:42  Started by user devspace
06:28:42 Running as SYSTEM
06:28:42 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
06:28:42 The recommended git tool is: NONE
06:28:42 No credentials specified
06:28:42  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
06:28:42 Fetching changes from the remote Git repository
06:28:42  > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
06:28:42 Fetching upstream changes from https://github.com/ome/openmicroscopy.git
06:28:42  > git --version # timeout=10
06:28:42  > git --version # 'git version 2.39.3'
06:28:42  > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:28:45  > git rev-parse origin/develop^{commit} # timeout=10
06:28:45 Checking out Revision 961096a3710eb8fb6efc46bb69b91f9be98b769f (origin/develop)
06:28:45  > git config core.sparsecheckout # timeout=10
06:28:45  > git checkout -f 961096a3710eb8fb6efc46bb69b91f9be98b769f # timeout=30
06:28:46 Commit message: "Merge pull request #6378 from DavidStirling/ann_names"
06:28:46  > git rev-list --no-walk 961096a3710eb8fb6efc46bb69b91f9be98b769f # timeout=10
06:28:46 Cleaning workspace
06:28:46  > git rev-parse --verify HEAD # timeout=10
06:28:46 Resetting working tree
06:28:46  > git reset --hard # timeout=10
06:28:46  > git clean -fdx # timeout=10
06:28:46 Copied 1 artifact from "OMERO-python-superbuild-build" build number 30
06:28:46 [OMERO-push] $ /bin/bash -xe /tmp/jenkins7045556131463412271.sh
06:28:46 + python3 -mvenv venv
06:28:48 + source /home/omero/workspace/OMERO-push/venv/bin/activate
06:28:48 ++ deactivate nondestructive
06:28:48 ++ '[' -n '' ']'
06:28:48 ++ '[' -n '' ']'
06:28:48 ++ '[' -n /bin/bash -o -n '' ']'
06:28:48 ++ hash -r
06:28:48 ++ '[' -n '' ']'
06:28:48 ++ unset VIRTUAL_ENV
06:28:48 ++ '[' '!' nondestructive = nondestructive ']'
06:28:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
06:28:48 ++ export VIRTUAL_ENV
06:28:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:28:48 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:28:48 ++ export PATH
06:28:48 ++ '[' -n '' ']'
06:28:48 ++ '[' -z '' ']'
06:28:48 ++ _OLD_VIRTUAL_PS1=
06:28:48 ++ PS1='(venv) '
06:28:48 ++ export PS1
06:28:48 ++ '[' -n /bin/bash -o -n '' ']'
06:28:48 ++ hash -r
06:28:48 + pip install -U pip
06:28:50 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.0)
06:28:51 + pip install -U scc
06:28:51 Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1)
06:28:51 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
06:28:51 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
06:28:51 Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
06:28:51 Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
06:28:51 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
06:28:51 Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
06:28:51 Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
06:28:51 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
06:28:51 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
06:28:51 Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
06:28:51 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
06:28:51 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
06:28:51 Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
06:28:51 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
06:28:51 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
06:28:51 Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
06:28:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
06:28:51 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
06:28:51 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
06:28:51 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
06:28:51 Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
06:28:51 + test -e src
06:28:51 + cd src
06:28:51 ++ git config github.user
06:28:51 + user=snoopycrimecop
06:28:51 + scc merge develop --no-ask --reset --shallow -S success-only
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Merging Pull Request(s) based on develop
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
06:28:57 2024-04-12 06:28:57,477 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
06:29:20 2024-04-12 06:29:20,512 [   scc.merge] INFO  Repository: ome/openmicroscopy
06:29:20 2024-04-12 06:29:20,512 [   scc.merge] INFO  Excluded PRs:
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6212 jburel 'add test to import images' (exclude comment)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO  Already up to date.
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO  
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO  Merged PRs:
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6309 jburel 'add try block'
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6353 jburel 'remove dependencies'
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6376 snoopycrimecop 'update dependencies'
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6377 sbesson 'Removal of python-future compatibility'
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO    - PR 6381 jburel 'Session creation'
06:29:20 2024-04-12 06:29:20,513 [   scc.merge] INFO  
06:29:20 + cp etc/omero.properties etc/omero.properties.bak
06:29:20 + rm etc/omero.properties
06:29:20 + touch etc/omero.properties
06:29:20 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
06:29:20 + ne=210
06:29:20 ++ sed -n 1,210p etc/omero.properties.bak
06:29:20 + line='##
06:29:20 ## omero.properties
06:29:20 ## ----------------
06:29:20 ##
06:29:20 ## DO NOT EDIT!
06:29:20 ##
06:29:20 ##
06:29:20 ## Any of these properties can be altered by using `omero config`. MODIFYING
06:29:20 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
06:29:20 ## at compile time!
06:29:20 ##
06:29:20 ## For an overview of these properties, see
06:29:20 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html
06:29:20 ##
06:29:20 ## Properties marked with "DEVELOPMENT" should not be used in production.
06:29:20 
06:29:20 # Comma separated list of Ice transports available to clients. The default
06:29:20 # value ("ssl,tcp") instructs Ice to open the ports specified by the
06:29:20 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
06:29:20 # will prevent all non-encrypted connections to the OMERO server.
06:29:20 #
06:29:20 # Additionally, there are two experimental values for using websockets:
06:29:20 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports
06:29:20 # that are opened are controlled by the omero.ports.ws and omero.ports.wss
06:29:20 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
06:29:20 #
06:29:20 # Note: When using websockets behind a web server like nginx, additional
06:29:20 # configuration may be needed.
06:29:20 omero.client.icetransports=ssl,tcp
06:29:20 
06:29:20 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the
06:29:20 # server
06:29:20 omero.ports.prefix=
06:29:20 
06:29:20 # The Glacier2 SSL port number to use
06:29:20 omero.ports.ssl=4064
06:29:20 
06:29:20 # The Glacier2 TCP port number to use (unencrypted)
06:29:20 omero.ports.tcp=4063
06:29:20 
06:29:20 # The Glacier2 WSS port number to use
06:29:20 omero.ports.wss=4066
06:29:20 
06:29:20 # The Glacier2 WS port number to use (unencrypted)
06:29:20 omero.ports.ws=4065
06:29:20 
06:29:20 # The IceGrid registry port number to use
06:29:20 omero.ports.registry=4061
06:29:20 
06:29:20 #############################################
06:29:20 ## JVM configuration
06:29:20 ##
06:29:20 ## Note: changes to the omero.jvmcfg properties
06:29:20 ## will *not* be reflected in the compiled server
06:29:20 ## since they are defined in a Python file.
06:29:20 #############################################
06:29:20 ## (For documentation only)
06:29:20 # Memory strategy which will be used by default.
06:29:20 # Options include: percent, manual
06:29:20 omero.jvmcfg.strategy=percent
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Explicit value for the `-Xmx` argument, e.g.
06:29:20 # "1g"
06:29:20 omero.jvmcfg.heap_size=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Explicit value for the MaxPermSize argument
06:29:20 # to the JVM, e.g. "500M". Ignored for Java8+
06:29:20 omero.jvmcfg.perm_gen=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Toggles on or off heap dumps on OOMs. Default is "off".
06:29:20 # The special value "tmp" will create the heap dumps in
06:29:20 # your temp directory.
06:29:20 omero.jvmcfg.heap_dump=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Used only by the percent strategy. An integer between 0
06:29:20 # and 100 which is the percent of active memory that will
06:29:20 # be used by the service.
06:29:20 omero.jvmcfg.percent=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Contains other parameters which should be passed to the
06:29:20 # JVM. The value of "append" is treated as if it were on
06:29:20 # the command line so will be separated on whitespace.
06:29:20 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
06:29:20 # results in two new arguments.
06:29:20 # Note that when using `config set` from the command line
06:29:20 # one may need to give a prior `--` option to prevent a value
06:29:20 # starting with `-` from already being parsed as an option,
06:29:20 # and values may need quoting to prevent whitespace or other
06:29:20 # significant characters from being interpreted prematurely.
06:29:20 
06:29:20 omero.jvmcfg.append=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Manual override of the total system memory that
06:29:20 # OMERO will *think* is present on the local OS (MB).
06:29:20 # If unset, an attempt will be made to detect the actual
06:29:20 # amount: first by using the Python library `psutil` and
06:29:20 # if that is not installed, by running a Java tool. If
06:29:20 # neither works, 4.0GB is assumed.
06:29:20 omero.jvmcfg.system_memory=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Suggestion for strategies as to the minimum memory
06:29:20 # that they will use for calculating JVM settings (MB).
06:29:20 omero.jvmcfg.min_system_memory=3414
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Suggestion for strategies as to the maximum memory
06:29:20 # that they will use for calculating JVM settings (MB).
06:29:20 omero.jvmcfg.max_system_memory=48000
06:29:20 
06:29:20 
06:29:20 #############################################
06:29:20 ## Ice overrides
06:29:20 ##
06:29:20 ## Though not used directly by OMERO, a number
06:29:20 ## of properties prefixed with "Ice.*" will
06:29:20 ## alter the behavior of the OMERO runtime
06:29:20 ## by configuring the Ice communicators. For a
06:29:20 ## full listing see:
06:29:20 ##
06:29:20 ##   http://doc.zeroc.com/display/Ice/Property+Reference
06:29:20 ## For more information see
06:29:20 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start
06:29:20 #############################################
06:29:20 
06:29:20 # Disable IPv6 by setting to 0. Only needed in
06:29:20 # certain situations.
06:29:20 Ice.IPv6=1
06:29:20 
06:29:20 # Glacier2Template IceSSL defaults and overrides,
06:29:20 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
06:29:20 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to
06:29:20 # update the corresponding IceSSL. property.
06:29:20 omero.glacier2.IceSSL=
06:29:20 
06:29:20 # Glacier2Template SSL maximum allowed protocol (mac bug)
06:29:20 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
06:29:20 # Glacier2Template SSL allowed cipher suites
06:29:20 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
06:29:20 # Glacier2Template SSL verification requirements
06:29:20 omero.glacier2.IceSSL.VerifyPeer=0
06:29:20 # Glacier2Template SSL allowed protocols
06:29:20 omero.glacier2.IceSSL.Protocols=tls1
06:29:20 
06:29:20 # Override the default set of OMERO services.
06:29:20 # For example, to run OMERO.server with Blitz and Tables only
06:29:20 # (i.e. disable Processor, DropBox, Indexer, PixelData)
06:29:20 # set this to ``master:Blitz-0,Tables-0``.
06:29:20 # Also use this to distribute OMERO services across multiple nodes,
06:29:20 # for example:
06:29:20 # ``master:Blitz-0,Tables-0 worker1:Processor-0``.
06:29:20 # See
06:29:20 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples
06:29:20 omero.server.nodedescriptors=
06:29:20 
06:29:20 #############################################
06:29:20 ## Darwin (OS X) specific defaults for templated configuration files only.
06:29:20 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
06:29:20 ## file.
06:29:20 ## Do not set these properties in ``omero config``, instead set the original
06:29:20 ## ``xxx.yyy`` property
06:29:20 #############################################
06:29:20 _omero.glacier2.IceSSL.Ciphers.darwin=(AES)
06:29:20 
06:29:20 
06:29:20 
06:29:20 #############################################
06:29:20 ## Server product name for release artifacts
06:29:20 #############################################
06:29:20 product.name=OMERO.server
06:29:20 
06:29:20 #############################################
06:29:20 ### Properties below this marker are ignored by
06:29:20 ### omero.install.config_parser.PropertyParser
06:29:20 ### END
06:29:20 
06:29:20 #############################################
06:29:20 ## Library versions
06:29:20 #############################################
06:29:20 ##
06:29:20 versions.findbugs=1.2.1
06:29:20 versions.ice36=3.6.5
06:29:20 versions.ice36_lib=36
06:29:20 ## internal
06:29:20 versions.omeroshares36=3.6.3
06:29:20 versions.omeromock36=3.6.3
06:29:20 versions.icedb36=3.6.3
06:29:20 versions.ipython=1.2.1
06:29:20 
06:29:20 versions.janino=2.5.10
06:29:20 
06:29:20 versions.reportng=1.1.1
06:29:20 
06:29:20 versions.testng=7.5
06:29:20 versions.velocity=1.4
06:29:20 
06:29:20 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE
06:29:20 versions.omero-scripts-url=${versions.omero-pypi}
06:29:20 
06:29:20 ###
06:29:20 ### Appended Values
06:29:20 ###
06:29:20 
06:29:20 ## Internal dependencies'
06:29:20 + echo '##
06:29:20 ## omero.properties
06:29:20 ## ----------------
06:29:20 ##
06:29:20 ## DO NOT EDIT!
06:29:20 ##
06:29:20 ##
06:29:20 ## Any of these properties can be altered by using `omero config`. MODIFYING
06:29:20 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
06:29:20 ## at compile time!
06:29:20 ##
06:29:20 ## For an overview of these properties, see
06:29:20 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html
06:29:20 ##
06:29:20 ## Properties marked with "DEVELOPMENT" should not be used in production.
06:29:20 
06:29:20 # Comma separated list of Ice transports available to clients. The default
06:29:20 # value ("ssl,tcp") instructs Ice to open the ports specified by the
06:29:20 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
06:29:20 # will prevent all non-encrypted connections to the OMERO server.
06:29:20 #
06:29:20 # Additionally, there are two experimental values for using websockets:
06:29:20 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports
06:29:20 # that are opened are controlled by the omero.ports.ws and omero.ports.wss
06:29:20 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
06:29:20 #
06:29:20 # Note: When using websockets behind a web server like nginx, additional
06:29:20 # configuration may be needed.
06:29:20 omero.client.icetransports=ssl,tcp
06:29:20 
06:29:20 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the
06:29:20 # server
06:29:20 omero.ports.prefix=
06:29:20 
06:29:20 # The Glacier2 SSL port number to use
06:29:20 omero.ports.ssl=4064
06:29:20 
06:29:20 # The Glacier2 TCP port number to use (unencrypted)
06:29:20 omero.ports.tcp=4063
06:29:20 
06:29:20 # The Glacier2 WSS port number to use
06:29:20 omero.ports.wss=4066
06:29:20 
06:29:20 # The Glacier2 WS port number to use (unencrypted)
06:29:20 omero.ports.ws=4065
06:29:20 
06:29:20 # The IceGrid registry port number to use
06:29:20 omero.ports.registry=4061
06:29:20 
06:29:20 #############################################
06:29:20 ## JVM configuration
06:29:20 ##
06:29:20 ## Note: changes to the omero.jvmcfg properties
06:29:20 ## will *not* be reflected in the compiled server
06:29:20 ## since they are defined in a Python file.
06:29:20 #############################################
06:29:20 ## (For documentation only)
06:29:20 # Memory strategy which will be used by default.
06:29:20 # Options include: percent, manual
06:29:20 omero.jvmcfg.strategy=percent
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Explicit value for the `-Xmx` argument, e.g.
06:29:20 # "1g"
06:29:20 omero.jvmcfg.heap_size=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Explicit value for the MaxPermSize argument
06:29:20 # to the JVM, e.g. "500M". Ignored for Java8+
06:29:20 omero.jvmcfg.perm_gen=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Toggles on or off heap dumps on OOMs. Default is "off".
06:29:20 # The special value "tmp" will create the heap dumps in
06:29:20 # your temp directory.
06:29:20 omero.jvmcfg.heap_dump=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Used only by the percent strategy. An integer between 0
06:29:20 # and 100 which is the percent of active memory that will
06:29:20 # be used by the service.
06:29:20 omero.jvmcfg.percent=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Contains other parameters which should be passed to the
06:29:20 # JVM. The value of "append" is treated as if it were on
06:29:20 # the command line so will be separated on whitespace.
06:29:20 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
06:29:20 # results in two new arguments.
06:29:20 # Note that when using `config set` from the command line
06:29:20 # one may need to give a prior `--` option to prevent a value
06:29:20 # starting with `-` from already being parsed as an option,
06:29:20 # and values may need quoting to prevent whitespace or other
06:29:20 # significant characters from being interpreted prematurely.
06:29:20 
06:29:20 omero.jvmcfg.append=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Manual override of the total system memory that
06:29:20 # OMERO will *think* is present on the local OS (MB).
06:29:20 # If unset, an attempt will be made to detect the actual
06:29:20 # amount: first by using the Python library `psutil` and
06:29:20 # if that is not installed, by running a Java tool. If
06:29:20 # neither works, 4.0GB is assumed.
06:29:20 omero.jvmcfg.system_memory=
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Suggestion for strategies as to the minimum memory
06:29:20 # that they will use for calculating JVM settings (MB).
06:29:20 omero.jvmcfg.min_system_memory=3414
06:29:20 
06:29:20 ## (For documentation only)
06:29:20 # Suggestion for strategies as to the maximum memory
06:29:20 # that they will use for calculating JVM settings (MB).
06:29:20 omero.jvmcfg.max_system_memory=48000
06:29:20 
06:29:20 
06:29:20 #############################################
06:29:20 ## Ice overrides
06:29:20 ##
06:29:20 ## Though not used directly by OMERO, a number
06:29:20 ## of properties prefixed with "Ice.*" will
06:29:20 ## alter the behavior of the OMERO runtime
06:29:20 ## by configuring the Ice communicators. For a
06:29:20 ## full listing see:
06:29:20 ##
06:29:20 ##   http://doc.zeroc.com/display/Ice/Property+Reference
06:29:20 ## For more information see
06:29:20 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start
06:29:20 #############################################
06:29:20 
06:29:20 # Disable IPv6 by setting to 0. Only needed in
06:29:20 # certain situations.
06:29:20 Ice.IPv6=1
06:29:20 
06:29:20 # Glacier2Template IceSSL defaults and overrides,
06:29:20 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
06:29:20 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to
06:29:20 # update the corresponding IceSSL. property.
06:29:20 omero.glacier2.IceSSL=
06:29:20 
06:29:20 # Glacier2Template SSL maximum allowed protocol (mac bug)
06:29:20 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
06:29:20 # Glacier2Template SSL allowed cipher suites
06:29:20 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
06:29:20 # Glacier2Template SSL verification requirements
06:29:20 omero.glacier2.IceSSL.VerifyPeer=0
06:29:20 # Glacier2Template SSL allowed protocols
06:29:20 omero.glacier2.IceSSL.Protocols=tls1
06:29:20 
06:29:20 # Override the default set of OMERO services.
06:29:20 # For example, to run OMERO.server with Blitz and Tables only
06:29:20 # (i.e. disable Processor, DropBox, Indexer, PixelData)
06:29:20 # set this to ``master:Blitz-0,Tables-0``.
06:29:20 # Also use this to distribute OMERO services across multiple nodes,
06:29:20 # for example:
06:29:20 # ``master:Blitz-0,Tables-0 worker1:Processor-0``.
06:29:20 # See
06:29:20 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples
06:29:20 omero.server.nodedescriptors=
06:29:20 
06:29:20 #############################################
06:29:20 ## Darwin (OS X) specific defaults for templated configuration files only.
06:29:20 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
06:29:20 ## file.
06:29:20 ## Do not set these properties in ``omero config``, instead set the original
06:29:20 ## ``xxx.yyy`` property
06:29:20 #############################################
06:29:20 _omero.glacier2.IceSSL.Ciphers.darwin=(AES)
06:29:20 
06:29:20 
06:29:20 
06:29:20 #############################################
06:29:20 ## Server product name for release artifacts
06:29:20 #############################################
06:29:20 product.name=OMERO.server
06:29:20 
06:29:20 #############################################
06:29:20 ### Properties below this marker are ignored by
06:29:20 ### omero.install.config_parser.PropertyParser
06:29:20 ### END
06:29:20 
06:29:20 #############################################
06:29:20 ## Library versions
06:29:20 #############################################
06:29:20 ##
06:29:20 versions.findbugs=1.2.1
06:29:20 versions.ice36=3.6.5
06:29:20 versions.ice36_lib=36
06:29:20 ## internal
06:29:20 versions.omeroshares36=3.6.3
06:29:20 versions.omeromock36=3.6.3
06:29:20 versions.icedb36=3.6.3
06:29:20 versions.ipython=1.2.1
06:29:20 
06:29:20 versions.janino=2.5.10
06:29:20 
06:29:20 versions.reportng=1.1.1
06:29:20 
06:29:20 versions.testng=7.5
06:29:20 versions.velocity=1.4
06:29:20 
06:29:20 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE
06:29:20 versions.omero-scripts-url=${versions.omero-pypi}
06:29:20 
06:29:20 ###
06:29:20 ### Appended Values
06:29:20 ###
06:29:20 
06:29:20 ## Internal dependencies'
06:29:20 + echo versions.omero-pypi=https://BRANCHCI.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/
06:29:20 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive
06:29:20 + echo versions.scripts-prefix=
06:29:20 + echo versions.scripts=merge_ci
06:29:20 + cat /home/omero/workspace/OMERO-push/version.properties
06:29:20 + git commit -a -m 'Add version.properties to etc/omero.properties'
06:29:20 [detached HEAD 73ca23df5e] Add version.properties to etc/omero.properties
06:29:20  1 file changed, 47 insertions(+), 7 deletions(-)
06:29:20 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
06:29:22 To github.com:snoopycrimecop/openmicroscopy.git
06:29:22  + 66bbda8c65...73ca23df5e HEAD -> merge_ci (forced update)
06:29:22 Finished: SUCCESS