11:14:09Started by user devspace11:14:09Running as SYSTEM
11:14:09Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
11:14:09The recommended git tool is: NONE
11:14:09No credentials specified
11:14:09 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
11:14:09Fetching changes from the remote Git repository
11:14:09 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
11:14:10Fetching upstream changes from https://github.com/ome/openmicroscopy.git11:14:10 > git --version # timeout=10
11:14:10 > git --version # 'git version 2.52.0'
11:14:10 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:14:15 > git rev-parse origin/develop^{commit} # timeout=10
11:14:15Checking out Revision 1dc039c0b73e41efb6ce0f158c970995b2dbb524 (origin/develop)
11:14:15 > git config core.sparsecheckout # timeout=10
11:14:15 > git checkout -f 1dc039c0b73e41efb6ce0f158c970995b2dbb524 # timeout=30
11:14:18Commit message: "Merge pull request #6471 from pwalczysko/pyramids-proper"
11:14:18 > git rev-list --no-walk 81c671cab8055f5d06ef64556fd473ada8de4922 # timeout=10
11:14:18Cleaning workspace
11:14:18 > git rev-parse --verify HEAD # timeout=10
11:14:18Resetting working tree
11:14:18 > git reset --hard # timeout=10
11:14:18 > git clean -fdx # timeout=10
11:14:18Copied 1 artifact from "OMERO-python-superbuild-build" build number 2811:14:19[OMERO-push] $ /bin/bash -xe /tmp/jenkins6272550888475564267.sh
11:14:19+ python3.11 -mvenv venv
11:14:21+ source /home/omero/workspace/OMERO-push/venv/bin/activate
11:14:21++ deactivate nondestructive
11:14:21++ '[' -n '' ']'
11:14:21++ '[' -n '' ']'
11:14:21++ hash -r
11:14:21++ '[' -n '' ']'
11:14:21++ unset VIRTUAL_ENV
11:14:21++ unset VIRTUAL_ENV_PROMPT
11:14:21++ '[' '!' nondestructive = nondestructive ']'
11:14:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
11:14:21++ export VIRTUAL_ENV
11:14:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:14:21++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:14:21++ export PATH
11:14:21++ '[' -n '' ']'
11:14:21++ '[' -z '' ']'
11:14:21++ _OLD_VIRTUAL_PS1=
11:14:21++ PS1='(venv) '
11:14:21++ export PS1
11:14:21++ VIRTUAL_ENV_PROMPT='(venv) '
11:14:21++ export VIRTUAL_ENV_PROMPT
11:14:21++ hash -r
11:14:21+ pip install -U pip
11:14:25Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2)
11:14:25+ pip install -U scc
11:14:26Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
11:14:27Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
11:14:27Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
11:14:27Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
11:14:27Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
11:14:27Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
11:14:27Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
11:14:27Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
11:14:27Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
11:14:27Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
11:14:27Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
11:14:27Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
11:14:27Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
11:14:27Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
11:14:27Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
11:14:27Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
11:14:27Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
11:14:27Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
11:14:27Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
11:14:27+ test -e src
11:14:27+ cd src
11:14:27++ git config github.user
11:14:27+ user=snoopycrimecop
11:14:27+ scc merge develop --no-ask --reset --shallow -S success-only
11:14:332026-08-03 11:14:33,956 [ scc.merge] INFO Merging Pull Request(s) based on develop
11:14:332026-08-03 11:14:33,957 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
11:14:332026-08-03 11:14:33,957 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
11:14:332026-08-03 11:14:33,957 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
11:14:332026-08-03 11:14:33,957 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
11:14:332026-08-03 11:14:33,957 [ scc.merge] INFO Excluding Pull Request(s) without successful status
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO Repository: ome/openmicroscopy
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO Excluded PRs:
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6472 pwalczysko 'Try to fix thumb test [one,set]' (label: exclude)
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure)
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO Already up to date.
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO Merged PRs:
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO - PR 6473 sbesson 'Java skip thumbnails permission tests: use fake pyramidal images'
11:14:562026-08-03 11:14:56,950 [ scc.merge] INFO
11:14:57+ cp etc/omero.properties etc/omero.properties.bak
11:14:57+ rm etc/omero.properties
11:14:57+ touch etc/omero.properties
11:14:57++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
11:14:57+ ne=249
11:14:57++ sed -n 1,249p etc/omero.properties.bak
11:14:57+ line='##
11:14:57## omero.properties
11:14:57## ----------------
11:14:57##
11:14:57## DO NOT EDIT!
11:14:57##
11:14:57##
11:14:57## Any of these properties can be altered by using `omero config`. MODIFYING
11:14:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:14:57## at compile time!
11:14:57##
11:14:57## For an overview of these properties, see
11:14:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:14:57##
11:14:57## Properties marked with "DEVELOPMENT" should not be used in production.
11:14:5711:14:57# Comma separated list of Ice transports available to clients. The default
11:14:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:14:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:14:57# will prevent all non-encrypted connections to the OMERO server.
11:14:57#
11:14:57# Additionally, there are two experimental values for using websockets:
11:14:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:14:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:14:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:14:57#
11:14:57# Note: When using websockets behind a web server like nginx, additional
11:14:57# configuration may be needed.
11:14:57omero.client.icetransports=ssl,tcp
11:14:5711:14:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:14:57# server
11:14:57omero.ports.prefix=
11:14:5711:14:57# The Glacier2 SSL port number to use
11:14:57omero.ports.ssl=4064
11:14:5711:14:57# The Glacier2 TCP port number to use (unencrypted)
11:14:57omero.ports.tcp=4063
11:14:5711:14:57# The Glacier2 WSS port number to use
11:14:57omero.ports.wss=4066
11:14:5711:14:57# The Glacier2 WS port number to use (unencrypted)
11:14:57omero.ports.ws=4065
11:14:5711:14:57# The IceGrid registry port number to use
11:14:57omero.ports.registry=4061
11:14:5711:14:57#############################################
11:14:57## JVM configuration
11:14:57##
11:14:57## Note: changes to the omero.jvmcfg properties
11:14:57## will *not* be reflected in OMERO.server
11:14:57## since they are defined in OMERO.py.
11:14:57#############################################
11:14:57## (For documentation only)
11:14:57# Memory strategy which will be used by default.
11:14:57# Options include: percent, manual
11:14:57omero.jvmcfg.strategy=percent
11:14:5711:14:57## (For documentation only)
11:14:57# Explicit value for the `-Xmx` argument, e.g.
11:14:57# "1g"
11:14:57omero.jvmcfg.heap_size=
11:14:5711:14:57## (For documentation only)
11:14:57# Explicit value for the MaxPermSize argument
11:14:57# to the JVM, e.g. "500M". Ignored for Java8+
11:14:57omero.jvmcfg.perm_gen=
11:14:5711:14:57## (For documentation only)
11:14:57# Toggles on or off heap dumps on OOMs. Default is "off".
11:14:57# The special value "tmp" will create the heap dumps in
11:14:57# your temp directory.
11:14:57omero.jvmcfg.heap_dump=
11:14:5711:14:57## (For documentation only)
11:14:57# Used only by the percent strategy. An integer between 0
11:14:57# and 100 which is the percent of active memory that will
11:14:57# be used by the service.
11:14:57omero.jvmcfg.percent=
11:14:5711:14:57## (For documentation only)
11:14:57# Contains other parameters which should be passed to the
11:14:57# JVM. The value of "append" is treated as if it were on
11:14:57# the command line so will be separated on whitespace.
11:14:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:14:57# results in two new arguments.
11:14:57# Note that when using `config set` from the command line
11:14:57# one may need to give a prior `--` option to prevent a value
11:14:57# starting with `-` from already being parsed as an option,
11:14:57# and values may need quoting to prevent whitespace or other
11:14:57# significant characters from being interpreted prematurely.
11:14:5711:14:57omero.jvmcfg.append=
11:14:5711:14:57## (For documentation only)
11:14:57# Manual override of the total system memory that
11:14:57# OMERO will *think* is present on the local OS (MB).
11:14:57# If unset, an attempt will be made to detect the actual
11:14:57# amount: first by using the Python library `psutil` and
11:14:57# if that is not installed, by running a Java tool. If
11:14:57# neither works, 4.0GB is assumed.
11:14:57omero.jvmcfg.system_memory=
11:14:5711:14:57## (For documentation only)
11:14:57# Suggestion for strategies as to the minimum memory
11:14:57# that they will use for calculating JVM settings (MB).
11:14:57omero.jvmcfg.min_system_memory=3414
11:14:5711:14:57## (For documentation only)
11:14:57# Suggestion for strategies as to the maximum memory
11:14:57# that they will use for calculating JVM settings (MB).
11:14:57omero.jvmcfg.max_system_memory=48000
11:14:5711:14:5711:14:57#############################################
11:14:57## Logging properties
11:14:57##
11:14:57## Note: changes to the default omero.logging values in
11:14:57## this file will *not* be reflected in OMERO.server
11:14:57## since they are defined in OMERO.py
11:14:57#############################################
11:14:5711:14:57## (For documentation only)
11:14:57# Relative server directory where the log files should be stored.
11:14:57omero.logging.directory=var/log/
11:14:5711:14:57## (For documentation only)
11:14:57# Whether the server log files should be rotated at a certain time
11:14:57# interval. If true, log files will be rolled over at midnight.
11:14:57# Otherwise, log files will be rolled over at a predetermined size,
11:14:57# see omero.logging.logsize for more information.
11:14:57omero.logging.timedlog=false
11:14:5711:14:57## (For documentation only)
11:14:57# If omero.logging.timedlog is false or unset, specifies the
11:14:57# maximum size of the server log files in bytes above which a
11:14:57# new log file should be created.
11:14:57omero.logging.logsize=5000000
11:14:5711:14:57## (For documentation only)
11:14:57# If omero.logging.timedlog is false or unset, specifies the
11:14:57# number of old server log files that should be kept. Old log
11:14:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:14:57omero.logging.lognum=9
11:14:5711:14:57## (For documentation only)
11:14:57# Specifies the threshold for the Python servers log files. Logging messages
11:14:57# which are less severe than this value will be ignored. For a list of
11:14:57# available values, see https://docs.python.org/3/library/logging.html#levels.
11:14:57omero.logging.level=20
11:14:5711:14:57#############################################
11:14:57## Ice overrides
11:14:57##
11:14:57## Though not used directly by OMERO, a number
11:14:57## of properties prefixed with "Ice.*" will
11:14:57## alter the behavior of the OMERO runtime
11:14:57## by configuring the Ice communicators. For a
11:14:57## full listing see:
11:14:57##
11:14:57## http://doc.zeroc.com/display/Ice/Property+Reference11:14:57## For more information see
11:14:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:14:57#############################################
11:14:5711:14:57# Disable IPv6 by setting to 0. Only needed in
11:14:57# certain situations.
11:14:57Ice.IPv6=1
11:14:5711:14:57# Glacier2Template IceSSL defaults and overrides,
11:14:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:14:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:14:57# update the corresponding IceSSL. property.
11:14:57omero.glacier2.IceSSL=
11:14:5711:14:57# Glacier2Template SSL maximum allowed protocol (mac bug)
11:14:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:14:57# Glacier2Template SSL allowed cipher suites
11:14:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:14:57# Glacier2Template SSL verification requirements
11:14:57omero.glacier2.IceSSL.VerifyPeer=0
11:14:57# Glacier2Template SSL allowed protocols
11:14:57omero.glacier2.IceSSL.Protocols=tls1
11:14:5711:14:57# Override the default set of OMERO services.
11:14:57# For example, to run OMERO.server with Blitz and Tables only
11:14:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:14:57# set this to ``master:Blitz-0,Tables-0``.
11:14:57# Also use this to distribute OMERO services across multiple nodes,
11:14:57# for example:
11:14:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:14:57# See
11:14:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:14:57omero.server.nodedescriptors=
11:14:5711:14:57#############################################
11:14:57## Darwin (OS X) specific defaults for templated configuration files only.
11:14:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:14:57## file.
11:14:57## Do not set these properties in ``omero config``, instead set the original
11:14:57## ``xxx.yyy`` property
11:14:57#############################################
11:14:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:14:5711:14:57## (For documentation only)
11:14:57# Name of the Python module to use when starting the Tables service
11:14:57omero.tables.module=runTables
11:14:5711:14:57#############################################
11:14:57## Server product name for release artifacts
11:14:57#############################################
11:14:57product.name=OMERO.server
11:14:5711:14:57#############################################
11:14:57### Properties below this marker are ignored by
11:14:57### omero.install.config_parser.PropertyParser
11:14:57### END
11:14:5711:14:57#############################################
11:14:57## Library versions
11:14:57#############################################
11:14:57##
11:14:57versions.findbugs=1.2.1
11:14:57versions.ice36=3.6.5
11:14:57versions.ice36_lib=36
11:14:57## internal
11:14:57versions.omeroshares36=3.6.3
11:14:57versions.omeromock36=3.6.3
11:14:57versions.icedb36=3.6.3
11:14:57versions.ipython=1.2.1
11:14:5711:14:57versions.janino=2.5.10
11:14:5711:14:57versions.reportng=1.1.1
11:14:5711:14:57versions.testng=7.5
11:14:57versions.velocity=1.4
11:14:5711:14:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:14:57versions.omero-scripts-url=${versions.omero-pypi}
11:14:5711:14:57###
11:14:57### Appended Values
11:14:57###
11:14:5711:14:57## Internal dependencies'
11:14:57+ echo '##
11:14:57## omero.properties
11:14:57## ----------------
11:14:57##
11:14:57## DO NOT EDIT!
11:14:57##
11:14:57##
11:14:57## Any of these properties can be altered by using `omero config`. MODIFYING
11:14:57## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:14:57## at compile time!
11:14:57##
11:14:57## For an overview of these properties, see
11:14:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:14:57##
11:14:57## Properties marked with "DEVELOPMENT" should not be used in production.
11:14:5711:14:57# Comma separated list of Ice transports available to clients. The default
11:14:57# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:14:57# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:14:57# will prevent all non-encrypted connections to the OMERO server.
11:14:57#
11:14:57# Additionally, there are two experimental values for using websockets:
11:14:57# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:14:57# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:14:57# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:14:57#
11:14:57# Note: When using websockets behind a web server like nginx, additional
11:14:57# configuration may be needed.
11:14:57omero.client.icetransports=ssl,tcp
11:14:5711:14:57# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:14:57# server
11:14:57omero.ports.prefix=
11:14:5711:14:57# The Glacier2 SSL port number to use
11:14:57omero.ports.ssl=4064
11:14:5711:14:57# The Glacier2 TCP port number to use (unencrypted)
11:14:57omero.ports.tcp=4063
11:14:5711:14:57# The Glacier2 WSS port number to use
11:14:57omero.ports.wss=4066
11:14:5711:14:57# The Glacier2 WS port number to use (unencrypted)
11:14:57omero.ports.ws=4065
11:14:5711:14:57# The IceGrid registry port number to use
11:14:57omero.ports.registry=4061
11:14:5711:14:57#############################################
11:14:57## JVM configuration
11:14:57##
11:14:57## Note: changes to the omero.jvmcfg properties
11:14:57## will *not* be reflected in OMERO.server
11:14:57## since they are defined in OMERO.py.
11:14:57#############################################
11:14:57## (For documentation only)
11:14:57# Memory strategy which will be used by default.
11:14:57# Options include: percent, manual
11:14:57omero.jvmcfg.strategy=percent
11:14:5711:14:57## (For documentation only)
11:14:57# Explicit value for the `-Xmx` argument, e.g.
11:14:57# "1g"
11:14:57omero.jvmcfg.heap_size=
11:14:5711:14:57## (For documentation only)
11:14:57# Explicit value for the MaxPermSize argument
11:14:57# to the JVM, e.g. "500M". Ignored for Java8+
11:14:57omero.jvmcfg.perm_gen=
11:14:5711:14:57## (For documentation only)
11:14:57# Toggles on or off heap dumps on OOMs. Default is "off".
11:14:57# The special value "tmp" will create the heap dumps in
11:14:57# your temp directory.
11:14:57omero.jvmcfg.heap_dump=
11:14:5711:14:57## (For documentation only)
11:14:57# Used only by the percent strategy. An integer between 0
11:14:57# and 100 which is the percent of active memory that will
11:14:57# be used by the service.
11:14:57omero.jvmcfg.percent=
11:14:5711:14:57## (For documentation only)
11:14:57# Contains other parameters which should be passed to the
11:14:57# JVM. The value of "append" is treated as if it were on
11:14:57# the command line so will be separated on whitespace.
11:14:57# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:14:57# results in two new arguments.
11:14:57# Note that when using `config set` from the command line
11:14:57# one may need to give a prior `--` option to prevent a value
11:14:57# starting with `-` from already being parsed as an option,
11:14:57# and values may need quoting to prevent whitespace or other
11:14:57# significant characters from being interpreted prematurely.
11:14:5711:14:57omero.jvmcfg.append=
11:14:5711:14:57## (For documentation only)
11:14:57# Manual override of the total system memory that
11:14:57# OMERO will *think* is present on the local OS (MB).
11:14:57# If unset, an attempt will be made to detect the actual
11:14:57# amount: first by using the Python library `psutil` and
11:14:57# if that is not installed, by running a Java tool. If
11:14:57# neither works, 4.0GB is assumed.
11:14:57omero.jvmcfg.system_memory=
11:14:5711:14:57## (For documentation only)
11:14:57# Suggestion for strategies as to the minimum memory
11:14:57# that they will use for calculating JVM settings (MB).
11:14:57omero.jvmcfg.min_system_memory=3414
11:14:5711:14:57## (For documentation only)
11:14:57# Suggestion for strategies as to the maximum memory
11:14:57# that they will use for calculating JVM settings (MB).
11:14:57omero.jvmcfg.max_system_memory=48000
11:14:5711:14:5711:14:57#############################################
11:14:57## Logging properties
11:14:57##
11:14:57## Note: changes to the default omero.logging values in
11:14:57## this file will *not* be reflected in OMERO.server
11:14:57## since they are defined in OMERO.py
11:14:57#############################################
11:14:5711:14:57## (For documentation only)
11:14:57# Relative server directory where the log files should be stored.
11:14:57omero.logging.directory=var/log/
11:14:5711:14:57## (For documentation only)
11:14:57# Whether the server log files should be rotated at a certain time
11:14:57# interval. If true, log files will be rolled over at midnight.
11:14:57# Otherwise, log files will be rolled over at a predetermined size,
11:14:57# see omero.logging.logsize for more information.
11:14:57omero.logging.timedlog=false
11:14:5711:14:57## (For documentation only)
11:14:57# If omero.logging.timedlog is false or unset, specifies the
11:14:57# maximum size of the server log files in bytes above which a
11:14:57# new log file should be created.
11:14:57omero.logging.logsize=5000000
11:14:5711:14:57## (For documentation only)
11:14:57# If omero.logging.timedlog is false or unset, specifies the
11:14:57# number of old server log files that should be kept. Old log
11:14:57# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:14:57omero.logging.lognum=9
11:14:5711:14:57## (For documentation only)
11:14:57# Specifies the threshold for the Python servers log files. Logging messages
11:14:57# which are less severe than this value will be ignored. For a list of
11:14:57# available values, see https://docs.python.org/3/library/logging.html#levels.
11:14:57omero.logging.level=20
11:14:5711:14:57#############################################
11:14:57## Ice overrides
11:14:57##
11:14:57## Though not used directly by OMERO, a number
11:14:57## of properties prefixed with "Ice.*" will
11:14:57## alter the behavior of the OMERO runtime
11:14:57## by configuring the Ice communicators. For a
11:14:57## full listing see:
11:14:57##
11:14:57## http://doc.zeroc.com/display/Ice/Property+Reference11:14:57## For more information see
11:14:57## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:14:57#############################################
11:14:5711:14:57# Disable IPv6 by setting to 0. Only needed in
11:14:57# certain situations.
11:14:57Ice.IPv6=1
11:14:5711:14:57# Glacier2Template IceSSL defaults and overrides,
11:14:57# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:14:57# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:14:57# update the corresponding IceSSL. property.
11:14:57omero.glacier2.IceSSL=
11:14:5711:14:57# Glacier2Template SSL maximum allowed protocol (mac bug)
11:14:57omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:14:57# Glacier2Template SSL allowed cipher suites
11:14:57omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:14:57# Glacier2Template SSL verification requirements
11:14:57omero.glacier2.IceSSL.VerifyPeer=0
11:14:57# Glacier2Template SSL allowed protocols
11:14:57omero.glacier2.IceSSL.Protocols=tls1
11:14:5711:14:57# Override the default set of OMERO services.
11:14:57# For example, to run OMERO.server with Blitz and Tables only
11:14:57# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:14:57# set this to ``master:Blitz-0,Tables-0``.
11:14:57# Also use this to distribute OMERO services across multiple nodes,
11:14:57# for example:
11:14:57# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:14:57# See
11:14:57# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:14:57omero.server.nodedescriptors=
11:14:5711:14:57#############################################
11:14:57## Darwin (OS X) specific defaults for templated configuration files only.
11:14:57## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:14:57## file.
11:14:57## Do not set these properties in ``omero config``, instead set the original
11:14:57## ``xxx.yyy`` property
11:14:57#############################################
11:14:57_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:14:5711:14:57## (For documentation only)
11:14:57# Name of the Python module to use when starting the Tables service
11:14:57omero.tables.module=runTables
11:14:5711:14:57#############################################
11:14:57## Server product name for release artifacts
11:14:57#############################################
11:14:57product.name=OMERO.server
11:14:5711:14:57#############################################
11:14:57### Properties below this marker are ignored by
11:14:57### omero.install.config_parser.PropertyParser
11:14:57### END
11:14:5711:14:57#############################################
11:14:57## Library versions
11:14:57#############################################
11:14:57##
11:14:57versions.findbugs=1.2.1
11:14:57versions.ice36=3.6.5
11:14:57versions.ice36_lib=36
11:14:57## internal
11:14:57versions.omeroshares36=3.6.3
11:14:57versions.omeromock36=3.6.3
11:14:57versions.icedb36=3.6.3
11:14:57versions.ipython=1.2.1
11:14:5711:14:57versions.janino=2.5.10
11:14:5711:14:57versions.reportng=1.1.1
11:14:5711:14:57versions.testng=7.5
11:14:57versions.velocity=1.4
11:14:5711:14:57versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:14:57versions.omero-scripts-url=${versions.omero-pypi}
11:14:5711:14:57###
11:14:57### Appended Values
11:14:57###
11:14:5711:14:57## Internal dependencies'
11:14:57+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/11:14:57+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive11:14:57+ echo versions.scripts-prefix=
11:14:57+ echo versions.scripts=merge_ci
11:14:57+ cat /home/omero/workspace/OMERO-push/version.properties
11:14:57+ git commit -a -m 'Add version.properties to etc/omero.properties'
11:14:57[detached HEAD 0d859ccd1b] Add version.properties to etc/omero.properties
11:14:57 1 file changed, 46 insertions(+), 6 deletions(-)
11:14:57+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
11:15:00To github.com:snoopycrimecop/openmicroscopy.git
11:15:00 + b4465394cd...0d859ccd1b HEAD -> merge_ci (forced update)
11:15:00Finished: SUCCESS
