02:42:14Started by upstream project "Trigger" build number 52502:42:14originally caused by:
02:42:14 Started by user devspace02:42:14Running as SYSTEM
02:42:14Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
02:42:14The recommended git tool is: NONE
02:42:14No credentials specified
02:42:14 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
02:42:14Fetching changes from the remote Git repository
02:42:14 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
02:42:14Fetching upstream changes from https://github.com/ome/openmicroscopy.git02:42:14 > git --version # timeout=10
02:42:14 > git --version # 'git version 2.43.5'
02:42:14 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
02:42:22 > git rev-parse origin/develop^{commit} # timeout=10
02:42:22Checking out Revision 8921799e914984c69c33fb7262c474cb7dfff407 (origin/develop)
02:42:22 > git config core.sparsecheckout # timeout=10
02:42:22 > git checkout -f 8921799e914984c69c33fb7262c474cb7dfff407 # timeout=30
02:42:23Commit message: "Merge pull request #6431 from ome/create-pull-request/patch"
02:42:23 > git rev-list --no-walk b2fa7db992516bdb66e199decb9e22af44bf2c27 # timeout=10
02:42:24Cleaning workspace
02:42:24 > git rev-parse --verify HEAD # timeout=10
02:42:24Resetting working tree
02:42:24 > git reset --hard # timeout=10
02:42:24 > git clean -fdx # timeout=10
02:42:24Copied 1 artifact from "OMERO-python-superbuild-build" build number 43702:42:24[OMERO-push] $ /bin/bash -xe /tmp/jenkins8352106934146583416.sh
02:42:24+ python3.11 -mvenv venv
02:42:27+ source /home/omero/workspace/OMERO-push/venv/bin/activate
02:42:27++ deactivate nondestructive
02:42:27++ '[' -n '' ']'
02:42:27++ '[' -n '' ']'
02:42:27++ hash -r
02:42:27++ '[' -n '' ']'
02:42:27++ unset VIRTUAL_ENV
02:42:27++ unset VIRTUAL_ENV_PROMPT
02:42:27++ '[' '!' nondestructive = nondestructive ']'
02:42:27++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
02:42:27++ export VIRTUAL_ENV
02:42:27++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:42:27++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:42:27++ export PATH
02:42:27++ '[' -n '' ']'
02:42:27++ '[' -z '' ']'
02:42:27++ _OLD_VIRTUAL_PS1=
02:42:27++ PS1='(venv) '
02:42:27++ export PS1
02:42:27++ VIRTUAL_ENV_PROMPT='(venv) '
02:42:27++ export VIRTUAL_ENV_PROMPT
02:42:27++ hash -r
02:42:27+ pip install -U pip
02:42:36Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.1.1)
02:42:36+ pip install -U scc
02:42:36Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
02:42:36Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1)
02:42:36Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2)
02:42:36Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
02:42:36Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10)
02:42:36Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
02:42:36Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
02:42:36Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
02:42:36Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
02:42:36Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0)
02:42:36Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3)
02:42:36Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
02:42:36Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0)
02:42:36Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18)
02:42:36Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2)
02:42:36Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1)
02:42:36Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22)
02:42:36Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1)
02:42:36Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10)
02:42:36Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31)
02:42:36Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2)
02:42:36Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12)
02:42:36+ test -e src
02:42:36+ cd src
02:42:36++ git config github.user
02:42:36+ user=snoopycrimecop
02:42:36+ scc merge develop --no-ask --reset --shallow -S success-only
02:42:452025-06-18 02:42:45,947 [ scc.merge] INFO Merging Pull Request(s) based on develop
02:42:452025-06-18 02:42:45,947 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
02:42:452025-06-18 02:42:45,948 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
02:42:452025-06-18 02:42:45,948 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
02:42:452025-06-18 02:42:45,948 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
02:42:452025-06-18 02:42:45,948 [ scc.merge] INFO Excluding Pull Request(s) without successful status
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO Repository: ome/openmicroscopy
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO Excluded PRs:
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO Already up to date.
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO Merged PRs:
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6309 jburel 'add try block'
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system'
02:43:022025-06-18 02:43:02,675 [ scc.merge] INFO
02:43:02+ cp etc/omero.properties etc/omero.properties.bak
02:43:02+ rm etc/omero.properties
02:43:02+ touch etc/omero.properties
02:43:02++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
02:43:02+ ne=249
02:43:02++ sed -n 1,249p etc/omero.properties.bak
02:43:02+ line='##
02:43:02## omero.properties
02:43:02## ----------------
02:43:02##
02:43:02## DO NOT EDIT!
02:43:02##
02:43:02##
02:43:02## Any of these properties can be altered by using `omero config`. MODIFYING
02:43:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
02:43:02## at compile time!
02:43:02##
02:43:02## For an overview of these properties, see
02:43:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html02:43:02##
02:43:02## Properties marked with "DEVELOPMENT" should not be used in production.
02:43:0202:43:02# Comma separated list of Ice transports available to clients. The default
02:43:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
02:43:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
02:43:02# will prevent all non-encrypted connections to the OMERO server.
02:43:02#
02:43:02# Additionally, there are two experimental values for using websockets:
02:43:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
02:43:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
02:43:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
02:43:02#
02:43:02# Note: When using websockets behind a web server like nginx, additional
02:43:02# configuration may be needed.
02:43:02omero.client.icetransports=ssl,tcp
02:43:0202:43:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
02:43:02# server
02:43:02omero.ports.prefix=
02:43:0202:43:02# The Glacier2 SSL port number to use
02:43:02omero.ports.ssl=4064
02:43:0202:43:02# The Glacier2 TCP port number to use (unencrypted)
02:43:02omero.ports.tcp=4063
02:43:0202:43:02# The Glacier2 WSS port number to use
02:43:02omero.ports.wss=4066
02:43:0202:43:02# The Glacier2 WS port number to use (unencrypted)
02:43:02omero.ports.ws=4065
02:43:0202:43:02# The IceGrid registry port number to use
02:43:02omero.ports.registry=4061
02:43:0202:43:02#############################################
02:43:02## JVM configuration
02:43:02##
02:43:02## Note: changes to the omero.jvmcfg properties
02:43:02## will *not* be reflected in OMERO.server
02:43:02## since they are defined in OMERO.py.
02:43:02#############################################
02:43:02## (For documentation only)
02:43:02# Memory strategy which will be used by default.
02:43:02# Options include: percent, manual
02:43:02omero.jvmcfg.strategy=percent
02:43:0202:43:02## (For documentation only)
02:43:02# Explicit value for the `-Xmx` argument, e.g.
02:43:02# "1g"
02:43:02omero.jvmcfg.heap_size=
02:43:0202:43:02## (For documentation only)
02:43:02# Explicit value for the MaxPermSize argument
02:43:02# to the JVM, e.g. "500M". Ignored for Java8+
02:43:02omero.jvmcfg.perm_gen=
02:43:0202:43:02## (For documentation only)
02:43:02# Toggles on or off heap dumps on OOMs. Default is "off".
02:43:02# The special value "tmp" will create the heap dumps in
02:43:02# your temp directory.
02:43:02omero.jvmcfg.heap_dump=
02:43:0202:43:02## (For documentation only)
02:43:02# Used only by the percent strategy. An integer between 0
02:43:02# and 100 which is the percent of active memory that will
02:43:02# be used by the service.
02:43:02omero.jvmcfg.percent=
02:43:0202:43:02## (For documentation only)
02:43:02# Contains other parameters which should be passed to the
02:43:02# JVM. The value of "append" is treated as if it were on
02:43:02# the command line so will be separated on whitespace.
02:43:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
02:43:02# results in two new arguments.
02:43:02# Note that when using `config set` from the command line
02:43:02# one may need to give a prior `--` option to prevent a value
02:43:02# starting with `-` from already being parsed as an option,
02:43:02# and values may need quoting to prevent whitespace or other
02:43:02# significant characters from being interpreted prematurely.
02:43:0202:43:02omero.jvmcfg.append=
02:43:0202:43:02## (For documentation only)
02:43:02# Manual override of the total system memory that
02:43:02# OMERO will *think* is present on the local OS (MB).
02:43:02# If unset, an attempt will be made to detect the actual
02:43:02# amount: first by using the Python library `psutil` and
02:43:02# if that is not installed, by running a Java tool. If
02:43:02# neither works, 4.0GB is assumed.
02:43:02omero.jvmcfg.system_memory=
02:43:0202:43:02## (For documentation only)
02:43:02# Suggestion for strategies as to the minimum memory
02:43:02# that they will use for calculating JVM settings (MB).
02:43:02omero.jvmcfg.min_system_memory=3414
02:43:0202:43:02## (For documentation only)
02:43:02# Suggestion for strategies as to the maximum memory
02:43:02# that they will use for calculating JVM settings (MB).
02:43:02omero.jvmcfg.max_system_memory=48000
02:43:0202:43:0202:43:02#############################################
02:43:02## Logging properties
02:43:02##
02:43:02## Note: changes to the default omero.logging values in
02:43:02## this file will *not* be reflected in OMERO.server
02:43:02## since they are defined in OMERO.py
02:43:02#############################################
02:43:0202:43:02## (For documentation only)
02:43:02# Relative server directory where the log files should be stored.
02:43:02omero.logging.directory=var/log/
02:43:0202:43:02## (For documentation only)
02:43:02# Whether the server log files should be rotated at a certain time
02:43:02# interval. If true, log files will be rolled over at midnight.
02:43:02# Otherwise, log files will be rolled over at a predetermined size,
02:43:02# see omero.logging.logsize for more information.
02:43:02omero.logging.timedlog=false
02:43:0202:43:02## (For documentation only)
02:43:02# If omero.logging.timedlog is false or unset, specifies the
02:43:02# maximum size of the server log files in bytes above which a
02:43:02# new log file should be created.
02:43:02omero.logging.logsize=5000000
02:43:0202:43:02## (For documentation only)
02:43:02# If omero.logging.timedlog is false or unset, specifies the
02:43:02# number of old server log files that should be kept. Old log
02:43:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
02:43:02omero.logging.lognum=9
02:43:0202:43:02## (For documentation only)
02:43:02# Specifies the threshold for the Python servers log files. Logging messages
02:43:02# which are less severe than this value will be ignored. For a list of
02:43:02# available values, see https://docs.python.org/3/library/logging.html#levels.
02:43:02omero.logging.level=20
02:43:0202:43:02#############################################
02:43:02## Ice overrides
02:43:02##
02:43:02## Though not used directly by OMERO, a number
02:43:02## of properties prefixed with "Ice.*" will
02:43:02## alter the behavior of the OMERO runtime
02:43:02## by configuring the Ice communicators. For a
02:43:02## full listing see:
02:43:02##
02:43:02## http://doc.zeroc.com/display/Ice/Property+Reference02:43:02## For more information see
02:43:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start02:43:02#############################################
02:43:0202:43:02# Disable IPv6 by setting to 0. Only needed in
02:43:02# certain situations.
02:43:02Ice.IPv6=1
02:43:0202:43:02# Glacier2Template IceSSL defaults and overrides,
02:43:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
02:43:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
02:43:02# update the corresponding IceSSL. property.
02:43:02omero.glacier2.IceSSL=
02:43:0202:43:02# Glacier2Template SSL maximum allowed protocol (mac bug)
02:43:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
02:43:02# Glacier2Template SSL allowed cipher suites
02:43:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
02:43:02# Glacier2Template SSL verification requirements
02:43:02omero.glacier2.IceSSL.VerifyPeer=0
02:43:02# Glacier2Template SSL allowed protocols
02:43:02omero.glacier2.IceSSL.Protocols=tls1
02:43:0202:43:02# Override the default set of OMERO services.
02:43:02# For example, to run OMERO.server with Blitz and Tables only
02:43:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
02:43:02# set this to ``master:Blitz-0,Tables-0``.
02:43:02# Also use this to distribute OMERO services across multiple nodes,
02:43:02# for example:
02:43:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
02:43:02# See
02:43:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples02:43:02omero.server.nodedescriptors=
02:43:0202:43:02#############################################
02:43:02## Darwin (OS X) specific defaults for templated configuration files only.
02:43:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
02:43:02## file.
02:43:02## Do not set these properties in ``omero config``, instead set the original
02:43:02## ``xxx.yyy`` property
02:43:02#############################################
02:43:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
02:43:0202:43:02## (For documentation only)
02:43:02# Name of the Python module to use when starting the Tables service
02:43:02omero.tables.module=runTables
02:43:0202:43:02#############################################
02:43:02## Server product name for release artifacts
02:43:02#############################################
02:43:02product.name=OMERO.server
02:43:0202:43:02#############################################
02:43:02### Properties below this marker are ignored by
02:43:02### omero.install.config_parser.PropertyParser
02:43:02### END
02:43:0202:43:02#############################################
02:43:02## Library versions
02:43:02#############################################
02:43:02##
02:43:02versions.findbugs=1.2.1
02:43:02versions.ice36=3.6.5
02:43:02versions.ice36_lib=36
02:43:02## internal
02:43:02versions.omeroshares36=3.6.3
02:43:02versions.omeromock36=3.6.3
02:43:02versions.icedb36=3.6.3
02:43:02versions.ipython=1.2.1
02:43:0202:43:02versions.janino=2.5.10
02:43:0202:43:02versions.reportng=1.1.1
02:43:0202:43:02versions.testng=7.5
02:43:02versions.velocity=1.4
02:43:0202:43:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE02:43:02versions.omero-scripts-url=${versions.omero-pypi}
02:43:0202:43:02###
02:43:02### Appended Values
02:43:02###
02:43:0202:43:02## Internal dependencies'
02:43:02+ echo '##
02:43:02## omero.properties
02:43:02## ----------------
02:43:02##
02:43:02## DO NOT EDIT!
02:43:02##
02:43:02##
02:43:02## Any of these properties can be altered by using `omero config`. MODIFYING
02:43:02## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
02:43:02## at compile time!
02:43:02##
02:43:02## For an overview of these properties, see
02:43:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html02:43:02##
02:43:02## Properties marked with "DEVELOPMENT" should not be used in production.
02:43:0202:43:02# Comma separated list of Ice transports available to clients. The default
02:43:02# value ("ssl,tcp") instructs Ice to open the ports specified by the
02:43:02# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
02:43:02# will prevent all non-encrypted connections to the OMERO server.
02:43:02#
02:43:02# Additionally, there are two experimental values for using websockets:
02:43:02# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
02:43:02# that are opened are controlled by the omero.ports.ws and omero.ports.wss
02:43:02# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
02:43:02#
02:43:02# Note: When using websockets behind a web server like nginx, additional
02:43:02# configuration may be needed.
02:43:02omero.client.icetransports=ssl,tcp
02:43:0202:43:02# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
02:43:02# server
02:43:02omero.ports.prefix=
02:43:0202:43:02# The Glacier2 SSL port number to use
02:43:02omero.ports.ssl=4064
02:43:0202:43:02# The Glacier2 TCP port number to use (unencrypted)
02:43:02omero.ports.tcp=4063
02:43:0202:43:02# The Glacier2 WSS port number to use
02:43:02omero.ports.wss=4066
02:43:0202:43:02# The Glacier2 WS port number to use (unencrypted)
02:43:02omero.ports.ws=4065
02:43:0202:43:02# The IceGrid registry port number to use
02:43:02omero.ports.registry=4061
02:43:0202:43:02#############################################
02:43:02## JVM configuration
02:43:02##
02:43:02## Note: changes to the omero.jvmcfg properties
02:43:02## will *not* be reflected in OMERO.server
02:43:02## since they are defined in OMERO.py.
02:43:02#############################################
02:43:02## (For documentation only)
02:43:02# Memory strategy which will be used by default.
02:43:02# Options include: percent, manual
02:43:02omero.jvmcfg.strategy=percent
02:43:0202:43:02## (For documentation only)
02:43:02# Explicit value for the `-Xmx` argument, e.g.
02:43:02# "1g"
02:43:02omero.jvmcfg.heap_size=
02:43:0202:43:02## (For documentation only)
02:43:02# Explicit value for the MaxPermSize argument
02:43:02# to the JVM, e.g. "500M". Ignored for Java8+
02:43:02omero.jvmcfg.perm_gen=
02:43:0202:43:02## (For documentation only)
02:43:02# Toggles on or off heap dumps on OOMs. Default is "off".
02:43:02# The special value "tmp" will create the heap dumps in
02:43:02# your temp directory.
02:43:02omero.jvmcfg.heap_dump=
02:43:0202:43:02## (For documentation only)
02:43:02# Used only by the percent strategy. An integer between 0
02:43:02# and 100 which is the percent of active memory that will
02:43:02# be used by the service.
02:43:02omero.jvmcfg.percent=
02:43:0202:43:02## (For documentation only)
02:43:02# Contains other parameters which should be passed to the
02:43:02# JVM. The value of "append" is treated as if it were on
02:43:02# the command line so will be separated on whitespace.
02:43:02# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
02:43:02# results in two new arguments.
02:43:02# Note that when using `config set` from the command line
02:43:02# one may need to give a prior `--` option to prevent a value
02:43:02# starting with `-` from already being parsed as an option,
02:43:02# and values may need quoting to prevent whitespace or other
02:43:02# significant characters from being interpreted prematurely.
02:43:0202:43:02omero.jvmcfg.append=
02:43:0202:43:02## (For documentation only)
02:43:02# Manual override of the total system memory that
02:43:02# OMERO will *think* is present on the local OS (MB).
02:43:02# If unset, an attempt will be made to detect the actual
02:43:02# amount: first by using the Python library `psutil` and
02:43:02# if that is not installed, by running a Java tool. If
02:43:02# neither works, 4.0GB is assumed.
02:43:02omero.jvmcfg.system_memory=
02:43:0202:43:02## (For documentation only)
02:43:02# Suggestion for strategies as to the minimum memory
02:43:02# that they will use for calculating JVM settings (MB).
02:43:02omero.jvmcfg.min_system_memory=3414
02:43:0202:43:02## (For documentation only)
02:43:02# Suggestion for strategies as to the maximum memory
02:43:02# that they will use for calculating JVM settings (MB).
02:43:02omero.jvmcfg.max_system_memory=48000
02:43:0202:43:0202:43:02#############################################
02:43:02## Logging properties
02:43:02##
02:43:02## Note: changes to the default omero.logging values in
02:43:02## this file will *not* be reflected in OMERO.server
02:43:02## since they are defined in OMERO.py
02:43:02#############################################
02:43:0202:43:02## (For documentation only)
02:43:02# Relative server directory where the log files should be stored.
02:43:02omero.logging.directory=var/log/
02:43:0202:43:02## (For documentation only)
02:43:02# Whether the server log files should be rotated at a certain time
02:43:02# interval. If true, log files will be rolled over at midnight.
02:43:02# Otherwise, log files will be rolled over at a predetermined size,
02:43:02# see omero.logging.logsize for more information.
02:43:02omero.logging.timedlog=false
02:43:0202:43:02## (For documentation only)
02:43:02# If omero.logging.timedlog is false or unset, specifies the
02:43:02# maximum size of the server log files in bytes above which a
02:43:02# new log file should be created.
02:43:02omero.logging.logsize=5000000
02:43:0202:43:02## (For documentation only)
02:43:02# If omero.logging.timedlog is false or unset, specifies the
02:43:02# number of old server log files that should be kept. Old log
02:43:02# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
02:43:02omero.logging.lognum=9
02:43:0202:43:02## (For documentation only)
02:43:02# Specifies the threshold for the Python servers log files. Logging messages
02:43:02# which are less severe than this value will be ignored. For a list of
02:43:02# available values, see https://docs.python.org/3/library/logging.html#levels.
02:43:02omero.logging.level=20
02:43:0202:43:02#############################################
02:43:02## Ice overrides
02:43:02##
02:43:02## Though not used directly by OMERO, a number
02:43:02## of properties prefixed with "Ice.*" will
02:43:02## alter the behavior of the OMERO runtime
02:43:02## by configuring the Ice communicators. For a
02:43:02## full listing see:
02:43:02##
02:43:02## http://doc.zeroc.com/display/Ice/Property+Reference02:43:02## For more information see
02:43:02## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start02:43:02#############################################
02:43:0202:43:02# Disable IPv6 by setting to 0. Only needed in
02:43:02# certain situations.
02:43:02Ice.IPv6=1
02:43:0202:43:02# Glacier2Template IceSSL defaults and overrides,
02:43:02# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
02:43:02# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
02:43:02# update the corresponding IceSSL. property.
02:43:02omero.glacier2.IceSSL=
02:43:0202:43:02# Glacier2Template SSL maximum allowed protocol (mac bug)
02:43:02omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
02:43:02# Glacier2Template SSL allowed cipher suites
02:43:02omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
02:43:02# Glacier2Template SSL verification requirements
02:43:02omero.glacier2.IceSSL.VerifyPeer=0
02:43:02# Glacier2Template SSL allowed protocols
02:43:02omero.glacier2.IceSSL.Protocols=tls1
02:43:0202:43:02# Override the default set of OMERO services.
02:43:02# For example, to run OMERO.server with Blitz and Tables only
02:43:02# (i.e. disable Processor, DropBox, Indexer, PixelData)
02:43:02# set this to ``master:Blitz-0,Tables-0``.
02:43:02# Also use this to distribute OMERO services across multiple nodes,
02:43:02# for example:
02:43:02# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
02:43:02# See
02:43:02# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples02:43:02omero.server.nodedescriptors=
02:43:0202:43:02#############################################
02:43:02## Darwin (OS X) specific defaults for templated configuration files only.
02:43:02## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
02:43:02## file.
02:43:02## Do not set these properties in ``omero config``, instead set the original
02:43:02## ``xxx.yyy`` property
02:43:02#############################################
02:43:02_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
02:43:0202:43:02## (For documentation only)
02:43:02# Name of the Python module to use when starting the Tables service
02:43:02omero.tables.module=runTables
02:43:0202:43:02#############################################
02:43:02## Server product name for release artifacts
02:43:02#############################################
02:43:02product.name=OMERO.server
02:43:0202:43:02#############################################
02:43:02### Properties below this marker are ignored by
02:43:02### omero.install.config_parser.PropertyParser
02:43:02### END
02:43:0202:43:02#############################################
02:43:02## Library versions
02:43:02#############################################
02:43:02##
02:43:02versions.findbugs=1.2.1
02:43:02versions.ice36=3.6.5
02:43:02versions.ice36_lib=36
02:43:02## internal
02:43:02versions.omeroshares36=3.6.3
02:43:02versions.omeromock36=3.6.3
02:43:02versions.icedb36=3.6.3
02:43:02versions.ipython=1.2.1
02:43:0202:43:02versions.janino=2.5.10
02:43:0202:43:02versions.reportng=1.1.1
02:43:0202:43:02versions.testng=7.5
02:43:02versions.velocity=1.4
02:43:0202:43:02versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE02:43:02versions.omero-scripts-url=${versions.omero-pypi}
02:43:0202:43:02###
02:43:02### Appended Values
02:43:02###
02:43:0202:43:02## Internal dependencies'
02:43:02+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/02:43:02+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive02:43:02+ echo versions.scripts-prefix=
02:43:02+ echo versions.scripts=merge_ci
02:43:02+ cat /home/omero/workspace/OMERO-push/version.properties
02:43:02+ git commit -a -m 'Add version.properties to etc/omero.properties'
02:43:02[detached HEAD bca435d34b] Add version.properties to etc/omero.properties
02:43:02 1 file changed, 46 insertions(+), 7 deletions(-)
02:43:02+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
02:43:04To github.com:snoopycrimecop/openmicroscopy.git
02:43:04 + 468b580770...bca435d34b HEAD -> merge_ci (forced update)
02:43:04Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
