15:38:08Started by upstream project "Trigger" build number 7415:38:08originally caused by:
15:38:08 Started by user devspace15:38:08Running as SYSTEM
15:38:08Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
15:38:08The recommended git tool is: NONE
15:38:08No credentials specified
15:38:08 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
15:38:08Fetching changes from the remote Git repository
15:38:08 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
15:38:08Fetching upstream changes from https://github.com/ome/openmicroscopy.git15:38:08 > git --version # timeout=10
15:38:08 > git --version # 'git version 2.52.0'
15:38:08 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
15:38:13 > git rev-parse origin/develop^{commit} # timeout=10
15:38:13Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop)
15:38:13 > git config core.sparsecheckout # timeout=10
15:38:13 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30
15:38:32Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix"
15:38:32 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
15:38:32Cleaning workspace
15:38:32 > git rev-parse --verify HEAD # timeout=10
15:38:32Resetting working tree
15:38:32 > git reset --hard # timeout=10
15:38:33 > git clean -fdx # timeout=10
15:38:33Copied 1 artifact from "OMERO-python-superbuild-build" build number 5415:38:33[OMERO-push] $ /bin/bash -xe /tmp/jenkins1722628898511984090.sh
15:38:33+ python3.11 -mvenv venv
15:38:37+ source /home/omero/workspace/OMERO-push/venv/bin/activate
15:38:37++ deactivate nondestructive
15:38:37++ '[' -n '' ']'
15:38:37++ '[' -n '' ']'
15:38:37++ hash -r
15:38:37++ '[' -n '' ']'
15:38:37++ unset VIRTUAL_ENV
15:38:37++ unset VIRTUAL_ENV_PROMPT
15:38:37++ '[' '!' nondestructive = nondestructive ']'
15:38:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
15:38:37++ export VIRTUAL_ENV
15:38:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:38:37++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:38:37++ export PATH
15:38:37++ '[' -n '' ']'
15:38:37++ '[' -z '' ']'
15:38:37++ _OLD_VIRTUAL_PS1=
15:38:37++ PS1='(venv) '
15:38:37++ export PS1
15:38:37++ VIRTUAL_ENV_PROMPT='(venv) '
15:38:37++ export VIRTUAL_ENV_PROMPT
15:38:37++ hash -r
15:38:37+ pip install -U pip
15:38:42Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
15:38:43+ pip install -U scc
15:38:44Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
15:38:44Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
15:38:44Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
15:38:44Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
15:38:44Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
15:38:44Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
15:38:44Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
15:38:44Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
15:38:44Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
15:38:44Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
15:38:44Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
15:38:44Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
15:38:44Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
15:38:44Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
15:38:44Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
15:38:44Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
15:38:44Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
15:38:44Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
15:38:44Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
15:38:44+ test -e src
15:38:44+ cd src
15:38:44++ git config github.user
15:38:44+ user=snoopycrimecop
15:38:44+ scc merge develop --no-ask --reset --shallow -S success-only
15:38:542026-08-28 15:38:54,324 [ scc.merge] INFO Merging Pull Request(s) based on develop
15:38:542026-08-28 15:38:54,324 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
15:38:542026-08-28 15:38:54,325 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
15:38:542026-08-28 15:38:54,325 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
15:38:542026-08-28 15:38:54,325 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
15:38:542026-08-28 15:38:54,325 [ scc.merge] INFO Excluding Pull Request(s) without successful status
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO Repository: ome/openmicroscopy
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO Excluded PRs:
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO Already up to date.
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO Merged PRs:
15:39:182026-08-28 15:39:18,607 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
15:39:182026-08-28 15:39:18,608 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
15:39:182026-08-28 15:39:18,608 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
15:39:182026-08-28 15:39:18,608 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
15:39:182026-08-28 15:39:18,608 [ scc.merge] INFO
15:39:18+ cp etc/omero.properties etc/omero.properties.bak
15:39:18+ rm etc/omero.properties
15:39:18+ touch etc/omero.properties
15:39:18++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
15:39:18+ ne=252
15:39:18++ sed -n 1,252p etc/omero.properties.bak
15:39:18+ line='##
15:39:18## omero.properties
15:39:18## ----------------
15:39:18##
15:39:18## DO NOT EDIT!
15:39:18##
15:39:18##
15:39:18## Any of these properties can be altered by using `omero config`. MODIFYING
15:39:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
15:39:18## at compile time!
15:39:18##
15:39:18## For an overview of these properties, see
15:39:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html15:39:18##
15:39:18## Properties marked with "DEVELOPMENT" should not be used in production.
15:39:1815:39:18# Comma separated list of Ice transports available to clients. The default
15:39:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
15:39:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
15:39:18# will prevent all non-encrypted connections to the OMERO server.
15:39:18#
15:39:18# Additionally, there are two experimental values for using websockets:
15:39:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
15:39:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
15:39:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
15:39:18#
15:39:18# Note: When using websockets behind a web server like nginx, additional
15:39:18# configuration may be needed.
15:39:18omero.client.icetransports=ssl,tcp
15:39:1815:39:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
15:39:18# server
15:39:18omero.ports.prefix=
15:39:1815:39:18# The Glacier2 SSL port number to use
15:39:18omero.ports.ssl=4064
15:39:1815:39:18# The Glacier2 TCP port number to use (unencrypted)
15:39:18omero.ports.tcp=4063
15:39:1815:39:18# The Glacier2 WSS port number to use
15:39:18omero.ports.wss=4066
15:39:1815:39:18# The Glacier2 WS port number to use (unencrypted)
15:39:18omero.ports.ws=4065
15:39:1815:39:18# The IceGrid registry port number to use
15:39:18omero.ports.registry=4061
15:39:1815:39:18#############################################
15:39:18## JVM configuration
15:39:18##
15:39:18## Note: changes to the omero.jvmcfg properties
15:39:18## will *not* be reflected in OMERO.server
15:39:18## since they are defined in OMERO.py.
15:39:18#############################################
15:39:18## (For documentation only)
15:39:18# Memory strategy which will be used by default.
15:39:18# Options include: percent, manual
15:39:18omero.jvmcfg.strategy=percent
15:39:1815:39:18## (For documentation only)
15:39:18# Explicit value for the `-Xmx` argument, e.g.
15:39:18# "1g"
15:39:18omero.jvmcfg.heap_size=
15:39:1815:39:18## (For documentation only)
15:39:18# Explicit value for the MaxPermSize argument
15:39:18# to the JVM, e.g. "500M". Ignored for Java8+
15:39:18omero.jvmcfg.perm_gen=
15:39:1815:39:18## (For documentation only)
15:39:18# Toggles on or off heap dumps on OOMs. Default is "off".
15:39:18# The special value "tmp" will create the heap dumps in
15:39:18# your temp directory.
15:39:18omero.jvmcfg.heap_dump=
15:39:1815:39:18## (For documentation only)
15:39:18# Used only by the percent strategy. An integer between 0
15:39:18# and 100 which is the percent of active memory that will
15:39:18# be used by the service.
15:39:18omero.jvmcfg.percent=
15:39:1815:39:18## (For documentation only)
15:39:18# Contains other parameters which should be passed to the
15:39:18# JVM. The value of "append" is treated as if it were on
15:39:18# the command line so will be separated on whitespace.
15:39:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
15:39:18# results in two new arguments.
15:39:18# Note that when using `config set` from the command line
15:39:18# one may need to give a prior `--` option to prevent a value
15:39:18# starting with `-` from already being parsed as an option,
15:39:18# and values may need quoting to prevent whitespace or other
15:39:18# significant characters from being interpreted prematurely.
15:39:1815:39:18omero.jvmcfg.append=
15:39:1815:39:18## (For documentation only)
15:39:18# Manual override of the total system memory that
15:39:18# OMERO will *think* is present on the local OS (MB).
15:39:18# If unset, an attempt will be made to detect the actual
15:39:18# amount: first by using the Python library `psutil` and
15:39:18# if that is not installed, by running a Java tool. If
15:39:18# neither works, 4.0GB is assumed.
15:39:18omero.jvmcfg.system_memory=
15:39:1815:39:18## (For documentation only)
15:39:18# Suggestion for strategies as to the minimum memory
15:39:18# that they will use for calculating JVM settings (MB).
15:39:18omero.jvmcfg.min_system_memory=3414
15:39:1815:39:18## (For documentation only)
15:39:18# Suggestion for strategies as to the maximum memory
15:39:18# that they will use for calculating JVM settings (MB).
15:39:18omero.jvmcfg.max_system_memory=48000
15:39:1815:39:1815:39:18#############################################
15:39:18## Logging properties
15:39:18##
15:39:18## Note: changes to the default omero.logging values in
15:39:18## this file will *not* be reflected in OMERO.server
15:39:18## since they are defined in OMERO.py
15:39:18#############################################
15:39:1815:39:18## (For documentation only)
15:39:18# Relative server directory where the log files should be stored.
15:39:18omero.logging.directory=var/log/
15:39:1815:39:18## (For documentation only)
15:39:18# Whether the server log files should be rotated at a certain time
15:39:18# interval. If true, log files will be rolled over at midnight.
15:39:18# Otherwise, log files will be rolled over at a predetermined size,
15:39:18# see omero.logging.logsize for more information.
15:39:18omero.logging.timedlog=false
15:39:1815:39:18## (For documentation only)
15:39:18# If omero.logging.timedlog is false or unset, specifies the
15:39:18# maximum size of the server log files in bytes above which a
15:39:18# new log file should be created.
15:39:18omero.logging.logsize=5000000
15:39:1815:39:18## (For documentation only)
15:39:18# If omero.logging.timedlog is false or unset, specifies the
15:39:18# number of old server log files that should be kept. Old log
15:39:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
15:39:18omero.logging.lognum=9
15:39:1815:39:18## (For documentation only)
15:39:18# Specifies the threshold for the Python servers log files. Logging messages
15:39:18# which are less severe than this value will be ignored. For a list of
15:39:18# available values, see https://docs.python.org/3/library/logging.html#levels.
15:39:18omero.logging.level=20
15:39:1815:39:18#############################################
15:39:18## Ice overrides
15:39:18##
15:39:18## Though not used directly by OMERO, a number
15:39:18## of properties prefixed with "Ice.*" will
15:39:18## alter the behavior of the OMERO runtime
15:39:18## by configuring the Ice communicators. For a
15:39:18## full listing see:
15:39:18##
15:39:18## http://doc.zeroc.com/display/Ice/Property+Reference15:39:18## For more information see
15:39:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start15:39:18#############################################
15:39:1815:39:18# Disable IPv6 by setting to 0. Only needed in
15:39:18# certain situations.
15:39:18Ice.IPv6=1
15:39:1815:39:18# Glacier2Template IceSSL defaults and overrides,
15:39:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
15:39:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
15:39:18# update the corresponding IceSSL. property.
15:39:18omero.glacier2.IceSSL=
15:39:1815:39:18# Glacier2Template SSL maximum allowed protocol (mac bug)
15:39:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
15:39:18# Glacier2Template SSL allowed cipher suites
15:39:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
15:39:18# Glacier2Template SSL verification requirements
15:39:18omero.glacier2.IceSSL.VerifyPeer=0
15:39:18# Glacier2Template SSL allowed protocols
15:39:18omero.glacier2.IceSSL.Protocols=tls1
15:39:1815:39:18# Override the default set of OMERO services.
15:39:18# For example, to run OMERO.server with Blitz and Tables only
15:39:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
15:39:18# set this to ``master:Blitz-0,Tables-0``.
15:39:18# Also use this to distribute OMERO services across multiple nodes,
15:39:18# for example:
15:39:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
15:39:18# See
15:39:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples15:39:18omero.server.nodedescriptors=
15:39:1815:39:18#############################################
15:39:18## Darwin (OS X) specific defaults for templated configuration files only.
15:39:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
15:39:18## file.
15:39:18## Do not set these properties in ``omero config``, instead set the original
15:39:18## ``xxx.yyy`` property
15:39:18#############################################
15:39:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
15:39:1815:39:18## (For documentation only)
15:39:18# Name of the Python module to use when starting the Tables service
15:39:18omero.tables.module=runTables
15:39:1815:39:18#############################################
15:39:18## Server product name for release artifacts
15:39:18#############################################
15:39:18product.name=OMERO.server
15:39:1815:39:18#############################################
15:39:18### Properties below this marker are ignored by
15:39:18### omero.install.config_parser.PropertyParser
15:39:18### END
15:39:1815:39:18#############################################
15:39:18## Library versions
15:39:18#############################################
15:39:18##
15:39:18versions.findbugs=1.2.1
15:39:18versions.ice36=3.6.5
15:39:18versions.ice36_lib=36
15:39:18## internal
15:39:18versions.omeroshares36=3.6.3
15:39:18versions.omeromock36=3.6.3
15:39:18versions.icedb36=3.6.3
15:39:18versions.ipython=1.2.1
15:39:1815:39:18versions.janino=2.5.10
15:39:1815:39:18versions.reportng=1.1.1
15:39:1815:39:18versions.testng=7.5
15:39:18versions.velocity=1.4
15:39:1815:39:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE15:39:18versions.omero-scripts-url=${versions.omero-pypi}
15:39:1815:39:18# hard coded, should not be picked up by scc for now!
15:39:18versions.omero-zarr-pixel-buffer=0.7.0-rc3
15:39:1815:39:18###
15:39:18### Appended Values
15:39:18###
15:39:1815:39:18## Internal dependencies'
15:39:18+ echo '##
15:39:18## omero.properties
15:39:18## ----------------
15:39:18##
15:39:18## DO NOT EDIT!
15:39:18##
15:39:18##
15:39:18## Any of these properties can be altered by using `omero config`. MODIFYING
15:39:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
15:39:18## at compile time!
15:39:18##
15:39:18## For an overview of these properties, see
15:39:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html15:39:18##
15:39:18## Properties marked with "DEVELOPMENT" should not be used in production.
15:39:1815:39:18# Comma separated list of Ice transports available to clients. The default
15:39:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
15:39:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
15:39:18# will prevent all non-encrypted connections to the OMERO server.
15:39:18#
15:39:18# Additionally, there are two experimental values for using websockets:
15:39:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
15:39:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
15:39:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
15:39:18#
15:39:18# Note: When using websockets behind a web server like nginx, additional
15:39:18# configuration may be needed.
15:39:18omero.client.icetransports=ssl,tcp
15:39:1815:39:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
15:39:18# server
15:39:18omero.ports.prefix=
15:39:1815:39:18# The Glacier2 SSL port number to use
15:39:18omero.ports.ssl=4064
15:39:1815:39:18# The Glacier2 TCP port number to use (unencrypted)
15:39:18omero.ports.tcp=4063
15:39:1815:39:18# The Glacier2 WSS port number to use
15:39:18omero.ports.wss=4066
15:39:1815:39:18# The Glacier2 WS port number to use (unencrypted)
15:39:18omero.ports.ws=4065
15:39:1815:39:18# The IceGrid registry port number to use
15:39:18omero.ports.registry=4061
15:39:1815:39:18#############################################
15:39:18## JVM configuration
15:39:18##
15:39:18## Note: changes to the omero.jvmcfg properties
15:39:18## will *not* be reflected in OMERO.server
15:39:18## since they are defined in OMERO.py.
15:39:18#############################################
15:39:18## (For documentation only)
15:39:18# Memory strategy which will be used by default.
15:39:18# Options include: percent, manual
15:39:18omero.jvmcfg.strategy=percent
15:39:1815:39:18## (For documentation only)
15:39:18# Explicit value for the `-Xmx` argument, e.g.
15:39:18# "1g"
15:39:18omero.jvmcfg.heap_size=
15:39:1815:39:18## (For documentation only)
15:39:18# Explicit value for the MaxPermSize argument
15:39:18# to the JVM, e.g. "500M". Ignored for Java8+
15:39:18omero.jvmcfg.perm_gen=
15:39:1815:39:18## (For documentation only)
15:39:18# Toggles on or off heap dumps on OOMs. Default is "off".
15:39:18# The special value "tmp" will create the heap dumps in
15:39:18# your temp directory.
15:39:18omero.jvmcfg.heap_dump=
15:39:1815:39:18## (For documentation only)
15:39:18# Used only by the percent strategy. An integer between 0
15:39:18# and 100 which is the percent of active memory that will
15:39:18# be used by the service.
15:39:18omero.jvmcfg.percent=
15:39:1815:39:18## (For documentation only)
15:39:18# Contains other parameters which should be passed to the
15:39:18# JVM. The value of "append" is treated as if it were on
15:39:18# the command line so will be separated on whitespace.
15:39:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
15:39:18# results in two new arguments.
15:39:18# Note that when using `config set` from the command line
15:39:18# one may need to give a prior `--` option to prevent a value
15:39:18# starting with `-` from already being parsed as an option,
15:39:18# and values may need quoting to prevent whitespace or other
15:39:18# significant characters from being interpreted prematurely.
15:39:1815:39:18omero.jvmcfg.append=
15:39:1815:39:18## (For documentation only)
15:39:18# Manual override of the total system memory that
15:39:18# OMERO will *think* is present on the local OS (MB).
15:39:18# If unset, an attempt will be made to detect the actual
15:39:18# amount: first by using the Python library `psutil` and
15:39:18# if that is not installed, by running a Java tool. If
15:39:18# neither works, 4.0GB is assumed.
15:39:18omero.jvmcfg.system_memory=
15:39:1815:39:18## (For documentation only)
15:39:18# Suggestion for strategies as to the minimum memory
15:39:18# that they will use for calculating JVM settings (MB).
15:39:18omero.jvmcfg.min_system_memory=3414
15:39:1815:39:18## (For documentation only)
15:39:18# Suggestion for strategies as to the maximum memory
15:39:18# that they will use for calculating JVM settings (MB).
15:39:18omero.jvmcfg.max_system_memory=48000
15:39:1815:39:1815:39:18#############################################
15:39:18## Logging properties
15:39:18##
15:39:18## Note: changes to the default omero.logging values in
15:39:18## this file will *not* be reflected in OMERO.server
15:39:18## since they are defined in OMERO.py
15:39:18#############################################
15:39:1815:39:18## (For documentation only)
15:39:18# Relative server directory where the log files should be stored.
15:39:18omero.logging.directory=var/log/
15:39:1815:39:18## (For documentation only)
15:39:18# Whether the server log files should be rotated at a certain time
15:39:18# interval. If true, log files will be rolled over at midnight.
15:39:18# Otherwise, log files will be rolled over at a predetermined size,
15:39:18# see omero.logging.logsize for more information.
15:39:18omero.logging.timedlog=false
15:39:1815:39:18## (For documentation only)
15:39:18# If omero.logging.timedlog is false or unset, specifies the
15:39:18# maximum size of the server log files in bytes above which a
15:39:18# new log file should be created.
15:39:18omero.logging.logsize=5000000
15:39:1815:39:18## (For documentation only)
15:39:18# If omero.logging.timedlog is false or unset, specifies the
15:39:18# number of old server log files that should be kept. Old log
15:39:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
15:39:18omero.logging.lognum=9
15:39:1815:39:18## (For documentation only)
15:39:18# Specifies the threshold for the Python servers log files. Logging messages
15:39:18# which are less severe than this value will be ignored. For a list of
15:39:18# available values, see https://docs.python.org/3/library/logging.html#levels.
15:39:18omero.logging.level=20
15:39:1815:39:18#############################################
15:39:18## Ice overrides
15:39:18##
15:39:18## Though not used directly by OMERO, a number
15:39:18## of properties prefixed with "Ice.*" will
15:39:18## alter the behavior of the OMERO runtime
15:39:18## by configuring the Ice communicators. For a
15:39:18## full listing see:
15:39:18##
15:39:18## http://doc.zeroc.com/display/Ice/Property+Reference15:39:18## For more information see
15:39:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start15:39:18#############################################
15:39:1815:39:18# Disable IPv6 by setting to 0. Only needed in
15:39:18# certain situations.
15:39:18Ice.IPv6=1
15:39:1815:39:18# Glacier2Template IceSSL defaults and overrides,
15:39:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
15:39:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
15:39:18# update the corresponding IceSSL. property.
15:39:18omero.glacier2.IceSSL=
15:39:1815:39:18# Glacier2Template SSL maximum allowed protocol (mac bug)
15:39:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
15:39:18# Glacier2Template SSL allowed cipher suites
15:39:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
15:39:18# Glacier2Template SSL verification requirements
15:39:18omero.glacier2.IceSSL.VerifyPeer=0
15:39:18# Glacier2Template SSL allowed protocols
15:39:18omero.glacier2.IceSSL.Protocols=tls1
15:39:1815:39:18# Override the default set of OMERO services.
15:39:18# For example, to run OMERO.server with Blitz and Tables only
15:39:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
15:39:18# set this to ``master:Blitz-0,Tables-0``.
15:39:18# Also use this to distribute OMERO services across multiple nodes,
15:39:18# for example:
15:39:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
15:39:18# See
15:39:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples15:39:18omero.server.nodedescriptors=
15:39:1815:39:18#############################################
15:39:18## Darwin (OS X) specific defaults for templated configuration files only.
15:39:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
15:39:18## file.
15:39:18## Do not set these properties in ``omero config``, instead set the original
15:39:18## ``xxx.yyy`` property
15:39:18#############################################
15:39:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
15:39:1815:39:18## (For documentation only)
15:39:18# Name of the Python module to use when starting the Tables service
15:39:18omero.tables.module=runTables
15:39:1815:39:18#############################################
15:39:18## Server product name for release artifacts
15:39:18#############################################
15:39:18product.name=OMERO.server
15:39:1815:39:18#############################################
15:39:18### Properties below this marker are ignored by
15:39:18### omero.install.config_parser.PropertyParser
15:39:18### END
15:39:1815:39:18#############################################
15:39:18## Library versions
15:39:18#############################################
15:39:18##
15:39:18versions.findbugs=1.2.1
15:39:18versions.ice36=3.6.5
15:39:18versions.ice36_lib=36
15:39:18## internal
15:39:18versions.omeroshares36=3.6.3
15:39:18versions.omeromock36=3.6.3
15:39:18versions.icedb36=3.6.3
15:39:18versions.ipython=1.2.1
15:39:1815:39:18versions.janino=2.5.10
15:39:1815:39:18versions.reportng=1.1.1
15:39:1815:39:18versions.testng=7.5
15:39:18versions.velocity=1.4
15:39:1815:39:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE15:39:18versions.omero-scripts-url=${versions.omero-pypi}
15:39:1815:39:18# hard coded, should not be picked up by scc for now!
15:39:18versions.omero-zarr-pixel-buffer=0.7.0-rc3
15:39:1815:39:18###
15:39:18### Appended Values
15:39:18###
15:39:1815:39:18## Internal dependencies'
15:39:18+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/15:39:18+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive15:39:18+ echo versions.scripts-prefix=
15:39:18+ echo versions.scripts=merge_ci
15:39:18+ cat /home/omero/workspace/OMERO-push/version.properties
15:39:18+ git commit -a -m 'Add version.properties to etc/omero.properties'
15:39:18[detached HEAD bb9a982cb3] Add version.properties to etc/omero.properties
15:39:18 1 file changed, 46 insertions(+), 6 deletions(-)
15:39:18+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
15:39:22To github.com:snoopycrimecop/openmicroscopy.git
15:39:22 + 897cd01437...bb9a982cb3 HEAD -> merge_ci (forced update)
15:39:22Finished: SUCCESS
