10:55:50Started by upstream project "Trigger" build number 7610:55:50originally caused by:
10:55:50 Started by user devspace10:55:50Running as SYSTEM
10:55:50Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
10:55:50The recommended git tool is: NONE
10:55:50No credentials specified
10:55:50 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
10:55:50Fetching changes from the remote Git repository
10:55:50 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
10:55:50Fetching upstream changes from https://github.com/ome/openmicroscopy.git10:55:50 > git --version # timeout=10
10:55:50 > git --version # 'git version 2.52.0'
10:55:50 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:55:52 > git rev-parse origin/develop^{commit} # timeout=10
10:55:52Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop)
10:55:52 > git config core.sparsecheckout # timeout=10
10:55:52 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30
10:55:56Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix"
10:55:56 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
10:55:56Cleaning workspace
10:55:56 > git rev-parse --verify HEAD # timeout=10
10:55:56Resetting working tree
10:55:56 > git reset --hard # timeout=10
10:55:57 > git clean -fdx # timeout=10
10:55:57Copied 1 artifact from "OMERO-python-superbuild-build" build number 5610:55:57[OMERO-push] $ /bin/bash -xe /tmp/jenkins15950241349729611338.sh
10:55:57+ python3.11 -mvenv venv
10:56:00+ source /home/omero/workspace/OMERO-push/venv/bin/activate
10:56:00++ deactivate nondestructive
10:56:00++ '[' -n '' ']'
10:56:00++ '[' -n '' ']'
10:56:00++ hash -r
10:56:00++ '[' -n '' ']'
10:56:00++ unset VIRTUAL_ENV
10:56:00++ unset VIRTUAL_ENV_PROMPT
10:56:00++ '[' '!' nondestructive = nondestructive ']'
10:56:00++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
10:56:00++ export VIRTUAL_ENV
10:56:00++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:56:00++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:56:00++ export PATH
10:56:00++ '[' -n '' ']'
10:56:00++ '[' -z '' ']'
10:56:00++ _OLD_VIRTUAL_PS1=
10:56:00++ PS1='(venv) '
10:56:00++ export PS1
10:56:00++ VIRTUAL_ENV_PROMPT='(venv) '
10:56:00++ export VIRTUAL_ENV_PROMPT
10:56:00++ hash -r
10:56:00+ pip install -U pip
10:56:03Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
10:56:04+ pip install -U scc
10:56:04Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
10:56:04Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
10:56:04Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
10:56:04Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
10:56:04Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
10:56:04Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
10:56:04Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
10:56:04Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
10:56:04Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
10:56:04Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
10:56:04Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
10:56:04Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
10:56:04Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
10:56:04Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
10:56:04Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
10:56:04Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
10:56:04Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
10:56:04Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
10:56:04Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
10:56:05+ test -e src
10:56:05+ cd src
10:56:05++ git config github.user
10:56:05+ user=snoopycrimecop
10:56:05+ scc merge develop --no-ask --reset --shallow -S success-only
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Merging Pull Request(s) based on develop
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
10:56:142026-08-29 10:56:14,658 [ scc.merge] INFO Excluding Pull Request(s) without successful status
10:56:372026-08-29 10:56:37,945 [ scc.merge] INFO Repository: ome/openmicroscopy
10:56:372026-08-29 10:56:37,945 [ scc.merge] INFO Excluded PRs:
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO Already up to date.
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO Merged PRs:
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
10:56:372026-08-29 10:56:37,946 [ scc.merge] INFO
10:56:38+ cp etc/omero.properties etc/omero.properties.bak
10:56:38+ rm etc/omero.properties
10:56:38+ touch etc/omero.properties
10:56:38++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
10:56:38+ ne=252
10:56:38++ sed -n 1,252p etc/omero.properties.bak
10:56:38+ line='##
10:56:38## omero.properties
10:56:38## ----------------
10:56:38##
10:56:38## DO NOT EDIT!
10:56:38##
10:56:38##
10:56:38## Any of these properties can be altered by using `omero config`. MODIFYING
10:56:38## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
10:56:38## at compile time!
10:56:38##
10:56:38## For an overview of these properties, see
10:56:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html10:56:38##
10:56:38## Properties marked with "DEVELOPMENT" should not be used in production.
10:56:3810:56:38# Comma separated list of Ice transports available to clients. The default
10:56:38# value ("ssl,tcp") instructs Ice to open the ports specified by the
10:56:38# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
10:56:38# will prevent all non-encrypted connections to the OMERO server.
10:56:38#
10:56:38# Additionally, there are two experimental values for using websockets:
10:56:38# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
10:56:38# that are opened are controlled by the omero.ports.ws and omero.ports.wss
10:56:38# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
10:56:38#
10:56:38# Note: When using websockets behind a web server like nginx, additional
10:56:38# configuration may be needed.
10:56:38omero.client.icetransports=ssl,tcp
10:56:3810:56:38# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
10:56:38# server
10:56:38omero.ports.prefix=
10:56:3810:56:38# The Glacier2 SSL port number to use
10:56:38omero.ports.ssl=4064
10:56:3810:56:38# The Glacier2 TCP port number to use (unencrypted)
10:56:38omero.ports.tcp=4063
10:56:3810:56:38# The Glacier2 WSS port number to use
10:56:38omero.ports.wss=4066
10:56:3810:56:38# The Glacier2 WS port number to use (unencrypted)
10:56:38omero.ports.ws=4065
10:56:3810:56:38# The IceGrid registry port number to use
10:56:38omero.ports.registry=4061
10:56:3810:56:38#############################################
10:56:38## JVM configuration
10:56:38##
10:56:38## Note: changes to the omero.jvmcfg properties
10:56:38## will *not* be reflected in OMERO.server
10:56:38## since they are defined in OMERO.py.
10:56:38#############################################
10:56:38## (For documentation only)
10:56:38# Memory strategy which will be used by default.
10:56:38# Options include: percent, manual
10:56:38omero.jvmcfg.strategy=percent
10:56:3810:56:38## (For documentation only)
10:56:38# Explicit value for the `-Xmx` argument, e.g.
10:56:38# "1g"
10:56:38omero.jvmcfg.heap_size=
10:56:3810:56:38## (For documentation only)
10:56:38# Explicit value for the MaxPermSize argument
10:56:38# to the JVM, e.g. "500M". Ignored for Java8+
10:56:38omero.jvmcfg.perm_gen=
10:56:3810:56:38## (For documentation only)
10:56:38# Toggles on or off heap dumps on OOMs. Default is "off".
10:56:38# The special value "tmp" will create the heap dumps in
10:56:38# your temp directory.
10:56:38omero.jvmcfg.heap_dump=
10:56:3810:56:38## (For documentation only)
10:56:38# Used only by the percent strategy. An integer between 0
10:56:38# and 100 which is the percent of active memory that will
10:56:38# be used by the service.
10:56:38omero.jvmcfg.percent=
10:56:3810:56:38## (For documentation only)
10:56:38# Contains other parameters which should be passed to the
10:56:38# JVM. The value of "append" is treated as if it were on
10:56:38# the command line so will be separated on whitespace.
10:56:38# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
10:56:38# results in two new arguments.
10:56:38# Note that when using `config set` from the command line
10:56:38# one may need to give a prior `--` option to prevent a value
10:56:38# starting with `-` from already being parsed as an option,
10:56:38# and values may need quoting to prevent whitespace or other
10:56:38# significant characters from being interpreted prematurely.
10:56:3810:56:38omero.jvmcfg.append=
10:56:3810:56:38## (For documentation only)
10:56:38# Manual override of the total system memory that
10:56:38# OMERO will *think* is present on the local OS (MB).
10:56:38# If unset, an attempt will be made to detect the actual
10:56:38# amount: first by using the Python library `psutil` and
10:56:38# if that is not installed, by running a Java tool. If
10:56:38# neither works, 4.0GB is assumed.
10:56:38omero.jvmcfg.system_memory=
10:56:3810:56:38## (For documentation only)
10:56:38# Suggestion for strategies as to the minimum memory
10:56:38# that they will use for calculating JVM settings (MB).
10:56:38omero.jvmcfg.min_system_memory=3414
10:56:3810:56:38## (For documentation only)
10:56:38# Suggestion for strategies as to the maximum memory
10:56:38# that they will use for calculating JVM settings (MB).
10:56:38omero.jvmcfg.max_system_memory=48000
10:56:3810:56:3810:56:38#############################################
10:56:38## Logging properties
10:56:38##
10:56:38## Note: changes to the default omero.logging values in
10:56:38## this file will *not* be reflected in OMERO.server
10:56:38## since they are defined in OMERO.py
10:56:38#############################################
10:56:3810:56:38## (For documentation only)
10:56:38# Relative server directory where the log files should be stored.
10:56:38omero.logging.directory=var/log/
10:56:3810:56:38## (For documentation only)
10:56:38# Whether the server log files should be rotated at a certain time
10:56:38# interval. If true, log files will be rolled over at midnight.
10:56:38# Otherwise, log files will be rolled over at a predetermined size,
10:56:38# see omero.logging.logsize for more information.
10:56:38omero.logging.timedlog=false
10:56:3810:56:38## (For documentation only)
10:56:38# If omero.logging.timedlog is false or unset, specifies the
10:56:38# maximum size of the server log files in bytes above which a
10:56:38# new log file should be created.
10:56:38omero.logging.logsize=5000000
10:56:3810:56:38## (For documentation only)
10:56:38# If omero.logging.timedlog is false or unset, specifies the
10:56:38# number of old server log files that should be kept. Old log
10:56:38# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
10:56:38omero.logging.lognum=9
10:56:3810:56:38## (For documentation only)
10:56:38# Specifies the threshold for the Python servers log files. Logging messages
10:56:38# which are less severe than this value will be ignored. For a list of
10:56:38# available values, see https://docs.python.org/3/library/logging.html#levels.
10:56:38omero.logging.level=20
10:56:3810:56:38#############################################
10:56:38## Ice overrides
10:56:38##
10:56:38## Though not used directly by OMERO, a number
10:56:38## of properties prefixed with "Ice.*" will
10:56:38## alter the behavior of the OMERO runtime
10:56:38## by configuring the Ice communicators. For a
10:56:38## full listing see:
10:56:38##
10:56:38## http://doc.zeroc.com/display/Ice/Property+Reference10:56:38## For more information see
10:56:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start10:56:38#############################################
10:56:3810:56:38# Disable IPv6 by setting to 0. Only needed in
10:56:38# certain situations.
10:56:38Ice.IPv6=1
10:56:3810:56:38# Glacier2Template IceSSL defaults and overrides,
10:56:38# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
10:56:38# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
10:56:38# update the corresponding IceSSL. property.
10:56:38omero.glacier2.IceSSL=
10:56:3810:56:38# Glacier2Template SSL maximum allowed protocol (mac bug)
10:56:38omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
10:56:38# Glacier2Template SSL allowed cipher suites
10:56:38omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
10:56:38# Glacier2Template SSL verification requirements
10:56:38omero.glacier2.IceSSL.VerifyPeer=0
10:56:38# Glacier2Template SSL allowed protocols
10:56:38omero.glacier2.IceSSL.Protocols=tls1
10:56:3810:56:38# Override the default set of OMERO services.
10:56:38# For example, to run OMERO.server with Blitz and Tables only
10:56:38# (i.e. disable Processor, DropBox, Indexer, PixelData)
10:56:38# set this to ``master:Blitz-0,Tables-0``.
10:56:38# Also use this to distribute OMERO services across multiple nodes,
10:56:38# for example:
10:56:38# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
10:56:38# See
10:56:38# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples10:56:38omero.server.nodedescriptors=
10:56:3810:56:38#############################################
10:56:38## Darwin (OS X) specific defaults for templated configuration files only.
10:56:38## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
10:56:38## file.
10:56:38## Do not set these properties in ``omero config``, instead set the original
10:56:38## ``xxx.yyy`` property
10:56:38#############################################
10:56:38_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
10:56:3810:56:38## (For documentation only)
10:56:38# Name of the Python module to use when starting the Tables service
10:56:38omero.tables.module=runTables
10:56:3810:56:38#############################################
10:56:38## Server product name for release artifacts
10:56:38#############################################
10:56:38product.name=OMERO.server
10:56:3810:56:38#############################################
10:56:38### Properties below this marker are ignored by
10:56:38### omero.install.config_parser.PropertyParser
10:56:38### END
10:56:3810:56:38#############################################
10:56:38## Library versions
10:56:38#############################################
10:56:38##
10:56:38versions.findbugs=1.2.1
10:56:38versions.ice36=3.6.5
10:56:38versions.ice36_lib=36
10:56:38## internal
10:56:38versions.omeroshares36=3.6.3
10:56:38versions.omeromock36=3.6.3
10:56:38versions.icedb36=3.6.3
10:56:38versions.ipython=1.2.1
10:56:3810:56:38versions.janino=2.5.10
10:56:3810:56:38versions.reportng=1.1.1
10:56:3810:56:38versions.testng=7.5
10:56:38versions.velocity=1.4
10:56:3810:56:38versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE10:56:38versions.omero-scripts-url=${versions.omero-pypi}
10:56:3810:56:38# hard coded, should not be picked up by scc for now!
10:56:38versions.omero-zarr-pixel-buffer=0.7.0-rc3
10:56:3810:56:38###
10:56:38### Appended Values
10:56:38###
10:56:3810:56:38## Internal dependencies'
10:56:38+ echo '##
10:56:38## omero.properties
10:56:38## ----------------
10:56:38##
10:56:38## DO NOT EDIT!
10:56:38##
10:56:38##
10:56:38## Any of these properties can be altered by using `omero config`. MODIFYING
10:56:38## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
10:56:38## at compile time!
10:56:38##
10:56:38## For an overview of these properties, see
10:56:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html10:56:38##
10:56:38## Properties marked with "DEVELOPMENT" should not be used in production.
10:56:3810:56:38# Comma separated list of Ice transports available to clients. The default
10:56:38# value ("ssl,tcp") instructs Ice to open the ports specified by the
10:56:38# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
10:56:38# will prevent all non-encrypted connections to the OMERO server.
10:56:38#
10:56:38# Additionally, there are two experimental values for using websockets:
10:56:38# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
10:56:38# that are opened are controlled by the omero.ports.ws and omero.ports.wss
10:56:38# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
10:56:38#
10:56:38# Note: When using websockets behind a web server like nginx, additional
10:56:38# configuration may be needed.
10:56:38omero.client.icetransports=ssl,tcp
10:56:3810:56:38# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
10:56:38# server
10:56:38omero.ports.prefix=
10:56:3810:56:38# The Glacier2 SSL port number to use
10:56:38omero.ports.ssl=4064
10:56:3810:56:38# The Glacier2 TCP port number to use (unencrypted)
10:56:38omero.ports.tcp=4063
10:56:3810:56:38# The Glacier2 WSS port number to use
10:56:38omero.ports.wss=4066
10:56:3810:56:38# The Glacier2 WS port number to use (unencrypted)
10:56:38omero.ports.ws=4065
10:56:3810:56:38# The IceGrid registry port number to use
10:56:38omero.ports.registry=4061
10:56:3810:56:38#############################################
10:56:38## JVM configuration
10:56:38##
10:56:38## Note: changes to the omero.jvmcfg properties
10:56:38## will *not* be reflected in OMERO.server
10:56:38## since they are defined in OMERO.py.
10:56:38#############################################
10:56:38## (For documentation only)
10:56:38# Memory strategy which will be used by default.
10:56:38# Options include: percent, manual
10:56:38omero.jvmcfg.strategy=percent
10:56:3810:56:38## (For documentation only)
10:56:38# Explicit value for the `-Xmx` argument, e.g.
10:56:38# "1g"
10:56:38omero.jvmcfg.heap_size=
10:56:3810:56:38## (For documentation only)
10:56:38# Explicit value for the MaxPermSize argument
10:56:38# to the JVM, e.g. "500M". Ignored for Java8+
10:56:38omero.jvmcfg.perm_gen=
10:56:3810:56:38## (For documentation only)
10:56:38# Toggles on or off heap dumps on OOMs. Default is "off".
10:56:38# The special value "tmp" will create the heap dumps in
10:56:38# your temp directory.
10:56:38omero.jvmcfg.heap_dump=
10:56:3810:56:38## (For documentation only)
10:56:38# Used only by the percent strategy. An integer between 0
10:56:38# and 100 which is the percent of active memory that will
10:56:38# be used by the service.
10:56:38omero.jvmcfg.percent=
10:56:3810:56:38## (For documentation only)
10:56:38# Contains other parameters which should be passed to the
10:56:38# JVM. The value of "append" is treated as if it were on
10:56:38# the command line so will be separated on whitespace.
10:56:38# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
10:56:38# results in two new arguments.
10:56:38# Note that when using `config set` from the command line
10:56:38# one may need to give a prior `--` option to prevent a value
10:56:38# starting with `-` from already being parsed as an option,
10:56:38# and values may need quoting to prevent whitespace or other
10:56:38# significant characters from being interpreted prematurely.
10:56:3810:56:38omero.jvmcfg.append=
10:56:3810:56:38## (For documentation only)
10:56:38# Manual override of the total system memory that
10:56:38# OMERO will *think* is present on the local OS (MB).
10:56:38# If unset, an attempt will be made to detect the actual
10:56:38# amount: first by using the Python library `psutil` and
10:56:38# if that is not installed, by running a Java tool. If
10:56:38# neither works, 4.0GB is assumed.
10:56:38omero.jvmcfg.system_memory=
10:56:3810:56:38## (For documentation only)
10:56:38# Suggestion for strategies as to the minimum memory
10:56:38# that they will use for calculating JVM settings (MB).
10:56:38omero.jvmcfg.min_system_memory=3414
10:56:3810:56:38## (For documentation only)
10:56:38# Suggestion for strategies as to the maximum memory
10:56:38# that they will use for calculating JVM settings (MB).
10:56:38omero.jvmcfg.max_system_memory=48000
10:56:3810:56:3810:56:38#############################################
10:56:38## Logging properties
10:56:38##
10:56:38## Note: changes to the default omero.logging values in
10:56:38## this file will *not* be reflected in OMERO.server
10:56:38## since they are defined in OMERO.py
10:56:38#############################################
10:56:3810:56:38## (For documentation only)
10:56:38# Relative server directory where the log files should be stored.
10:56:38omero.logging.directory=var/log/
10:56:3810:56:38## (For documentation only)
10:56:38# Whether the server log files should be rotated at a certain time
10:56:38# interval. If true, log files will be rolled over at midnight.
10:56:38# Otherwise, log files will be rolled over at a predetermined size,
10:56:38# see omero.logging.logsize for more information.
10:56:38omero.logging.timedlog=false
10:56:3810:56:38## (For documentation only)
10:56:38# If omero.logging.timedlog is false or unset, specifies the
10:56:38# maximum size of the server log files in bytes above which a
10:56:38# new log file should be created.
10:56:38omero.logging.logsize=5000000
10:56:3810:56:38## (For documentation only)
10:56:38# If omero.logging.timedlog is false or unset, specifies the
10:56:38# number of old server log files that should be kept. Old log
10:56:38# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
10:56:38omero.logging.lognum=9
10:56:3810:56:38## (For documentation only)
10:56:38# Specifies the threshold for the Python servers log files. Logging messages
10:56:38# which are less severe than this value will be ignored. For a list of
10:56:38# available values, see https://docs.python.org/3/library/logging.html#levels.
10:56:38omero.logging.level=20
10:56:3810:56:38#############################################
10:56:38## Ice overrides
10:56:38##
10:56:38## Though not used directly by OMERO, a number
10:56:38## of properties prefixed with "Ice.*" will
10:56:38## alter the behavior of the OMERO runtime
10:56:38## by configuring the Ice communicators. For a
10:56:38## full listing see:
10:56:38##
10:56:38## http://doc.zeroc.com/display/Ice/Property+Reference10:56:38## For more information see
10:56:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start10:56:38#############################################
10:56:3810:56:38# Disable IPv6 by setting to 0. Only needed in
10:56:38# certain situations.
10:56:38Ice.IPv6=1
10:56:3810:56:38# Glacier2Template IceSSL defaults and overrides,
10:56:38# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
10:56:38# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
10:56:38# update the corresponding IceSSL. property.
10:56:38omero.glacier2.IceSSL=
10:56:3810:56:38# Glacier2Template SSL maximum allowed protocol (mac bug)
10:56:38omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
10:56:38# Glacier2Template SSL allowed cipher suites
10:56:38omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
10:56:38# Glacier2Template SSL verification requirements
10:56:38omero.glacier2.IceSSL.VerifyPeer=0
10:56:38# Glacier2Template SSL allowed protocols
10:56:38omero.glacier2.IceSSL.Protocols=tls1
10:56:3810:56:38# Override the default set of OMERO services.
10:56:38# For example, to run OMERO.server with Blitz and Tables only
10:56:38# (i.e. disable Processor, DropBox, Indexer, PixelData)
10:56:38# set this to ``master:Blitz-0,Tables-0``.
10:56:38# Also use this to distribute OMERO services across multiple nodes,
10:56:38# for example:
10:56:38# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
10:56:38# See
10:56:38# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples10:56:38omero.server.nodedescriptors=
10:56:3810:56:38#############################################
10:56:38## Darwin (OS X) specific defaults for templated configuration files only.
10:56:38## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
10:56:38## file.
10:56:38## Do not set these properties in ``omero config``, instead set the original
10:56:38## ``xxx.yyy`` property
10:56:38#############################################
10:56:38_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
10:56:3810:56:38## (For documentation only)
10:56:38# Name of the Python module to use when starting the Tables service
10:56:38omero.tables.module=runTables
10:56:3810:56:38#############################################
10:56:38## Server product name for release artifacts
10:56:38#############################################
10:56:38product.name=OMERO.server
10:56:3810:56:38#############################################
10:56:38### Properties below this marker are ignored by
10:56:38### omero.install.config_parser.PropertyParser
10:56:38### END
10:56:3810:56:38#############################################
10:56:38## Library versions
10:56:38#############################################
10:56:38##
10:56:38versions.findbugs=1.2.1
10:56:38versions.ice36=3.6.5
10:56:38versions.ice36_lib=36
10:56:38## internal
10:56:38versions.omeroshares36=3.6.3
10:56:38versions.omeromock36=3.6.3
10:56:38versions.icedb36=3.6.3
10:56:38versions.ipython=1.2.1
10:56:3810:56:38versions.janino=2.5.10
10:56:3810:56:38versions.reportng=1.1.1
10:56:3810:56:38versions.testng=7.5
10:56:38versions.velocity=1.4
10:56:3810:56:38versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE10:56:38versions.omero-scripts-url=${versions.omero-pypi}
10:56:3810:56:38# hard coded, should not be picked up by scc for now!
10:56:38versions.omero-zarr-pixel-buffer=0.7.0-rc3
10:56:3810:56:38###
10:56:38### Appended Values
10:56:38###
10:56:3810:56:38## Internal dependencies'
10:56:38+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/10:56:38+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive10:56:38+ echo versions.scripts-prefix=
10:56:38+ echo versions.scripts=merge_ci
10:56:38+ cat /home/omero/workspace/OMERO-push/version.properties
10:56:38+ git commit -a -m 'Add version.properties to etc/omero.properties'
10:56:38[detached HEAD 767a2bdbcc] Add version.properties to etc/omero.properties
10:56:38 1 file changed, 46 insertions(+), 6 deletions(-)
10:56:38+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
10:56:42To github.com:snoopycrimecop/openmicroscopy.git
10:56:42 + b09f12376b...767a2bdbcc HEAD -> merge_ci (forced update)
10:56:42Finished: SUCCESS
