14:57:35Started by upstream project "Trigger" build number 8014:57:35originally caused by:
14:57:35 Started by user devspace14:57:35Running as SYSTEM
14:57:35Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
14:57:35The recommended git tool is: NONE
14:57:35No credentials specified
14:57:35 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
14:57:35Fetching changes from the remote Git repository
14:57:35 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
14:57:35Fetching upstream changes from https://github.com/ome/openmicroscopy.git14:57:35 > git --version # timeout=10
14:57:35 > git --version # 'git version 2.52.0'
14:57:35 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:57:38 > git rev-parse origin/develop^{commit} # timeout=10
14:57:38Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop)
14:57:38 > git config core.sparsecheckout # timeout=10
14:57:38 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30
14:57:43Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix"
14:57:43 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
14:57:43Cleaning workspace
14:57:43 > git rev-parse --verify HEAD # timeout=10
14:57:43Resetting working tree
14:57:43 > git reset --hard # timeout=10
14:57:43 > git clean -fdx # timeout=10
14:57:44Copied 1 artifact from "OMERO-python-superbuild-build" build number 5814:57:44[OMERO-push] $ /bin/bash -xe /tmp/jenkins9034264965360177132.sh
14:57:44+ python3.11 -mvenv venv
14:57:47+ source /home/omero/workspace/OMERO-push/venv/bin/activate
14:57:47++ deactivate nondestructive
14:57:47++ '[' -n '' ']'
14:57:47++ '[' -n '' ']'
14:57:47++ hash -r
14:57:47++ '[' -n '' ']'
14:57:47++ unset VIRTUAL_ENV
14:57:47++ unset VIRTUAL_ENV_PROMPT
14:57:47++ '[' '!' nondestructive = nondestructive ']'
14:57:47++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
14:57:47++ export VIRTUAL_ENV
14:57:47++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:57:47++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:57:47++ export PATH
14:57:47++ '[' -n '' ']'
14:57:47++ '[' -z '' ']'
14:57:47++ _OLD_VIRTUAL_PS1=
14:57:47++ PS1='(venv) '
14:57:47++ export PS1
14:57:47++ VIRTUAL_ENV_PROMPT='(venv) '
14:57:47++ export VIRTUAL_ENV_PROMPT
14:57:47++ hash -r
14:57:47+ pip install -U pip
14:57:51Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
14:57:51+ pip install -U scc
14:57:52Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
14:57:52Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
14:57:52Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
14:57:52Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
14:57:52Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
14:57:52Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
14:57:52Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
14:57:52Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
14:57:52Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
14:57:52Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
14:57:52Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
14:57:52Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
14:57:52Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
14:57:52Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
14:57:52Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
14:57:52Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
14:57:52Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
14:57:52Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
14:57:52Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
14:57:52+ test -e src
14:57:52+ cd src
14:57:52++ git config github.user
14:57:52+ user=snoopycrimecop
14:57:52+ scc merge develop --no-ask --reset --shallow -S success-only
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Merging Pull Request(s) based on develop
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
14:58:032026-08-31 14:58:03,324 [ scc.merge] INFO Excluding Pull Request(s) without successful status
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO Repository: ome/openmicroscopy
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO Excluded PRs:
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO Already up to date.
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO Merged PRs:
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
14:58:302026-08-31 14:58:30,075 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
14:58:302026-08-31 14:58:30,076 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
14:58:302026-08-31 14:58:30,076 [ scc.merge] INFO
14:58:30+ cp etc/omero.properties etc/omero.properties.bak
14:58:30+ rm etc/omero.properties
14:58:30+ touch etc/omero.properties
14:58:30++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
14:58:30+ ne=252
14:58:30++ sed -n 1,252p etc/omero.properties.bak
14:58:30+ line='##
14:58:30## omero.properties
14:58:30## ----------------
14:58:30##
14:58:30## DO NOT EDIT!
14:58:30##
14:58:30##
14:58:30## Any of these properties can be altered by using `omero config`. MODIFYING
14:58:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:58:30## at compile time!
14:58:30##
14:58:30## For an overview of these properties, see
14:58:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:58:30##
14:58:30## Properties marked with "DEVELOPMENT" should not be used in production.
14:58:3014:58:30# Comma separated list of Ice transports available to clients. The default
14:58:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:58:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:58:30# will prevent all non-encrypted connections to the OMERO server.
14:58:30#
14:58:30# Additionally, there are two experimental values for using websockets:
14:58:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:58:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:58:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:58:30#
14:58:30# Note: When using websockets behind a web server like nginx, additional
14:58:30# configuration may be needed.
14:58:30omero.client.icetransports=ssl,tcp
14:58:3014:58:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:58:30# server
14:58:30omero.ports.prefix=
14:58:3014:58:30# The Glacier2 SSL port number to use
14:58:30omero.ports.ssl=4064
14:58:3014:58:30# The Glacier2 TCP port number to use (unencrypted)
14:58:30omero.ports.tcp=4063
14:58:3014:58:30# The Glacier2 WSS port number to use
14:58:30omero.ports.wss=4066
14:58:3014:58:30# The Glacier2 WS port number to use (unencrypted)
14:58:30omero.ports.ws=4065
14:58:3014:58:30# The IceGrid registry port number to use
14:58:30omero.ports.registry=4061
14:58:3014:58:30#############################################
14:58:30## JVM configuration
14:58:30##
14:58:30## Note: changes to the omero.jvmcfg properties
14:58:30## will *not* be reflected in OMERO.server
14:58:30## since they are defined in OMERO.py.
14:58:30#############################################
14:58:30## (For documentation only)
14:58:30# Memory strategy which will be used by default.
14:58:30# Options include: percent, manual
14:58:30omero.jvmcfg.strategy=percent
14:58:3014:58:30## (For documentation only)
14:58:30# Explicit value for the `-Xmx` argument, e.g.
14:58:30# "1g"
14:58:30omero.jvmcfg.heap_size=
14:58:3014:58:30## (For documentation only)
14:58:30# Explicit value for the MaxPermSize argument
14:58:30# to the JVM, e.g. "500M". Ignored for Java8+
14:58:30omero.jvmcfg.perm_gen=
14:58:3014:58:30## (For documentation only)
14:58:30# Toggles on or off heap dumps on OOMs. Default is "off".
14:58:30# The special value "tmp" will create the heap dumps in
14:58:30# your temp directory.
14:58:30omero.jvmcfg.heap_dump=
14:58:3014:58:30## (For documentation only)
14:58:30# Used only by the percent strategy. An integer between 0
14:58:30# and 100 which is the percent of active memory that will
14:58:30# be used by the service.
14:58:30omero.jvmcfg.percent=
14:58:3014:58:30## (For documentation only)
14:58:30# Contains other parameters which should be passed to the
14:58:30# JVM. The value of "append" is treated as if it were on
14:58:30# the command line so will be separated on whitespace.
14:58:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:58:30# results in two new arguments.
14:58:30# Note that when using `config set` from the command line
14:58:30# one may need to give a prior `--` option to prevent a value
14:58:30# starting with `-` from already being parsed as an option,
14:58:30# and values may need quoting to prevent whitespace or other
14:58:30# significant characters from being interpreted prematurely.
14:58:3014:58:30omero.jvmcfg.append=
14:58:3014:58:30## (For documentation only)
14:58:30# Manual override of the total system memory that
14:58:30# OMERO will *think* is present on the local OS (MB).
14:58:30# If unset, an attempt will be made to detect the actual
14:58:30# amount: first by using the Python library `psutil` and
14:58:30# if that is not installed, by running a Java tool. If
14:58:30# neither works, 4.0GB is assumed.
14:58:30omero.jvmcfg.system_memory=
14:58:3014:58:30## (For documentation only)
14:58:30# Suggestion for strategies as to the minimum memory
14:58:30# that they will use for calculating JVM settings (MB).
14:58:30omero.jvmcfg.min_system_memory=3414
14:58:3014:58:30## (For documentation only)
14:58:30# Suggestion for strategies as to the maximum memory
14:58:30# that they will use for calculating JVM settings (MB).
14:58:30omero.jvmcfg.max_system_memory=48000
14:58:3014:58:3014:58:30#############################################
14:58:30## Logging properties
14:58:30##
14:58:30## Note: changes to the default omero.logging values in
14:58:30## this file will *not* be reflected in OMERO.server
14:58:30## since they are defined in OMERO.py
14:58:30#############################################
14:58:3014:58:30## (For documentation only)
14:58:30# Relative server directory where the log files should be stored.
14:58:30omero.logging.directory=var/log/
14:58:3014:58:30## (For documentation only)
14:58:30# Whether the server log files should be rotated at a certain time
14:58:30# interval. If true, log files will be rolled over at midnight.
14:58:30# Otherwise, log files will be rolled over at a predetermined size,
14:58:30# see omero.logging.logsize for more information.
14:58:30omero.logging.timedlog=false
14:58:3014:58:30## (For documentation only)
14:58:30# If omero.logging.timedlog is false or unset, specifies the
14:58:30# maximum size of the server log files in bytes above which a
14:58:30# new log file should be created.
14:58:30omero.logging.logsize=5000000
14:58:3014:58:30## (For documentation only)
14:58:30# If omero.logging.timedlog is false or unset, specifies the
14:58:30# number of old server log files that should be kept. Old log
14:58:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:58:30omero.logging.lognum=9
14:58:3014:58:30## (For documentation only)
14:58:30# Specifies the threshold for the Python servers log files. Logging messages
14:58:30# which are less severe than this value will be ignored. For a list of
14:58:30# available values, see https://docs.python.org/3/library/logging.html#levels.
14:58:30omero.logging.level=20
14:58:3014:58:30#############################################
14:58:30## Ice overrides
14:58:30##
14:58:30## Though not used directly by OMERO, a number
14:58:30## of properties prefixed with "Ice.*" will
14:58:30## alter the behavior of the OMERO runtime
14:58:30## by configuring the Ice communicators. For a
14:58:30## full listing see:
14:58:30##
14:58:30## http://doc.zeroc.com/display/Ice/Property+Reference14:58:30## For more information see
14:58:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:58:30#############################################
14:58:3014:58:30# Disable IPv6 by setting to 0. Only needed in
14:58:30# certain situations.
14:58:30Ice.IPv6=1
14:58:3014:58:30# Glacier2Template IceSSL defaults and overrides,
14:58:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:58:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:58:30# update the corresponding IceSSL. property.
14:58:30omero.glacier2.IceSSL=
14:58:3014:58:30# Glacier2Template SSL maximum allowed protocol (mac bug)
14:58:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:58:30# Glacier2Template SSL allowed cipher suites
14:58:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:58:30# Glacier2Template SSL verification requirements
14:58:30omero.glacier2.IceSSL.VerifyPeer=0
14:58:30# Glacier2Template SSL allowed protocols
14:58:30omero.glacier2.IceSSL.Protocols=tls1
14:58:3014:58:30# Override the default set of OMERO services.
14:58:30# For example, to run OMERO.server with Blitz and Tables only
14:58:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:58:30# set this to ``master:Blitz-0,Tables-0``.
14:58:30# Also use this to distribute OMERO services across multiple nodes,
14:58:30# for example:
14:58:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:58:30# See
14:58:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:58:30omero.server.nodedescriptors=
14:58:3014:58:30#############################################
14:58:30## Darwin (OS X) specific defaults for templated configuration files only.
14:58:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:58:30## file.
14:58:30## Do not set these properties in ``omero config``, instead set the original
14:58:30## ``xxx.yyy`` property
14:58:30#############################################
14:58:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:58:3014:58:30## (For documentation only)
14:58:30# Name of the Python module to use when starting the Tables service
14:58:30omero.tables.module=runTables
14:58:3014:58:30#############################################
14:58:30## Server product name for release artifacts
14:58:30#############################################
14:58:30product.name=OMERO.server
14:58:3014:58:30#############################################
14:58:30### Properties below this marker are ignored by
14:58:30### omero.install.config_parser.PropertyParser
14:58:30### END
14:58:3014:58:30#############################################
14:58:30## Library versions
14:58:30#############################################
14:58:30##
14:58:30versions.findbugs=1.2.1
14:58:30versions.ice36=3.6.5
14:58:30versions.ice36_lib=36
14:58:30## internal
14:58:30versions.omeroshares36=3.6.3
14:58:30versions.omeromock36=3.6.3
14:58:30versions.icedb36=3.6.3
14:58:30versions.ipython=1.2.1
14:58:3014:58:30versions.janino=2.5.10
14:58:3014:58:30versions.reportng=1.1.1
14:58:3014:58:30versions.testng=7.5
14:58:30versions.velocity=1.4
14:58:3014:58:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:58:30versions.omero-scripts-url=${versions.omero-pypi}
14:58:3014:58:30# hard coded, should not be picked up by scc for now!
14:58:30versions.omero-zarr-pixel-buffer=0.7.0-rc3
14:58:3014:58:30###
14:58:30### Appended Values
14:58:30###
14:58:3014:58:30## Internal dependencies'
14:58:30+ echo '##
14:58:30## omero.properties
14:58:30## ----------------
14:58:30##
14:58:30## DO NOT EDIT!
14:58:30##
14:58:30##
14:58:30## Any of these properties can be altered by using `omero config`. MODIFYING
14:58:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:58:30## at compile time!
14:58:30##
14:58:30## For an overview of these properties, see
14:58:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:58:30##
14:58:30## Properties marked with "DEVELOPMENT" should not be used in production.
14:58:3014:58:30# Comma separated list of Ice transports available to clients. The default
14:58:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:58:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:58:30# will prevent all non-encrypted connections to the OMERO server.
14:58:30#
14:58:30# Additionally, there are two experimental values for using websockets:
14:58:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:58:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:58:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:58:30#
14:58:30# Note: When using websockets behind a web server like nginx, additional
14:58:30# configuration may be needed.
14:58:30omero.client.icetransports=ssl,tcp
14:58:3014:58:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:58:30# server
14:58:30omero.ports.prefix=
14:58:3014:58:30# The Glacier2 SSL port number to use
14:58:30omero.ports.ssl=4064
14:58:3014:58:30# The Glacier2 TCP port number to use (unencrypted)
14:58:30omero.ports.tcp=4063
14:58:3014:58:30# The Glacier2 WSS port number to use
14:58:30omero.ports.wss=4066
14:58:3014:58:30# The Glacier2 WS port number to use (unencrypted)
14:58:30omero.ports.ws=4065
14:58:3014:58:30# The IceGrid registry port number to use
14:58:30omero.ports.registry=4061
14:58:3014:58:30#############################################
14:58:30## JVM configuration
14:58:30##
14:58:30## Note: changes to the omero.jvmcfg properties
14:58:30## will *not* be reflected in OMERO.server
14:58:30## since they are defined in OMERO.py.
14:58:30#############################################
14:58:30## (For documentation only)
14:58:30# Memory strategy which will be used by default.
14:58:30# Options include: percent, manual
14:58:30omero.jvmcfg.strategy=percent
14:58:3014:58:30## (For documentation only)
14:58:30# Explicit value for the `-Xmx` argument, e.g.
14:58:30# "1g"
14:58:30omero.jvmcfg.heap_size=
14:58:3014:58:30## (For documentation only)
14:58:30# Explicit value for the MaxPermSize argument
14:58:30# to the JVM, e.g. "500M". Ignored for Java8+
14:58:30omero.jvmcfg.perm_gen=
14:58:3014:58:30## (For documentation only)
14:58:30# Toggles on or off heap dumps on OOMs. Default is "off".
14:58:30# The special value "tmp" will create the heap dumps in
14:58:30# your temp directory.
14:58:30omero.jvmcfg.heap_dump=
14:58:3014:58:30## (For documentation only)
14:58:30# Used only by the percent strategy. An integer between 0
14:58:30# and 100 which is the percent of active memory that will
14:58:30# be used by the service.
14:58:30omero.jvmcfg.percent=
14:58:3014:58:30## (For documentation only)
14:58:30# Contains other parameters which should be passed to the
14:58:30# JVM. The value of "append" is treated as if it were on
14:58:30# the command line so will be separated on whitespace.
14:58:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:58:30# results in two new arguments.
14:58:30# Note that when using `config set` from the command line
14:58:30# one may need to give a prior `--` option to prevent a value
14:58:30# starting with `-` from already being parsed as an option,
14:58:30# and values may need quoting to prevent whitespace or other
14:58:30# significant characters from being interpreted prematurely.
14:58:3014:58:30omero.jvmcfg.append=
14:58:3014:58:30## (For documentation only)
14:58:30# Manual override of the total system memory that
14:58:30# OMERO will *think* is present on the local OS (MB).
14:58:30# If unset, an attempt will be made to detect the actual
14:58:30# amount: first by using the Python library `psutil` and
14:58:30# if that is not installed, by running a Java tool. If
14:58:30# neither works, 4.0GB is assumed.
14:58:30omero.jvmcfg.system_memory=
14:58:3014:58:30## (For documentation only)
14:58:30# Suggestion for strategies as to the minimum memory
14:58:30# that they will use for calculating JVM settings (MB).
14:58:30omero.jvmcfg.min_system_memory=3414
14:58:3014:58:30## (For documentation only)
14:58:30# Suggestion for strategies as to the maximum memory
14:58:30# that they will use for calculating JVM settings (MB).
14:58:30omero.jvmcfg.max_system_memory=48000
14:58:3014:58:3014:58:30#############################################
14:58:30## Logging properties
14:58:30##
14:58:30## Note: changes to the default omero.logging values in
14:58:30## this file will *not* be reflected in OMERO.server
14:58:30## since they are defined in OMERO.py
14:58:30#############################################
14:58:3014:58:30## (For documentation only)
14:58:30# Relative server directory where the log files should be stored.
14:58:30omero.logging.directory=var/log/
14:58:3014:58:30## (For documentation only)
14:58:30# Whether the server log files should be rotated at a certain time
14:58:30# interval. If true, log files will be rolled over at midnight.
14:58:30# Otherwise, log files will be rolled over at a predetermined size,
14:58:30# see omero.logging.logsize for more information.
14:58:30omero.logging.timedlog=false
14:58:3014:58:30## (For documentation only)
14:58:30# If omero.logging.timedlog is false or unset, specifies the
14:58:30# maximum size of the server log files in bytes above which a
14:58:30# new log file should be created.
14:58:30omero.logging.logsize=5000000
14:58:3014:58:30## (For documentation only)
14:58:30# If omero.logging.timedlog is false or unset, specifies the
14:58:30# number of old server log files that should be kept. Old log
14:58:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:58:30omero.logging.lognum=9
14:58:3014:58:30## (For documentation only)
14:58:30# Specifies the threshold for the Python servers log files. Logging messages
14:58:30# which are less severe than this value will be ignored. For a list of
14:58:30# available values, see https://docs.python.org/3/library/logging.html#levels.
14:58:30omero.logging.level=20
14:58:3014:58:30#############################################
14:58:30## Ice overrides
14:58:30##
14:58:30## Though not used directly by OMERO, a number
14:58:30## of properties prefixed with "Ice.*" will
14:58:30## alter the behavior of the OMERO runtime
14:58:30## by configuring the Ice communicators. For a
14:58:30## full listing see:
14:58:30##
14:58:30## http://doc.zeroc.com/display/Ice/Property+Reference14:58:30## For more information see
14:58:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:58:30#############################################
14:58:3014:58:30# Disable IPv6 by setting to 0. Only needed in
14:58:30# certain situations.
14:58:30Ice.IPv6=1
14:58:3014:58:30# Glacier2Template IceSSL defaults and overrides,
14:58:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:58:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:58:30# update the corresponding IceSSL. property.
14:58:30omero.glacier2.IceSSL=
14:58:3014:58:30# Glacier2Template SSL maximum allowed protocol (mac bug)
14:58:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:58:30# Glacier2Template SSL allowed cipher suites
14:58:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:58:30# Glacier2Template SSL verification requirements
14:58:30omero.glacier2.IceSSL.VerifyPeer=0
14:58:30# Glacier2Template SSL allowed protocols
14:58:30omero.glacier2.IceSSL.Protocols=tls1
14:58:3014:58:30# Override the default set of OMERO services.
14:58:30# For example, to run OMERO.server with Blitz and Tables only
14:58:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:58:30# set this to ``master:Blitz-0,Tables-0``.
14:58:30# Also use this to distribute OMERO services across multiple nodes,
14:58:30# for example:
14:58:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:58:30# See
14:58:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:58:30omero.server.nodedescriptors=
14:58:3014:58:30#############################################
14:58:30## Darwin (OS X) specific defaults for templated configuration files only.
14:58:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:58:30## file.
14:58:30## Do not set these properties in ``omero config``, instead set the original
14:58:30## ``xxx.yyy`` property
14:58:30#############################################
14:58:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:58:3014:58:30## (For documentation only)
14:58:30# Name of the Python module to use when starting the Tables service
14:58:30omero.tables.module=runTables
14:58:3014:58:30#############################################
14:58:30## Server product name for release artifacts
14:58:30#############################################
14:58:30product.name=OMERO.server
14:58:3014:58:30#############################################
14:58:30### Properties below this marker are ignored by
14:58:30### omero.install.config_parser.PropertyParser
14:58:30### END
14:58:3014:58:30#############################################
14:58:30## Library versions
14:58:30#############################################
14:58:30##
14:58:30versions.findbugs=1.2.1
14:58:30versions.ice36=3.6.5
14:58:30versions.ice36_lib=36
14:58:30## internal
14:58:30versions.omeroshares36=3.6.3
14:58:30versions.omeromock36=3.6.3
14:58:30versions.icedb36=3.6.3
14:58:30versions.ipython=1.2.1
14:58:3014:58:30versions.janino=2.5.10
14:58:3014:58:30versions.reportng=1.1.1
14:58:3014:58:30versions.testng=7.5
14:58:30versions.velocity=1.4
14:58:3014:58:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:58:30versions.omero-scripts-url=${versions.omero-pypi}
14:58:3014:58:30# hard coded, should not be picked up by scc for now!
14:58:30versions.omero-zarr-pixel-buffer=0.7.0-rc3
14:58:3014:58:30###
14:58:30### Appended Values
14:58:30###
14:58:3014:58:30## Internal dependencies'
14:58:30+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/14:58:30+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive14:58:30+ echo versions.scripts-prefix=
14:58:30+ echo versions.scripts=merge_ci
14:58:30+ cat /home/omero/workspace/OMERO-push/version.properties
14:58:30+ git commit -a -m 'Add version.properties to etc/omero.properties'
14:58:30[detached HEAD 444e77120c] Add version.properties to etc/omero.properties
14:58:30 1 file changed, 46 insertions(+), 6 deletions(-)
14:58:30+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
14:58:34To github.com:snoopycrimecop/openmicroscopy.git
14:58:34 + ccb6da4c02...444e77120c HEAD -> merge_ci (forced update)
14:58:34Finished: SUCCESS
