23:33:21Started by upstream project "Trigger" build number 9323:33:21originally caused by:
23:33:21 Started by timer
23:33:21Running as SYSTEM
23:33:21Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
23:33:21The recommended git tool is: NONE
23:33:21No credentials specified
23:33:21 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
23:33:21Fetching changes from the remote Git repository
23:33:21 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
23:33:21Fetching upstream changes from https://github.com/ome/openmicroscopy.git23:33:21 > git --version # timeout=10
23:33:21 > git --version # 'git version 2.52.0'
23:33:21 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:33:27 > git rev-parse origin/develop^{commit} # timeout=10
23:33:27Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop)
23:33:27 > git config core.sparsecheckout # timeout=10
23:33:27 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30
23:33:32Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix"
23:33:32 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
23:33:32Cleaning workspace
23:33:32 > git rev-parse --verify HEAD # timeout=10
23:33:32Resetting working tree
23:33:32 > git reset --hard # timeout=10
23:33:32 > git clean -fdx # timeout=10
23:33:33Copied 1 artifact from "OMERO-python-superbuild-build" build number 6623:33:33[OMERO-push] $ /bin/bash -xe /tmp/jenkins12201387974897793067.sh
23:33:33+ python3.11 -mvenv venv
23:33:37+ source /home/omero/workspace/OMERO-push/venv/bin/activate
23:33:37++ deactivate nondestructive
23:33:37++ '[' -n '' ']'
23:33:37++ '[' -n '' ']'
23:33:37++ hash -r
23:33:37++ '[' -n '' ']'
23:33:37++ unset VIRTUAL_ENV
23:33:37++ unset VIRTUAL_ENV_PROMPT
23:33:37++ '[' '!' nondestructive = nondestructive ']'
23:33:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
23:33:37++ export VIRTUAL_ENV
23:33:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:33:37++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:33:37++ export PATH
23:33:37++ '[' -n '' ']'
23:33:37++ '[' -z '' ']'
23:33:37++ _OLD_VIRTUAL_PS1=
23:33:37++ PS1='(venv) '
23:33:37++ export PS1
23:33:37++ VIRTUAL_ENV_PROMPT='(venv) '
23:33:37++ export VIRTUAL_ENV_PROMPT
23:33:37++ hash -r
23:33:37+ pip install -U pip
23:33:42Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
23:33:43+ pip install -U scc
23:33:44Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
23:33:44Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
23:33:44Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
23:33:44Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
23:33:44Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
23:33:44Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
23:33:44Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
23:33:44Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
23:33:44Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
23:33:44Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
23:33:44Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
23:33:44Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
23:33:44Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
23:33:44Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
23:33:44Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
23:33:44Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
23:33:44Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
23:33:44Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
23:33:44Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
23:33:45+ test -e src
23:33:45+ cd src
23:33:45++ git config github.user
23:33:45+ user=snoopycrimecop
23:33:45+ scc merge develop --no-ask --reset --shallow -S success-only
23:33:552026-09-11 23:33:55,514 [ scc.merge] INFO Merging Pull Request(s) based on develop
23:33:552026-09-11 23:33:55,514 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
23:33:552026-09-11 23:33:55,514 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
23:33:552026-09-11 23:33:55,514 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
23:33:552026-09-11 23:33:55,515 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
23:33:552026-09-11 23:33:55,515 [ scc.merge] INFO Excluding Pull Request(s) without successful status
23:34:222026-09-11 23:34:22,337 [ scc.merge] INFO Repository: ome/openmicroscopy
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO Excluded PRs:
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO Already up to date.
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO Merged PRs:
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
23:34:222026-09-11 23:34:22,338 [ scc.merge] INFO
23:34:22+ cp etc/omero.properties etc/omero.properties.bak
23:34:22+ rm etc/omero.properties
23:34:22+ touch etc/omero.properties
23:34:22++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
23:34:22+ ne=252
23:34:22++ sed -n 1,252p etc/omero.properties.bak
23:34:22+ line='##
23:34:22## omero.properties
23:34:22## ----------------
23:34:22##
23:34:22## DO NOT EDIT!
23:34:22##
23:34:22##
23:34:22## Any of these properties can be altered by using `omero config`. MODIFYING
23:34:22## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:34:22## at compile time!
23:34:22##
23:34:22## For an overview of these properties, see
23:34:22## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:34:22##
23:34:22## Properties marked with "DEVELOPMENT" should not be used in production.
23:34:2223:34:22# Comma separated list of Ice transports available to clients. The default
23:34:22# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:34:22# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:34:22# will prevent all non-encrypted connections to the OMERO server.
23:34:22#
23:34:22# Additionally, there are two experimental values for using websockets:
23:34:22# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:34:22# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:34:22# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:34:22#
23:34:22# Note: When using websockets behind a web server like nginx, additional
23:34:22# configuration may be needed.
23:34:22omero.client.icetransports=ssl,tcp
23:34:2223:34:22# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:34:22# server
23:34:22omero.ports.prefix=
23:34:2223:34:22# The Glacier2 SSL port number to use
23:34:22omero.ports.ssl=4064
23:34:2223:34:22# The Glacier2 TCP port number to use (unencrypted)
23:34:22omero.ports.tcp=4063
23:34:2223:34:22# The Glacier2 WSS port number to use
23:34:22omero.ports.wss=4066
23:34:2223:34:22# The Glacier2 WS port number to use (unencrypted)
23:34:22omero.ports.ws=4065
23:34:2223:34:22# The IceGrid registry port number to use
23:34:22omero.ports.registry=4061
23:34:2223:34:22#############################################
23:34:22## JVM configuration
23:34:22##
23:34:22## Note: changes to the omero.jvmcfg properties
23:34:22## will *not* be reflected in OMERO.server
23:34:22## since they are defined in OMERO.py.
23:34:22#############################################
23:34:22## (For documentation only)
23:34:22# Memory strategy which will be used by default.
23:34:22# Options include: percent, manual
23:34:22omero.jvmcfg.strategy=percent
23:34:2223:34:22## (For documentation only)
23:34:22# Explicit value for the `-Xmx` argument, e.g.
23:34:22# "1g"
23:34:22omero.jvmcfg.heap_size=
23:34:2223:34:22## (For documentation only)
23:34:22# Explicit value for the MaxPermSize argument
23:34:22# to the JVM, e.g. "500M". Ignored for Java8+
23:34:22omero.jvmcfg.perm_gen=
23:34:2223:34:22## (For documentation only)
23:34:22# Toggles on or off heap dumps on OOMs. Default is "off".
23:34:22# The special value "tmp" will create the heap dumps in
23:34:22# your temp directory.
23:34:22omero.jvmcfg.heap_dump=
23:34:2223:34:22## (For documentation only)
23:34:22# Used only by the percent strategy. An integer between 0
23:34:22# and 100 which is the percent of active memory that will
23:34:22# be used by the service.
23:34:22omero.jvmcfg.percent=
23:34:2223:34:22## (For documentation only)
23:34:22# Contains other parameters which should be passed to the
23:34:22# JVM. The value of "append" is treated as if it were on
23:34:22# the command line so will be separated on whitespace.
23:34:22# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:34:22# results in two new arguments.
23:34:22# Note that when using `config set` from the command line
23:34:22# one may need to give a prior `--` option to prevent a value
23:34:22# starting with `-` from already being parsed as an option,
23:34:22# and values may need quoting to prevent whitespace or other
23:34:22# significant characters from being interpreted prematurely.
23:34:2223:34:22omero.jvmcfg.append=
23:34:2223:34:22## (For documentation only)
23:34:22# Manual override of the total system memory that
23:34:22# OMERO will *think* is present on the local OS (MB).
23:34:22# If unset, an attempt will be made to detect the actual
23:34:22# amount: first by using the Python library `psutil` and
23:34:22# if that is not installed, by running a Java tool. If
23:34:22# neither works, 4.0GB is assumed.
23:34:22omero.jvmcfg.system_memory=
23:34:2223:34:22## (For documentation only)
23:34:22# Suggestion for strategies as to the minimum memory
23:34:22# that they will use for calculating JVM settings (MB).
23:34:22omero.jvmcfg.min_system_memory=3414
23:34:2223:34:22## (For documentation only)
23:34:22# Suggestion for strategies as to the maximum memory
23:34:22# that they will use for calculating JVM settings (MB).
23:34:22omero.jvmcfg.max_system_memory=48000
23:34:2223:34:2223:34:22#############################################
23:34:22## Logging properties
23:34:22##
23:34:22## Note: changes to the default omero.logging values in
23:34:22## this file will *not* be reflected in OMERO.server
23:34:22## since they are defined in OMERO.py
23:34:22#############################################
23:34:2223:34:22## (For documentation only)
23:34:22# Relative server directory where the log files should be stored.
23:34:22omero.logging.directory=var/log/
23:34:2223:34:22## (For documentation only)
23:34:22# Whether the server log files should be rotated at a certain time
23:34:22# interval. If true, log files will be rolled over at midnight.
23:34:22# Otherwise, log files will be rolled over at a predetermined size,
23:34:22# see omero.logging.logsize for more information.
23:34:22omero.logging.timedlog=false
23:34:2223:34:22## (For documentation only)
23:34:22# If omero.logging.timedlog is false or unset, specifies the
23:34:22# maximum size of the server log files in bytes above which a
23:34:22# new log file should be created.
23:34:22omero.logging.logsize=5000000
23:34:2223:34:22## (For documentation only)
23:34:22# If omero.logging.timedlog is false or unset, specifies the
23:34:22# number of old server log files that should be kept. Old log
23:34:22# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:34:22omero.logging.lognum=9
23:34:2223:34:22## (For documentation only)
23:34:22# Specifies the threshold for the Python servers log files. Logging messages
23:34:22# which are less severe than this value will be ignored. For a list of
23:34:22# available values, see https://docs.python.org/3/library/logging.html#levels.
23:34:22omero.logging.level=20
23:34:2223:34:22#############################################
23:34:22## Ice overrides
23:34:22##
23:34:22## Though not used directly by OMERO, a number
23:34:22## of properties prefixed with "Ice.*" will
23:34:22## alter the behavior of the OMERO runtime
23:34:22## by configuring the Ice communicators. For a
23:34:22## full listing see:
23:34:22##
23:34:22## http://doc.zeroc.com/display/Ice/Property+Reference23:34:22## For more information see
23:34:22## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:34:22#############################################
23:34:2223:34:22# Disable IPv6 by setting to 0. Only needed in
23:34:22# certain situations.
23:34:22Ice.IPv6=1
23:34:2223:34:22# Glacier2Template IceSSL defaults and overrides,
23:34:22# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
23:34:22# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:34:22# update the corresponding IceSSL. property.
23:34:22omero.glacier2.IceSSL=
23:34:2223:34:22# Glacier2Template SSL maximum allowed protocol (mac bug)
23:34:22omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:34:22# Glacier2Template SSL allowed cipher suites
23:34:22omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:34:22# Glacier2Template SSL verification requirements
23:34:22omero.glacier2.IceSSL.VerifyPeer=0
23:34:22# Glacier2Template SSL allowed protocols
23:34:22omero.glacier2.IceSSL.Protocols=tls1
23:34:2223:34:22# Override the default set of OMERO services.
23:34:22# For example, to run OMERO.server with Blitz and Tables only
23:34:22# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:34:22# set this to ``master:Blitz-0,Tables-0``.
23:34:22# Also use this to distribute OMERO services across multiple nodes,
23:34:22# for example:
23:34:22# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:34:22# See
23:34:22# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:34:22omero.server.nodedescriptors=
23:34:2223:34:22#############################################
23:34:22## Darwin (OS X) specific defaults for templated configuration files only.
23:34:22## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:34:22## file.
23:34:22## Do not set these properties in ``omero config``, instead set the original
23:34:22## ``xxx.yyy`` property
23:34:22#############################################
23:34:22_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:34:2223:34:22## (For documentation only)
23:34:22# Name of the Python module to use when starting the Tables service
23:34:22omero.tables.module=runTables
23:34:2223:34:22#############################################
23:34:22## Server product name for release artifacts
23:34:22#############################################
23:34:22product.name=OMERO.server
23:34:2223:34:22#############################################
23:34:22### Properties below this marker are ignored by
23:34:22### omero.install.config_parser.PropertyParser
23:34:22### END
23:34:2223:34:22#############################################
23:34:22## Library versions
23:34:22#############################################
23:34:22##
23:34:22versions.findbugs=1.2.1
23:34:22versions.ice36=3.6.5
23:34:22versions.ice36_lib=36
23:34:22## internal
23:34:22versions.omeroshares36=3.6.3
23:34:22versions.omeromock36=3.6.3
23:34:22versions.icedb36=3.6.3
23:34:22versions.ipython=1.2.1
23:34:2223:34:22versions.janino=2.5.10
23:34:2223:34:22versions.reportng=1.1.1
23:34:2223:34:22versions.testng=7.5
23:34:22versions.velocity=1.4
23:34:2223:34:22versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:34:22versions.omero-scripts-url=${versions.omero-pypi}
23:34:2223:34:22# hard coded, should not be picked up by scc for now!
23:34:22versions.omero-zarr-pixel-buffer=0.7.0-rc3
23:34:2223:34:22###
23:34:22### Appended Values
23:34:22###
23:34:2223:34:22## Internal dependencies'
23:34:22+ echo '##
23:34:22## omero.properties
23:34:22## ----------------
23:34:22##
23:34:22## DO NOT EDIT!
23:34:22##
23:34:22##
23:34:22## Any of these properties can be altered by using `omero config`. MODIFYING
23:34:22## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:34:22## at compile time!
23:34:22##
23:34:22## For an overview of these properties, see
23:34:22## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:34:22##
23:34:22## Properties marked with "DEVELOPMENT" should not be used in production.
23:34:2223:34:22# Comma separated list of Ice transports available to clients. The default
23:34:22# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:34:22# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:34:22# will prevent all non-encrypted connections to the OMERO server.
23:34:22#
23:34:22# Additionally, there are two experimental values for using websockets:
23:34:22# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:34:22# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:34:22# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:34:22#
23:34:22# Note: When using websockets behind a web server like nginx, additional
23:34:22# configuration may be needed.
23:34:22omero.client.icetransports=ssl,tcp
23:34:2223:34:22# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:34:22# server
23:34:22omero.ports.prefix=
23:34:2223:34:22# The Glacier2 SSL port number to use
23:34:22omero.ports.ssl=4064
23:34:2223:34:22# The Glacier2 TCP port number to use (unencrypted)
23:34:22omero.ports.tcp=4063
23:34:2223:34:22# The Glacier2 WSS port number to use
23:34:22omero.ports.wss=4066
23:34:2223:34:22# The Glacier2 WS port number to use (unencrypted)
23:34:22omero.ports.ws=4065
23:34:2223:34:22# The IceGrid registry port number to use
23:34:22omero.ports.registry=4061
23:34:2223:34:22#############################################
23:34:22## JVM configuration
23:34:22##
23:34:22## Note: changes to the omero.jvmcfg properties
23:34:22## will *not* be reflected in OMERO.server
23:34:22## since they are defined in OMERO.py.
23:34:22#############################################
23:34:22## (For documentation only)
23:34:22# Memory strategy which will be used by default.
23:34:22# Options include: percent, manual
23:34:22omero.jvmcfg.strategy=percent
23:34:2223:34:22## (For documentation only)
23:34:22# Explicit value for the `-Xmx` argument, e.g.
23:34:22# "1g"
23:34:22omero.jvmcfg.heap_size=
23:34:2223:34:22## (For documentation only)
23:34:22# Explicit value for the MaxPermSize argument
23:34:22# to the JVM, e.g. "500M". Ignored for Java8+
23:34:22omero.jvmcfg.perm_gen=
23:34:2223:34:22## (For documentation only)
23:34:22# Toggles on or off heap dumps on OOMs. Default is "off".
23:34:22# The special value "tmp" will create the heap dumps in
23:34:22# your temp directory.
23:34:22omero.jvmcfg.heap_dump=
23:34:2223:34:22## (For documentation only)
23:34:22# Used only by the percent strategy. An integer between 0
23:34:22# and 100 which is the percent of active memory that will
23:34:22# be used by the service.
23:34:22omero.jvmcfg.percent=
23:34:2223:34:22## (For documentation only)
23:34:22# Contains other parameters which should be passed to the
23:34:22# JVM. The value of "append" is treated as if it were on
23:34:22# the command line so will be separated on whitespace.
23:34:22# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:34:22# results in two new arguments.
23:34:22# Note that when using `config set` from the command line
23:34:22# one may need to give a prior `--` option to prevent a value
23:34:22# starting with `-` from already being parsed as an option,
23:34:22# and values may need quoting to prevent whitespace or other
23:34:22# significant characters from being interpreted prematurely.
23:34:2223:34:22omero.jvmcfg.append=
23:34:2223:34:22## (For documentation only)
23:34:22# Manual override of the total system memory that
23:34:22# OMERO will *think* is present on the local OS (MB).
23:34:22# If unset, an attempt will be made to detect the actual
23:34:22# amount: first by using the Python library `psutil` and
23:34:22# if that is not installed, by running a Java tool. If
23:34:22# neither works, 4.0GB is assumed.
23:34:22omero.jvmcfg.system_memory=
23:34:2223:34:22## (For documentation only)
23:34:22# Suggestion for strategies as to the minimum memory
23:34:22# that they will use for calculating JVM settings (MB).
23:34:22omero.jvmcfg.min_system_memory=3414
23:34:2223:34:22## (For documentation only)
23:34:22# Suggestion for strategies as to the maximum memory
23:34:22# that they will use for calculating JVM settings (MB).
23:34:22omero.jvmcfg.max_system_memory=48000
23:34:2223:34:2223:34:22#############################################
23:34:22## Logging properties
23:34:22##
23:34:22## Note: changes to the default omero.logging values in
23:34:22## this file will *not* be reflected in OMERO.server
23:34:22## since they are defined in OMERO.py
23:34:22#############################################
23:34:2223:34:22## (For documentation only)
23:34:22# Relative server directory where the log files should be stored.
23:34:22omero.logging.directory=var/log/
23:34:2223:34:22## (For documentation only)
23:34:22# Whether the server log files should be rotated at a certain time
23:34:22# interval. If true, log files will be rolled over at midnight.
23:34:22# Otherwise, log files will be rolled over at a predetermined size,
23:34:22# see omero.logging.logsize for more information.
23:34:22omero.logging.timedlog=false
23:34:2223:34:22## (For documentation only)
23:34:22# If omero.logging.timedlog is false or unset, specifies the
23:34:22# maximum size of the server log files in bytes above which a
23:34:22# new log file should be created.
23:34:22omero.logging.logsize=5000000
23:34:2223:34:22## (For documentation only)
23:34:22# If omero.logging.timedlog is false or unset, specifies the
23:34:22# number of old server log files that should be kept. Old log
23:34:22# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:34:22omero.logging.lognum=9
23:34:2223:34:22## (For documentation only)
23:34:22# Specifies the threshold for the Python servers log files. Logging messages
23:34:22# which are less severe than this value will be ignored. For a list of
23:34:22# available values, see https://docs.python.org/3/library/logging.html#levels.
23:34:22omero.logging.level=20
23:34:2223:34:22#############################################
23:34:22## Ice overrides
23:34:22##
23:34:22## Though not used directly by OMERO, a number
23:34:22## of properties prefixed with "Ice.*" will
23:34:22## alter the behavior of the OMERO runtime
23:34:22## by configuring the Ice communicators. For a
23:34:22## full listing see:
23:34:22##
23:34:22## http://doc.zeroc.com/display/Ice/Property+Reference23:34:22## For more information see
23:34:22## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:34:22#############################################
23:34:2223:34:22# Disable IPv6 by setting to 0. Only needed in
23:34:22# certain situations.
23:34:22Ice.IPv6=1
23:34:2223:34:22# Glacier2Template IceSSL defaults and overrides,
23:34:22# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
23:34:22# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:34:22# update the corresponding IceSSL. property.
23:34:22omero.glacier2.IceSSL=
23:34:2223:34:22# Glacier2Template SSL maximum allowed protocol (mac bug)
23:34:22omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:34:22# Glacier2Template SSL allowed cipher suites
23:34:22omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:34:22# Glacier2Template SSL verification requirements
23:34:22omero.glacier2.IceSSL.VerifyPeer=0
23:34:22# Glacier2Template SSL allowed protocols
23:34:22omero.glacier2.IceSSL.Protocols=tls1
23:34:2223:34:22# Override the default set of OMERO services.
23:34:22# For example, to run OMERO.server with Blitz and Tables only
23:34:22# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:34:22# set this to ``master:Blitz-0,Tables-0``.
23:34:22# Also use this to distribute OMERO services across multiple nodes,
23:34:22# for example:
23:34:22# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:34:22# See
23:34:22# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:34:22omero.server.nodedescriptors=
23:34:2223:34:22#############################################
23:34:22## Darwin (OS X) specific defaults for templated configuration files only.
23:34:22## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:34:22## file.
23:34:22## Do not set these properties in ``omero config``, instead set the original
23:34:22## ``xxx.yyy`` property
23:34:22#############################################
23:34:22_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:34:2223:34:22## (For documentation only)
23:34:22# Name of the Python module to use when starting the Tables service
23:34:22omero.tables.module=runTables
23:34:2223:34:22#############################################
23:34:22## Server product name for release artifacts
23:34:22#############################################
23:34:22product.name=OMERO.server
23:34:2223:34:22#############################################
23:34:22### Properties below this marker are ignored by
23:34:22### omero.install.config_parser.PropertyParser
23:34:22### END
23:34:2223:34:22#############################################
23:34:22## Library versions
23:34:22#############################################
23:34:22##
23:34:22versions.findbugs=1.2.1
23:34:22versions.ice36=3.6.5
23:34:22versions.ice36_lib=36
23:34:22## internal
23:34:22versions.omeroshares36=3.6.3
23:34:22versions.omeromock36=3.6.3
23:34:22versions.icedb36=3.6.3
23:34:22versions.ipython=1.2.1
23:34:2223:34:22versions.janino=2.5.10
23:34:2223:34:22versions.reportng=1.1.1
23:34:2223:34:22versions.testng=7.5
23:34:22versions.velocity=1.4
23:34:2223:34:22versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:34:22versions.omero-scripts-url=${versions.omero-pypi}
23:34:2223:34:22# hard coded, should not be picked up by scc for now!
23:34:22versions.omero-zarr-pixel-buffer=0.7.0-rc3
23:34:2223:34:22###
23:34:22### Appended Values
23:34:22###
23:34:2223:34:22## Internal dependencies'
23:34:22+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/23:34:22+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive23:34:22+ echo versions.scripts-prefix=
23:34:22+ echo versions.scripts=merge_ci
23:34:22+ cat /home/omero/workspace/OMERO-push/version.properties
23:34:22+ git commit -a -m 'Add version.properties to etc/omero.properties'
23:34:22[detached HEAD fc0ad25e3d] Add version.properties to etc/omero.properties
23:34:22 1 file changed, 46 insertions(+), 6 deletions(-)
23:34:22+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
23:34:26To github.com:snoopycrimecop/openmicroscopy.git
23:34:26 + 18978195ab...fc0ad25e3d HEAD -> merge_ci (forced update)
23:34:26Finished: SUCCESS
