13:13:51Started by upstream project "Trigger" build number 10913:13:51originally caused by:
13:13:51 Started by user devspace13:13:51Running as SYSTEM
13:13:51Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
13:13:51The recommended git tool is: NONE
13:13:51No credentials specified
13:13:51 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
13:13:51Fetching changes from the remote Git repository
13:13:51 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
13:13:51Fetching upstream changes from https://github.com/ome/openmicroscopy.git13:13:51 > git --version # timeout=10
13:13:51 > git --version # 'git version 2.52.0'
13:13:51 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:13:58 > git rev-parse origin/develop^{commit} # timeout=10
13:13:58Checking out Revision e0330f9ffe63650eddd0c1aaabdd869a198491fc (origin/develop)
13:13:58 > git config core.sparsecheckout # timeout=10
13:13:58 > git checkout -f e0330f9ffe63650eddd0c1aaabdd869a198491fc # timeout=30
13:14:01Commit message: "Merge pull request #6458 from will-moore/get_objects_annotations_tests"
13:14:01 > git rev-list --no-walk e0330f9ffe63650eddd0c1aaabdd869a198491fc # timeout=10
13:14:01Cleaning workspace
13:14:01 > git rev-parse --verify HEAD # timeout=10
13:14:01Resetting working tree
13:14:01 > git reset --hard # timeout=10
13:14:01 > git clean -fdx # timeout=10
13:14:01Copied 1 artifact from "OMERO-python-superbuild-build" build number 7913:14:01[OMERO-push] $ /bin/bash -xe /tmp/jenkins11793280339426051375.sh
13:14:01+ python3.11 -mvenv venv
13:14:04+ source /home/omero/workspace/OMERO-push/venv/bin/activate
13:14:04++ deactivate nondestructive
13:14:04++ '[' -n '' ']'
13:14:04++ '[' -n '' ']'
13:14:04++ hash -r
13:14:04++ '[' -n '' ']'
13:14:04++ unset VIRTUAL_ENV
13:14:04++ unset VIRTUAL_ENV_PROMPT
13:14:04++ '[' '!' nondestructive = nondestructive ']'
13:14:04++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
13:14:04++ export VIRTUAL_ENV
13:14:04++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:14:04++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:14:04++ export PATH
13:14:04++ '[' -n '' ']'
13:14:04++ '[' -z '' ']'
13:14:04++ _OLD_VIRTUAL_PS1=
13:14:04++ PS1='(venv) '
13:14:04++ export PS1
13:14:04++ VIRTUAL_ENV_PROMPT='(venv) '
13:14:04++ export VIRTUAL_ENV_PROMPT
13:14:04++ hash -r
13:14:04+ pip install -U pip
13:14:09Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
13:14:09+ pip install -U scc
13:14:10Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
13:14:10Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
13:14:10Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
13:14:10Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
13:14:10Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
13:14:10Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
13:14:10Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
13:14:10Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
13:14:10Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
13:14:10Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
13:14:10Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
13:14:10Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
13:14:10Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
13:14:10Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
13:14:10Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
13:14:10Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
13:14:10Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
13:14:10Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
13:14:10Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
13:14:10+ test -e src
13:14:10+ cd src
13:14:10++ git config github.user
13:14:10+ user=snoopycrimecop
13:14:10+ scc merge develop --no-ask --reset --shallow -S success-only
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Merging Pull Request(s) based on develop
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
13:14:192026-09-25 13:14:19,640 [ scc.merge] INFO Excluding Pull Request(s) without successful status
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO Repository: ome/openmicroscopy
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO Excluded PRs:
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO Already up to date.
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO Merged PRs:
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
13:14:382026-09-25 13:14:38,411 [ scc.merge] INFO
13:14:38+ cp etc/omero.properties etc/omero.properties.bak
13:14:38+ rm etc/omero.properties
13:14:38+ touch etc/omero.properties
13:14:38++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
13:14:38+ ne=252
13:14:38++ sed -n 1,252p etc/omero.properties.bak
13:14:38+ line='##
13:14:38## omero.properties
13:14:38## ----------------
13:14:38##
13:14:38## DO NOT EDIT!
13:14:38##
13:14:38##
13:14:38## Any of these properties can be altered by using `omero config`. MODIFYING
13:14:38## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:14:38## at compile time!
13:14:38##
13:14:38## For an overview of these properties, see
13:14:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:14:38##
13:14:38## Properties marked with "DEVELOPMENT" should not be used in production.
13:14:3813:14:38# Comma separated list of Ice transports available to clients. The default
13:14:38# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:14:38# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:14:38# will prevent all non-encrypted connections to the OMERO server.
13:14:38#
13:14:38# Additionally, there are two experimental values for using websockets:
13:14:38# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:14:38# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:14:38# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:14:38#
13:14:38# Note: When using websockets behind a web server like nginx, additional
13:14:38# configuration may be needed.
13:14:38omero.client.icetransports=ssl,tcp
13:14:3813:14:38# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:14:38# server
13:14:38omero.ports.prefix=
13:14:3813:14:38# The Glacier2 SSL port number to use
13:14:38omero.ports.ssl=4064
13:14:3813:14:38# The Glacier2 TCP port number to use (unencrypted)
13:14:38omero.ports.tcp=4063
13:14:3813:14:38# The Glacier2 WSS port number to use
13:14:38omero.ports.wss=4066
13:14:3813:14:38# The Glacier2 WS port number to use (unencrypted)
13:14:38omero.ports.ws=4065
13:14:3813:14:38# The IceGrid registry port number to use
13:14:38omero.ports.registry=4061
13:14:3813:14:38#############################################
13:14:38## JVM configuration
13:14:38##
13:14:38## Note: changes to the omero.jvmcfg properties
13:14:38## will *not* be reflected in OMERO.server
13:14:38## since they are defined in OMERO.py.
13:14:38#############################################
13:14:38## (For documentation only)
13:14:38# Memory strategy which will be used by default.
13:14:38# Options include: percent, manual
13:14:38omero.jvmcfg.strategy=percent
13:14:3813:14:38## (For documentation only)
13:14:38# Explicit value for the `-Xmx` argument, e.g.
13:14:38# "1g"
13:14:38omero.jvmcfg.heap_size=
13:14:3813:14:38## (For documentation only)
13:14:38# Explicit value for the MaxPermSize argument
13:14:38# to the JVM, e.g. "500M". Ignored for Java8+
13:14:38omero.jvmcfg.perm_gen=
13:14:3813:14:38## (For documentation only)
13:14:38# Toggles on or off heap dumps on OOMs. Default is "off".
13:14:38# The special value "tmp" will create the heap dumps in
13:14:38# your temp directory.
13:14:38omero.jvmcfg.heap_dump=
13:14:3813:14:38## (For documentation only)
13:14:38# Used only by the percent strategy. An integer between 0
13:14:38# and 100 which is the percent of active memory that will
13:14:38# be used by the service.
13:14:38omero.jvmcfg.percent=
13:14:3813:14:38## (For documentation only)
13:14:38# Contains other parameters which should be passed to the
13:14:38# JVM. The value of "append" is treated as if it were on
13:14:38# the command line so will be separated on whitespace.
13:14:38# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:14:38# results in two new arguments.
13:14:38# Note that when using `config set` from the command line
13:14:38# one may need to give a prior `--` option to prevent a value
13:14:38# starting with `-` from already being parsed as an option,
13:14:38# and values may need quoting to prevent whitespace or other
13:14:38# significant characters from being interpreted prematurely.
13:14:3813:14:38omero.jvmcfg.append=
13:14:3813:14:38## (For documentation only)
13:14:38# Manual override of the total system memory that
13:14:38# OMERO will *think* is present on the local OS (MB).
13:14:38# If unset, an attempt will be made to detect the actual
13:14:38# amount: first by using the Python library `psutil` and
13:14:38# if that is not installed, by running a Java tool. If
13:14:38# neither works, 4.0GB is assumed.
13:14:38omero.jvmcfg.system_memory=
13:14:3813:14:38## (For documentation only)
13:14:38# Suggestion for strategies as to the minimum memory
13:14:38# that they will use for calculating JVM settings (MB).
13:14:38omero.jvmcfg.min_system_memory=3414
13:14:3813:14:38## (For documentation only)
13:14:38# Suggestion for strategies as to the maximum memory
13:14:38# that they will use for calculating JVM settings (MB).
13:14:38omero.jvmcfg.max_system_memory=48000
13:14:3813:14:3813:14:38#############################################
13:14:38## Logging properties
13:14:38##
13:14:38## Note: changes to the default omero.logging values in
13:14:38## this file will *not* be reflected in OMERO.server
13:14:38## since they are defined in OMERO.py
13:14:38#############################################
13:14:3813:14:38## (For documentation only)
13:14:38# Relative server directory where the log files should be stored.
13:14:38omero.logging.directory=var/log/
13:14:3813:14:38## (For documentation only)
13:14:38# Whether the server log files should be rotated at a certain time
13:14:38# interval. If true, log files will be rolled over at midnight.
13:14:38# Otherwise, log files will be rolled over at a predetermined size,
13:14:38# see omero.logging.logsize for more information.
13:14:38omero.logging.timedlog=false
13:14:3813:14:38## (For documentation only)
13:14:38# If omero.logging.timedlog is false or unset, specifies the
13:14:38# maximum size of the server log files in bytes above which a
13:14:38# new log file should be created.
13:14:38omero.logging.logsize=5000000
13:14:3813:14:38## (For documentation only)
13:14:38# If omero.logging.timedlog is false or unset, specifies the
13:14:38# number of old server log files that should be kept. Old log
13:14:38# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:14:38omero.logging.lognum=9
13:14:3813:14:38## (For documentation only)
13:14:38# Specifies the threshold for the Python servers log files. Logging messages
13:14:38# which are less severe than this value will be ignored. For a list of
13:14:38# available values, see https://docs.python.org/3/library/logging.html#levels.
13:14:38omero.logging.level=20
13:14:3813:14:38#############################################
13:14:38## Ice overrides
13:14:38##
13:14:38## Though not used directly by OMERO, a number
13:14:38## of properties prefixed with "Ice.*" will
13:14:38## alter the behavior of the OMERO runtime
13:14:38## by configuring the Ice communicators. For a
13:14:38## full listing see:
13:14:38##
13:14:38## http://doc.zeroc.com/display/Ice/Property+Reference13:14:38## For more information see
13:14:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:14:38#############################################
13:14:3813:14:38# Disable IPv6 by setting to 0. Only needed in
13:14:38# certain situations.
13:14:38Ice.IPv6=1
13:14:3813:14:38# Glacier2Template IceSSL defaults and overrides,
13:14:38# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
13:14:38# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:14:38# update the corresponding IceSSL. property.
13:14:38omero.glacier2.IceSSL=
13:14:3813:14:38# Glacier2Template SSL maximum allowed protocol (mac bug)
13:14:38omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:14:38# Glacier2Template SSL allowed cipher suites
13:14:38omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:14:38# Glacier2Template SSL verification requirements
13:14:38omero.glacier2.IceSSL.VerifyPeer=0
13:14:38# Glacier2Template SSL allowed protocols
13:14:38omero.glacier2.IceSSL.Protocols=tls1
13:14:3813:14:38# Override the default set of OMERO services.
13:14:38# For example, to run OMERO.server with Blitz and Tables only
13:14:38# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:14:38# set this to ``master:Blitz-0,Tables-0``.
13:14:38# Also use this to distribute OMERO services across multiple nodes,
13:14:38# for example:
13:14:38# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:14:38# See
13:14:38# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:14:38omero.server.nodedescriptors=
13:14:3813:14:38#############################################
13:14:38## Darwin (OS X) specific defaults for templated configuration files only.
13:14:38## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:14:38## file.
13:14:38## Do not set these properties in ``omero config``, instead set the original
13:14:38## ``xxx.yyy`` property
13:14:38#############################################
13:14:38_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:14:3813:14:38## (For documentation only)
13:14:38# Name of the Python module to use when starting the Tables service
13:14:38omero.tables.module=runTables
13:14:3813:14:38#############################################
13:14:38## Server product name for release artifacts
13:14:38#############################################
13:14:38product.name=OMERO.server
13:14:3813:14:38#############################################
13:14:38### Properties below this marker are ignored by
13:14:38### omero.install.config_parser.PropertyParser
13:14:38### END
13:14:3813:14:38#############################################
13:14:38## Library versions
13:14:38#############################################
13:14:38##
13:14:38versions.findbugs=1.2.1
13:14:38versions.ice36=3.6.5
13:14:38versions.ice36_lib=36
13:14:38## internal
13:14:38versions.omeroshares36=3.6.3
13:14:38versions.omeromock36=3.6.3
13:14:38versions.icedb36=3.6.3
13:14:38versions.ipython=1.2.1
13:14:3813:14:38versions.janino=2.5.10
13:14:3813:14:38versions.reportng=1.1.1
13:14:3813:14:38versions.testng=7.5
13:14:38versions.velocity=1.4
13:14:3813:14:38versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:14:38versions.omero-scripts-url=${versions.omero-pypi}
13:14:3813:14:38# hard coded, should not be picked up by scc for now!
13:14:38versions.omero-zarr-pixel-buffer=0.7.1
13:14:3813:14:38###
13:14:38### Appended Values
13:14:38###
13:14:3813:14:38## Internal dependencies'
13:14:38+ echo '##
13:14:38## omero.properties
13:14:38## ----------------
13:14:38##
13:14:38## DO NOT EDIT!
13:14:38##
13:14:38##
13:14:38## Any of these properties can be altered by using `omero config`. MODIFYING
13:14:38## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
13:14:38## at compile time!
13:14:38##
13:14:38## For an overview of these properties, see
13:14:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html13:14:38##
13:14:38## Properties marked with "DEVELOPMENT" should not be used in production.
13:14:3813:14:38# Comma separated list of Ice transports available to clients. The default
13:14:38# value ("ssl,tcp") instructs Ice to open the ports specified by the
13:14:38# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
13:14:38# will prevent all non-encrypted connections to the OMERO server.
13:14:38#
13:14:38# Additionally, there are two experimental values for using websockets:
13:14:38# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
13:14:38# that are opened are controlled by the omero.ports.ws and omero.ports.wss
13:14:38# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
13:14:38#
13:14:38# Note: When using websockets behind a web server like nginx, additional
13:14:38# configuration may be needed.
13:14:38omero.client.icetransports=ssl,tcp
13:14:3813:14:38# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
13:14:38# server
13:14:38omero.ports.prefix=
13:14:3813:14:38# The Glacier2 SSL port number to use
13:14:38omero.ports.ssl=4064
13:14:3813:14:38# The Glacier2 TCP port number to use (unencrypted)
13:14:38omero.ports.tcp=4063
13:14:3813:14:38# The Glacier2 WSS port number to use
13:14:38omero.ports.wss=4066
13:14:3813:14:38# The Glacier2 WS port number to use (unencrypted)
13:14:38omero.ports.ws=4065
13:14:3813:14:38# The IceGrid registry port number to use
13:14:38omero.ports.registry=4061
13:14:3813:14:38#############################################
13:14:38## JVM configuration
13:14:38##
13:14:38## Note: changes to the omero.jvmcfg properties
13:14:38## will *not* be reflected in OMERO.server
13:14:38## since they are defined in OMERO.py.
13:14:38#############################################
13:14:38## (For documentation only)
13:14:38# Memory strategy which will be used by default.
13:14:38# Options include: percent, manual
13:14:38omero.jvmcfg.strategy=percent
13:14:3813:14:38## (For documentation only)
13:14:38# Explicit value for the `-Xmx` argument, e.g.
13:14:38# "1g"
13:14:38omero.jvmcfg.heap_size=
13:14:3813:14:38## (For documentation only)
13:14:38# Explicit value for the MaxPermSize argument
13:14:38# to the JVM, e.g. "500M". Ignored for Java8+
13:14:38omero.jvmcfg.perm_gen=
13:14:3813:14:38## (For documentation only)
13:14:38# Toggles on or off heap dumps on OOMs. Default is "off".
13:14:38# The special value "tmp" will create the heap dumps in
13:14:38# your temp directory.
13:14:38omero.jvmcfg.heap_dump=
13:14:3813:14:38## (For documentation only)
13:14:38# Used only by the percent strategy. An integer between 0
13:14:38# and 100 which is the percent of active memory that will
13:14:38# be used by the service.
13:14:38omero.jvmcfg.percent=
13:14:3813:14:38## (For documentation only)
13:14:38# Contains other parameters which should be passed to the
13:14:38# JVM. The value of "append" is treated as if it were on
13:14:38# the command line so will be separated on whitespace.
13:14:38# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
13:14:38# results in two new arguments.
13:14:38# Note that when using `config set` from the command line
13:14:38# one may need to give a prior `--` option to prevent a value
13:14:38# starting with `-` from already being parsed as an option,
13:14:38# and values may need quoting to prevent whitespace or other
13:14:38# significant characters from being interpreted prematurely.
13:14:3813:14:38omero.jvmcfg.append=
13:14:3813:14:38## (For documentation only)
13:14:38# Manual override of the total system memory that
13:14:38# OMERO will *think* is present on the local OS (MB).
13:14:38# If unset, an attempt will be made to detect the actual
13:14:38# amount: first by using the Python library `psutil` and
13:14:38# if that is not installed, by running a Java tool. If
13:14:38# neither works, 4.0GB is assumed.
13:14:38omero.jvmcfg.system_memory=
13:14:3813:14:38## (For documentation only)
13:14:38# Suggestion for strategies as to the minimum memory
13:14:38# that they will use for calculating JVM settings (MB).
13:14:38omero.jvmcfg.min_system_memory=3414
13:14:3813:14:38## (For documentation only)
13:14:38# Suggestion for strategies as to the maximum memory
13:14:38# that they will use for calculating JVM settings (MB).
13:14:38omero.jvmcfg.max_system_memory=48000
13:14:3813:14:3813:14:38#############################################
13:14:38## Logging properties
13:14:38##
13:14:38## Note: changes to the default omero.logging values in
13:14:38## this file will *not* be reflected in OMERO.server
13:14:38## since they are defined in OMERO.py
13:14:38#############################################
13:14:3813:14:38## (For documentation only)
13:14:38# Relative server directory where the log files should be stored.
13:14:38omero.logging.directory=var/log/
13:14:3813:14:38## (For documentation only)
13:14:38# Whether the server log files should be rotated at a certain time
13:14:38# interval. If true, log files will be rolled over at midnight.
13:14:38# Otherwise, log files will be rolled over at a predetermined size,
13:14:38# see omero.logging.logsize for more information.
13:14:38omero.logging.timedlog=false
13:14:3813:14:38## (For documentation only)
13:14:38# If omero.logging.timedlog is false or unset, specifies the
13:14:38# maximum size of the server log files in bytes above which a
13:14:38# new log file should be created.
13:14:38omero.logging.logsize=5000000
13:14:3813:14:38## (For documentation only)
13:14:38# If omero.logging.timedlog is false or unset, specifies the
13:14:38# number of old server log files that should be kept. Old log
13:14:38# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
13:14:38omero.logging.lognum=9
13:14:3813:14:38## (For documentation only)
13:14:38# Specifies the threshold for the Python servers log files. Logging messages
13:14:38# which are less severe than this value will be ignored. For a list of
13:14:38# available values, see https://docs.python.org/3/library/logging.html#levels.
13:14:38omero.logging.level=20
13:14:3813:14:38#############################################
13:14:38## Ice overrides
13:14:38##
13:14:38## Though not used directly by OMERO, a number
13:14:38## of properties prefixed with "Ice.*" will
13:14:38## alter the behavior of the OMERO runtime
13:14:38## by configuring the Ice communicators. For a
13:14:38## full listing see:
13:14:38##
13:14:38## http://doc.zeroc.com/display/Ice/Property+Reference13:14:38## For more information see
13:14:38## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start13:14:38#############################################
13:14:3813:14:38# Disable IPv6 by setting to 0. Only needed in
13:14:38# certain situations.
13:14:38Ice.IPv6=1
13:14:3813:14:38# Glacier2Template IceSSL defaults and overrides,
13:14:38# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
13:14:38# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
13:14:38# update the corresponding IceSSL. property.
13:14:38omero.glacier2.IceSSL=
13:14:3813:14:38# Glacier2Template SSL maximum allowed protocol (mac bug)
13:14:38omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
13:14:38# Glacier2Template SSL allowed cipher suites
13:14:38omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
13:14:38# Glacier2Template SSL verification requirements
13:14:38omero.glacier2.IceSSL.VerifyPeer=0
13:14:38# Glacier2Template SSL allowed protocols
13:14:38omero.glacier2.IceSSL.Protocols=tls1
13:14:3813:14:38# Override the default set of OMERO services.
13:14:38# For example, to run OMERO.server with Blitz and Tables only
13:14:38# (i.e. disable Processor, DropBox, Indexer, PixelData)
13:14:38# set this to ``master:Blitz-0,Tables-0``.
13:14:38# Also use this to distribute OMERO services across multiple nodes,
13:14:38# for example:
13:14:38# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
13:14:38# See
13:14:38# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples13:14:38omero.server.nodedescriptors=
13:14:3813:14:38#############################################
13:14:38## Darwin (OS X) specific defaults for templated configuration files only.
13:14:38## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
13:14:38## file.
13:14:38## Do not set these properties in ``omero config``, instead set the original
13:14:38## ``xxx.yyy`` property
13:14:38#############################################
13:14:38_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
13:14:3813:14:38## (For documentation only)
13:14:38# Name of the Python module to use when starting the Tables service
13:14:38omero.tables.module=runTables
13:14:3813:14:38#############################################
13:14:38## Server product name for release artifacts
13:14:38#############################################
13:14:38product.name=OMERO.server
13:14:3813:14:38#############################################
13:14:38### Properties below this marker are ignored by
13:14:38### omero.install.config_parser.PropertyParser
13:14:38### END
13:14:3813:14:38#############################################
13:14:38## Library versions
13:14:38#############################################
13:14:38##
13:14:38versions.findbugs=1.2.1
13:14:38versions.ice36=3.6.5
13:14:38versions.ice36_lib=36
13:14:38## internal
13:14:38versions.omeroshares36=3.6.3
13:14:38versions.omeromock36=3.6.3
13:14:38versions.icedb36=3.6.3
13:14:38versions.ipython=1.2.1
13:14:3813:14:38versions.janino=2.5.10
13:14:3813:14:38versions.reportng=1.1.1
13:14:3813:14:38versions.testng=7.5
13:14:38versions.velocity=1.4
13:14:3813:14:38versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE13:14:38versions.omero-scripts-url=${versions.omero-pypi}
13:14:3813:14:38# hard coded, should not be picked up by scc for now!
13:14:38versions.omero-zarr-pixel-buffer=0.7.1
13:14:3813:14:38###
13:14:38### Appended Values
13:14:38###
13:14:3813:14:38## Internal dependencies'
13:14:38+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/13:14:38+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive13:14:38+ echo versions.scripts-prefix=
13:14:38+ echo versions.scripts=merge_ci
13:14:38+ cat /home/omero/workspace/OMERO-push/version.properties
13:14:38+ git commit -a -m 'Add version.properties to etc/omero.properties'
13:14:38[detached HEAD d9c4aec736] Add version.properties to etc/omero.properties
13:14:38 1 file changed, 46 insertions(+), 5 deletions(-)
13:14:38+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
13:14:41To github.com:snoopycrimecop/openmicroscopy.git
13:14:41 + 56c3d562aa...d9c4aec736 HEAD -> merge_ci (forced update)
13:14:42Finished: SUCCESS
