11:40:33Started by user devspace11:40:33Running as SYSTEM
11:40:33Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
11:40:33The recommended git tool is: NONE
11:40:33No credentials specified
11:40:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
11:40:33Fetching changes from the remote Git repository
11:40:33 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
11:40:33Fetching upstream changes from https://github.com/ome/openmicroscopy.git11:40:33 > git --version # timeout=10
11:40:33 > git --version # 'git version 2.52.0'
11:40:33 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:40:35 > git rev-parse origin/develop^{commit} # timeout=10
11:40:35Checking out Revision 1dc039c0b73e41efb6ce0f158c970995b2dbb524 (origin/develop)
11:40:35 > git config core.sparsecheckout # timeout=10
11:40:35 > git checkout -f 1dc039c0b73e41efb6ce0f158c970995b2dbb524 # timeout=30
11:40:36Commit message: "Merge pull request #6471 from pwalczysko/pyramids-proper"
11:40:36 > git rev-list --no-walk 1dc039c0b73e41efb6ce0f158c970995b2dbb524 # timeout=10
11:40:36Cleaning workspace
11:40:36 > git rev-parse --verify HEAD # timeout=10
11:40:36Resetting working tree
11:40:36 > git reset --hard # timeout=10
11:40:36 > git clean -fdx # timeout=10
11:40:37Copied 1 artifact from "OMERO-python-superbuild-build" build number 2811:40:37[OMERO-push] $ /bin/bash -xe /tmp/jenkins8717548701119184736.sh
11:40:37+ python3.11 -mvenv venv
11:40:39+ source /home/omero/workspace/OMERO-push/venv/bin/activate
11:40:39++ deactivate nondestructive
11:40:39++ '[' -n '' ']'
11:40:39++ '[' -n '' ']'
11:40:39++ hash -r
11:40:39++ '[' -n '' ']'
11:40:39++ unset VIRTUAL_ENV
11:40:39++ unset VIRTUAL_ENV_PROMPT
11:40:39++ '[' '!' nondestructive = nondestructive ']'
11:40:39++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
11:40:39++ export VIRTUAL_ENV
11:40:39++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:40:39++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:40:39++ export PATH
11:40:39++ '[' -n '' ']'
11:40:39++ '[' -z '' ']'
11:40:39++ _OLD_VIRTUAL_PS1=
11:40:39++ PS1='(venv) '
11:40:39++ export PS1
11:40:39++ VIRTUAL_ENV_PROMPT='(venv) '
11:40:39++ export VIRTUAL_ENV_PROMPT
11:40:39++ hash -r
11:40:39+ pip install -U pip
11:40:40Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2)
11:40:41+ pip install -U scc
11:40:41Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
11:40:42Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
11:40:42Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
11:40:42Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
11:40:42Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
11:40:42Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
11:40:42Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
11:40:42Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
11:40:42Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
11:40:42Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
11:40:42Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
11:40:42Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
11:40:42Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
11:40:42Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
11:40:42Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
11:40:42Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
11:40:42Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
11:40:42Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
11:40:42Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
11:40:42+ test -e src
11:40:42+ cd src
11:40:42++ git config github.user
11:40:42+ user=snoopycrimecop
11:40:42+ scc merge develop --no-ask --reset --shallow -S success-only
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Merging Pull Request(s) based on develop
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
11:40:482026-08-03 11:40:48,069 [ scc.merge] INFO Excluding Pull Request(s) without successful status
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO Repository: ome/openmicroscopy
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO Excluded PRs:
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6472 pwalczysko 'Try to fix thumb test [one,set]' (label: exclude)
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure)
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO Already up to date.
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO Merged PRs:
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO - PR 6473 sbesson 'Java skip thumbnails permission tests: use fake pyramidal images'
11:41:102026-08-03 11:41:10,204 [ scc.merge] INFO
11:41:10+ cp etc/omero.properties etc/omero.properties.bak
11:41:10+ rm etc/omero.properties
11:41:10+ touch etc/omero.properties
11:41:10++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
11:41:10+ ne=249
11:41:10++ sed -n 1,249p etc/omero.properties.bak
11:41:10+ line='##
11:41:10## omero.properties
11:41:10## ----------------
11:41:10##
11:41:10## DO NOT EDIT!
11:41:10##
11:41:10##
11:41:10## Any of these properties can be altered by using `omero config`. MODIFYING
11:41:10## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:41:10## at compile time!
11:41:10##
11:41:10## For an overview of these properties, see
11:41:10## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:41:10##
11:41:10## Properties marked with "DEVELOPMENT" should not be used in production.
11:41:1011:41:10# Comma separated list of Ice transports available to clients. The default
11:41:10# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:41:10# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:41:10# will prevent all non-encrypted connections to the OMERO server.
11:41:10#
11:41:10# Additionally, there are two experimental values for using websockets:
11:41:10# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:41:10# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:41:10# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:41:10#
11:41:10# Note: When using websockets behind a web server like nginx, additional
11:41:10# configuration may be needed.
11:41:10omero.client.icetransports=ssl,tcp
11:41:1011:41:10# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:41:10# server
11:41:10omero.ports.prefix=
11:41:1011:41:10# The Glacier2 SSL port number to use
11:41:10omero.ports.ssl=4064
11:41:1011:41:10# The Glacier2 TCP port number to use (unencrypted)
11:41:10omero.ports.tcp=4063
11:41:1011:41:10# The Glacier2 WSS port number to use
11:41:10omero.ports.wss=4066
11:41:1011:41:10# The Glacier2 WS port number to use (unencrypted)
11:41:10omero.ports.ws=4065
11:41:1011:41:10# The IceGrid registry port number to use
11:41:10omero.ports.registry=4061
11:41:1011:41:10#############################################
11:41:10## JVM configuration
11:41:10##
11:41:10## Note: changes to the omero.jvmcfg properties
11:41:10## will *not* be reflected in OMERO.server
11:41:10## since they are defined in OMERO.py.
11:41:10#############################################
11:41:10## (For documentation only)
11:41:10# Memory strategy which will be used by default.
11:41:10# Options include: percent, manual
11:41:10omero.jvmcfg.strategy=percent
11:41:1011:41:10## (For documentation only)
11:41:10# Explicit value for the `-Xmx` argument, e.g.
11:41:10# "1g"
11:41:10omero.jvmcfg.heap_size=
11:41:1011:41:10## (For documentation only)
11:41:10# Explicit value for the MaxPermSize argument
11:41:10# to the JVM, e.g. "500M". Ignored for Java8+
11:41:10omero.jvmcfg.perm_gen=
11:41:1011:41:10## (For documentation only)
11:41:10# Toggles on or off heap dumps on OOMs. Default is "off".
11:41:10# The special value "tmp" will create the heap dumps in
11:41:10# your temp directory.
11:41:10omero.jvmcfg.heap_dump=
11:41:1011:41:10## (For documentation only)
11:41:10# Used only by the percent strategy. An integer between 0
11:41:10# and 100 which is the percent of active memory that will
11:41:10# be used by the service.
11:41:10omero.jvmcfg.percent=
11:41:1011:41:10## (For documentation only)
11:41:10# Contains other parameters which should be passed to the
11:41:10# JVM. The value of "append" is treated as if it were on
11:41:10# the command line so will be separated on whitespace.
11:41:10# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:41:10# results in two new arguments.
11:41:10# Note that when using `config set` from the command line
11:41:10# one may need to give a prior `--` option to prevent a value
11:41:10# starting with `-` from already being parsed as an option,
11:41:10# and values may need quoting to prevent whitespace or other
11:41:10# significant characters from being interpreted prematurely.
11:41:1011:41:10omero.jvmcfg.append=
11:41:1011:41:10## (For documentation only)
11:41:10# Manual override of the total system memory that
11:41:10# OMERO will *think* is present on the local OS (MB).
11:41:10# If unset, an attempt will be made to detect the actual
11:41:10# amount: first by using the Python library `psutil` and
11:41:10# if that is not installed, by running a Java tool. If
11:41:10# neither works, 4.0GB is assumed.
11:41:10omero.jvmcfg.system_memory=
11:41:1011:41:10## (For documentation only)
11:41:10# Suggestion for strategies as to the minimum memory
11:41:10# that they will use for calculating JVM settings (MB).
11:41:10omero.jvmcfg.min_system_memory=3414
11:41:1011:41:10## (For documentation only)
11:41:10# Suggestion for strategies as to the maximum memory
11:41:10# that they will use for calculating JVM settings (MB).
11:41:10omero.jvmcfg.max_system_memory=48000
11:41:1011:41:1011:41:10#############################################
11:41:10## Logging properties
11:41:10##
11:41:10## Note: changes to the default omero.logging values in
11:41:10## this file will *not* be reflected in OMERO.server
11:41:10## since they are defined in OMERO.py
11:41:10#############################################
11:41:1011:41:10## (For documentation only)
11:41:10# Relative server directory where the log files should be stored.
11:41:10omero.logging.directory=var/log/
11:41:1011:41:10## (For documentation only)
11:41:10# Whether the server log files should be rotated at a certain time
11:41:10# interval. If true, log files will be rolled over at midnight.
11:41:10# Otherwise, log files will be rolled over at a predetermined size,
11:41:10# see omero.logging.logsize for more information.
11:41:10omero.logging.timedlog=false
11:41:1011:41:10## (For documentation only)
11:41:10# If omero.logging.timedlog is false or unset, specifies the
11:41:10# maximum size of the server log files in bytes above which a
11:41:10# new log file should be created.
11:41:10omero.logging.logsize=5000000
11:41:1011:41:10## (For documentation only)
11:41:10# If omero.logging.timedlog is false or unset, specifies the
11:41:10# number of old server log files that should be kept. Old log
11:41:10# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:41:10omero.logging.lognum=9
11:41:1011:41:10## (For documentation only)
11:41:10# Specifies the threshold for the Python servers log files. Logging messages
11:41:10# which are less severe than this value will be ignored. For a list of
11:41:10# available values, see https://docs.python.org/3/library/logging.html#levels.
11:41:10omero.logging.level=20
11:41:1011:41:10#############################################
11:41:10## Ice overrides
11:41:10##
11:41:10## Though not used directly by OMERO, a number
11:41:10## of properties prefixed with "Ice.*" will
11:41:10## alter the behavior of the OMERO runtime
11:41:10## by configuring the Ice communicators. For a
11:41:10## full listing see:
11:41:10##
11:41:10## http://doc.zeroc.com/display/Ice/Property+Reference11:41:10## For more information see
11:41:10## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:41:10#############################################
11:41:1011:41:10# Disable IPv6 by setting to 0. Only needed in
11:41:10# certain situations.
11:41:10Ice.IPv6=1
11:41:1011:41:10# Glacier2Template IceSSL defaults and overrides,
11:41:10# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:41:10# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:41:10# update the corresponding IceSSL. property.
11:41:10omero.glacier2.IceSSL=
11:41:1011:41:10# Glacier2Template SSL maximum allowed protocol (mac bug)
11:41:10omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:41:10# Glacier2Template SSL allowed cipher suites
11:41:10omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:41:10# Glacier2Template SSL verification requirements
11:41:10omero.glacier2.IceSSL.VerifyPeer=0
11:41:10# Glacier2Template SSL allowed protocols
11:41:10omero.glacier2.IceSSL.Protocols=tls1
11:41:1011:41:10# Override the default set of OMERO services.
11:41:10# For example, to run OMERO.server with Blitz and Tables only
11:41:10# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:41:10# set this to ``master:Blitz-0,Tables-0``.
11:41:10# Also use this to distribute OMERO services across multiple nodes,
11:41:10# for example:
11:41:10# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:41:10# See
11:41:10# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:41:10omero.server.nodedescriptors=
11:41:1011:41:10#############################################
11:41:10## Darwin (OS X) specific defaults for templated configuration files only.
11:41:10## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:41:10## file.
11:41:10## Do not set these properties in ``omero config``, instead set the original
11:41:10## ``xxx.yyy`` property
11:41:10#############################################
11:41:10_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:41:1011:41:10## (For documentation only)
11:41:10# Name of the Python module to use when starting the Tables service
11:41:10omero.tables.module=runTables
11:41:1011:41:10#############################################
11:41:10## Server product name for release artifacts
11:41:10#############################################
11:41:10product.name=OMERO.server
11:41:1011:41:10#############################################
11:41:10### Properties below this marker are ignored by
11:41:10### omero.install.config_parser.PropertyParser
11:41:10### END
11:41:1011:41:10#############################################
11:41:10## Library versions
11:41:10#############################################
11:41:10##
11:41:10versions.findbugs=1.2.1
11:41:10versions.ice36=3.6.5
11:41:10versions.ice36_lib=36
11:41:10## internal
11:41:10versions.omeroshares36=3.6.3
11:41:10versions.omeromock36=3.6.3
11:41:10versions.icedb36=3.6.3
11:41:10versions.ipython=1.2.1
11:41:1011:41:10versions.janino=2.5.10
11:41:1011:41:10versions.reportng=1.1.1
11:41:1011:41:10versions.testng=7.5
11:41:10versions.velocity=1.4
11:41:1011:41:10versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:41:10versions.omero-scripts-url=${versions.omero-pypi}
11:41:1011:41:10###
11:41:10### Appended Values
11:41:10###
11:41:1011:41:10## Internal dependencies'
11:41:10+ echo '##
11:41:10## omero.properties
11:41:10## ----------------
11:41:10##
11:41:10## DO NOT EDIT!
11:41:10##
11:41:10##
11:41:10## Any of these properties can be altered by using `omero config`. MODIFYING
11:41:10## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:41:10## at compile time!
11:41:10##
11:41:10## For an overview of these properties, see
11:41:10## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:41:10##
11:41:10## Properties marked with "DEVELOPMENT" should not be used in production.
11:41:1011:41:10# Comma separated list of Ice transports available to clients. The default
11:41:10# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:41:10# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:41:10# will prevent all non-encrypted connections to the OMERO server.
11:41:10#
11:41:10# Additionally, there are two experimental values for using websockets:
11:41:10# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:41:10# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:41:10# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:41:10#
11:41:10# Note: When using websockets behind a web server like nginx, additional
11:41:10# configuration may be needed.
11:41:10omero.client.icetransports=ssl,tcp
11:41:1011:41:10# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:41:10# server
11:41:10omero.ports.prefix=
11:41:1011:41:10# The Glacier2 SSL port number to use
11:41:10omero.ports.ssl=4064
11:41:1011:41:10# The Glacier2 TCP port number to use (unencrypted)
11:41:10omero.ports.tcp=4063
11:41:1011:41:10# The Glacier2 WSS port number to use
11:41:10omero.ports.wss=4066
11:41:1011:41:10# The Glacier2 WS port number to use (unencrypted)
11:41:10omero.ports.ws=4065
11:41:1011:41:10# The IceGrid registry port number to use
11:41:10omero.ports.registry=4061
11:41:1011:41:10#############################################
11:41:10## JVM configuration
11:41:10##
11:41:10## Note: changes to the omero.jvmcfg properties
11:41:10## will *not* be reflected in OMERO.server
11:41:10## since they are defined in OMERO.py.
11:41:10#############################################
11:41:10## (For documentation only)
11:41:10# Memory strategy which will be used by default.
11:41:10# Options include: percent, manual
11:41:10omero.jvmcfg.strategy=percent
11:41:1011:41:10## (For documentation only)
11:41:10# Explicit value for the `-Xmx` argument, e.g.
11:41:10# "1g"
11:41:10omero.jvmcfg.heap_size=
11:41:1011:41:10## (For documentation only)
11:41:10# Explicit value for the MaxPermSize argument
11:41:10# to the JVM, e.g. "500M". Ignored for Java8+
11:41:10omero.jvmcfg.perm_gen=
11:41:1011:41:10## (For documentation only)
11:41:10# Toggles on or off heap dumps on OOMs. Default is "off".
11:41:10# The special value "tmp" will create the heap dumps in
11:41:10# your temp directory.
11:41:10omero.jvmcfg.heap_dump=
11:41:1011:41:10## (For documentation only)
11:41:10# Used only by the percent strategy. An integer between 0
11:41:10# and 100 which is the percent of active memory that will
11:41:10# be used by the service.
11:41:10omero.jvmcfg.percent=
11:41:1011:41:10## (For documentation only)
11:41:10# Contains other parameters which should be passed to the
11:41:10# JVM. The value of "append" is treated as if it were on
11:41:10# the command line so will be separated on whitespace.
11:41:10# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:41:10# results in two new arguments.
11:41:10# Note that when using `config set` from the command line
11:41:10# one may need to give a prior `--` option to prevent a value
11:41:10# starting with `-` from already being parsed as an option,
11:41:10# and values may need quoting to prevent whitespace or other
11:41:10# significant characters from being interpreted prematurely.
11:41:1011:41:10omero.jvmcfg.append=
11:41:1011:41:10## (For documentation only)
11:41:10# Manual override of the total system memory that
11:41:10# OMERO will *think* is present on the local OS (MB).
11:41:10# If unset, an attempt will be made to detect the actual
11:41:10# amount: first by using the Python library `psutil` and
11:41:10# if that is not installed, by running a Java tool. If
11:41:10# neither works, 4.0GB is assumed.
11:41:10omero.jvmcfg.system_memory=
11:41:1011:41:10## (For documentation only)
11:41:10# Suggestion for strategies as to the minimum memory
11:41:10# that they will use for calculating JVM settings (MB).
11:41:10omero.jvmcfg.min_system_memory=3414
11:41:1011:41:10## (For documentation only)
11:41:10# Suggestion for strategies as to the maximum memory
11:41:10# that they will use for calculating JVM settings (MB).
11:41:10omero.jvmcfg.max_system_memory=48000
11:41:1011:41:1011:41:10#############################################
11:41:10## Logging properties
11:41:10##
11:41:10## Note: changes to the default omero.logging values in
11:41:10## this file will *not* be reflected in OMERO.server
11:41:10## since they are defined in OMERO.py
11:41:10#############################################
11:41:1011:41:10## (For documentation only)
11:41:10# Relative server directory where the log files should be stored.
11:41:10omero.logging.directory=var/log/
11:41:1011:41:10## (For documentation only)
11:41:10# Whether the server log files should be rotated at a certain time
11:41:10# interval. If true, log files will be rolled over at midnight.
11:41:10# Otherwise, log files will be rolled over at a predetermined size,
11:41:10# see omero.logging.logsize for more information.
11:41:10omero.logging.timedlog=false
11:41:1011:41:10## (For documentation only)
11:41:10# If omero.logging.timedlog is false or unset, specifies the
11:41:10# maximum size of the server log files in bytes above which a
11:41:10# new log file should be created.
11:41:10omero.logging.logsize=5000000
11:41:1011:41:10## (For documentation only)
11:41:10# If omero.logging.timedlog is false or unset, specifies the
11:41:10# number of old server log files that should be kept. Old log
11:41:10# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:41:10omero.logging.lognum=9
11:41:1011:41:10## (For documentation only)
11:41:10# Specifies the threshold for the Python servers log files. Logging messages
11:41:10# which are less severe than this value will be ignored. For a list of
11:41:10# available values, see https://docs.python.org/3/library/logging.html#levels.
11:41:10omero.logging.level=20
11:41:1011:41:10#############################################
11:41:10## Ice overrides
11:41:10##
11:41:10## Though not used directly by OMERO, a number
11:41:10## of properties prefixed with "Ice.*" will
11:41:10## alter the behavior of the OMERO runtime
11:41:10## by configuring the Ice communicators. For a
11:41:10## full listing see:
11:41:10##
11:41:10## http://doc.zeroc.com/display/Ice/Property+Reference11:41:10## For more information see
11:41:10## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:41:10#############################################
11:41:1011:41:10# Disable IPv6 by setting to 0. Only needed in
11:41:10# certain situations.
11:41:10Ice.IPv6=1
11:41:1011:41:10# Glacier2Template IceSSL defaults and overrides,
11:41:10# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:41:10# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:41:10# update the corresponding IceSSL. property.
11:41:10omero.glacier2.IceSSL=
11:41:1011:41:10# Glacier2Template SSL maximum allowed protocol (mac bug)
11:41:10omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:41:10# Glacier2Template SSL allowed cipher suites
11:41:10omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:41:10# Glacier2Template SSL verification requirements
11:41:10omero.glacier2.IceSSL.VerifyPeer=0
11:41:10# Glacier2Template SSL allowed protocols
11:41:10omero.glacier2.IceSSL.Protocols=tls1
11:41:1011:41:10# Override the default set of OMERO services.
11:41:10# For example, to run OMERO.server with Blitz and Tables only
11:41:10# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:41:10# set this to ``master:Blitz-0,Tables-0``.
11:41:10# Also use this to distribute OMERO services across multiple nodes,
11:41:10# for example:
11:41:10# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:41:10# See
11:41:10# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:41:10omero.server.nodedescriptors=
11:41:1011:41:10#############################################
11:41:10## Darwin (OS X) specific defaults for templated configuration files only.
11:41:10## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:41:10## file.
11:41:10## Do not set these properties in ``omero config``, instead set the original
11:41:10## ``xxx.yyy`` property
11:41:10#############################################
11:41:10_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:41:1011:41:10## (For documentation only)
11:41:10# Name of the Python module to use when starting the Tables service
11:41:10omero.tables.module=runTables
11:41:1011:41:10#############################################
11:41:10## Server product name for release artifacts
11:41:10#############################################
11:41:10product.name=OMERO.server
11:41:1011:41:10#############################################
11:41:10### Properties below this marker are ignored by
11:41:10### omero.install.config_parser.PropertyParser
11:41:10### END
11:41:1011:41:10#############################################
11:41:10## Library versions
11:41:10#############################################
11:41:10##
11:41:10versions.findbugs=1.2.1
11:41:10versions.ice36=3.6.5
11:41:10versions.ice36_lib=36
11:41:10## internal
11:41:10versions.omeroshares36=3.6.3
11:41:10versions.omeromock36=3.6.3
11:41:10versions.icedb36=3.6.3
11:41:10versions.ipython=1.2.1
11:41:1011:41:10versions.janino=2.5.10
11:41:1011:41:10versions.reportng=1.1.1
11:41:1011:41:10versions.testng=7.5
11:41:10versions.velocity=1.4
11:41:1011:41:10versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:41:10versions.omero-scripts-url=${versions.omero-pypi}
11:41:1011:41:10###
11:41:10### Appended Values
11:41:10###
11:41:1011:41:10## Internal dependencies'
11:41:10+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/11:41:10+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive11:41:10+ echo versions.scripts-prefix=
11:41:10+ echo versions.scripts=merge_ci
11:41:10+ cat /home/omero/workspace/OMERO-push/version.properties
11:41:10+ git commit -a -m 'Add version.properties to etc/omero.properties'
11:41:10[detached HEAD a4715d01e8] Add version.properties to etc/omero.properties
11:41:10 1 file changed, 46 insertions(+), 6 deletions(-)
11:41:10+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
11:41:13To github.com:snoopycrimecop/openmicroscopy.git
11:41:13 + 0d859ccd1b...a4715d01e8 HEAD -> merge_ci (forced update)
11:41:13Finished: SUCCESS
