23:34:57Started by upstream project "Trigger" build number 9123:34:57originally caused by:
23:34:57 Started by timer
23:34:57Running as SYSTEM
23:34:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
23:34:57The recommended git tool is: NONE
23:34:57No credentials specified
23:34:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
23:34:57Fetching changes from the remote Git repository
23:34:57 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
23:34:57Fetching upstream changes from https://github.com/ome/openmicroscopy.git23:34:57 > git --version # timeout=10
23:34:57 > git --version # 'git version 2.52.0'
23:34:57 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:35:05 > git rev-parse origin/develop^{commit} # timeout=10
23:35:05Checking out Revision a49489e0cb2c30833afa413ae796f65478f6a387 (origin/develop)
23:35:05 > git config core.sparsecheckout # timeout=10
23:35:05 > git checkout -f a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=30
23:35:26Commit message: "Merge pull request #6462 from pwalczysko/nfs-test-fix"
23:35:26 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
23:35:26Cleaning workspace
23:35:26 > git rev-parse --verify HEAD # timeout=10
23:35:26Resetting working tree
23:35:26 > git reset --hard # timeout=10
23:35:28 > git clean -fdx # timeout=10
23:35:28Copied 1 artifact from "OMERO-python-superbuild-build" build number 6523:35:28[OMERO-push] $ /bin/bash -xe /tmp/jenkins3305559525639054475.sh
23:35:28+ python3.11 -mvenv venv
23:35:32+ source /home/omero/workspace/OMERO-push/venv/bin/activate
23:35:32++ deactivate nondestructive
23:35:32++ '[' -n '' ']'
23:35:32++ '[' -n '' ']'
23:35:32++ hash -r
23:35:32++ '[' -n '' ']'
23:35:32++ unset VIRTUAL_ENV
23:35:32++ unset VIRTUAL_ENV_PROMPT
23:35:32++ '[' '!' nondestructive = nondestructive ']'
23:35:32++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
23:35:32++ export VIRTUAL_ENV
23:35:32++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:32++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:32++ export PATH
23:35:32++ '[' -n '' ']'
23:35:32++ '[' -z '' ']'
23:35:32++ _OLD_VIRTUAL_PS1=
23:35:32++ PS1='(venv) '
23:35:32++ export PS1
23:35:32++ VIRTUAL_ENV_PROMPT='(venv) '
23:35:32++ export VIRTUAL_ENV_PROMPT
23:35:32++ hash -r
23:35:32+ pip install -U pip
23:35:37Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
23:35:38+ pip install -U scc
23:35:39Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
23:35:39Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
23:35:39Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
23:35:39Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
23:35:39Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
23:35:39Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
23:35:39Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
23:35:39Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
23:35:39Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
23:35:39Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
23:35:39Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
23:35:39Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
23:35:39Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
23:35:39Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
23:35:39Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
23:35:39Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
23:35:39Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
23:35:39Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
23:35:39Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
23:35:39+ test -e src
23:35:39+ cd src
23:35:39++ git config github.user
23:35:39+ user=snoopycrimecop
23:35:39+ scc merge develop --no-ask --reset --shallow -S success-only
23:35:512026-09-09 23:35:51,279 [ scc.merge] INFO Merging Pull Request(s) based on develop
23:35:512026-09-09 23:35:51,279 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
23:35:512026-09-09 23:35:51,279 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
23:35:512026-09-09 23:35:51,280 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
23:35:512026-09-09 23:35:51,280 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
23:35:512026-09-09 23:35:51,280 [ scc.merge] INFO Excluding Pull Request(s) without successful status
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO Repository: ome/openmicroscopy
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO Excluded PRs:
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO Already up to date.
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO Merged PRs:
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
23:36:202026-09-09 23:36:20,776 [ scc.merge] INFO
23:36:20+ cp etc/omero.properties etc/omero.properties.bak
23:36:20+ rm etc/omero.properties
23:36:20+ touch etc/omero.properties
23:36:20++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
23:36:20+ ne=252
23:36:20++ sed -n 1,252p etc/omero.properties.bak
23:36:20+ line='##
23:36:20## omero.properties
23:36:20## ----------------
23:36:20##
23:36:20## DO NOT EDIT!
23:36:20##
23:36:20##
23:36:20## Any of these properties can be altered by using `omero config`. MODIFYING
23:36:20## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:36:20## at compile time!
23:36:20##
23:36:20## For an overview of these properties, see
23:36:20## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:36:20##
23:36:20## Properties marked with "DEVELOPMENT" should not be used in production.
23:36:2023:36:20# Comma separated list of Ice transports available to clients. The default
23:36:20# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:36:20# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:36:20# will prevent all non-encrypted connections to the OMERO server.
23:36:20#
23:36:20# Additionally, there are two experimental values for using websockets:
23:36:20# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:36:20# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:36:20# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:36:20#
23:36:20# Note: When using websockets behind a web server like nginx, additional
23:36:20# configuration may be needed.
23:36:20omero.client.icetransports=ssl,tcp
23:36:2023:36:20# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:36:20# server
23:36:20omero.ports.prefix=
23:36:2023:36:20# The Glacier2 SSL port number to use
23:36:20omero.ports.ssl=4064
23:36:2023:36:20# The Glacier2 TCP port number to use (unencrypted)
23:36:20omero.ports.tcp=4063
23:36:2023:36:20# The Glacier2 WSS port number to use
23:36:20omero.ports.wss=4066
23:36:2023:36:20# The Glacier2 WS port number to use (unencrypted)
23:36:20omero.ports.ws=4065
23:36:2023:36:20# The IceGrid registry port number to use
23:36:20omero.ports.registry=4061
23:36:2023:36:20#############################################
23:36:20## JVM configuration
23:36:20##
23:36:20## Note: changes to the omero.jvmcfg properties
23:36:20## will *not* be reflected in OMERO.server
23:36:20## since they are defined in OMERO.py.
23:36:20#############################################
23:36:20## (For documentation only)
23:36:20# Memory strategy which will be used by default.
23:36:20# Options include: percent, manual
23:36:20omero.jvmcfg.strategy=percent
23:36:2023:36:20## (For documentation only)
23:36:20# Explicit value for the `-Xmx` argument, e.g.
23:36:20# "1g"
23:36:20omero.jvmcfg.heap_size=
23:36:2023:36:20## (For documentation only)
23:36:20# Explicit value for the MaxPermSize argument
23:36:20# to the JVM, e.g. "500M". Ignored for Java8+
23:36:20omero.jvmcfg.perm_gen=
23:36:2023:36:20## (For documentation only)
23:36:20# Toggles on or off heap dumps on OOMs. Default is "off".
23:36:20# The special value "tmp" will create the heap dumps in
23:36:20# your temp directory.
23:36:20omero.jvmcfg.heap_dump=
23:36:2023:36:20## (For documentation only)
23:36:20# Used only by the percent strategy. An integer between 0
23:36:20# and 100 which is the percent of active memory that will
23:36:20# be used by the service.
23:36:20omero.jvmcfg.percent=
23:36:2023:36:20## (For documentation only)
23:36:20# Contains other parameters which should be passed to the
23:36:20# JVM. The value of "append" is treated as if it were on
23:36:20# the command line so will be separated on whitespace.
23:36:20# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:36:20# results in two new arguments.
23:36:20# Note that when using `config set` from the command line
23:36:20# one may need to give a prior `--` option to prevent a value
23:36:20# starting with `-` from already being parsed as an option,
23:36:20# and values may need quoting to prevent whitespace or other
23:36:20# significant characters from being interpreted prematurely.
23:36:2023:36:20omero.jvmcfg.append=
23:36:2023:36:20## (For documentation only)
23:36:20# Manual override of the total system memory that
23:36:20# OMERO will *think* is present on the local OS (MB).
23:36:20# If unset, an attempt will be made to detect the actual
23:36:20# amount: first by using the Python library `psutil` and
23:36:20# if that is not installed, by running a Java tool. If
23:36:20# neither works, 4.0GB is assumed.
23:36:20omero.jvmcfg.system_memory=
23:36:2023:36:20## (For documentation only)
23:36:20# Suggestion for strategies as to the minimum memory
23:36:20# that they will use for calculating JVM settings (MB).
23:36:20omero.jvmcfg.min_system_memory=3414
23:36:2023:36:20## (For documentation only)
23:36:20# Suggestion for strategies as to the maximum memory
23:36:20# that they will use for calculating JVM settings (MB).
23:36:20omero.jvmcfg.max_system_memory=48000
23:36:2023:36:2023:36:20#############################################
23:36:20## Logging properties
23:36:20##
23:36:20## Note: changes to the default omero.logging values in
23:36:20## this file will *not* be reflected in OMERO.server
23:36:20## since they are defined in OMERO.py
23:36:20#############################################
23:36:2023:36:20## (For documentation only)
23:36:20# Relative server directory where the log files should be stored.
23:36:20omero.logging.directory=var/log/
23:36:2023:36:20## (For documentation only)
23:36:20# Whether the server log files should be rotated at a certain time
23:36:20# interval. If true, log files will be rolled over at midnight.
23:36:20# Otherwise, log files will be rolled over at a predetermined size,
23:36:20# see omero.logging.logsize for more information.
23:36:20omero.logging.timedlog=false
23:36:2023:36:20## (For documentation only)
23:36:20# If omero.logging.timedlog is false or unset, specifies the
23:36:20# maximum size of the server log files in bytes above which a
23:36:20# new log file should be created.
23:36:20omero.logging.logsize=5000000
23:36:2023:36:20## (For documentation only)
23:36:20# If omero.logging.timedlog is false or unset, specifies the
23:36:20# number of old server log files that should be kept. Old log
23:36:20# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:36:20omero.logging.lognum=9
23:36:2023:36:20## (For documentation only)
23:36:20# Specifies the threshold for the Python servers log files. Logging messages
23:36:20# which are less severe than this value will be ignored. For a list of
23:36:20# available values, see https://docs.python.org/3/library/logging.html#levels.
23:36:20omero.logging.level=20
23:36:2023:36:20#############################################
23:36:20## Ice overrides
23:36:20##
23:36:20## Though not used directly by OMERO, a number
23:36:20## of properties prefixed with "Ice.*" will
23:36:20## alter the behavior of the OMERO runtime
23:36:20## by configuring the Ice communicators. For a
23:36:20## full listing see:
23:36:20##
23:36:20## http://doc.zeroc.com/display/Ice/Property+Reference23:36:20## For more information see
23:36:20## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:36:20#############################################
23:36:2023:36:20# Disable IPv6 by setting to 0. Only needed in
23:36:20# certain situations.
23:36:20Ice.IPv6=1
23:36:2023:36:20# Glacier2Template IceSSL defaults and overrides,
23:36:20# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
23:36:20# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:36:20# update the corresponding IceSSL. property.
23:36:20omero.glacier2.IceSSL=
23:36:2023:36:20# Glacier2Template SSL maximum allowed protocol (mac bug)
23:36:20omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:36:20# Glacier2Template SSL allowed cipher suites
23:36:20omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:36:20# Glacier2Template SSL verification requirements
23:36:20omero.glacier2.IceSSL.VerifyPeer=0
23:36:20# Glacier2Template SSL allowed protocols
23:36:20omero.glacier2.IceSSL.Protocols=tls1
23:36:2023:36:20# Override the default set of OMERO services.
23:36:20# For example, to run OMERO.server with Blitz and Tables only
23:36:20# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:36:20# set this to ``master:Blitz-0,Tables-0``.
23:36:20# Also use this to distribute OMERO services across multiple nodes,
23:36:20# for example:
23:36:20# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:36:20# See
23:36:20# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:36:20omero.server.nodedescriptors=
23:36:2023:36:20#############################################
23:36:20## Darwin (OS X) specific defaults for templated configuration files only.
23:36:20## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:36:20## file.
23:36:20## Do not set these properties in ``omero config``, instead set the original
23:36:20## ``xxx.yyy`` property
23:36:20#############################################
23:36:20_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:36:2023:36:20## (For documentation only)
23:36:20# Name of the Python module to use when starting the Tables service
23:36:20omero.tables.module=runTables
23:36:2023:36:20#############################################
23:36:20## Server product name for release artifacts
23:36:20#############################################
23:36:20product.name=OMERO.server
23:36:2023:36:20#############################################
23:36:20### Properties below this marker are ignored by
23:36:20### omero.install.config_parser.PropertyParser
23:36:20### END
23:36:2023:36:20#############################################
23:36:20## Library versions
23:36:20#############################################
23:36:20##
23:36:20versions.findbugs=1.2.1
23:36:20versions.ice36=3.6.5
23:36:20versions.ice36_lib=36
23:36:20## internal
23:36:20versions.omeroshares36=3.6.3
23:36:20versions.omeromock36=3.6.3
23:36:20versions.icedb36=3.6.3
23:36:20versions.ipython=1.2.1
23:36:2023:36:20versions.janino=2.5.10
23:36:2023:36:20versions.reportng=1.1.1
23:36:2023:36:20versions.testng=7.5
23:36:20versions.velocity=1.4
23:36:2023:36:20versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:36:20versions.omero-scripts-url=${versions.omero-pypi}
23:36:2023:36:20# hard coded, should not be picked up by scc for now!
23:36:20versions.omero-zarr-pixel-buffer=0.7.0-rc3
23:36:2023:36:20###
23:36:20### Appended Values
23:36:20###
23:36:2023:36:20## Internal dependencies'
23:36:20+ echo '##
23:36:20## omero.properties
23:36:20## ----------------
23:36:20##
23:36:20## DO NOT EDIT!
23:36:20##
23:36:20##
23:36:20## Any of these properties can be altered by using `omero config`. MODIFYING
23:36:20## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:36:20## at compile time!
23:36:20##
23:36:20## For an overview of these properties, see
23:36:20## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:36:20##
23:36:20## Properties marked with "DEVELOPMENT" should not be used in production.
23:36:2023:36:20# Comma separated list of Ice transports available to clients. The default
23:36:20# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:36:20# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:36:20# will prevent all non-encrypted connections to the OMERO server.
23:36:20#
23:36:20# Additionally, there are two experimental values for using websockets:
23:36:20# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:36:20# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:36:20# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:36:20#
23:36:20# Note: When using websockets behind a web server like nginx, additional
23:36:20# configuration may be needed.
23:36:20omero.client.icetransports=ssl,tcp
23:36:2023:36:20# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:36:20# server
23:36:20omero.ports.prefix=
23:36:2023:36:20# The Glacier2 SSL port number to use
23:36:20omero.ports.ssl=4064
23:36:2023:36:20# The Glacier2 TCP port number to use (unencrypted)
23:36:20omero.ports.tcp=4063
23:36:2023:36:20# The Glacier2 WSS port number to use
23:36:20omero.ports.wss=4066
23:36:2023:36:20# The Glacier2 WS port number to use (unencrypted)
23:36:20omero.ports.ws=4065
23:36:2023:36:20# The IceGrid registry port number to use
23:36:20omero.ports.registry=4061
23:36:2023:36:20#############################################
23:36:20## JVM configuration
23:36:20##
23:36:20## Note: changes to the omero.jvmcfg properties
23:36:20## will *not* be reflected in OMERO.server
23:36:20## since they are defined in OMERO.py.
23:36:20#############################################
23:36:20## (For documentation only)
23:36:20# Memory strategy which will be used by default.
23:36:20# Options include: percent, manual
23:36:20omero.jvmcfg.strategy=percent
23:36:2023:36:20## (For documentation only)
23:36:20# Explicit value for the `-Xmx` argument, e.g.
23:36:20# "1g"
23:36:20omero.jvmcfg.heap_size=
23:36:2023:36:20## (For documentation only)
23:36:20# Explicit value for the MaxPermSize argument
23:36:20# to the JVM, e.g. "500M". Ignored for Java8+
23:36:20omero.jvmcfg.perm_gen=
23:36:2023:36:20## (For documentation only)
23:36:20# Toggles on or off heap dumps on OOMs. Default is "off".
23:36:20# The special value "tmp" will create the heap dumps in
23:36:20# your temp directory.
23:36:20omero.jvmcfg.heap_dump=
23:36:2023:36:20## (For documentation only)
23:36:20# Used only by the percent strategy. An integer between 0
23:36:20# and 100 which is the percent of active memory that will
23:36:20# be used by the service.
23:36:20omero.jvmcfg.percent=
23:36:2023:36:20## (For documentation only)
23:36:20# Contains other parameters which should be passed to the
23:36:20# JVM. The value of "append" is treated as if it were on
23:36:20# the command line so will be separated on whitespace.
23:36:20# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:36:20# results in two new arguments.
23:36:20# Note that when using `config set` from the command line
23:36:20# one may need to give a prior `--` option to prevent a value
23:36:20# starting with `-` from already being parsed as an option,
23:36:20# and values may need quoting to prevent whitespace or other
23:36:20# significant characters from being interpreted prematurely.
23:36:2023:36:20omero.jvmcfg.append=
23:36:2023:36:20## (For documentation only)
23:36:20# Manual override of the total system memory that
23:36:20# OMERO will *think* is present on the local OS (MB).
23:36:20# If unset, an attempt will be made to detect the actual
23:36:20# amount: first by using the Python library `psutil` and
23:36:20# if that is not installed, by running a Java tool. If
23:36:20# neither works, 4.0GB is assumed.
23:36:20omero.jvmcfg.system_memory=
23:36:2023:36:20## (For documentation only)
23:36:20# Suggestion for strategies as to the minimum memory
23:36:20# that they will use for calculating JVM settings (MB).
23:36:20omero.jvmcfg.min_system_memory=3414
23:36:2023:36:20## (For documentation only)
23:36:20# Suggestion for strategies as to the maximum memory
23:36:20# that they will use for calculating JVM settings (MB).
23:36:20omero.jvmcfg.max_system_memory=48000
23:36:2023:36:2023:36:20#############################################
23:36:20## Logging properties
23:36:20##
23:36:20## Note: changes to the default omero.logging values in
23:36:20## this file will *not* be reflected in OMERO.server
23:36:20## since they are defined in OMERO.py
23:36:20#############################################
23:36:2023:36:20## (For documentation only)
23:36:20# Relative server directory where the log files should be stored.
23:36:20omero.logging.directory=var/log/
23:36:2023:36:20## (For documentation only)
23:36:20# Whether the server log files should be rotated at a certain time
23:36:20# interval. If true, log files will be rolled over at midnight.
23:36:20# Otherwise, log files will be rolled over at a predetermined size,
23:36:20# see omero.logging.logsize for more information.
23:36:20omero.logging.timedlog=false
23:36:2023:36:20## (For documentation only)
23:36:20# If omero.logging.timedlog is false or unset, specifies the
23:36:20# maximum size of the server log files in bytes above which a
23:36:20# new log file should be created.
23:36:20omero.logging.logsize=5000000
23:36:2023:36:20## (For documentation only)
23:36:20# If omero.logging.timedlog is false or unset, specifies the
23:36:20# number of old server log files that should be kept. Old log
23:36:20# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:36:20omero.logging.lognum=9
23:36:2023:36:20## (For documentation only)
23:36:20# Specifies the threshold for the Python servers log files. Logging messages
23:36:20# which are less severe than this value will be ignored. For a list of
23:36:20# available values, see https://docs.python.org/3/library/logging.html#levels.
23:36:20omero.logging.level=20
23:36:2023:36:20#############################################
23:36:20## Ice overrides
23:36:20##
23:36:20## Though not used directly by OMERO, a number
23:36:20## of properties prefixed with "Ice.*" will
23:36:20## alter the behavior of the OMERO runtime
23:36:20## by configuring the Ice communicators. For a
23:36:20## full listing see:
23:36:20##
23:36:20## http://doc.zeroc.com/display/Ice/Property+Reference23:36:20## For more information see
23:36:20## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:36:20#############################################
23:36:2023:36:20# Disable IPv6 by setting to 0. Only needed in
23:36:20# certain situations.
23:36:20Ice.IPv6=1
23:36:2023:36:20# Glacier2Template IceSSL defaults and overrides,
23:36:20# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
23:36:20# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:36:20# update the corresponding IceSSL. property.
23:36:20omero.glacier2.IceSSL=
23:36:2023:36:20# Glacier2Template SSL maximum allowed protocol (mac bug)
23:36:20omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:36:20# Glacier2Template SSL allowed cipher suites
23:36:20omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:36:20# Glacier2Template SSL verification requirements
23:36:20omero.glacier2.IceSSL.VerifyPeer=0
23:36:20# Glacier2Template SSL allowed protocols
23:36:20omero.glacier2.IceSSL.Protocols=tls1
23:36:2023:36:20# Override the default set of OMERO services.
23:36:20# For example, to run OMERO.server with Blitz and Tables only
23:36:20# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:36:20# set this to ``master:Blitz-0,Tables-0``.
23:36:20# Also use this to distribute OMERO services across multiple nodes,
23:36:20# for example:
23:36:20# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:36:20# See
23:36:20# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:36:20omero.server.nodedescriptors=
23:36:2023:36:20#############################################
23:36:20## Darwin (OS X) specific defaults for templated configuration files only.
23:36:20## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:36:20## file.
23:36:20## Do not set these properties in ``omero config``, instead set the original
23:36:20## ``xxx.yyy`` property
23:36:20#############################################
23:36:20_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:36:2023:36:20## (For documentation only)
23:36:20# Name of the Python module to use when starting the Tables service
23:36:20omero.tables.module=runTables
23:36:2023:36:20#############################################
23:36:20## Server product name for release artifacts
23:36:20#############################################
23:36:20product.name=OMERO.server
23:36:2023:36:20#############################################
23:36:20### Properties below this marker are ignored by
23:36:20### omero.install.config_parser.PropertyParser
23:36:20### END
23:36:2023:36:20#############################################
23:36:20## Library versions
23:36:20#############################################
23:36:20##
23:36:20versions.findbugs=1.2.1
23:36:20versions.ice36=3.6.5
23:36:20versions.ice36_lib=36
23:36:20## internal
23:36:20versions.omeroshares36=3.6.3
23:36:20versions.omeromock36=3.6.3
23:36:20versions.icedb36=3.6.3
23:36:20versions.ipython=1.2.1
23:36:2023:36:20versions.janino=2.5.10
23:36:2023:36:20versions.reportng=1.1.1
23:36:2023:36:20versions.testng=7.5
23:36:20versions.velocity=1.4
23:36:2023:36:20versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:36:20versions.omero-scripts-url=${versions.omero-pypi}
23:36:2023:36:20# hard coded, should not be picked up by scc for now!
23:36:20versions.omero-zarr-pixel-buffer=0.7.0-rc3
23:36:2023:36:20###
23:36:20### Appended Values
23:36:20###
23:36:2023:36:20## Internal dependencies'
23:36:20+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/23:36:20+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive23:36:20+ echo versions.scripts-prefix=
23:36:20+ echo versions.scripts=merge_ci
23:36:20+ cat /home/omero/workspace/OMERO-push/version.properties
23:36:20+ git commit -a -m 'Add version.properties to etc/omero.properties'
23:36:21[detached HEAD 18978195ab] Add version.properties to etc/omero.properties
23:36:21 1 file changed, 46 insertions(+), 6 deletions(-)
23:36:21+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
23:36:25To github.com:snoopycrimecop/openmicroscopy.git
23:36:25 + ab3492c05b...18978195ab HEAD -> merge_ci (forced update)
23:36:25Finished: SUCCESS
