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Started by upstream project "Trigger" build number 222
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision e849d7220735d67c4a474051cc03805d0a822cde (refs/remotes/origin/master)
Commit message: "Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1"
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git
 > git --version # timeout=10
 > git --version # 'git version 2.43.5'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f e849d7220735d67c4a474051cc03805d0a822cde # timeout=10
 > git rev-list --no-walk e849d7220735d67c4a474051cc03805d0a822cde # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-py.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10
 > git config --get submodule.omero-web.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10
 > git config --get submodule.omero-marshal.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10
 > git config --get submodule.omero-dropbox.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10
 > git config --get submodule.omero-scripts.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10
 > git submodule update --init --recursive omero-py # timeout=10
 > git submodule update --init --recursive omero-web # timeout=10
 > git submodule update --init --recursive omero-marshal # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 191
[Pipeline] sh
+ pushd build
~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-python-superbuild-push
+ python3 -m venv build/venv
 > git submodule update --init --recursive omero-dropbox # timeout=10
 > git submodule update --init --recursive omero-scripts # timeout=10
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.2-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.2
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.4.0-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.9.0-py3-none-any.whl.metadata (3.0 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-43.0.1-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached PyGithub-2.4.0-py3-none-any.whl (362 kB)
Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.9.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-43.0.1-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB)
Using cached idna-3.10-py3-none-any.whl (70 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.4.0 PyYAML-6.0.2 certifi-2024.8.30 cffi-1.17.1 charset-normalizer-3.3.2 cryptography-43.0.1 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.9.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-python-superbuild.git
+ BASE_REPO=omero-python-superbuild.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-09-24 00:58:09,338 [  scc.config] DEBUG Found github.token
2024-09-24 00:58:09,343 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-09-24 00:58:09,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:09,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:10,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-09-24 00:58:10,327 [      scc.gh] DEBUG 4364 remaining from 5000 (Reset at 01:09
2024-09-24 00:58:10,329 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:10,341 [     scc.git] DEBUG Check current status
2024-09-24 00:58:10,343 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:10,353 [     scc.git] DEBUG e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-09-24 00:58:10,354 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:10,460 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-09-24 00:58:10,466 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-09-24 00:58:10,475 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-09-24 00:58:10,499 [     scc.git] DEBUG  312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-09-24 00:58:10,505 [     scc.git] DEBUG  da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-09-24 00:58:10,518 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:10,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-09-24 00:58:11,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:11,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:12,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:12,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:12,485 [     scc.git] DEBUG Resetting...
2024-09-24 00:58:12,485 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-09-24 00:58:12,493 [     scc.git] DEBUG HEAD is now at e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-09-24 00:58:12,494 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-09-24 00:58:12,561 [     scc.git] DEBUG Check current status
2024-09-24 00:58:12,561 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:12,569 [     scc.git] DEBUG e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-09-24 00:58:12,569 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:12,621 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-09-24 00:58:12,624 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-09-24 00:58:12,628 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-09-24 00:58:12,632 [     scc.git] DEBUG  312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-09-24 00:58:12,636 [     scc.git] DEBUG  da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-09-24 00:58:12,637 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-09-24 00:58:12,637 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-09-24 00:58:12,638 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-09-24 00:58:12,638 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-09-24 00:58:12,638 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-09-24 00:58:12,638 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:58:12,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None
2024-09-24 00:58:13,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/293 HTTP/1.1" 200 None
2024-09-24 00:58:13,435 [    scc.repo] DEBUG   # ... Include label: dependencies
2024-09-24 00:58:13,435 [    scc.repo] DEBUG   - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-09-24 00:58:13,435 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:58:13,435 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:13,435 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:13,439 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:58:13,444 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:58:13,444 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:58:13,448 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:58:13,452 [     scc.git] DEBUG Already up to date.

2024-09-24 00:58:13,453 [     scc.git] DEBUG Calling 'git fetch origin pull/293/head'
2024-09-24 00:58:13,765 [     scc.git] DEBUG From https://github.com/ome/omero-python-superbuild
2024-09-24 00:58:13,765 [     scc.git] DEBUG  * branch            refs/pull/293/head -> FETCH_HEAD
2024-09-24 00:58:13,773 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:58:13,773 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:13,773 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:13,778 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9660559833988d271074de56e54f2462a7be74e9'
2024-09-24 00:58:13,783 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:13,788 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 293 (Bump omero-py from `749a68a` to `4fd72ef`) 9660559833988d271074de56e54f2462a7be74e9'
2024-09-24 00:58:13,799 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:58:13,802 [     scc.git] DEBUG  omero-py | 2 +-
2024-09-24 00:58:13,802 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2024-09-24 00:58:13,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:13,938 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:58:14,090 [     scc.git] DEBUG Submodule path 'omero-py': checked out '4fd72efaa8cdbec9da98e1d28678af16878a86ba'
2024-09-24 00:58:14,091 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:14,091 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:14,096 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:58:14,382 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f2a1db8cb80> has no local changes
2024-09-24 00:58:14,383 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-python-superbuild
Already up to date.

Merged PRs:
  - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:58:14,419 [     scc.git] DEBUG [detached HEAD b52f4c3] merge master -Dorg -Snone
2024-09-24 00:58:14,420 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-09-24 00:58:14,420 [   scc.merge] INFO  Already up to date.
2024-09-24 00:58:14,420 [   scc.merge] INFO  
2024-09-24 00:58:14,420 [   scc.merge] INFO  Merged PRs:
2024-09-24 00:58:14,420 [   scc.merge] INFO    - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-09-24 00:58:14,420 [   scc.merge] INFO  
2024-09-24 00:58:14,420 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-09-24 00:58:14,420 [     scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'omero-dropbox'
Synchronizing submodule url for 'omero-marshal'
Synchronizing submodule url for 'omero-py'
Synchronizing submodule url for 'omero-scripts'
Synchronizing submodule url for 'omero-web'
Merge all submodules using repository configuration:
base-branch: master

submodules:
  omero-scripts:
    base-branch: develop
2024-09-24 00:58:16,758 [  scc.config] DEBUG Found github.token
2024-09-24 00:58:16,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-09-24 00:58:16,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:17,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:17,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-09-24 00:58:17,692 [      scc.gh] DEBUG 4340 remaining from 5000 (Reset at 01:09
2024-09-24 00:58:17,693 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:17,697 [     scc.git] DEBUG Check current status
2024-09-24 00:58:17,697 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:17,700 [     scc.git] DEBUG b52f4c3 merge master -Dorg -Snone
2024-09-24 00:58:17,701 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:17,741 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-09-24 00:58:17,744 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-09-24 00:58:17,748 [     scc.git] DEBUG  4fd72efaa8cdbec9da98e1d28678af16878a86ba omero-py (v5.19.5-1-g4fd72efa)
2024-09-24 00:58:17,752 [     scc.git] DEBUG  312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-09-24 00:58:17,756 [     scc.git] DEBUG  da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-09-24 00:58:17,761 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:17,762 [     scc.git] DEBUG Reading repository configuration from repositories.yml
2024-09-24 00:58:17,764 [     scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
  omero-scripts:
    base-branch: develop

2024-09-24 00:58:18,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-09-24 00:58:18,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:19,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:19,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:19,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:19,852 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:19,906 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-09-24 00:58:19,906 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:19,911 [     scc.git] DEBUG Check current status
2024-09-24 00:58:19,912 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:19,917 [     scc.git] DEBUG a4307f4 Bump version: 5.7.0 → 5.7.1.dev0
2024-09-24 00:58:19,917 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:19,977 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:20,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None
2024-09-24 00:58:20,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:21,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:21,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:21,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:21,972 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:22,026 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:22,027 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-09-24 00:58:22,027 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:22,031 [     scc.git] DEBUG Check current status
2024-09-24 00:58:22,032 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:22,037 [     scc.git] DEBUG cca4c2f Merge pull request #80 from sbesson/python312
2024-09-24 00:58:22,037 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:22,083 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:22,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None
2024-09-24 00:58:22,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:23,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:23,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:24,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:24,159 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:24,230 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:24,231 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-09-24 00:58:24,231 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:24,237 [     scc.git] DEBUG Check current status
2024-09-24 00:58:24,237 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:24,265 [     scc.git] DEBUG 4fd72efa Bump version: 5.19.5 → 5.19.6.dev0
2024-09-24 00:58:24,266 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:24,332 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:24,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None
2024-09-24 00:58:25,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:25,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:25,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:26,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:26,308 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:26,364 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:26,365 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-09-24 00:58:26,365 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:26,372 [     scc.git] DEBUG Check current status
2024-09-24 00:58:26,373 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:26,393 [     scc.git] DEBUG 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-09-24 00:58:26,393 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:26,445 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:26,446 [     scc.git] DEBUG Repository configuration:
base-branch: develop

2024-09-24 00:58:26,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None
2024-09-24 00:58:27,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:27,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:28,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:28,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:28,467 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:28,511 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:28,512 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-09-24 00:58:28,512 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-09-24 00:58:28,517 [     scc.git] DEBUG Check current status
2024-09-24 00:58:28,517 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:28,541 [     scc.git] DEBUG da5b7d11f Bump version: 5.27.2 → 5.27.3.dev0
2024-09-24 00:58:28,541 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:28,596 [  scc.config] DEBUG Found remote.origin.url
2024-09-24 00:58:28,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None
2024-09-24 00:58:29,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-09-24 00:58:29,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-09-24 00:58:30,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-09-24 00:58:30,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-09-24 00:58:30,644 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:30,698 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:30,699 [     scc.git] DEBUG Resetting...
2024-09-24 00:58:30,699 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-09-24 00:58:30,706 [     scc.git] DEBUG HEAD is now at b52f4c3 merge master -Dorg -Snone
2024-09-24 00:58:30,706 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-09-24 00:58:30,797 [     scc.git] DEBUG Check current status
2024-09-24 00:58:30,797 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-09-24 00:58:30,805 [     scc.git] DEBUG b52f4c3 merge master -Dorg -Snone
2024-09-24 00:58:30,805 [     scc.git] DEBUG Calling 'git submodule status'
2024-09-24 00:58:30,878 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-09-24 00:58:30,882 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-09-24 00:58:30,888 [     scc.git] DEBUG  4fd72efaa8cdbec9da98e1d28678af16878a86ba omero-py (v5.19.5-1-g4fd72efa)
2024-09-24 00:58:30,893 [     scc.git] DEBUG  312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-09-24 00:58:30,898 [     scc.git] DEBUG  da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-09-24 00:58:30,900 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-09-24 00:58:30,900 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-09-24 00:58:30,900 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-09-24 00:58:30,900 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-09-24 00:58:30,900 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-09-24 00:58:30,900 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-09-24 00:58:30,900 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:58:31,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None
2024-09-24 00:58:31,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/293 HTTP/1.1" 200 None
2024-09-24 00:58:31,579 [    scc.repo] DEBUG   # ... Include label: dependencies
2024-09-24 00:58:32,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9 HTTP/1.1" 200 None
2024-09-24 00:58:32,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:33,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9 HTTP/1.1" 200 None
2024-09-24 00:58:33,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/9660559833988d271074de56e54f2462a7be74e9?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:58:33,542 [    scc.repo] DEBUG   - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-09-24 00:58:33,542 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:58:33,542 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:33,543 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:33,553 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:58:33,561 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:58:33,561 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:58:33,571 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:58:33,578 [     scc.git] DEBUG Already up to date.

2024-09-24 00:58:33,579 [     scc.git] DEBUG Calling 'git fetch origin pull/293/head'
2024-09-24 00:58:33,892 [     scc.git] DEBUG From https://github.com/ome/omero-python-superbuild
2024-09-24 00:58:33,892 [     scc.git] DEBUG  * branch            refs/pull/293/head -> FETCH_HEAD
2024-09-24 00:58:33,899 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:58:33,899 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:33,899 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:33,904 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...9660559833988d271074de56e54f2462a7be74e9'
2024-09-24 00:58:33,909 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:33,914 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 293 (Bump omero-py from `749a68a` to `4fd72ef`) 9660559833988d271074de56e54f2462a7be74e9'
2024-09-24 00:58:33,920 [     scc.git] DEBUG Already up to date.
2024-09-24 00:58:34,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:34,073 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:58:34,122 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:34,122 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:34,127 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:58:34,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None
2024-09-24 00:58:35,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None
2024-09-24 00:58:35,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None
2024-09-24 00:58:36,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-09-24 00:58:36,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:37,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-09-24 00:58:37,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:58:37,459 [    scc.repo] DEBUG   - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-09-24 00:58:37,459 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:58:37,459 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-09-24 00:58:37,459 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:37,459 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:37,473 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:58:37,487 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:58:37,488 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:58:37,497 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:58:37,506 [     scc.git] DEBUG Already up to date.

2024-09-24 00:58:37,507 [     scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2024-09-24 00:58:37,824 [     scc.git] DEBUG From https://github.com/ome/omero-dropbox
2024-09-24 00:58:37,824 [     scc.git] DEBUG  * branch            refs/pull/16/head -> FETCH_HEAD
2024-09-24 00:58:37,829 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:58:37,829 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:37,830 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:37,835 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-09-24 00:58:37,840 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:37,845 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsDirectory.py
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsDropBox.py
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsLists.py
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py
2024-09-24 00:58:38,122 [     scc.git] DEBUG Auto-merging src/fsMonitor.py
2024-09-24 00:58:38,123 [     scc.git] DEBUG Auto-merging src/fsMonitorServer.py
2024-09-24 00:58:38,123 [     scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py
2024-09-24 00:58:38,123 [     scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py
2024-09-24 00:58:38,123 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsAbstractPlatformMonitor.py |  6 +++---
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsDirectory.py               | 46 ++++++++++++++++++++--------------------
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsDropBox.py                 | 24 ++++++++++-----------
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsLists.py                   | 14 ++++++------
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsMac-10-5-Monitor.py        | 10 ++++-----
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsMonitor.py                 | 24 ++++++++++-----------
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsMonitorServer.py           | 10 ++++-----
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsPyinotifyMonitor.py        |  8 +++----
2024-09-24 00:58:38,128 [     scc.git] DEBUG  src/fsWin-XP-Monitor.py          | 20 ++++++++---------
2024-09-24 00:58:38,128 [     scc.git] DEBUG  9 files changed, 81 insertions(+), 81 deletions(-)
2024-09-24 00:58:38,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:38,262 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:58:38,302 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:38,302 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:38,307 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:38,348 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:58:38,354 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7c353f70> has no local changes
2024-09-24 00:58:38,354 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:58:38,363 [     scc.git] DEBUG [detached HEAD 491794e] merge master -Dorg -Ssuccess-only
2024-09-24 00:58:38,363 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:38,363 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:58:38,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None
2024-09-24 00:58:39,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None
2024-09-24 00:58:39,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None
2024-09-24 00:58:40,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-09-24 00:58:40,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:41,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-09-24 00:58:41,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:58:41,445 [    scc.repo] DEBUG   - PR 69 will-moore 'Roi encoder allows Shape None'
2024-09-24 00:58:41,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None
2024-09-24 00:58:42,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None
2024-09-24 00:58:42,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None
2024-09-24 00:58:43,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None
2024-09-24 00:58:43,380 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:58:43,380 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-09-24 00:58:43,380 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:43,380 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:43,385 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:58:43,388 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:58:43,389 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:58:43,392 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:58:43,396 [     scc.git] DEBUG Already up to date.

2024-09-24 00:58:43,397 [     scc.git] DEBUG Calling 'git fetch origin pull/69/head'
2024-09-24 00:58:43,790 [     scc.git] DEBUG From https://github.com/ome/omero-marshal
2024-09-24 00:58:43,790 [     scc.git] DEBUG  * branch            refs/pull/69/head -> FETCH_HEAD
2024-09-24 00:58:43,797 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:58:43,798 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:43,798 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:43,803 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-09-24 00:58:43,812 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:43,823 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-09-24 00:58:43,839 [     scc.git] DEBUG Auto-merging tests/unit/conftest.py
2024-09-24 00:58:43,839 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:58:43,843 [     scc.git] DEBUG  omero_marshal/encode/encoders/roi.py | 5 +++--
2024-09-24 00:58:43,843 [     scc.git] DEBUG  tests/unit/conftest.py               | 5 ++++-
2024-09-24 00:58:43,843 [     scc.git] DEBUG  2 files changed, 7 insertions(+), 3 deletions(-)
2024-09-24 00:58:43,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:58:43,983 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:58:44,034 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:58:44,035 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:58:44,039 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:58:44,089 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:58:44,096 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7e65eee0> has no local changes
2024-09-24 00:58:44,096 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:58:44,107 [     scc.git] DEBUG [detached HEAD 70e4891] merge master -Dorg -Ssuccess-only
2024-09-24 00:58:44,108 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:58:44,108 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:58:44,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None
2024-09-24 00:58:45,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/430 HTTP/1.1" 200 None
2024-09-24 00:58:45,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/430/comments HTTP/1.1" 200 None
2024-09-24 00:58:46,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282 HTTP/1.1" 200 None
2024-09-24 00:58:46,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:47,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:58:47,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282 HTTP/1.1" 200 None
2024-09-24 00:58:48,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0882917bd75b7c2c1d18866f6524d180530ca282?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:48,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282 HTTP/1.1" 200 None
2024-09-24 00:58:48,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0882917bd75b7c2c1d18866f6524d180530ca282/status HTTP/1.1" 200 None
2024-09-24 00:58:48,875 [    scc.repo] DEBUG   - PR 430 sbesson 'HdfStorage.read: fix rowNumbers for all start/end values'
2024-09-24 00:58:49,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/429 HTTP/1.1" 200 None
2024-09-24 00:58:49,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/427 HTTP/1.1" 200 None
2024-09-24 00:58:50,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None
2024-09-24 00:58:50,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None
2024-09-24 00:58:51,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-09-24 00:58:51,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:52,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:58:52,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-09-24 00:58:53,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:53,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-09-24 00:58:53,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/status HTTP/1.1" 200 None
2024-09-24 00:58:53,984 [    scc.repo] DEBUG   - PR 408 jburel 'remove deprecated method'
2024-09-24 00:58:54,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None
2024-09-24 00:58:54,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None
2024-09-24 00:58:55,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None
2024-09-24 00:58:55,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:56,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:58:56,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None
2024-09-24 00:58:57,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-09-24 00:58:57,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:58,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:58:58,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-09-24 00:58:59,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:58:59,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-09-24 00:58:59,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/status HTTP/1.1" 200 None
2024-09-24 00:58:59,928 [    scc.repo] DEBUG   - PR 391 joshmoore 'Add jstack command'
2024-09-24 00:59:00,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/387 HTTP/1.1" 200 None
2024-09-24 00:59:00,395 [    scc.repo] DEBUG   # ... Exclude label: exclude
2024-09-24 00:59:00,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337 HTTP/1.1" 200 None
2024-09-24 00:59:01,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337/comments HTTP/1.1" 200 None
2024-09-24 00:59:01,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-09-24 00:59:02,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:02,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-09-24 00:59:03,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0df9ec8000befec36dd85b7ff078ce66603e36a5?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:03,047 [    scc.repo] DEBUG   - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-09-24 00:59:03,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None
2024-09-24 00:59:03,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None
2024-09-24 00:59:04,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-09-24 00:59:04,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:05,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:05,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-09-24 00:59:06,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:06,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-09-24 00:59:07,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/status HTTP/1.1" 200 None
2024-09-24 00:59:07,167 [    scc.repo] DEBUG   - PR 332 jburel 'Build conda'
2024-09-24 00:59:07,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325 HTTP/1.1" 200 None
2024-09-24 00:59:08,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325/comments HTTP/1.1" 200 None
2024-09-24 00:59:08,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None
2024-09-24 00:59:09,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None
2024-09-24 00:59:09,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-09-24 00:59:09,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:10,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-09-24 00:59:10,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/09ae8033d77faf0346255eb9644207e02c98709a?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:10,825 [    scc.repo] DEBUG   - PR 299 joshmoore 'Add parents and children to omero obj'
2024-09-24 00:59:11,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/266 HTTP/1.1" 200 None
2024-09-24 00:59:11,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-09-24 00:59:12,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:12,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-09-24 00:59:13,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/df250605e81b3b5f509b4cddc3186a63d7ba364f?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:13,218 [    scc.repo] DEBUG   - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-09-24 00:59:13,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207 HTTP/1.1" 200 None
2024-09-24 00:59:14,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207/comments HTTP/1.1" 200 None
2024-09-24 00:59:14,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-09-24 00:59:15,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:15,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-09-24 00:59:16,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d68e639b52d3b583d12c65164f3edcd0b813a4bb?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:16,142 [    scc.repo] DEBUG   - PR 207 manics 'BlitzGateway.connect raise on error'
2024-09-24 00:59:16,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None
2024-09-24 00:59:17,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None
2024-09-24 00:59:17,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-09-24 00:59:17,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:18,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-09-24 00:59:18,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:18,886 [    scc.repo] DEBUG   - PR 199 joshmoore 'user: allow setting default group'
2024-09-24 00:59:19,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194 HTTP/1.1" 200 None
2024-09-24 00:59:19,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194/comments HTTP/1.1" 200 None
2024-09-24 00:59:20,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129 HTTP/1.1" 200 None
2024-09-24 00:59:20,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129/comments HTTP/1.1" 200 None
2024-09-24 00:59:20,705 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:59:20,705 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-09-24 00:59:20,705 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:20,705 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:20,710 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:59:20,715 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:59:20,716 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:59:20,721 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:59:20,726 [     scc.git] DEBUG Already up to date.

2024-09-24 00:59:20,726 [     scc.git] DEBUG Calling 'git fetch origin pull/199/head'
2024-09-24 00:59:21,595 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:21,596 [     scc.git] DEBUG  * branch              refs/pull/199/head -> FETCH_HEAD
2024-09-24 00:59:21,601 [     scc.git] DEBUG Calling 'git fetch origin pull/207/head'
2024-09-24 00:59:22,021 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:22,022 [     scc.git] DEBUG  * branch              refs/pull/207/head -> FETCH_HEAD
2024-09-24 00:59:22,027 [     scc.git] DEBUG Calling 'git fetch origin pull/266/head'
2024-09-24 00:59:22,354 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:22,354 [     scc.git] DEBUG  * branch              refs/pull/266/head -> FETCH_HEAD
2024-09-24 00:59:22,359 [     scc.git] DEBUG Calling 'git fetch origin pull/299/head'
2024-09-24 00:59:22,665 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:22,666 [     scc.git] DEBUG  * branch              refs/pull/299/head -> FETCH_HEAD
2024-09-24 00:59:22,671 [     scc.git] DEBUG Calling 'git fetch origin pull/332/head'
2024-09-24 00:59:22,997 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:22,997 [     scc.git] DEBUG  * branch              refs/pull/332/head -> FETCH_HEAD
2024-09-24 00:59:23,003 [     scc.git] DEBUG Calling 'git fetch origin pull/337/head'
2024-09-24 00:59:23,291 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:23,291 [     scc.git] DEBUG  * branch              refs/pull/337/head -> FETCH_HEAD
2024-09-24 00:59:23,296 [     scc.git] DEBUG Calling 'git fetch origin pull/391/head'
2024-09-24 00:59:23,582 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:23,582 [     scc.git] DEBUG  * branch              refs/pull/391/head -> FETCH_HEAD
2024-09-24 00:59:23,587 [     scc.git] DEBUG Calling 'git fetch origin pull/408/head'
2024-09-24 00:59:23,929 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:23,929 [     scc.git] DEBUG  * branch              refs/pull/408/head -> FETCH_HEAD
2024-09-24 00:59:23,935 [     scc.git] DEBUG Calling 'git fetch origin pull/430/head'
2024-09-24 00:59:24,262 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-09-24 00:59:24,262 [     scc.git] DEBUG  * branch              refs/pull/430/head -> FETCH_HEAD
2024-09-24 00:59:24,267 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:59:24,268 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:24,268 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:24,273 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-09-24 00:59:24,285 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:24,291 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-09-24 00:59:24,370 [     scc.git] DEBUG Auto-merging src/omero/cli.py
2024-09-24 00:59:24,370 [     scc.git] DEBUG Auto-merging src/omero/plugins/user.py
2024-09-24 00:59:24,371 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:24,375 [     scc.git] DEBUG  src/omero/cli.py          |  6 ++++++
2024-09-24 00:59:24,375 [     scc.git] DEBUG  src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++---
2024-09-24 00:59:24,375 [     scc.git] DEBUG  2 files changed, 39 insertions(+), 3 deletions(-)
2024-09-24 00:59:24,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:24,511 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-09-24 00:59:24,523 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:24,529 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 207 (BlitzGateway.connect raise on error) d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-09-24 00:59:24,669 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-09-24 00:59:24,669 [     scc.git] DEBUG Auto-merging test/unit/test_gateway.py
2024-09-24 00:59:24,670 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:24,678 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 19 +++++++++++++------
2024-09-24 00:59:24,678 [     scc.git] DEBUG  test/unit/test_gateway.py     | 16 ++++++++++++++++
2024-09-24 00:59:24,678 [     scc.git] DEBUG  2 files changed, 29 insertions(+), 6 deletions(-)
2024-09-24 00:59:24,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:24,900 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-09-24 00:59:24,912 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:24,917 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 266 (errors: use raise_error from cli plugins) df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-09-24 00:59:24,940 [     scc.git] DEBUG Auto-merging src/omero/plugins/search.py
2024-09-24 00:59:24,941 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:24,944 [     scc.git] DEBUG  src/omero/plugins/search.py | 13 +++++++++----
2024-09-24 00:59:24,944 [     scc.git] DEBUG  1 file changed, 9 insertions(+), 4 deletions(-)
2024-09-24 00:59:25,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:25,295 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...09ae8033d77faf0346255eb9644207e02c98709a'
2024-09-24 00:59:25,307 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:25,313 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 299 (Add parents and children to omero obj) 09ae8033d77faf0346255eb9644207e02c98709a'
2024-09-24 00:59:25,408 [     scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2024-09-24 00:59:25,409 [     scc.git] DEBUG Auto-merging test/unit/clitest/test_obj.py
2024-09-24 00:59:25,409 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:25,413 [     scc.git] DEBUG  src/omero/plugins/obj.py      | 69 ++++++++++++++++++++++++++++++++++++++++++-
2024-09-24 00:59:25,413 [     scc.git] DEBUG  test/unit/clitest/test_obj.py |  2 +-
2024-09-24 00:59:25,413 [     scc.git] DEBUG  2 files changed, 69 insertions(+), 2 deletions(-)
2024-09-24 00:59:25,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:25,674 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-09-24 00:59:25,688 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:25,693 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-09-24 00:59:25,721 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:25,724 [     scc.git] DEBUG  .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++
2024-09-24 00:59:25,725 [     scc.git] DEBUG  connect.py                    | 11 +++++++++++
2024-09-24 00:59:25,725 [     scc.git] DEBUG  2 files changed, 48 insertions(+)
2024-09-24 00:59:25,725 [     scc.git] DEBUG  create mode 100644 .github/workflows/install.yml
2024-09-24 00:59:25,725 [     scc.git] DEBUG  create mode 100644 connect.py
2024-09-24 00:59:26,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:26,065 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-09-24 00:59:26,079 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:26,084 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 337 (bulk.yml depth is passed to xargs) 0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-09-24 00:59:26,137 [     scc.git] DEBUG Auto-merging src/omero/plugins/import.py
2024-09-24 00:59:26,138 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:26,143 [     scc.git] DEBUG  src/omero/plugins/import.py | 2 ++
2024-09-24 00:59:26,143 [     scc.git] DEBUG  1 file changed, 2 insertions(+)
2024-09-24 00:59:26,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:26,501 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023'
2024-09-24 00:59:26,514 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:26,519 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023'
2024-09-24 00:59:26,579 [     scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2024-09-24 00:59:26,580 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:26,585 [     scc.git] DEBUG  src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--
2024-09-24 00:59:26,585 [     scc.git] DEBUG  1 file changed, 59 insertions(+), 2 deletions(-)
2024-09-24 00:59:26,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:26,892 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-09-24 00:59:26,904 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:26,908 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-09-24 00:59:27,010 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-09-24 00:59:27,011 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:27,018 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 36 ------------------------------------
2024-09-24 00:59:27,018 [     scc.git] DEBUG  1 file changed, 36 deletions(-)
2024-09-24 00:59:27,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:27,281 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...0882917bd75b7c2c1d18866f6524d180530ca282'
2024-09-24 00:59:27,293 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:27,297 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 430 (HdfStorage.read: fix rowNumbers for all start/end values) 0882917bd75b7c2c1d18866f6524d180530ca282'
2024-09-24 00:59:27,337 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:27,340 [     scc.git] DEBUG  src/omero/hdfstorageV2.py | 9 ++-------
2024-09-24 00:59:27,340 [     scc.git] DEBUG  1 file changed, 2 insertions(+), 7 deletions(-)
2024-09-24 00:59:27,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:27,668 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:59:27,713 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:27,713 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:27,718 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:59:27,756 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:59:27,765 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7b2fff40> has no local changes
2024-09-24 00:59:27,765 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-py
Excluded PRs:
  - PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
  - PR 427 Rdornier 'Add fileset folder creation' (user: Rdornier)
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'
  - PR 430 sbesson 'HdfStorage.read: fix rowNumbers for all start/end values'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:59:27,777 [     scc.git] DEBUG [detached HEAD a78edef9] merge master -Dorg -Ssuccess-only
2024-09-24 00:59:27,777 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:59:27,777 [     scc.git] INFO  Overriding base-branch from master to develop
2024-09-24 00:59:27,778 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:59:28,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2024-09-24 00:59:28,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2024-09-24 00:59:29,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-09-24 00:59:29,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:30,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:30,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-09-24 00:59:31,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:31,201 [    scc.repo] DEBUG   - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-09-24 00:59:31,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None
2024-09-24 00:59:32,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None
2024-09-24 00:59:32,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None
2024-09-24 00:59:33,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None
2024-09-24 00:59:33,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2024-09-24 00:59:34,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2024-09-24 00:59:34,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-09-24 00:59:34,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:35,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-09-24 00:59:35,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2024-09-24 00:59:35,898 [    scc.repo] DEBUG   - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-09-24 00:59:36,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2024-09-24 00:59:36,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2024-09-24 00:59:37,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2024-09-24 00:59:37,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2024-09-24 00:59:37,806 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:59:37,806 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-09-24 00:59:37,806 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:37,806 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:37,811 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2024-09-24 00:59:37,815 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:59:37,816 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2024-09-24 00:59:37,820 [     scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2024-09-24 00:59:37,825 [     scc.git] DEBUG Already up to date.

2024-09-24 00:59:37,825 [     scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2024-09-24 00:59:38,224 [     scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-09-24 00:59:38,224 [     scc.git] DEBUG  * branch            refs/pull/202/head -> FETCH_HEAD
2024-09-24 00:59:38,229 [     scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2024-09-24 00:59:38,815 [     scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-09-24 00:59:38,815 [     scc.git] DEBUG  * branch            refs/pull/223/head -> FETCH_HEAD
2024-09-24 00:59:38,820 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:59:38,820 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:38,820 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:38,825 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-09-24 00:59:38,832 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:38,837 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-09-24 00:59:38,886 [     scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py
2024-09-24 00:59:38,886 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py
2024-09-24 00:59:38,886 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-09-24 00:59:38,887 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-09-24 00:59:38,891 [     scc.git] DEBUG Calling 'git reset --hard 312afbed633613e1f728a1fe9eaac096e54318e0'
2024-09-24 00:59:38,896 [     scc.git] DEBUG HEAD is now at 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-09-24 00:59:39,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:39,029 [     scc.git] DEBUG Calling 'git merge-base 312afbed633613e1f728a1fe9eaac096e54318e0 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-09-24 00:59:39,036 [     scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..312afbed633613e1f728a1fe9eaac096e54318e0'
2024-09-24 00:59:39,042 [     scc.git] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#182](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero/annotation_scripts/KeyVal_to_csv.py

--conflicts

2024-09-24 00:59:39,047 [  scc.config] DEBUG Found github.token
2024-09-24 00:59:39,047 [     scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2024-09-24 00:59:39,047 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-09-24 00:59:39,051 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:39,055 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-09-24 00:59:39,081 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:39,084 [     scc.git] DEBUG  omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2024-09-24 00:59:39,084 [     scc.git] DEBUG  1 file changed, 8 insertions(+), 1 deletion(-)
2024-09-24 00:59:39,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:39,409 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:59:39,448 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:39,449 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:39,453 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:59:39,494 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:59:39,500 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7c353220> has no local changes
2024-09-24 00:59:39,500 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Merged PRs:
  - PR 223 will-moore 'don't attempt ROI stats on big images'

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:59:39,507 [     scc.git] DEBUG [detached HEAD 89b71b8] merge master -Dorg -Ssuccess-only
2024-09-24 00:59:39,507 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:59:39,508 [    scc.repo] DEBUG ## PRs found:
2024-09-24 00:59:39,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None
2024-09-24 00:59:40,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/581 HTTP/1.1" 200 None
2024-09-24 00:59:40,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/581/comments HTTP/1.1" 200 None
2024-09-24 00:59:41,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/580 HTTP/1.1" 200 None
2024-09-24 00:59:41,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc HTTP/1.1" 200 None
2024-09-24 00:59:42,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:42,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:43,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc HTTP/1.1" 200 None
2024-09-24 00:59:43,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:44,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc HTTP/1.1" 200 None
2024-09-24 00:59:44,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc/status HTTP/1.1" 200 None
2024-09-24 00:59:44,559 [    scc.repo] DEBUG   - PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'
2024-09-24 00:59:44,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/568 HTTP/1.1" 200 None
2024-09-24 00:59:45,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/568/comments HTTP/1.1" 200 None
2024-09-24 00:59:45,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None
2024-09-24 00:59:46,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None
2024-09-24 00:59:46,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None
2024-09-24 00:59:47,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None
2024-09-24 00:59:47,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-09-24 00:59:48,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:48,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:49,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-09-24 00:59:49,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:50,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-09-24 00:59:50,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/status HTTP/1.1" 200 None
2024-09-24 00:59:50,468 [    scc.repo] DEBUG   - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-09-24 00:59:50,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None
2024-09-24 00:59:51,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None
2024-09-24 00:59:51,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-09-24 00:59:52,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:52,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:53,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-09-24 00:59:53,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:54,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-09-24 00:59:54,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/status HTTP/1.1" 200 None
2024-09-24 00:59:54,571 [    scc.repo] DEBUG   - PR 527 will-moore 'Add some initial CSP settings to test'
2024-09-24 00:59:54,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None
2024-09-24 00:59:55,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None
2024-09-24 00:59:55,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None
2024-09-24 00:59:56,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-09-24 00:59:56,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-09-24 00:59:56,899 [    scc.repo] DEBUG ## Branches found:
2024-09-24 00:59:56,899 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-09-24 00:59:56,899 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:56,899 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:56,905 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-09-24 00:59:56,909 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-09-24 00:59:56,909 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-09-24 00:59:56,914 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-09-24 00:59:56,920 [     scc.git] DEBUG Already up to date.

2024-09-24 00:59:56,920 [     scc.git] DEBUG Calling 'git fetch origin pull/527/head'
2024-09-24 00:59:57,686 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-09-24 00:59:57,686 [     scc.git] DEBUG  * branch                refs/pull/527/head -> FETCH_HEAD
2024-09-24 00:59:57,691 [     scc.git] DEBUG Calling 'git fetch origin pull/534/head'
2024-09-24 00:59:58,003 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-09-24 00:59:58,003 [     scc.git] DEBUG  * branch                refs/pull/534/head -> FETCH_HEAD
2024-09-24 00:59:58,008 [     scc.git] DEBUG Calling 'git fetch origin pull/580/head'
2024-09-24 00:59:58,330 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-09-24 00:59:58,330 [     scc.git] DEBUG  * branch                refs/pull/580/head -> FETCH_HEAD
2024-09-24 00:59:58,336 [     scc.git] DEBUG ## Unique users: []
2024-09-24 00:59:58,336 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:58,336 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:58,341 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-09-24 00:59:58,348 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:58,351 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-09-24 00:59:58,444 [     scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-09-24 00:59:58,445 [     scc.git] DEBUG Auto-merging setup.py
2024-09-24 00:59:58,446 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:58,450 [     scc.git] DEBUG  omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++-
2024-09-24 00:59:58,450 [     scc.git] DEBUG  setup.py             |  1 +
2024-09-24 00:59:58,450 [     scc.git] DEBUG  2 files changed, 42 insertions(+), 1 deletion(-)
2024-09-24 00:59:58,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:58,591 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-09-24 00:59:58,599 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:58,605 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-09-24 00:59:58,696 [     scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py
2024-09-24 00:59:58,696 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-09-24 00:59:58,697 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:58,701 [     scc.git] DEBUG  omeroweb/webclient/webclient_gateway.py | 2 +-
2024-09-24 00:59:58,701 [     scc.git] DEBUG  omeroweb/webgateway/marshal.py          | 4 ++--
2024-09-24 00:59:58,701 [     scc.git] DEBUG  2 files changed, 3 insertions(+), 3 deletions(-)
2024-09-24 00:59:58,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:58,969 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc'
2024-09-24 00:59:58,978 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:58,982 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 580 (omeroweb.webgateway.obj_id_bitmask: handle empty query results) 1c8ad8d1dd0e0fd1abaf6a3d74c439d73a2ffacc'
2024-09-24 00:59:59,045 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-09-24 00:59:59,050 [     scc.git] DEBUG  omeroweb/webgateway/views.py | 6 ++++++
2024-09-24 00:59:59,050 [     scc.git] DEBUG  1 file changed, 6 insertions(+)
2024-09-24 00:59:59,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:59,350 [     scc.git] DEBUG Calling 'git submodule update'
2024-09-24 00:59:59,399 [     scc.git] DEBUG Get sha1 of %s
2024-09-24 00:59:59,400 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-09-24 00:59:59,406 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:59:59,447 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 00:59:59,457 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7a254b20> has no local changes
2024-09-24 00:59:59,457 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-web
Excluded PRs:
  - PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
  - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 00:59:59,470 [     scc.git] DEBUG [detached HEAD 5627ea844] merge master -Dorg -Ssuccess-only
2024-09-24 00:59:59,470 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 00:59:59,471 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-09-24 00:59:59,524 [  scc.config] DEBUG Found submodule.omero-dropbox.url
2024-09-24 00:59:59,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 00:59:59,740 [  scc.config] DEBUG Found submodule.omero-marshal.url
2024-09-24 01:00:00,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 01:00:00,138 [  scc.config] DEBUG Found submodule.omero-py.url
2024-09-24 01:00:00,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 01:00:00,527 [  scc.config] DEBUG Found submodule.omero-scripts.url
2024-09-24 01:00:00,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 01:00:00,920 [  scc.config] DEBUG Found submodule.omero-web.url
2024-09-24 01:00:01,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-09-24 01:00:01,299 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-09-24 01:00:01,327 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fcd7c5ebb80> has local changes
2024-09-24 01:00:01,327 [     scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-python-superbuild
Already up to date.

Merged PRs:
  - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'

Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Repository: ome/omero-py
Excluded PRs:
  - PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
  - PR 427 Rdornier 'Add fileset folder creation' (user: Rdornier)
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'
  - PR 430 sbesson 'HdfStorage.read: fix rowNumbers for all start/end values'

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Merged PRs:
  - PR 223 will-moore 'don't attempt ROI stats on big images'

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Repository: ome/omero-web
Excluded PRs:
  - PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
  - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'

Generated by OMERO-python-superbuild-push#182 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/182/)'
2024-09-24 01:00:01,337 [     scc.git] DEBUG [detached HEAD e57eeca] merge master -Dorg -Ssuccess-only
2024-09-24 01:00:01,338 [     scc.git] DEBUG  6 files changed, 10 insertions(+), 10 deletions(-)
2024-09-24 01:00:01,338 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-09-24 01:00:01,338 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,338 [   scc.merge] INFO  
2024-09-24 01:00:01,338 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,338 [   scc.merge] INFO    - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-09-24 01:00:01,338 [   scc.merge] INFO  
2024-09-24 01:00:01,338 [   scc.merge] INFO  Repository: ome/omero-dropbox
2024-09-24 01:00:01,338 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,338 [   scc.merge] INFO  
2024-09-24 01:00:01,338 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,338 [   scc.merge] INFO    - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-09-24 01:00:01,338 [   scc.merge] INFO  
2024-09-24 01:00:01,338 [   scc.merge] INFO  Repository: ome/omero-marshal
2024-09-24 01:00:01,338 [   scc.merge] INFO  Excluded PRs:
2024-09-24 01:00:01,338 [   scc.merge] INFO    - PR 34 chris-allan 'Initial support for Event' (exclude comment)
2024-09-24 01:00:01,338 [   scc.merge] INFO    - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
2024-09-24 01:00:01,338 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,338 [   scc.merge] INFO  
2024-09-24 01:00:01,338 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 69 will-moore 'Roi encoder allows Shape None'
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Repository: ome/omero-py
2024-09-24 01:00:01,339 [   scc.merge] INFO  Excluded PRs:
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 427 Rdornier 'Add fileset folder creation' (user: Rdornier)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 387 will-moore 'Numpy pixels type' (label: exclude)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
2024-09-24 01:00:01,339 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 199 joshmoore 'user: allow setting default group'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 207 manics 'BlitzGateway.connect raise on error'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 299 joshmoore 'Add parents and children to omero obj'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 332 jburel 'Build conda'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 391 joshmoore 'Add jstack command'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 408 jburel 'remove deprecated method'
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 430 sbesson 'HdfStorage.read: fix rowNumbers for all start/end values'
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Repository: ome/omero-scripts
2024-09-24 01:00:01,339 [   scc.merge] INFO  Excluded PRs:
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2024-09-24 01:00:01,339 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Conflicting PRs (not included):
2024-09-24 01:00:01,339 [   scc.merge] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-09-24 01:00:01,339 [   scc.merge] INFO  
2024-09-24 01:00:01,339 [   scc.merge] INFO  Repository: ome/omero-web
2024-09-24 01:00:01,340 [   scc.merge] INFO  Excluded PRs:
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 535 will-moore 'Initial working browser history' (stage: draft)
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
2024-09-24 01:00:01,340 [   scc.merge] INFO  Already up to date.
2024-09-24 01:00:01,340 [   scc.merge] INFO  
2024-09-24 01:00:01,340 [   scc.merge] INFO  Merged PRs:
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 527 will-moore 'Add some initial CSP settings to test'
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-09-24 01:00:01,340 [   scc.merge] INFO    - PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'
2024-09-24 01:00:01,340 [   scc.merge] INFO  
2024-09-24 01:00:01,340 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-09-24 01:00:01,340 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,345 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-09-24 01:00:01,345 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,350 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 01:00:01,350 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-09-24 01:00:01,350 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,354 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 01:00:01,354 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-09-24 01:00:01,354 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,359 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 01:00:01,359 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-09-24 01:00:01,359 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,363 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-09-24 01:00:01,363 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-09-24 01:00:01,363 [     scc.git] DEBUG Calling 'git remote'
2024-09-24 01:00:01,367 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
Update component versions
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
Commit all component version changes
Entering 'omero-dropbox'
Entering 'omero-marshal'
Entering 'omero-py'
Entering 'omero-scripts'
Entering 'omero-web'
Entering 'omero-dropbox'
HEAD detached from a4307f4
nothing to commit, working tree clean
Entering 'omero-marshal'
HEAD detached from cca4c2f
nothing to commit, working tree clean
Entering 'omero-py'
HEAD detached from 4fd72efa
nothing to commit, working tree clean
Entering 'omero-scripts'
HEAD detached from 312afbe
nothing to commit, working tree clean
Entering 'omero-web'
HEAD detached from da5b7d11f
nothing to commit, working tree clean
HEAD detached from e849d72
nothing to commit, working tree clean
2024-09-24 01:00:29,191 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS