Console Output
+ export BASE_REPO=omero-python-superbuild.git
+ BASE_REPO=omero-python-superbuild.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-11-03 00:32:58,316 [ scc.config] DEBUG Found github.token
2024-11-03 00:32:58,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-11-03 00:32:58,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:32:58,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:32:59,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-11-03 00:32:59,291 [ scc.gh] DEBUG 4333 remaining from 5000 (Reset at 00:11
2024-11-03 00:32:59,292 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:32:59,297 [ scc.git] DEBUG Check current status
2024-11-03 00:32:59,297 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:32:59,301 [ scc.git] DEBUG e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-11-03 00:32:59,301 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:32:59,345 [ scc.git] DEBUG a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-11-03 00:32:59,348 [ scc.git] DEBUG cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-11-03 00:32:59,352 [ scc.git] DEBUG 749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-11-03 00:32:59,356 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-11-03 00:32:59,360 [ scc.git] DEBUG da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-11-03 00:32:59,366 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:32:59,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-11-03 00:33:00,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:00,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:00,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:01,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:01,384 [ scc.git] DEBUG Resetting...
2024-11-03 00:33:01,384 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-11-03 00:33:01,390 [ scc.git] DEBUG HEAD is now at e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-11-03 00:33:01,391 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-11-03 00:33:01,446 [ scc.git] DEBUG Check current status
2024-11-03 00:33:01,446 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:01,450 [ scc.git] DEBUG e849d72 Merge pull request #292 from ome/dependabot/submodules/omero-web-da5b7d1
2024-11-03 00:33:01,451 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:01,493 [ scc.git] DEBUG a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-11-03 00:33:01,496 [ scc.git] DEBUG cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-11-03 00:33:01,499 [ scc.git] DEBUG 749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-11-03 00:33:01,503 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-11-03 00:33:01,507 [ scc.git] DEBUG da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-11-03 00:33:01,507 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-11-03 00:33:01,508 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-11-03 00:33:01,508 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-11-03 00:33:01,508 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-11-03 00:33:01,508 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-11-03 00:33:01,508 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:33:01,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None
2024-11-03 00:33:02,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/293 HTTP/1.1" 200 None
2024-11-03 00:33:02,312 [ scc.repo] DEBUG # ... Include label: dependencies
2024-11-03 00:33:02,312 [ scc.repo] DEBUG - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-11-03 00:33:02,313 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:33:02,313 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:02,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:02,317 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:33:02,321 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:33:02,322 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:33:02,327 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:33:02,331 [ scc.git] DEBUG Already up to date.
2024-11-03 00:33:02,331 [ scc.git] DEBUG Calling 'git fetch origin pull/293/head'
2024-11-03 00:33:02,656 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild
2024-11-03 00:33:02,657 [ scc.git] DEBUG * branch refs/pull/293/head -> FETCH_HEAD
2024-11-03 00:33:02,662 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:33:02,662 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:02,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:02,666 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9660559833988d271074de56e54f2462a7be74e9'
2024-11-03 00:33:02,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:02,686 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 293 (Bump omero-py from `749a68a` to `4fd72ef`) 9660559833988d271074de56e54f2462a7be74e9'
2024-11-03 00:33:02,696 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:33:02,698 [ scc.git] DEBUG omero-py | 2 +-
2024-11-03 00:33:02,698 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2024-11-03 00:33:02,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:02,833 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:33:03,207 [ scc.git] DEBUG Submodule path 'omero-py': checked out '4fd72efaa8cdbec9da98e1d28678af16878a86ba'
2024-11-03 00:33:03,208 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:03,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:03,214 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:33:03,612 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff7c21ab8b0> has no local changes
2024-11-03 00:33:03,612 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-python-superbuild
Already up to date.
Merged PRs:
- PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:33:03,640 [ scc.git] DEBUG [detached HEAD 947be9e] merge master -Dorg -Snone
2024-11-03 00:33:03,641 [ scc.merge] INFO Repository: ome/omero-python-superbuild
2024-11-03 00:33:03,641 [ scc.merge] INFO Already up to date.
2024-11-03 00:33:03,641 [ scc.merge] INFO
2024-11-03 00:33:03,641 [ scc.merge] INFO Merged PRs:
2024-11-03 00:33:03,641 [ scc.merge] INFO - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-11-03 00:33:03,641 [ scc.merge] INFO
2024-11-03 00:33:03,641 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-11-03 00:33:03,641 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'omero-dropbox'
Synchronizing submodule url for 'omero-marshal'
Synchronizing submodule url for 'omero-py'
Synchronizing submodule url for 'omero-scripts'
Synchronizing submodule url for 'omero-web'
Submodule path 'omero-web': checked out '213bb61adc23aed4a750f2a83dc94b7efdb22cee'
Merge all submodules using repository configuration:
base-branch: master
submodules:
omero-scripts:
base-branch: develop
2024-11-03 00:33:05,985 [ scc.config] DEBUG Found github.token
2024-11-03 00:33:05,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-11-03 00:33:06,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:06,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:06,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-11-03 00:33:06,930 [ scc.gh] DEBUG 4323 remaining from 5000 (Reset at 00:11
2024-11-03 00:33:06,931 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:06,935 [ scc.git] DEBUG Check current status
2024-11-03 00:33:06,935 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:06,938 [ scc.git] DEBUG 947be9e merge master -Dorg -Snone
2024-11-03 00:33:06,939 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:06,981 [ scc.git] DEBUG a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-11-03 00:33:06,985 [ scc.git] DEBUG cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-11-03 00:33:06,989 [ scc.git] DEBUG 4fd72efaa8cdbec9da98e1d28678af16878a86ba omero-py (v5.19.5-1-g4fd72efa)
2024-11-03 00:33:06,992 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-11-03 00:33:06,996 [ scc.git] DEBUG +213bb61adc23aed4a750f2a83dc94b7efdb22cee omero-web (v5.27.2-7-g213bb61ad)
2024-11-03 00:33:07,000 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:07,001 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2024-11-03 00:33:07,002 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-scripts:
base-branch: develop
2024-11-03 00:33:07,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-11-03 00:33:07,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:08,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:08,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:09,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:09,071 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:09,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-11-03 00:33:09,120 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:09,123 [ scc.git] DEBUG Check current status
2024-11-03 00:33:09,124 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:09,127 [ scc.git] DEBUG a4307f4 Bump version: 5.7.0 → 5.7.1.dev0
2024-11-03 00:33:09,128 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:09,174 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:09,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None
2024-11-03 00:33:09,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:10,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:10,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:11,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:11,171 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:11,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:11,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-11-03 00:33:11,209 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:11,213 [ scc.git] DEBUG Check current status
2024-11-03 00:33:11,213 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:11,217 [ scc.git] DEBUG cca4c2f Merge pull request #80 from sbesson/python312
2024-11-03 00:33:11,217 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:11,258 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:11,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None
2024-11-03 00:33:12,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:12,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:12,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:13,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:13,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:13,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:13,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-11-03 00:33:13,381 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:13,387 [ scc.git] DEBUG Check current status
2024-11-03 00:33:13,388 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:13,398 [ scc.git] DEBUG 4fd72efa Bump version: 5.19.5 → 5.19.6.dev0
2024-11-03 00:33:13,399 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:13,443 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:13,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None
2024-11-03 00:33:14,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:14,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:14,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:15,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:15,383 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:15,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:15,424 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-11-03 00:33:15,424 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:15,428 [ scc.git] DEBUG Check current status
2024-11-03 00:33:15,428 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:15,432 [ scc.git] DEBUG 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-11-03 00:33:15,432 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:15,476 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:15,477 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2024-11-03 00:33:15,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None
2024-11-03 00:33:16,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:16,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:17,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:17,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:17,485 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:17,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:17,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-11-03 00:33:17,528 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-03 00:33:17,533 [ scc.git] DEBUG Check current status
2024-11-03 00:33:17,533 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:17,539 [ scc.git] DEBUG 213bb61ad Merge pull request #580 from sbesson/obj_id_mask_no_match
2024-11-03 00:33:17,539 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:17,584 [ scc.config] DEBUG Found remote.origin.url
2024-11-03 00:33:17,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None
2024-11-03 00:33:19,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-03 00:33:19,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-03 00:33:20,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-03 00:33:20,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-03 00:33:20,631 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:20,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:20,676 [ scc.git] DEBUG Resetting...
2024-11-03 00:33:20,676 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-11-03 00:33:20,682 [ scc.git] DEBUG HEAD is now at 947be9e merge master -Dorg -Snone
2024-11-03 00:33:20,682 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-11-03 00:33:20,750 [ scc.git] DEBUG Submodule path 'omero-web': checked out 'da5b7d11f5375f024d3881db2dcc63899b4087da'
2024-11-03 00:33:20,754 [ scc.git] DEBUG Check current status
2024-11-03 00:33:20,754 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-03 00:33:20,759 [ scc.git] DEBUG 947be9e merge master -Dorg -Snone
2024-11-03 00:33:20,759 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-03 00:33:20,802 [ scc.git] DEBUG a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-11-03 00:33:20,805 [ scc.git] DEBUG cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-11-03 00:33:20,809 [ scc.git] DEBUG 4fd72efaa8cdbec9da98e1d28678af16878a86ba omero-py (v5.19.5-1-g4fd72efa)
2024-11-03 00:33:20,813 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 omero-scripts (v5.8.3-1-g312afbe)
2024-11-03 00:33:20,816 [ scc.git] DEBUG da5b7d11f5375f024d3881db2dcc63899b4087da omero-web (v5.27.2-1-gda5b7d11f)
2024-11-03 00:33:20,817 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-11-03 00:33:20,817 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-11-03 00:33:20,818 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-11-03 00:33:20,818 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-11-03 00:33:20,818 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-11-03 00:33:20,818 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2024-11-03 00:33:20,818 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:33:21,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None
2024-11-03 00:33:21,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/293 HTTP/1.1" 200 None
2024-11-03 00:33:21,517 [ scc.repo] DEBUG # ... Include label: dependencies
2024-11-03 00:33:22,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9 HTTP/1.1" 200 None
2024-11-03 00:33:22,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:23,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/9660559833988d271074de56e54f2462a7be74e9 HTTP/1.1" 200 None
2024-11-03 00:33:23,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/9660559833988d271074de56e54f2462a7be74e9?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:33:23,408 [ scc.repo] DEBUG - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-11-03 00:33:23,408 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:33:23,408 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:23,408 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:23,414 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:33:23,421 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:33:23,421 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:33:23,426 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:33:23,431 [ scc.git] DEBUG Already up to date.
2024-11-03 00:33:23,431 [ scc.git] DEBUG Calling 'git fetch origin pull/293/head'
2024-11-03 00:33:23,747 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild
2024-11-03 00:33:23,747 [ scc.git] DEBUG * branch refs/pull/293/head -> FETCH_HEAD
2024-11-03 00:33:23,752 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:33:23,752 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:23,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:23,758 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9660559833988d271074de56e54f2462a7be74e9'
2024-11-03 00:33:23,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:23,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 293 (Bump omero-py from `749a68a` to `4fd72ef`) 9660559833988d271074de56e54f2462a7be74e9'
2024-11-03 00:33:23,770 [ scc.git] DEBUG Already up to date.
2024-11-03 00:33:23,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:23,935 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:33:23,976 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:23,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:23,982 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:33:24,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None
2024-11-03 00:33:24,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None
2024-11-03 00:33:25,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None
2024-11-03 00:33:25,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-11-03 00:33:26,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:26,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-11-03 00:33:27,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:33:27,179 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-11-03 00:33:27,179 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:33:27,179 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-11-03 00:33:27,179 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:27,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:27,184 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:33:27,189 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:33:27,189 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:33:27,194 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:33:27,200 [ scc.git] DEBUG Already up to date.
2024-11-03 00:33:27,200 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2024-11-03 00:33:27,510 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox
2024-11-03 00:33:27,510 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2024-11-03 00:33:27,515 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:33:27,516 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:27,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:27,521 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-11-03 00:33:27,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:27,531 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsDirectory.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsDropBox.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsLists.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsMonitor.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py
2024-11-03 00:33:28,078 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:33:28,082 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++---
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++--------------------
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++-----------
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++-----
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++-----------
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++-----
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++----
2024-11-03 00:33:28,083 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++---------
2024-11-03 00:33:28,083 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-)
2024-11-03 00:33:28,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:28,213 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:33:28,255 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:28,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:28,260 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:28,300 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:33:28,305 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a1a399a0> has no local changes
2024-11-03 00:33:28,306 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-dropbox
Already up to date.
Merged PRs:
- PR 16 joshmoore 'Review all instances of whitelist/blacklist'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:33:28,313 [ scc.git] DEBUG [detached HEAD 232145f] merge master -Dorg -Ssuccess-only
2024-11-03 00:33:28,314 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:28,314 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:33:28,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None
2024-11-03 00:33:29,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None
2024-11-03 00:33:29,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None
2024-11-03 00:33:30,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-11-03 00:33:30,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:31,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-11-03 00:33:31,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:33:31,433 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None'
2024-11-03 00:33:31,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None
2024-11-03 00:33:32,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None
2024-11-03 00:33:32,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None
2024-11-03 00:33:33,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None
2024-11-03 00:33:33,174 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:33:33,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-11-03 00:33:33,174 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:33,174 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:33,180 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:33:33,184 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:33:33,184 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:33:33,188 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:33:33,192 [ scc.git] DEBUG Already up to date.
2024-11-03 00:33:33,192 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head'
2024-11-03 00:33:33,550 [ scc.git] DEBUG From https://github.com/ome/omero-marshal
2024-11-03 00:33:33,551 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD
2024-11-03 00:33:33,555 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:33:33,556 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:33,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:33,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-11-03 00:33:33,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:33,571 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-11-03 00:33:33,582 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py
2024-11-03 00:33:33,588 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:33:33,592 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++--
2024-11-03 00:33:33,592 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++-
2024-11-03 00:33:33,592 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-)
2024-11-03 00:33:33,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:33:33,722 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:33:33,763 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:33:33,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:33:33,768 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:33:33,810 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:33:33,816 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a19d2820> has no local changes
2024-11-03 00:33:33,816 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-marshal
Excluded PRs:
- PR 34 chris-allan 'Initial support for Event' (exclude comment)
- PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.
Merged PRs:
- PR 69 will-moore 'Roi encoder allows Shape None'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:33:33,824 [ scc.git] DEBUG [detached HEAD 3005467] merge master -Dorg -Ssuccess-only
2024-11-03 00:33:33,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:33:33,825 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:33:34,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None
2024-11-03 00:33:34,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/431 HTTP/1.1" 200 None
2024-11-03 00:33:35,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953 HTTP/1.1" 200 None
2024-11-03 00:33:35,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:36,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:36,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953 HTTP/1.1" 200 None
2024-11-03 00:33:37,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0e500ec05bf9227b66b28a480b40e0936241d953?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:37,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953 HTTP/1.1" 200 None
2024-11-03 00:33:38,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0e500ec05bf9227b66b28a480b40e0936241d953/status HTTP/1.1" 200 None
2024-11-03 00:33:38,277 [ scc.repo] DEBUG - PR 431 sbesson 'omero.HdfStorage.update: add size check on data.rowNumbers'
2024-11-03 00:33:38,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/429 HTTP/1.1" 200 None
2024-11-03 00:33:39,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/427 HTTP/1.1" 200 None
2024-11-03 00:33:39,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/427/comments HTTP/1.1" 200 None
2024-11-03 00:33:39,647 [ scc.repo] DEBUG # ... Include label: include
2024-11-03 00:33:40,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1 HTTP/1.1" 200 None
2024-11-03 00:33:40,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:41,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:41,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1 HTTP/1.1" 200 None
2024-11-03 00:33:41,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:42,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1 HTTP/1.1" 200 None
2024-11-03 00:33:42,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1/status HTTP/1.1" 200 None
2024-11-03 00:33:42,792 [ scc.repo] DEBUG - PR 427 Rdornier 'Add fileset folder creation'
2024-11-03 00:33:43,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None
2024-11-03 00:33:43,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None
2024-11-03 00:33:44,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-11-03 00:33:44,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:45,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:45,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-11-03 00:33:45,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:46,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-11-03 00:33:46,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/status HTTP/1.1" 200 None
2024-11-03 00:33:46,768 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method'
2024-11-03 00:33:47,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None
2024-11-03 00:33:47,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None
2024-11-03 00:33:48,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None
2024-11-03 00:33:48,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:48,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:49,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None
2024-11-03 00:33:49,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-11-03 00:33:50,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:50,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:51,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-11-03 00:33:51,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:52,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-11-03 00:33:52,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/status HTTP/1.1" 200 None
2024-11-03 00:33:52,433 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command'
2024-11-03 00:33:52,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/387 HTTP/1.1" 200 None
2024-11-03 00:33:52,878 [ scc.repo] DEBUG # ... Exclude label: exclude
2024-11-03 00:33:53,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337 HTTP/1.1" 200 None
2024-11-03 00:33:53,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337/comments HTTP/1.1" 200 None
2024-11-03 00:33:54,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-11-03 00:33:54,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:55,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-11-03 00:33:55,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0df9ec8000befec36dd85b7ff078ce66603e36a5?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:33:55,592 [ scc.repo] DEBUG - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-11-03 00:33:56,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None
2024-11-03 00:33:56,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None
2024-11-03 00:33:56,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-11-03 00:33:57,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:57,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:33:58,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-11-03 00:33:58,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:33:59,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-11-03 00:33:59,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/status HTTP/1.1" 200 None
2024-11-03 00:33:59,640 [ scc.repo] DEBUG - PR 332 jburel 'Build conda'
2024-11-03 00:34:00,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325 HTTP/1.1" 200 None
2024-11-03 00:34:00,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325/comments HTTP/1.1" 200 None
2024-11-03 00:34:01,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None
2024-11-03 00:34:01,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None
2024-11-03 00:34:01,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-11-03 00:34:02,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:02,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-11-03 00:34:03,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/09ae8033d77faf0346255eb9644207e02c98709a?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:03,295 [ scc.repo] DEBUG - PR 299 joshmoore 'Add parents and children to omero obj'
2024-11-03 00:34:03,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/266 HTTP/1.1" 200 None
2024-11-03 00:34:04,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-11-03 00:34:04,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:05,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-11-03 00:34:05,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/df250605e81b3b5f509b4cddc3186a63d7ba364f?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:05,567 [ scc.repo] DEBUG - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-11-03 00:34:05,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207 HTTP/1.1" 200 None
2024-11-03 00:34:06,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207/comments HTTP/1.1" 200 None
2024-11-03 00:34:06,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-11-03 00:34:07,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:07,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-11-03 00:34:08,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d68e639b52d3b583d12c65164f3edcd0b813a4bb?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:08,255 [ scc.repo] DEBUG - PR 207 manics 'BlitzGateway.connect raise on error'
2024-11-03 00:34:08,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None
2024-11-03 00:34:09,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None
2024-11-03 00:34:09,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-11-03 00:34:10,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:10,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-11-03 00:34:11,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:11,026 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group'
2024-11-03 00:34:11,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194 HTTP/1.1" 200 None
2024-11-03 00:34:11,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194/comments HTTP/1.1" 200 None
2024-11-03 00:34:12,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129 HTTP/1.1" 200 None
2024-11-03 00:34:12,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129/comments HTTP/1.1" 200 None
2024-11-03 00:34:12,870 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:34:12,870 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-11-03 00:34:12,870 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:12,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:12,877 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:34:12,881 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:34:12,882 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:34:12,886 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:34:12,892 [ scc.git] DEBUG Already up to date.
2024-11-03 00:34:12,892 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head'
2024-11-03 00:34:14,037 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:14,037 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD
2024-11-03 00:34:14,043 [ scc.git] DEBUG Calling 'git fetch origin pull/207/head'
2024-11-03 00:34:14,347 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:14,347 [ scc.git] DEBUG * branch refs/pull/207/head -> FETCH_HEAD
2024-11-03 00:34:14,352 [ scc.git] DEBUG Calling 'git fetch origin pull/266/head'
2024-11-03 00:34:14,681 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:14,681 [ scc.git] DEBUG * branch refs/pull/266/head -> FETCH_HEAD
2024-11-03 00:34:14,688 [ scc.git] DEBUG Calling 'git fetch origin pull/299/head'
2024-11-03 00:34:15,114 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:15,114 [ scc.git] DEBUG * branch refs/pull/299/head -> FETCH_HEAD
2024-11-03 00:34:15,119 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head'
2024-11-03 00:34:15,536 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:15,537 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD
2024-11-03 00:34:15,542 [ scc.git] DEBUG Calling 'git fetch origin pull/337/head'
2024-11-03 00:34:15,832 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:15,832 [ scc.git] DEBUG * branch refs/pull/337/head -> FETCH_HEAD
2024-11-03 00:34:15,837 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head'
2024-11-03 00:34:16,159 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:16,159 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD
2024-11-03 00:34:16,167 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head'
2024-11-03 00:34:16,524 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:16,524 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD
2024-11-03 00:34:16,529 [ scc.git] DEBUG Calling 'git fetch origin pull/427/head'
2024-11-03 00:34:17,143 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:17,144 [ scc.git] DEBUG * branch refs/pull/427/head -> FETCH_HEAD
2024-11-03 00:34:17,148 [ scc.git] DEBUG Calling 'git fetch origin pull/431/head'
2024-11-03 00:34:17,464 [ scc.git] DEBUG From https://github.com/ome/omero-py
2024-11-03 00:34:17,465 [ scc.git] DEBUG * branch refs/pull/431/head -> FETCH_HEAD
2024-11-03 00:34:17,470 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:34:17,470 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:17,470 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:17,474 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-11-03 00:34:17,485 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:17,490 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-11-03 00:34:17,632 [ scc.git] DEBUG Auto-merging src/omero/cli.py
2024-11-03 00:34:17,632 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py
2024-11-03 00:34:17,633 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:17,638 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++
2024-11-03 00:34:17,639 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++---
2024-11-03 00:34:17,639 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-)
2024-11-03 00:34:17,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:17,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-11-03 00:34:17,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:17,784 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 207 (BlitzGateway.connect raise on error) d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-11-03 00:34:18,042 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-11-03 00:34:18,042 [ scc.git] DEBUG Auto-merging test/unit/test_gateway.py
2024-11-03 00:34:18,043 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:18,051 [ scc.git] DEBUG src/omero/gateway/__init__.py | 19 +++++++++++++------
2024-11-03 00:34:18,051 [ scc.git] DEBUG test/unit/test_gateway.py | 16 ++++++++++++++++
2024-11-03 00:34:18,051 [ scc.git] DEBUG 2 files changed, 29 insertions(+), 6 deletions(-)
2024-11-03 00:34:18,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:18,188 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-11-03 00:34:18,200 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:18,205 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 266 (errors: use raise_error from cli plugins) df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-11-03 00:34:18,304 [ scc.git] DEBUG Auto-merging src/omero/plugins/search.py
2024-11-03 00:34:18,305 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:18,308 [ scc.git] DEBUG src/omero/plugins/search.py | 13 +++++++++----
2024-11-03 00:34:18,308 [ scc.git] DEBUG 1 file changed, 9 insertions(+), 4 deletions(-)
2024-11-03 00:34:18,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:18,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...09ae8033d77faf0346255eb9644207e02c98709a'
2024-11-03 00:34:18,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:18,584 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 299 (Add parents and children to omero obj) 09ae8033d77faf0346255eb9644207e02c98709a'
2024-11-03 00:34:18,741 [ scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2024-11-03 00:34:18,741 [ scc.git] DEBUG Auto-merging test/unit/clitest/test_obj.py
2024-11-03 00:34:18,742 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:18,746 [ scc.git] DEBUG src/omero/plugins/obj.py | 69 ++++++++++++++++++++++++++++++++++++++++++-
2024-11-03 00:34:18,746 [ scc.git] DEBUG test/unit/clitest/test_obj.py | 2 +-
2024-11-03 00:34:18,746 [ scc.git] DEBUG 2 files changed, 69 insertions(+), 2 deletions(-)
2024-11-03 00:34:18,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:18,949 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-11-03 00:34:18,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:18,967 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-11-03 00:34:19,003 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:19,007 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++
2024-11-03 00:34:19,007 [ scc.git] DEBUG connect.py | 11 +++++++++++
2024-11-03 00:34:19,007 [ scc.git] DEBUG 2 files changed, 48 insertions(+)
2024-11-03 00:34:19,007 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml
2024-11-03 00:34:19,007 [ scc.git] DEBUG create mode 100644 connect.py
2024-11-03 00:34:19,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:19,327 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-11-03 00:34:19,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:19,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 337 (bulk.yml depth is passed to xargs) 0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-11-03 00:34:19,459 [ scc.git] DEBUG Auto-merging src/omero/plugins/import.py
2024-11-03 00:34:19,461 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:19,465 [ scc.git] DEBUG src/omero/plugins/import.py | 2 ++
2024-11-03 00:34:19,465 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2024-11-03 00:34:19,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:19,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023'
2024-11-03 00:34:19,722 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:19,726 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023'
2024-11-03 00:34:19,847 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2024-11-03 00:34:19,860 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:19,865 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--
2024-11-03 00:34:19,865 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-)
2024-11-03 00:34:20,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:20,097 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-11-03 00:34:20,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:20,114 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-11-03 00:34:20,234 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-11-03 00:34:20,235 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:20,245 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------
2024-11-03 00:34:20,245 [ scc.git] DEBUG 1 file changed, 36 deletions(-)
2024-11-03 00:34:20,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:20,476 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1'
2024-11-03 00:34:20,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:20,493 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 427 (Add fileset folder creation) ed3c6840a5a48ed1a8fa7cd2fd286a185f6017c1'
2024-11-03 00:34:20,565 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:20,568 [ scc.git] DEBUG .gitignore | 1 +
2024-11-03 00:34:20,569 [ scc.git] DEBUG src/omero/plugins/download.py | 17 ++++++++++++-----
2024-11-03 00:34:20,569 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 5 deletions(-)
2024-11-03 00:34:20,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:20,858 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0e500ec05bf9227b66b28a480b40e0936241d953'
2024-11-03 00:34:20,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:20,874 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 431 (omero.HdfStorage.update: add size check on data.rowNumbers) 0e500ec05bf9227b66b28a480b40e0936241d953'
2024-11-03 00:34:20,931 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:20,934 [ scc.git] DEBUG src/omero/hdfstorageV2.py | 1 +
2024-11-03 00:34:20,934 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2024-11-03 00:34:21,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:21,237 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:34:21,276 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:21,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:21,282 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:34:21,318 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:34:21,327 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a0981ee0> has no local changes
2024-11-03 00:34:21,327 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-py
Excluded PRs:
- PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
- PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
- PR 387 will-moore 'Numpy pixels type' (label: exclude)
- PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
- PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
- PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.
Merged PRs:
- PR 199 joshmoore 'user: allow setting default group'
- PR 207 manics 'BlitzGateway.connect raise on error'
- PR 266 joshmoore 'errors: use raise_error from cli plugins'
- PR 299 joshmoore 'Add parents and children to omero obj'
- PR 332 jburel 'Build conda'
- PR 337 will-moore 'bulk.yml depth is passed to xargs'
- PR 391 joshmoore 'Add jstack command'
- PR 408 jburel 'remove deprecated method'
- PR 427 Rdornier 'Add fileset folder creation'
- PR 431 sbesson 'omero.HdfStorage.update: add size check on data.rowNumbers'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:34:21,336 [ scc.git] DEBUG [detached HEAD 8117d7e9] merge master -Dorg -Ssuccess-only
2024-11-03 00:34:21,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:34:21,336 [ scc.git] INFO Overriding base-branch from master to develop
2024-11-03 00:34:21,336 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:34:21,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2024-11-03 00:34:22,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2024-11-03 00:34:22,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2024-11-03 00:34:23,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-11-03 00:34:23,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:24,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:24,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2024-11-03 00:34:24,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:24,974 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-11-03 00:34:25,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None
2024-11-03 00:34:25,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None
2024-11-03 00:34:26,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None
2024-11-03 00:34:26,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None
2024-11-03 00:34:27,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2024-11-03 00:34:27,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2024-11-03 00:34:28,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-11-03 00:34:28,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:29,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-11-03 00:34:29,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2024-11-03 00:34:29,494 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-11-03 00:34:29,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2024-11-03 00:34:30,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2024-11-03 00:34:30,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2024-11-03 00:34:31,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2024-11-03 00:34:31,366 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:34:31,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-11-03 00:34:31,366 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:31,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:31,372 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2024-11-03 00:34:31,375 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:34:31,376 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2024-11-03 00:34:31,380 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2024-11-03 00:34:31,385 [ scc.git] DEBUG Already up to date.
2024-11-03 00:34:31,385 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2024-11-03 00:34:31,773 [ scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-11-03 00:34:31,773 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2024-11-03 00:34:31,778 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2024-11-03 00:34:32,657 [ scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-11-03 00:34:32,658 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2024-11-03 00:34:32,663 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:34:32,663 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:32,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:32,668 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-11-03 00:34:32,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:32,686 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-11-03 00:34:32,853 [ scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py
2024-11-03 00:34:32,853 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py
2024-11-03 00:34:32,853 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-11-03 00:34:32,854 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-11-03 00:34:32,859 [ scc.git] DEBUG Calling 'git reset --hard 312afbed633613e1f728a1fe9eaac096e54318e0'
2024-11-03 00:34:32,864 [ scc.git] DEBUG HEAD is now at 312afbe Bump version: 5.8.3 → 5.8.4.dev0
2024-11-03 00:34:32,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:33,000 [ scc.git] DEBUG Calling 'git merge-base 312afbed633613e1f728a1fe9eaac096e54318e0 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-11-03 00:34:33,007 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..312afbed633613e1f728a1fe9eaac096e54318e0'
2024-11-03 00:34:33,011 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#220](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2024-11-03 00:34:33,015 [ scc.config] DEBUG Found github.token
2024-11-03 00:34:33,015 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2024-11-03 00:34:33,015 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-11-03 00:34:33,019 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:33,023 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2024-11-03 00:34:33,042 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:33,045 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2024-11-03 00:34:33,045 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2024-11-03 00:34:33,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:33,383 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:34:33,423 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:33,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:33,428 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:34:33,466 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:34:33,471 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a096fbe0> has no local changes
2024-11-03 00:34:33,472 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-scripts
Excluded PRs:
- PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
- PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:34:33,479 [ scc.git] DEBUG [detached HEAD 0ef9922] merge master -Dorg -Ssuccess-only
2024-11-03 00:34:33,479 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:34:33,479 [ scc.repo] DEBUG ## PRs found:
2024-11-03 00:34:33,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None
2024-11-03 00:34:34,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/590 HTTP/1.1" 200 None
2024-11-03 00:34:34,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314 HTTP/1.1" 200 None
2024-11-03 00:34:35,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:35,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:36,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314 HTTP/1.1" 200 None
2024-11-03 00:34:36,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/b62eb79447919619888bd28ee4e264f7b744f314?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:37,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314 HTTP/1.1" 200 None
2024-11-03 00:34:37,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b62eb79447919619888bd28ee4e264f7b744f314/status HTTP/1.1" 200 None
2024-11-03 00:34:37,604 [ scc.repo] DEBUG - PR 590 knabar 'Update changelog'
2024-11-03 00:34:38,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/585 HTTP/1.1" 200 None
2024-11-03 00:34:38,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/583 HTTP/1.1" 200 None
2024-11-03 00:34:38,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/583/comments HTTP/1.1" 200 None
2024-11-03 00:34:39,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd HTTP/1.1" 200 None
2024-11-03 00:34:39,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:40,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:40,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd HTTP/1.1" 200 None
2024-11-03 00:34:41,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/dd2879608e047a7d71a648a23e6955ce591950fd?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:41,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd HTTP/1.1" 200 None
2024-11-03 00:34:42,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/dd2879608e047a7d71a648a23e6955ce591950fd/status HTTP/1.1" 200 None
2024-11-03 00:34:42,180 [ scc.repo] DEBUG - PR 583 DavidStirling 'Allow users to click a group name to quick-switch to that group'
2024-11-03 00:34:42,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/581 HTTP/1.1" 200 None
2024-11-03 00:34:43,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/581/comments HTTP/1.1" 200 None
2024-11-03 00:34:43,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None
2024-11-03 00:34:44,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None
2024-11-03 00:34:44,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None
2024-11-03 00:34:45,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None
2024-11-03 00:34:45,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-11-03 00:34:46,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:46,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:46,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-11-03 00:34:47,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:47,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-11-03 00:34:48,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/status HTTP/1.1" 200 None
2024-11-03 00:34:48,237 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-11-03 00:34:48,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None
2024-11-03 00:34:49,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None
2024-11-03 00:34:49,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-11-03 00:34:50,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:50,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:51,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-11-03 00:34:51,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:51,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-11-03 00:34:52,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/status HTTP/1.1" 200 None
2024-11-03 00:34:52,367 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test'
2024-11-03 00:34:52,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None
2024-11-03 00:34:53,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None
2024-11-03 00:34:53,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None
2024-11-03 00:34:54,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-03 00:34:54,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-03 00:34:54,749 [ scc.repo] DEBUG ## Branches found:
2024-11-03 00:34:54,749 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-11-03 00:34:54,750 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:54,750 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:54,756 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-03 00:34:54,760 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-03 00:34:54,760 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-03 00:34:54,903 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-03 00:34:54,923 [ scc.git] DEBUG Updating da5b7d11f..213bb61ad
2024-11-03 00:34:55,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls/580 HTTP/1.1" 200 None
2024-11-03 00:34:55,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls/589 HTTP/1.1" 200 None
2024-11-03 00:34:55,951 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head'
2024-11-03 00:34:56,850 [ scc.git] DEBUG From https://github.com/ome/omero-web
2024-11-03 00:34:56,851 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD
2024-11-03 00:34:56,856 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head'
2024-11-03 00:34:57,307 [ scc.git] DEBUG From https://github.com/ome/omero-web
2024-11-03 00:34:57,308 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD
2024-11-03 00:34:57,313 [ scc.git] DEBUG Calling 'git fetch origin pull/583/head'
2024-11-03 00:34:57,722 [ scc.git] DEBUG From https://github.com/ome/omero-web
2024-11-03 00:34:57,722 [ scc.git] DEBUG * branch refs/pull/583/head -> FETCH_HEAD
2024-11-03 00:34:57,727 [ scc.git] DEBUG Calling 'git fetch origin pull/590/head'
2024-11-03 00:34:58,047 [ scc.git] DEBUG From https://github.com/ome/omero-web
2024-11-03 00:34:58,047 [ scc.git] DEBUG * branch refs/pull/590/head -> FETCH_HEAD
2024-11-03 00:34:58,052 [ scc.git] DEBUG ## Unique users: []
2024-11-03 00:34:58,053 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:58,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:58,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-11-03 00:34:58,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:58,072 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-11-03 00:34:58,106 [ scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-11-03 00:34:58,106 [ scc.git] DEBUG Auto-merging setup.py
2024-11-03 00:34:58,119 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:58,123 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++-
2024-11-03 00:34:58,123 [ scc.git] DEBUG setup.py | 1 +
2024-11-03 00:34:58,123 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-)
2024-11-03 00:34:58,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:58,254 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-11-03 00:34:58,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:58,268 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-11-03 00:34:58,351 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py
2024-11-03 00:34:58,351 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-11-03 00:34:58,372 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:58,376 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +-
2024-11-03 00:34:58,376 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++--
2024-11-03 00:34:58,376 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-)
2024-11-03 00:34:58,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:58,641 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dd2879608e047a7d71a648a23e6955ce591950fd'
2024-11-03 00:34:58,650 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:58,654 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 583 (Allow users to click a group name to quick-switch to that group) dd2879608e047a7d71a648a23e6955ce591950fd'
2024-11-03 00:34:58,712 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:58,716 [ scc.git] DEBUG .../templates/webclient/base/includes/group_user_content.html | 8 ++++++--
2024-11-03 00:34:58,716 [ scc.git] DEBUG .../templates/webclient/base/includes/group_user_dropdown2.html | 2 --
2024-11-03 00:34:58,716 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 4 deletions(-)
2024-11-03 00:34:59,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:59,016 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b62eb79447919619888bd28ee4e264f7b744f314'
2024-11-03 00:34:59,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:59,029 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 590 (Update changelog) b62eb79447919619888bd28ee4e264f7b744f314'
2024-11-03 00:34:59,101 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-03 00:34:59,105 [ scc.git] DEBUG CHANGELOG.md | 15 +++++++++++++++
2024-11-03 00:34:59,105 [ scc.git] DEBUG 1 file changed, 15 insertions(+)
2024-11-03 00:34:59,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:59,408 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-03 00:34:59,449 [ scc.git] DEBUG Get sha1 of %s
2024-11-03 00:34:59,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-03 00:34:59,454 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:34:59,492 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:34:59,502 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a00d5fa0> has no local changes
2024-11-03 00:34:59,502 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web
Excluded PRs:
- PR 585 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
- PR 535 will-moore 'Initial working browser history' (stage: draft)
- PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Updating da5b7d11f..213bb61ad
Previously merged:
- PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'
- PR 589 knabar 'Remove Python 2 compatibility import'
Merged PRs:
- PR 527 will-moore 'Add some initial CSP settings to test'
- PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
- PR 583 DavidStirling 'Allow users to click a group name to quick-switch to that group'
- PR 590 knabar 'Update changelog'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:34:59,513 [ scc.git] DEBUG [detached HEAD eb9e838a2] merge master -Dorg -Ssuccess-only
2024-11-03 00:34:59,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:34:59,514 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-03 00:34:59,564 [ scc.config] DEBUG Found submodule.omero-dropbox.url
2024-11-03 00:34:59,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:34:59,812 [ scc.config] DEBUG Found submodule.omero-marshal.url
2024-11-03 00:35:00,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:35:00,226 [ scc.config] DEBUG Found submodule.omero-py.url
2024-11-03 00:35:00,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:35:00,603 [ scc.config] DEBUG Found submodule.omero-scripts.url
2024-11-03 00:35:01,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:35:01,034 [ scc.config] DEBUG Found submodule.omero-web.url
2024-11-03 00:35:01,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-03 00:35:01,415 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-03 00:35:01,457 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff6a1f2c8b0> has local changes
2024-11-03 00:35:01,457 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-python-superbuild
Already up to date.
Merged PRs:
- PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
Repository: ome/omero-dropbox
Already up to date.
Merged PRs:
- PR 16 joshmoore 'Review all instances of whitelist/blacklist'
Repository: ome/omero-marshal
Excluded PRs:
- PR 34 chris-allan 'Initial support for Event' (exclude comment)
- PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.
Merged PRs:
- PR 69 will-moore 'Roi encoder allows Shape None'
Repository: ome/omero-py
Excluded PRs:
- PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
- PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
- PR 387 will-moore 'Numpy pixels type' (label: exclude)
- PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
- PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
- PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.
Merged PRs:
- PR 199 joshmoore 'user: allow setting default group'
- PR 207 manics 'BlitzGateway.connect raise on error'
- PR 266 joshmoore 'errors: use raise_error from cli plugins'
- PR 299 joshmoore 'Add parents and children to omero obj'
- PR 332 jburel 'Build conda'
- PR 337 will-moore 'bulk.yml depth is passed to xargs'
- PR 391 joshmoore 'Add jstack command'
- PR 408 jburel 'remove deprecated method'
- PR 427 Rdornier 'Add fileset folder creation'
- PR 431 sbesson 'omero.HdfStorage.update: add size check on data.rowNumbers'
Repository: ome/omero-scripts
Excluded PRs:
- PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
- PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Repository: ome/omero-web
Excluded PRs:
- PR 585 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
- PR 535 will-moore 'Initial working browser history' (stage: draft)
- PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Updating da5b7d11f..213bb61ad
Previously merged:
- PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'
- PR 589 knabar 'Remove Python 2 compatibility import'
Merged PRs:
- PR 527 will-moore 'Add some initial CSP settings to test'
- PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
- PR 583 DavidStirling 'Allow users to click a group name to quick-switch to that group'
- PR 590 knabar 'Update changelog'
Generated by OMERO-python-superbuild-push#220 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/220/)'
2024-11-03 00:35:01,467 [ scc.git] DEBUG [detached HEAD bab0502] merge master -Dorg -Ssuccess-only
2024-11-03 00:35:01,467 [ scc.merge] INFO Repository: ome/omero-python-superbuild
2024-11-03 00:35:01,467 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-)
2024-11-03 00:35:01,467 [ scc.merge] INFO Already up to date.
2024-11-03 00:35:01,467 [ scc.merge] INFO
2024-11-03 00:35:01,467 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,467 [ scc.merge] INFO - PR 293 dependabot[bot] 'Bump omero-py from `749a68a` to `4fd72ef`'
2024-11-03 00:35:01,467 [ scc.merge] INFO
2024-11-03 00:35:01,467 [ scc.merge] INFO Repository: ome/omero-dropbox
2024-11-03 00:35:01,467 [ scc.merge] INFO Already up to date.
2024-11-03 00:35:01,467 [ scc.merge] INFO
2024-11-03 00:35:01,467 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,467 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-11-03 00:35:01,467 [ scc.merge] INFO
2024-11-03 00:35:01,467 [ scc.merge] INFO Repository: ome/omero-marshal
2024-11-03 00:35:01,467 [ scc.merge] INFO Excluded PRs:
2024-11-03 00:35:01,467 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
2024-11-03 00:35:01,468 [ scc.merge] INFO Already up to date.
2024-11-03 00:35:01,468 [ scc.merge] INFO
2024-11-03 00:35:01,468 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None'
2024-11-03 00:35:01,468 [ scc.merge] INFO
2024-11-03 00:35:01,468 [ scc.merge] INFO Repository: ome/omero-py
2024-11-03 00:35:01,468 [ scc.merge] INFO Excluded PRs:
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 429 jo-mueller 'move `repr_html` to `_ImageWrapper`' (user: jo-mueller)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 387 will-moore 'Numpy pixels type' (label: exclude)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
2024-11-03 00:35:01,468 [ scc.merge] INFO Already up to date.
2024-11-03 00:35:01,468 [ scc.merge] INFO
2024-11-03 00:35:01,468 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 207 manics 'BlitzGateway.connect raise on error'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 332 jburel 'Build conda'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 427 Rdornier 'Add fileset folder creation'
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 431 sbesson 'omero.HdfStorage.update: add size check on data.rowNumbers'
2024-11-03 00:35:01,468 [ scc.merge] INFO
2024-11-03 00:35:01,468 [ scc.merge] INFO Repository: ome/omero-scripts
2024-11-03 00:35:01,468 [ scc.merge] INFO Excluded PRs:
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2024-11-03 00:35:01,468 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2024-11-03 00:35:01,469 [ scc.merge] INFO Already up to date.
2024-11-03 00:35:01,469 [ scc.merge] INFO
2024-11-03 00:35:01,469 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2024-11-03 00:35:01,469 [ scc.merge] INFO
2024-11-03 00:35:01,469 [ scc.merge] INFO Conflicting PRs (not included):
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-11-03 00:35:01,469 [ scc.merge] INFO
2024-11-03 00:35:01,469 [ scc.merge] INFO Repository: ome/omero-web
2024-11-03 00:35:01,469 [ scc.merge] INFO Excluded PRs:
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 585 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 581 Tom-TBT 'Dynamic generation of the LUTs png ' (user: Tom-TBT)
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft)
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
2024-11-03 00:35:01,469 [ scc.merge] INFO Updating da5b7d11f..213bb61ad
2024-11-03 00:35:01,469 [ scc.merge] INFO Previously merged:
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 580 sbesson 'omeroweb.webgateway.obj_id_bitmask: handle empty query results'
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 589 knabar 'Remove Python 2 compatibility import'
2024-11-03 00:35:01,469 [ scc.merge] INFO
2024-11-03 00:35:01,469 [ scc.merge] INFO Merged PRs:
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test'
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 583 DavidStirling 'Allow users to click a group name to quick-switch to that group'
2024-11-03 00:35:01,469 [ scc.merge] INFO - PR 590 knabar 'Update changelog'
2024-11-03 00:35:01,469 [ scc.merge] INFO
2024-11-03 00:35:01,469 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-11-03 00:35:01,470 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-11-03 00:35:01,474 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:35:01,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-11-03 00:35:01,478 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:35:01,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-11-03 00:35:01,483 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:35:01,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-11-03 00:35:01,487 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-11-03 00:35:01,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-11-03 00:35:01,492 [ scc.git] DEBUG Calling 'git remote'
2024-11-03 00:35:01,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
Update component versions
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
download_blitz_target()
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
resp = urlopen(loc)
File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
download_blitz_target()
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
resp = urlopen(loc)
File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'omero-dropbox'
Entering 'omero-marshal'
Entering 'omero-py'
Entering 'omero-scripts'
Entering 'omero-web'
Entering 'omero-dropbox'
HEAD detached from a4307f4
nothing to commit, working tree clean
Entering 'omero-marshal'
HEAD detached from cca4c2f
nothing to commit, working tree clean
Entering 'omero-py'
HEAD detached from 4fd72efa
nothing to commit, working tree clean
Entering 'omero-scripts'
HEAD detached from 312afbe
nothing to commit, working tree clean
Entering 'omero-web'
HEAD detached from da5b7d11f
nothing to commit, working tree clean
HEAD detached from e849d72
nothing to commit, working tree clean
2024-11-03 00:35:28,643 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci
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