00:21:31 Started by upstream project "Trigger" build number 141
00:21:31 originally caused by:
00:21:31 Started by timer
00:21:31 Running as SYSTEM
00:21:31 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:21:31 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4255140336489399837.sh
00:21:32 + source /home/settings.env
00:21:32 ++ OMERO_DB_HOST=pg
00:21:32 ++ OMERO_DB_USER=postgres
00:21:32 ++ OMERO_DB_PASS=
00:21:32 ++ OMERO_ROOT_PASS=omero
00:21:32 ++ OMERO_DATA_DIR=/OMERO
00:21:32 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:21:32 + OMERO_DB_NAME=OMERO-server
00:21:32 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:21:32 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:21:32 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:21:32 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:21:32 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:21:32 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:21:32 ++ deactivate nondestructive
00:21:32 ++ '[' -n '' ']'
00:21:32 ++ '[' -n '' ']'
00:21:32 ++ hash -r
00:21:32 ++ '[' -n '' ']'
00:21:32 ++ unset VIRTUAL_ENV
00:21:32 ++ unset VIRTUAL_ENV_PROMPT
00:21:32 ++ '[' '!' nondestructive = nondestructive ']'
00:21:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:21:32 ++ export VIRTUAL_ENV
00:21:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:21:32 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:21:32 ++ export PATH
00:21:32 ++ '[' -n '' ']'
00:21:32 ++ '[' -z '' ']'
00:21:32 ++ _OLD_VIRTUAL_PS1=
00:21:32 ++ PS1='(.venv3) '
00:21:32 ++ export PS1
00:21:32 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:21:32 ++ export VIRTUAL_ENV_PROMPT
00:21:32 ++ hash -r
00:21:32 + omero admin stop
00:21:43 Waiting on shutdown. Use CTRL-C to exit
00:21:43 .+ sleep 5
00:21:58 + deactivate
00:21:58 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:21:58 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:21:58 + export PATH
00:21:58 + unset _OLD_VIRTUAL_PATH
00:21:58 + '[' -n '' ']'
00:21:58 + hash -r
00:21:58 + '[' -n '' ']'
00:21:58 + unset VIRTUAL_ENV
00:21:58 + unset VIRTUAL_ENV_PROMPT
00:21:58 + '[' '!' '' = nondestructive ']'
00:21:58 + unset -f deactivate
00:21:58 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:23:56 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:24:16 + '[' false = true ']'
00:24:16 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:24:16 Skipping PURGE_DATA:CleanDbAndRepo
00:24:16 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.4.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:24:23 Copied 1 artifact from "OMERO-build" build number 121
00:24:23 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 110
00:24:23 Copied 2 artifacts from "OMERO-build-build" build number 122
00:24:23 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8930741809925903156.sh
00:24:23 + source /home/settings.env
00:24:23 ++ OMERO_DB_HOST=pg
00:24:23 ++ OMERO_DB_USER=postgres
00:24:23 ++ OMERO_DB_PASS=
00:24:23 ++ OMERO_ROOT_PASS=omero
00:24:23 ++ OMERO_DATA_DIR=/OMERO
00:24:23 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:24:23 + OMERO_DB_NAME=OMERO-server
00:24:23 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:24:23 + mkdir -p /home/omero/omero-server-data
00:24:23 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:24:23 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:24:23 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:24:23 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:24:23 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:24:23 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:24:23 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:24:23 ++ ls OMERO.server-5.6.3-689-82f58e45dc-ice36-b121.zip
00:24:23 + ZIP=OMERO.server-5.6.3-689-82f58e45dc-ice36-b121.zip
00:24:23 + '[' '!' -z '' ']'
00:24:23 + DIST=OMERO.server-5.6.3-689-82f58e45dc-ice36-b121
00:24:23 + unzip OMERO.server-5.6.3-689-82f58e45dc-ice36-b121.zip
00:24:23 Archive: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121.zip
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/blitz/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/grid/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/profiles/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/error/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/grid/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/janelia/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/matplotlib/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/ncsa_paledit/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/seaborn/
00:24:23 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/luts/wcif/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/analysis_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/annotation_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/export_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/figure_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/import_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/scripts/omero/util_scripts/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/server/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/misc/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__1/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__10/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__11/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__2/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__3/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__4/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__5/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__6/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__7/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__8/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__9/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__4/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__5/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__6/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__7/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.1__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.2__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.2__0/t/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.3__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.4__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.0__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.1__1/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.2__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__1/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__2/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__3/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/var/
00:24:24 creating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/var/tmp/
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/LICENSE.txt
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/backup.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/blitz/mail-senders.example
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/blitz/mail-server.example
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/build.properties
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/env.bat
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/env.sh
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/hibernate.properties
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/ice.config
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/logback-cli.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/logback-indexing-cli.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/logback-indexing.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/logback.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/mime.types
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/node1.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/node2.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/omero.properties
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/profiles/psql
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/rollover.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/Windows.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/error/maintainance.html
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/grid/README
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/grid/default.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/grid/templates.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/grid/windefault.xml
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/ice.config
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/internal.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/master.cfg
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/templates/robot.template
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/etc/testdropbox.config
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/history.rst
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/accessors-smart.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/activation.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aggdesigner-algorithm.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aircompressor.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/annotations.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/antlr.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aopalliance.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/apache-client.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/apiguardian-api.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/arns.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/asm.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/auth.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/avatica-core.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/avatica-metrics.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aws-core.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aws-query-protocol.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/aws-xml-protocol.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/base.jar
00:24:24 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-anim.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-awt-util.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-bridge.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-codec.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-constants.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-css.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-dom.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-ext.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-gvt.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-i18n.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-parser.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-script.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-shared-resources.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-svg-dom.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-svggen.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-transcoder.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-util.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/batik-xml.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/blosc-java.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/btm.jar
00:24:25 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/lib/client/caffeine.jar
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00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/apache-v1.1.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/apache-v2.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/asm.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/bouncy_castle_license.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/bsd.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/cddl-v1.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/cpl-v10.html
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/crystalclear.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/django.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/dom4j.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/epl-v1.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/fbsd.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/freemarker.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/gpl-v2.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/gpl.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/gtest.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/iconsweets_license.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/jamon.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/jmock.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/jquery.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/jtidy.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/lgpl-3.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/lgpl-v2.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/lgpl-v2.1.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/lgpl-v3.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/lgpl.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/matplotlib.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/mit.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/mpl-v1_0.htm
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/npl-1_1.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/path.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/pil.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/postgresql.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/psf-v2.0.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/psf-v2.5.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/scons.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/slf4j.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/tablelayout.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/which.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/zlib-libpng.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/share/licenses/zpl-v2.1.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/README.txt
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/misc/Makefile
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/misc/current.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/misc/enums.py
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__1/OMERO3__7.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__3/OMERO3__5.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__4/OMERO3__5.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__4/OMERO3__1.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__5/OMERO3__4.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__6/OMERO3__5.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO3__7/OMERO3__6.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO4__0/OMERO3A__11.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:24:38 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/psql-footer.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/psql-header.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/schema.sql
00:24:39 inflating: OMERO.server-5.6.3-689-82f58e45dc-ice36-b121/sql/psql/OMERO5.4__0/views.sql
00:24:39 + rm -f OMERO.server-5.6.3-689-82f58e45dc-ice36-b121.zip
00:24:39 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-82f58e45dc-ice36-b121 /home/omero/workspace/OMERO-server/OMERO.server
00:24:39 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:24:39 ++ deactivate nondestructive
00:24:39 ++ '[' -n '' ']'
00:24:39 ++ '[' -n '' ']'
00:24:39 ++ hash -r
00:24:39 ++ '[' -n '' ']'
00:24:39 ++ unset VIRTUAL_ENV
00:24:39 ++ unset VIRTUAL_ENV_PROMPT
00:24:39 ++ '[' '!' nondestructive = nondestructive ']'
00:24:39 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:24:39 ++ export VIRTUAL_ENV
00:24:39 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:24:39 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:24:39 ++ export PATH
00:24:39 ++ '[' -n '' ']'
00:24:39 ++ '[' -z '' ']'
00:24:39 ++ _OLD_VIRTUAL_PS1=
00:24:39 ++ PS1='(.venv3) '
00:24:39 ++ export PS1
00:24:39 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:24:39 ++ export VIRTUAL_ENV_PROMPT
00:24:39 ++ hash -r
00:24:39 + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
00:24:40 Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70
00:24:40 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
00:24:40 Installing collected packages: pip
00:24:40 Attempting uninstall: pip
00:24:40 Found existing installation: pip 24.0
00:24:40 Uninstalling pip-24.0:
00:24:41 Successfully uninstalled pip-24.0
00:24:52 Successfully installed pip-26.2.2
00:24:52
00:24:52 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:24:52 [notice] To update, run: pip install --upgrade pip
00:24:52 + python -m pip install --upgrade certifi
00:24:53 Collecting certifi
00:24:53 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
00:24:53 Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
00:24:53 Installing collected packages: certifi
00:24:53 Successfully installed certifi-2026.10.23
00:24:53
00:24:53 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:24:53 [notice] To update, run: pip install --upgrade pip
00:24:53 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:24:54 Collecting zeroc-ice==3.6.5
00:24:54 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:24:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.6 MB/s 0:00:02
00:24:57 Installing collected packages: zeroc-ice
00:25:00 Successfully installed zeroc-ice-3.6.5
00:25:00
00:25:00 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:25:00 [notice] To update, run: pip install --upgrade pip
00:25:00 + pip install markdown
00:25:00 Collecting markdown
00:25:00 Using cached markdown-3.11.3-py3-none-any.whl.metadata (5.1 kB)
00:25:01 Using cached markdown-3.11.3-py3-none-any.whl (116 kB)
00:25:01 Installing collected packages: markdown
00:25:01 Successfully installed markdown-3.11.3
00:25:01
00:25:01 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:25:01 [notice] To update, run: pip install --upgrade pip
00:25:01 + pip install reportlab
00:25:02 Collecting reportlab
00:25:02 Using cached reportlab-5.1.0-py3-none-any.whl.metadata (1.6 kB)
00:25:03 Collecting pillow>=9.0.0 (from reportlab)
00:25:03 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
00:25:03 Collecting charset-normalizer (from reportlab)
00:25:03 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
00:25:03 Using cached reportlab-5.1.0-py3-none-any.whl (2.0 MB)
00:25:03 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:25:03 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
00:25:03 Installing collected packages: pillow, charset-normalizer, reportlab
00:25:10
00:25:10 Successfully installed charset-normalizer-3.5.2 pillow-13.0.0 reportlab-5.1.0
00:25:10
00:25:10 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:25:10 [notice] To update, run: pip install --upgrade pip
00:25:11 + pip install pyarrow
00:25:11 Collecting pyarrow
00:25:11 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:25:12 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (55.0 MB)
00:25:12 Installing collected packages: pyarrow
00:25:20 Successfully installed pyarrow-26.0.1
00:25:20
00:25:20 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:25:20 [notice] To update, run: pip install --upgrade pip
00:25:20 + pip install omego
00:25:21 Collecting omego
00:25:21 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:25:21 Collecting future (from omego)
00:25:22 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:25:22 Collecting yaclifw>=0.1.1 (from omego)
00:25:22 Using cached yaclifw-0.2.0-py3-none-any.whl
00:25:22 Collecting six (from yaclifw>=0.1.1->omego)
00:25:22 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:25:22 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:25:22 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:25:22 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:25:22 Installing collected packages: six, future, yaclifw, omego
00:25:26
00:25:26 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:25:26
00:25:26 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:25:26 [notice] To update, run: pip install --upgrade pip
00:25:27 + pip install tables
00:25:27 Collecting tables
00:25:27 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:25:28 Collecting numpy>=1.20.0 (from tables)
00:25:28 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:25:28 Collecting numexpr>=2.6.2 (from tables)
00:25:28 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:25:28 Collecting packaging (from tables)
00:25:28 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
00:25:28 Collecting py-cpuinfo (from tables)
00:25:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:25:28 Collecting blosc2>=2.3.0 (from tables)
00:25:29 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB)
00:25:29 Collecting ndindex (from blosc2>=2.3.0->tables)
00:25:29 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:25:29 Collecting msgpack (from blosc2>=2.3.0->tables)
00:25:29 Using cached msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:25:29 Collecting pydantic (from blosc2>=2.3.0->tables)
00:25:29 Using cached pydantic-2.14.3-py3-none-any.whl.metadata (141 kB)
00:25:29 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
00:25:29 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
00:25:29 Collecting rich (from blosc2>=2.3.0->tables)
00:25:30 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
00:25:30 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
00:25:30 Using cached threadpoolctl-3.8.0-py3-none-any.whl.metadata (29 kB)
00:25:30 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
00:25:30 Using cached anyio-4.16.0-py3-none-any.whl.metadata (4.7 kB)
00:25:30 Requirement already satisfied: certifi in ./.venv3/lib/python3.11/site-packages (from httpx[http2]->blosc2>=2.3.0->tables) (2026.10.23)
00:25:30 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
00:25:30 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
00:25:30 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
00:25:30 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
00:25:30 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
00:25:30 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
00:25:30 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:25:30 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
00:25:30 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:25:31 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
00:25:31 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
00:25:31 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
00:25:31 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
00:25:31 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:25:31 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
00:25:31 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
00:25:32 Collecting pydantic-core==2.50.4 (from pydantic->blosc2>=2.3.0->tables)
00:25:32 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.6 kB)
00:25:32 Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables)
00:25:32 Using cached typing_inspection-0.4.5-py3-none-any.whl.metadata (2.6 kB)
00:25:32 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
00:25:32 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
00:25:32 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
00:25:32 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
00:25:32 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
00:25:32 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
00:25:32 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:25:32 Using cached blosc2-4.14.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.7 MB)
00:25:32 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
00:25:32 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:25:33 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
00:25:33 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
00:25:33 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
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00:25:33 Using cached anyio-4.16.0-py3-none-any.whl (134 kB)
00:25:33 Using cached idna-3.20-py3-none-any.whl (69 kB)
00:25:33 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
00:25:33 Using cached msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (480 kB)
00:25:33 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:25:33 Using cached packaging-26.3-py3-none-any.whl (129 kB)
00:25:33 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:25:33 Using cached pydantic-2.14.3-py3-none-any.whl (494 kB)
00:25:33 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (2.3 MB)
00:25:33 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
00:25:33 Using cached typing_inspection-0.4.5-py3-none-any.whl (14 kB)
00:25:33 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
00:25:33 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB)
00:25:33 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
00:25:33 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
00:25:33 Using cached threadpoolctl-3.8.0-py3-none-any.whl (32 kB)
00:25:34 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
00:26:13
00:26:13 Successfully installed annotated-types-0.8.0 anyio-4.16.0 blosc2-4.14.1 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.4 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.3 pydantic-core-2.50.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.8.0 typing-inspection-0.4.5 typing_extensions-4.16.0
00:26:13
00:26:13 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:26:13 [notice] To update, run: pip install --upgrade pip
00:26:13 + pip install jinja2
00:26:14 Collecting jinja2
00:26:14 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:26:14 Collecting MarkupSafe>=2.0 (from jinja2)
00:26:14 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:26:14 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:26:14 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:26:14 Installing collected packages: MarkupSafe, jinja2
00:26:15
00:26:15 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6
00:26:15
00:26:15 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:26:15 [notice] To update, run: pip install --upgrade pip
00:26:15 + pip install omero-py
00:26:16 Collecting omero-py
00:26:16 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
00:26:16 Collecting appdirs (from omero-py)
00:26:16 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:26:16 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py) (1.0.0)
00:26:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py) (2.4.6)
00:26:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py) (13.0.0)
00:26:16 Collecting PyYAML (from omero-py)
00:26:16 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:26:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py) (3.6.5)
00:26:16 Collecting requests (from omero-py)
00:26:16 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:26:16 Collecting portalocker (from omero-py)
00:26:17 Using cached portalocker-4.4.2-py3-none-any.whl.metadata (10 kB)
00:26:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.5.2)
00:26:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.20)
00:26:17 Collecting urllib3<3,>=1.26 (from requests->omero-py)
00:26:17 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB)
00:26:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (2026.10.23)
00:26:17 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
00:26:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:26:17 Using cached portalocker-4.4.2-py3-none-any.whl (129 kB)
00:26:17 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:26:17 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
00:26:17 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
00:26:17 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
00:26:31
00:26:31 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.2 requests-2.34.2 urllib3-2.8.0
00:26:31
00:26:31 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:26:31 [notice] To update, run: pip install --upgrade pip
00:26:31 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:26:32 Collecting omero-metadata
00:26:32 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-athl9kbh/omero-metadata_1ef935a39d294701a154ad3fb78d2a47
00:26:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-athl9kbh/omero-metadata_1ef935a39d294701a154ad3fb78d2a47
00:26:33 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 3938090dd4f1891f42e7e4dc88c12e865156f1e1
00:26:33 Installing build dependencies: started
00:26:34 Installing build dependencies: finished with status 'done'
00:26:34 Getting requirements to build wheel: started
00:26:35 Getting requirements to build wheel: finished with status 'done'
00:26:35 Preparing metadata (pyproject.toml): started
00:26:35 Preparing metadata (pyproject.toml): finished with status 'done'
00:26:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-metadata) (5.23.0)
00:26:35 Collecting pandas<3,>=2 (from omero-metadata)
00:26:35 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:26:35 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
00:26:35 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
00:26:35 Using cached python_dateutil-4.0.0-py3-none-any.whl.metadata (7.3 kB)
00:26:36 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
00:26:36 Using cached pytz-2026.6-py2.py3-none-any.whl.metadata (22 kB)
00:26:36 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
00:26:36 Using cached tzdata-2026.6-py2.py3-none-any.whl.metadata (1.4 kB)
00:26:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:26:36 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:26:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (13.0.0)
00:26:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
00:26:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:26:36 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
00:26:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.2)
00:26:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2)
00:26:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20)
00:26:36 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0)
00:26:36 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.10.23)
00:26:36 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:26:36 Using cached python_dateutil-4.0.0-py3-none-any.whl (92 kB)
00:26:36 Using cached pytz-2026.6-py2.py3-none-any.whl (506 kB)
00:26:36 Using cached tzdata-2026.6-py2.py3-none-any.whl (348 kB)
00:26:36 Building wheels for collected packages: omero-metadata
00:26:36 Building wheel for omero-metadata (pyproject.toml): started
00:26:36 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:26:36 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=bc5e4b33a6a5edea295decdc7f987ff887900dfa3493e7c1f32cea02504ced47
00:26:36 Stored in directory: /tmp/pip-ephem-wheel-cache-3mhxl2dx/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:26:36 Successfully built omero-metadata
00:26:36 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:27:17
00:27:17 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-4.0.0 pytz-2026.6 tzdata-2026.6
00:27:17
00:27:17 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:27:17 [notice] To update, run: pip install --upgrade pip
00:27:17 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:27:18 Collecting omero-cli-render
00:27:18 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-dkk6_dzi/omero-cli-render_4159327e03404535a6f9a1c725b77508
00:27:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-dkk6_dzi/omero-cli-render_4159327e03404535a6f9a1c725b77508
00:27:19 Running command git checkout -b merge_ci --track origin/merge_ci
00:27:19 Switched to a new branch 'merge_ci'
00:27:19 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:27:19 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit cce9dc599d89775f975780d8eeeddddd27e042c7
00:27:19 Installing build dependencies: started
00:27:20 Installing build dependencies: finished with status 'done'
00:27:20 Getting requirements to build wheel: started
00:27:21 Getting requirements to build wheel: finished with status 'done'
00:27:21 Preparing metadata (pyproject.toml): started
00:27:21 Preparing metadata (pyproject.toml): finished with status 'done'
00:27:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:27:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (5.23.0)
00:27:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:27:21 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:27:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
00:27:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (13.0.0)
00:27:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:27:21 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
00:27:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.2)
00:27:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2)
00:27:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20)
00:27:21 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0)
00:27:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.10.23)
00:27:21 Building wheels for collected packages: omero-cli-render
00:27:21 Building wheel for omero-cli-render (pyproject.toml): started
00:27:21 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:27:21 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=92b4d2eb33e8467374e58262324f824dd39392d7bae6d4d70e7b0d2f4731ec86
00:27:21 Stored in directory: /tmp/pip-ephem-wheel-cache-m93c80ti/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:27:21 Successfully built omero-cli-render
00:27:21 Installing collected packages: omero-cli-render
00:27:21 Successfully installed omero-cli-render-0.8.2.dev0
00:27:21
00:27:21 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:27:21 [notice] To update, run: pip install --upgrade pip
00:27:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:27:22 Collecting omero-cli-duplicate
00:27:22 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-mygvlj36/omero-cli-duplicate_fde963afd7294c7b8999b0acd410cd40
00:27:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-mygvlj36/omero-cli-duplicate_fde963afd7294c7b8999b0acd410cd40
00:27:23 Running command git checkout -b merge_ci --track origin/merge_ci
00:27:24 Switched to a new branch 'merge_ci'
00:27:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:27:24 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c6e7f657906d2f0c3e928b9837aea3ca799b094a
00:27:24 Installing build dependencies: started
00:27:25 Installing build dependencies: finished with status 'done'
00:27:25 Getting requirements to build wheel: started
00:27:25 Getting requirements to build wheel: finished with status 'done'
00:27:25 Preparing metadata (pyproject.toml): started
00:27:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:27:25 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
00:27:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:27:25 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:27:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
00:27:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (13.0.0)
00:27:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:27:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:27:25 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
00:27:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.2)
00:27:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2)
00:27:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20)
00:27:25 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0)
00:27:25 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.10.23)
00:27:25 Building wheels for collected packages: omero-cli-duplicate
00:27:25 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:27:25 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:27:25 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=563390412f24e44c055c0338606a1ca1900839bc8eba2a32feb3f81442c6c868
00:27:25 Stored in directory: /tmp/pip-ephem-wheel-cache-ibm6wcl1/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:27:25 Successfully built omero-cli-duplicate
00:27:26 Installing collected packages: omero-cli-duplicate
00:27:26 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:27:26
00:27:26 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:27:26 [notice] To update, run: pip install --upgrade pip
00:27:26 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:27:26 Collecting omero-cli-zarr
00:27:26 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-diowai5v/omero-cli-zarr_9c7650a0b19c4ac38d3c8db8ebc1993e
00:27:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-diowai5v/omero-cli-zarr_9c7650a0b19c4ac38d3c8db8ebc1993e
00:27:28 Running command git checkout -b merge_ci --track origin/merge_ci
00:27:28 Switched to a new branch 'merge_ci'
00:27:28 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:27:28 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit f5f605baffb414a4440dd5ec8d3469f22097572c
00:27:28 Installing build dependencies: started
00:27:29 Installing build dependencies: finished with status 'done'
00:27:29 Getting requirements to build wheel: started
00:27:29 Getting requirements to build wheel: finished with status 'done'
00:27:29 Installing backend dependencies: started
00:27:31 Installing backend dependencies: finished with status 'done'
00:27:31 Preparing metadata (pyproject.toml): started
00:27:31 Preparing metadata (pyproject.toml): finished with status 'done'
00:27:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
00:27:31 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:27:31 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
00:27:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
00:27:31 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:31 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
00:27:32 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:32 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:27:32 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:32 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB)
00:27:32 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:27:33 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
00:27:33 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:27:33 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB)
00:27:33 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:27:33 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
00:27:33 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:27:33 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:33 Using cached click-8.5.1-py3-none-any.whl.metadata (2.6 kB)
00:27:34 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:34 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:27:34 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
00:27:34 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:34 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:27:34 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:27:34 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:34 Downloading importlib_metadata-10.2.0-py3-none-any.whl.metadata (4.6 kB)
00:27:34 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:34 Using cached s3fs-2026.9.0-py3-none-any.whl.metadata (1.2 kB)
00:27:34 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:34 Using cached zipp-4.1.2-py3-none-any.whl.metadata (3.6 kB)
00:27:35 Collecting lazy-importer>=0.1 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:35 Downloading lazy_importer-0.1.0-py3-none-any.whl.metadata (7.3 kB)
00:27:35 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:35 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
00:27:35 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:35 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
00:27:35 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0)
00:27:36 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
00:27:36 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
00:27:36 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.5)
00:27:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:27:36 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:27:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (13.0.0)
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00:27:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.4.2)
00:27:36 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:27:36 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached aiobotocore-3.10.0-py3-none-any.whl.metadata (32 kB)
00:27:36 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:27:36 Collecting botocore<1.43.118,>=1.43.115 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached botocore-1.43.117-py3-none-any.whl.metadata (5.6 kB)
00:27:36 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:36 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:27:37 Collecting multidict<8.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:37 Using cached multidict-7.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (6.1 kB)
00:27:37 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:27:37 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:37 Using cached wrapt-2.5.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.6 kB)
00:27:37 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:38 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
00:27:38 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:38 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:27:38 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:38 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
00:27:38 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:38 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:27:38 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:38 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (25 kB)
00:27:39 Collecting yarl<2.0,>=1.25.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:27:39 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:39 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:27:39 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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00:27:39 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:39 Using cached lazy_loader-0.6-py3-none-any.whl.metadata (6.0 kB)
00:27:40 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:40 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:27:40 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:40 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.2 kB)
00:27:40 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:27:40 Using cached numcodecs-0.16.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:27:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.2)
00:27:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.10.23)
00:27:40 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
00:27:40 Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB)
00:27:40 Using cached click-8.5.1-py3-none-any.whl (126 kB)
00:27:40 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:27:40 Using cached fsspec-2026.9.0-py3-none-any.whl (221 kB)
00:27:40 Downloading importlib_metadata-10.2.0-py3-none-any.whl (34 kB)
00:27:40 Downloading lazy_importer-0.1.0-py3-none-any.whl (12 kB)
00:27:40 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
00:27:40 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
00:27:40 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
00:27:40 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:27:40 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
00:27:41 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB)
00:27:41 Using cached aiobotocore-3.10.0-py3-none-any.whl (102 kB)
00:27:41 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB)
00:27:41 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:27:41 Using cached botocore-1.43.117-py3-none-any.whl (16.1 MB)
00:27:41 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:27:41 Using cached multidict-7.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (510 kB)
00:27:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:27:41 Using cached wrapt-2.5.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (240 kB)
00:27:41 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB)
00:27:41 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
00:27:41 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:27:41 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:27:41 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:27:41 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB)
00:27:41 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:27:41 Using cached imageio-2.38.1-py3-none-any.whl (328 kB)
00:27:42 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB)
00:27:42 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:27:42 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:27:42 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:27:42 Using cached toolz-1.2.0-py3-none-any.whl (60 kB)
00:27:42 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:27:42 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:27:42 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB)
00:27:42 Using cached numcodecs-0.16.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.3 MB)
00:27:42 Using cached zipp-4.1.2-py3-none-any.whl (10 kB)
00:27:42 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:27:42 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:27:42 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:27:43 Building wheels for collected packages: omero-cli-zarr
00:27:43 Building wheel for omero-cli-zarr (pyproject.toml): started
00:27:43 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:27:43 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+gf5f605b-py3-none-any.whl size=39539 sha256=9d38500105a0b60df98f7c683617f0248c672b59e503d2d9b8acd97420037b2a
00:27:43 Stored in directory: /tmp/pip-ephem-wheel-cache-kt7l_t1b/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:27:43 Successfully built omero-cli-zarr
00:27:43 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, lazy-importer, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:28:11 Attempting uninstall: python-dateutil
00:28:11 Found existing installation: python-dateutil 4.0.0
00:28:11 Uninstalling python-dateutil-4.0.0:
00:28:11 Successfully uninstalled python-dateutil-4.0.0
00:28:12 Attempting uninstall: pydantic-core
00:28:12 Found existing installation: pydantic_core 2.50.4
00:28:12 Uninstalling pydantic_core-2.50.4:
00:28:12 Successfully uninstalled pydantic_core-2.50.4
00:28:39 Attempting uninstall: pydantic
00:28:39 Found existing installation: pydantic 2.14.3
00:28:39 Uninstalling pydantic-2.14.3:
00:28:40 Successfully uninstalled pydantic-2.14.3
00:29:12
00:29:13 Successfully installed Deprecated-1.3.1 aiobotocore-3.10.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.117 click-8.5.1 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-10.2.0 jmespath-1.1.0 lazy-importer-0.1.0 lazy-loader-0.6 locket-1.0.0 multidict-7.2.1 networkx-3.6.1 numcodecs-0.16.6 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+gf5f605b partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 python-dateutil-2.9.0.post0 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.2 yarl-1.25.1 zarr-3.1.6 zipp-4.1.2
00:29:13
00:29:13 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:13 [notice] To update, run: pip install --upgrade pip
00:29:13 + pip install omero-certificates
00:29:14 Collecting omero-certificates
00:29:14 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:29:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-certificates) (5.23.0)
00:29:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:29:14 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:29:14 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
00:29:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (13.0.0)
00:29:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:29:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:29:14 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
00:29:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.2)
00:29:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2)
00:29:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20)
00:29:14 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0)
00:29:14 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.10.23)
00:29:14 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:29:14 Installing collected packages: omero-certificates
00:29:15 Successfully installed omero-certificates-0.4.0
00:29:15
00:29:15 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:15 [notice] To update, run: pip install --upgrade pip
00:29:15 + for x in *.tar.gz
00:29:15 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:29:15 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:29:15 Installing build dependencies: started
00:29:17 Installing build dependencies: finished with status 'done'
00:29:17 Getting requirements to build wheel: started
00:29:17 Getting requirements to build wheel: finished with status 'done'
00:29:17 Preparing metadata (pyproject.toml): started
00:29:17 Preparing metadata (pyproject.toml): finished with status 'done'
00:29:17 Requirement already satisfied: omero-py in ./.venv3/lib/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
00:29:17 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:29:17 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:29:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
00:29:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (13.0.0)
00:29:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:29:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:29:17 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
00:29:17 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.2)
00:29:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2)
00:29:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20)
00:29:17 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0)
00:29:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.10.23)
00:29:17 Building wheels for collected packages: omero-dropbox
00:29:17 Building wheel for omero-dropbox (pyproject.toml): started
00:29:18 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:29:18 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=4088fb3c8cad9a7ad5ea3c70431083c632c9cf9b7a529a1a6627776cdde48c38
00:29:18 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:29:18 Successfully built omero-dropbox
00:29:18 Installing collected packages: omero-dropbox
00:29:18 Successfully installed omero-dropbox-5.7.1.dev0
00:29:18
00:29:18 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:18 [notice] To update, run: pip install --upgrade pip
00:29:19 + for x in *.tar.gz
00:29:19 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:29:19 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:29:19 Installing build dependencies: started
00:29:20 Installing build dependencies: finished with status 'done'
00:29:20 Getting requirements to build wheel: started
00:29:21 Getting requirements to build wheel: finished with status 'done'
00:29:21 Preparing metadata (pyproject.toml): started
00:29:21 Preparing metadata (pyproject.toml): finished with status 'done'
00:29:21 Building wheels for collected packages: omero_marshal
00:29:21 Building wheel for omero_marshal (pyproject.toml): started
00:29:22 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:29:22 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=503a26ef405eabf1680ea4eab53b266b7c881b6524941186fc96fe77b38281aa
00:29:22 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:29:22 Successfully built omero_marshal
00:29:22 Installing collected packages: omero_marshal
00:29:24 Successfully installed omero_marshal-0.9.2.dev0
00:29:24
00:29:24 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:24 [notice] To update, run: pip install --upgrade pip
00:29:24 + for x in *.tar.gz
00:29:24 + pip install -U omero_py-5.23.1.dev0.tar.gz
00:29:24 Processing ./omero_py-5.23.1.dev0.tar.gz
00:29:25 Installing build dependencies: started
00:29:26 Installing build dependencies: finished with status 'done'
00:29:26 Getting requirements to build wheel: started
00:29:26 Getting requirements to build wheel: finished with status 'done'
00:29:26 Preparing metadata (pyproject.toml): started
00:29:27 Preparing metadata (pyproject.toml): finished with status 'done'
00:29:27 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
00:29:27 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
00:29:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
00:29:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (13.0.0)
00:29:27 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
00:29:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
00:29:27 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
00:29:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.2)
00:29:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2)
00:29:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20)
00:29:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0)
00:29:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.10.23)
00:29:27 Building wheels for collected packages: omero-py
00:29:27 Building wheel for omero-py (pyproject.toml): started
00:29:28 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:29:28 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787196 sha256=f1ffa082127df15a425359927bdd59f3aaddfb26869d109e74f73f7416b6670b
00:29:28 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
00:29:28 Successfully built omero-py
00:29:28 Installing collected packages: omero-py
00:29:28 Attempting uninstall: omero-py
00:29:28 Found existing installation: omero-py 5.23.0
00:29:29 Uninstalling omero-py-5.23.0:
00:29:38 Successfully uninstalled omero-py-5.23.0
00:29:52 Successfully installed omero-py-5.23.1.dev0
00:29:52
00:29:52 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:52 [notice] To update, run: pip install --upgrade pip
00:29:52 + for x in *.tar.gz
00:29:52 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:29:53 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:29:53 Installing build dependencies: started
00:29:54 Installing build dependencies: finished with status 'done'
00:29:54 Getting requirements to build wheel: started
00:29:55 Getting requirements to build wheel: finished with status 'done'
00:29:55 Preparing metadata (pyproject.toml): started
00:29:55 Preparing metadata (pyproject.toml): finished with status 'done'
00:29:55 Building wheels for collected packages: omero-scripts
00:29:55 Building wheel for omero-scripts (pyproject.toml): started
00:29:55 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:29:55 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137639 sha256=4a13453695b42cfa6b6fe079c25f39499d0fc9af4e863660c0e91d50b8b63744
00:29:55 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:29:55 Successfully built omero-scripts
00:29:56 Installing collected packages: omero-scripts
00:29:56 Successfully installed omero-scripts-5.10.1.dev0
00:29:56
00:29:56 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:29:56 [notice] To update, run: pip install --upgrade pip
00:29:56 + for x in *.tar.gz
00:29:56 + pip install -U omero_web-5.33.4.dev0.tar.gz
00:29:57 Processing ./omero_web-5.33.4.dev0.tar.gz
00:29:57 Installing build dependencies: started
00:29:59 Installing build dependencies: finished with status 'done'
00:29:59 Getting requirements to build wheel: started
00:29:59 Getting requirements to build wheel: finished with status 'done'
00:29:59 Preparing metadata (pyproject.toml): started
00:29:59 Preparing metadata (pyproject.toml): finished with status 'done'
00:29:59 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (5.23.1.dev0)
00:29:59 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.4.dev0)
00:29:59 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl.metadata (30 kB)
00:30:00 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.4.dev0)
00:30:00 Using cached django-5.2.19-py3-none-any.whl.metadata (4.1 kB)
00:30:00 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.4.dev0)
00:30:00 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:30:00 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.4.dev0)
00:30:00 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:30:00 Collecting whitenoise>=5.3.0 (from omero-web==5.33.4.dev0)
00:30:00 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:30:00 Collecting gunicorn>=19.3 (from omero-web==5.33.4.dev0)
00:30:00 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB)
00:30:00 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (0.9.2.dev0)
00:30:00 Requirement already satisfied: Pillow in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (13.0.0)
00:30:00 Requirement already satisfied: pytz in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (2026.6)
00:30:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (4.4.2)
00:30:00 Requirement already satisfied: packaging in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (26.3)
00:30:01 Collecting importlib-resources (from omero-web==5.33.4.dev0)
00:30:01 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
00:30:01 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:30:01 Using cached asgiref-3.13.0-py3-none-any.whl.metadata (12 kB)
00:30:01 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:30:01 Using cached sqlparse-0.6.1-py3-none-any.whl.metadata (6.9 kB)
00:30:01 Requirement already satisfied: setuptools in ./.venv3/lib/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0) (79.0.1)
00:30:01 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0)
00:30:01 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
00:30:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.4.4)
00:30:01 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.0.0)
00:30:01 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.4.6)
00:30:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (6.0.3)
00:30:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.6.5)
00:30:01 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.34.2)
00:30:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.5.2)
00:30:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.20)
00:30:01 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.8.0)
00:30:01 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2026.10.23)
00:30:01 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:30:01 Using cached django-5.2.19-py3-none-any.whl (8.3 MB)
00:30:01 Using cached asgiref-3.13.0-py3-none-any.whl (27 kB)
00:30:01 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl (36 kB)
00:30:01 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:30:01 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB)
00:30:01 Using cached sqlparse-0.6.1-py3-none-any.whl (51 kB)
00:30:01 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:30:01 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
00:30:02 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
00:30:02 Building wheels for collected packages: omero-web
00:30:02 Building wheel for omero-web (pyproject.toml): started
00:30:03 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:30:03 Created wheel for omero-web: filename=omero_web-5.33.4.dev0-py3-none-any.whl size=2820612 sha256=1630ee417c0a8dfa14572a495f3a3a9e88c627a33b4d61c48d1de79410e504cd
00:30:03 Stored in directory: /home/omero/.cache/pip/wheels/77/9e/f5/52a9e67ca1a8b7bccc74bb6768e254cc090a07d1bf56bba985
00:30:03 Successfully built omero-web
00:30:03 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:30:59
00:30:59 Successfully installed Django-5.2.19 asgiref-3.13.0 concurrent-log-handler-0.9.31 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.4.dev0 sqlparse-0.6.1 wheel-0.48.0 whitenoise-6.12.0
00:30:59
00:30:59 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:59 [notice] To update, run: pip install --upgrade pip
00:30:59 + wget https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:30:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:30:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:31:01 --2026-11-10 00:31:01-- https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:31:01 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
00:31:01 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
00:31:01 HTTP request sent, awaiting response... 200 OK
00:31:01 Length: 133725 (131K) [text/plain]
00:31:01 Saving to: ‘Figure_To_Pdf.py’
00:31:01
00:31:01 0K .......... .......... .......... .......... .......... 38% 2.89M 0s
00:31:01 50K .......... .......... .......... .......... .......... 76% 10.3M 0s
00:31:01 100K .......... .......... .......... 100% 2.99M=0.03s
00:31:01
00:31:01 2026-11-10 00:31:01 (4.03 MB/s) - ‘Figure_To_Pdf.py’ saved [133725/133725]
00:31:01
00:31:01 + chmod 755 Figure_To_Pdf.py
00:31:01 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:31:01 + omero config set omero.db.name OMERO-server
00:31:09 + omero config set omero.db.host pg
00:31:14 + omero config set omero.db.user postgres
00:31:19 + omero config set omero.data.dir /home/omero/omero-server-data
00:31:24 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:31:29 + omero config set omero.db.poolsize 25
00:31:35 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:31:40 + omero config set omero.security.trustStorePassword changeit
00:31:45 + omero config set omero.mail.config true
00:31:50 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:31:54 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:31:59 + omero certificates
00:32:03 OpenSSL 3.5.8 25 Aug 2026 (Library: OpenSSL 3.5.8 25 Aug 2026)
00:32:04 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:32:04 + '[' false = true ']'
00:32:04 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:32:04 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:32:04 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:32:04 2026-11-10 00:32:04,712 [ omego.db] DEBUG dbcommand => upgrade
00:32:04 2026-11-10 00:32:04,712 [ omego.db] DEBUG dbhost => localhost
00:32:04 2026-11-10 00:32:04,712 [ omego.db] DEBUG dbname => OMERO-server
00:32:04 2026-11-10 00:32:04,712 [ omego.db] DEBUG dbpass => omero
00:32:04 2026-11-10 00:32:04,713 [ omego.db] DEBUG dbuser => omero
00:32:04 2026-11-10 00:32:04,713 [ omego.db] DEBUG rootpass => omero
00:32:04 2026-11-10 00:32:04,713 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:32:04 2026-11-10 00:32:04,714 [omego.extern] INFO Executing : omero version
00:32:09 OMERO.py version:
00:32:09 OMERO.server version:
00:32:09 5.6.3-689-82f58e45dc-ice36-b121
00:32:09 5.23.1.dev0
00:32:09 2026-11-10 00:32:09,823 [omego.extern] INFO Completed [5.109 s]
00:32:09 2026-11-10 00:32:09,824 [omego.extern] DEBUG Using omero CLI from omero
00:32:09 2026-11-10 00:32:09,824 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:32:09 2026-11-10 00:32:09,824 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:32:09 2026-11-10 00:32:09,824 [omego.extern] INFO Executing : omero config get --show-password
00:32:14 2026-11-10 00:32:14,659 [omego.extern] INFO Completed [4.835 s]
00:32:14 2026-11-10 00:32:14,659 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:32:14 2026-11-10 00:32:14,659 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:32:14 2026-11-10 00:32:14,706 [omego.extern] INFO Completed [0.046 s]
00:32:14 2026-11-10 00:32:14,706 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n'
00:32:14 2026-11-10 00:32:14,706 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15
00:32:14
00:32:14 2026-11-10 00:32:14,706 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:32:14 2026-11-10 00:32:14,706 [omego.extern] INFO Executing : omero config get --show-password
00:32:19 2026-11-10 00:32:19,619 [omego.extern] INFO Completed [4.913 s]
00:32:19 2026-11-10 00:32:19,619 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:32:19 2026-11-10 00:32:19,619 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:32:19 2026-11-10 00:32:19,654 [omego.extern] INFO Completed [0.034 s]
00:32:19 2026-11-10 00:32:19,654 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n'
00:32:19 2026-11-10 00:32:19,654 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:32:19 2026-11-10 00:32:19,654 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:32:19 2026-11-10 00:32:19,654 [omego.extern] INFO Executing : omero config get --show-password
00:32:24 2026-11-10 00:32:24,497 [omego.extern] INFO Completed [4.843 s]
00:32:24 2026-11-10 00:32:24,497 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:32:24 2026-11-10 00:32:24,497 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:32:24 2026-11-10 00:32:24,634 [omego.extern] INFO Completed [0.136 s]
00:32:24 2026-11-10 00:32:24,634 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:32:24 2026-11-10 00:32:24,634 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:32:24 2026-11-10 00:32:24,693 [ omego.db] INFO Database is already at OMERO5.4__0
00:32:24 + export LANG=en_US.UTF-8
00:32:24 + LANG=en_US.UTF-8
00:32:24 + export LANGUAGE=en_US:en
00:32:24 + LANGUAGE=en_US:en
00:32:24 + export LC_ALL=en_US.UTF-8
00:32:24 + LC_ALL=en_US.UTF-8
00:32:24 + BUILD_ID=DONT_KILL_ME
00:32:24 + omero admin start
00:32:37 No descriptor given. Using etc/grid/default.xml
00:32:49 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:32:49 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:32:49 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:32:49 Waiting on startup. Use CTRL-C to exit
00:32:49 + omero admin waitup
00:32:55 Waiting on startup. Use CTRL-C to exit
00:32:55 + omero admin diagnostics
00:33:00
00:33:00 ================================================================================
00:33:00 OMERO Diagnostics (admin)
00:33:00 ================================================================================
00:33:00
00:33:00 Commands: java -version 21.0.13 (/usr/bin/java)
00:33:00 Commands: python -V 3.11.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:33:00 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:33:00 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:33:00 Commands: psql --version 16.15 (/usr/bin/psql)
00:33:00 Commands: openssl version 3.5.825 (/usr/bin/openssl)
00:33:00
00:33:00 Component: OMERO.py 5.23.1.dev0
00:33:00 Component: OMERO.server 5.6.3-689-82f58e45dc-ice36-b121
00:33:00
00:33:00 Server: icegridnode running
00:33:00 Server: Blitz-0 active (pid = 11630, enabled)
00:33:00 Server: Indexer-0 active (pid = 11649, enabled)
00:33:00 Server: OMERO.Glacier2 active (pid = 11655, enabled)
00:33:00 Server: OMERO.IceStorm active (pid = 11681, enabled)
00:33:00 Server: Processor-0 activating (enabled)
00:33:00 Server: Tables-0 activating (enabled)
00:33:00
00:33:00 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:33:00 Log files: Blitz-0.log 22.9 KB errors=0 warnings=1
00:33:00 Log files: DropBox.log n/a
00:33:00 Log files: FileServer.log n/a
00:33:00 Log files: Indexer-0.log 2.6 KB
00:33:00 Log files: MonitorServer.log n/a
00:33:00 Log files: Processor-0.log 592 B
00:33:00 Log files: Tables-0.log 841 B
00:33:00 Log files: TestDropBox.log n/a
00:33:00 Log files: master.err empty
00:33:00 Log files: master.out 30.7 KB
00:33:00 Log files: Total size 0.06 MB
00:33:00
00:33:00
00:33:00 Environment:OMERO_HOME=(unset)
00:33:00 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:00 Environment:OMERO_NODE=(unset)
00:33:00 Environment:OMERO_MASTER=(unset)
00:33:00 Environment:OMERO_USERDIR=(unset)
00:33:00 Environment:OMERO_TMPDIR=(unset)
00:33:00 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:00 Environment:PYTHONPATH=(unset)
00:33:00 Environment:ICE_HOME=/opt/ice-3.6.5
00:33:00 Environment:LD_LIBRARY_PATH=(unset)
00:33:00 Environment:DYLD_LIBRARY_PATH=(unset)
00:33:00
00:33:00 OMERO SSL port:4064
00:33:00 OMERO TCP port:4063
00:33:00 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:33:00 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:33:00
00:33:00 JVM settings: Blitz-${index} -Xmx5007m
00:33:00 JVM settings: Indexer-${index} -Xmx3338m
00:33:00 JVM settings: PixelData-${index} -Xmx5007m
00:33:00 JVM settings: Repository-${index} -Xmx3338m
00:33:00
00:33:00 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:33:00 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:33:00 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:33:00 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:33:00 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:33:00 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:33:00 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:33:00 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:33:00 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:33:00 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:33:00 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:33:00 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.2-SNAPSHOT 29c734eb4918a622ac76d4c54cd28f184c4fd874
00:33:01 + deactivate
00:33:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:33:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:01 + export PATH
00:33:01 + unset _OLD_VIRTUAL_PATH
00:33:01 + '[' -n '' ']'
00:33:01 + hash -r
00:33:01 + '[' -n '' ']'
00:33:01 + unset VIRTUAL_ENV
00:33:01 + unset VIRTUAL_ENV_PROMPT
00:33:01 + '[' '!' '' = nondestructive ']'
00:33:01 + unset -f deactivate
00:33:01 Finished: SUCCESS
