00:46:21 Started by upstream project "Trigger" build number 178
00:46:21 originally caused by:
00:46:21 Started by timer
00:46:21 Running as SYSTEM
00:46:21 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:46:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11792934524092449381.sh
00:46:21 + source /home/settings.env
00:46:21 ++ OMERO_DB_HOST=pg
00:46:21 ++ OMERO_DB_USER=postgres
00:46:21 ++ OMERO_DB_PASS=
00:46:21 ++ OMERO_ROOT_PASS=omero
00:46:21 ++ OMERO_DATA_DIR=/OMERO
00:46:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:21 + OMERO_DB_NAME=OMERO-server
00:46:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:21 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:46:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:21 ++ deactivate nondestructive
00:46:21 ++ '[' -n '' ']'
00:46:21 ++ '[' -n '' ']'
00:46:21 ++ hash -r
00:46:21 ++ '[' -n '' ']'
00:46:21 ++ unset VIRTUAL_ENV
00:46:21 ++ unset VIRTUAL_ENV_PROMPT
00:46:21 ++ '[' '!' nondestructive = nondestructive ']'
00:46:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:21 ++ export VIRTUAL_ENV
00:46:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:21 ++ export PATH
00:46:21 ++ '[' -n '' ']'
00:46:21 ++ '[' -z '' ']'
00:46:21 ++ _OLD_VIRTUAL_PS1=
00:46:21 ++ PS1='(.venv3) '
00:46:21 ++ export PS1
00:46:21 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:21 ++ export VIRTUAL_ENV_PROMPT
00:46:21 ++ hash -r
00:46:21 + omero admin stop
00:46:23 Waiting on shutdown. Use CTRL-C to exit
00:46:23 .+ sleep 5
00:46:38 + deactivate
00:46:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:38 + export PATH
00:46:38 + unset _OLD_VIRTUAL_PATH
00:46:38 + '[' -n '' ']'
00:46:38 + hash -r
00:46:38 + '[' -n '' ']'
00:46:38 + unset VIRTUAL_ENV
00:46:38 + unset VIRTUAL_ENV_PROMPT
00:46:38 + '[' '!' '' = nondestructive ']'
00:46:38 + unset -f deactivate
00:46:38 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:39 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:43 + '[' false = true ']'
00:46:43 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:43 Skipping PURGE_DATA:CleanDbAndRepo
00:46:43 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:44 Copied 1 artifact from "OMERO-build" build number 136
00:46:45 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 127
00:46:45 Copied 2 artifacts from "OMERO-build-build" build number 145
00:46:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3321258645223612596.sh
00:46:45 + source /home/settings.env
00:46:45 ++ OMERO_DB_HOST=pg
00:46:45 ++ OMERO_DB_USER=postgres
00:46:45 ++ OMERO_DB_PASS=
00:46:45 ++ OMERO_ROOT_PASS=omero
00:46:45 ++ OMERO_DATA_DIR=/OMERO
00:46:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:45 + OMERO_DB_NAME=OMERO-server
00:46:45 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:45 + mkdir -p /home/omero/omero-server-data
00:46:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:45 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:45 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:45 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:45 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:45 ++ ls OMERO.server-5.6.3-594-a2f05aee67-ice36-b136.zip
00:46:45 + ZIP=OMERO.server-5.6.3-594-a2f05aee67-ice36-b136.zip
00:46:45 + '[' '!' -z '' ']'
00:46:45 + DIST=OMERO.server-5.6.3-594-a2f05aee67-ice36-b136
00:46:45 + unzip OMERO.server-5.6.3-594-a2f05aee67-ice36-b136.zip
00:46:45 Archive: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136.zip
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/blitz/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/grid/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/profiles/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/error/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/grid/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/janelia/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/matplotlib/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/ncsa_paledit/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/seaborn/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/luts/wcif/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/analysis_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/annotation_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/export_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/figure_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/import_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/scripts/omero/util_scripts/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/server/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/share/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/share/licenses/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/misc/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__1/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__10/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__11/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__2/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__3/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__4/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__5/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__6/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__7/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__8/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3A__9/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3__4/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3__5/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3__6/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO3__7/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4.1__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4.2__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4.2__0/t/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4.3__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4.4__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO4__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.0__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.1__1/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.2__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__1/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__2/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__3/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/var/
00:46:45 creating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/var/tmp/
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/LICENSE.txt
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/backup.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/blitz/mail-senders.example
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/blitz/mail-server.example
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/build.properties
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/env.bat
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/env.sh
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/hibernate.properties
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/ice.config
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/logback-cli.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/logback-indexing-cli.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/logback-indexing.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/logback.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/mime.types
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/node1.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/node2.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/omero.properties
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/profiles/psql
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/rollover.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/Windows.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/error/maintainance.html
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/grid/README
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/grid/default.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/grid/templates.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/grid/windefault.xml
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/ice.config
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/internal.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/master.cfg
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/templates/robot.template
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/etc/testdropbox.config
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/history.rst
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/OMEZarrReader.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/accessors-smart.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/activation.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aggdesigner-algorithm.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aircompressor.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/antlr.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aopalliance.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/apiguardian-api.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/asm.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/avatica-core.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/avatica-metrics.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aws-java-sdk-core.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aws-java-sdk-kms.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/aws-java-sdk-s3.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/base.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-anim.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-awt-util.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-bridge.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-codec.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-constants.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-css.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-dom.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-ext.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-gvt.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-i18n.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-parser.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-script.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-shared-resources.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-svg-dom.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-svggen.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-transcoder.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-util.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/batik-xml.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/btm.jar
00:46:45 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/lib/client/calcite-core.jar
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00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/psql-header.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/schema.sql
00:46:47 inflating: OMERO.server-5.6.3-594-a2f05aee67-ice36-b136/sql/psql/OMERO5.4__0/views.sql
00:46:47 + rm -f OMERO.server-5.6.3-594-a2f05aee67-ice36-b136.zip
00:46:47 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-a2f05aee67-ice36-b136 /home/omero/workspace/OMERO-server/OMERO.server
00:46:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:47 ++ deactivate nondestructive
00:46:47 ++ '[' -n '' ']'
00:46:47 ++ '[' -n '' ']'
00:46:47 ++ hash -r
00:46:47 ++ '[' -n '' ']'
00:46:47 ++ unset VIRTUAL_ENV
00:46:47 ++ unset VIRTUAL_ENV_PROMPT
00:46:47 ++ '[' '!' nondestructive = nondestructive ']'
00:46:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:47 ++ export VIRTUAL_ENV
00:46:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:47 ++ export PATH
00:46:47 ++ '[' -n '' ']'
00:46:47 ++ '[' -z '' ']'
00:46:47 ++ _OLD_VIRTUAL_PS1=
00:46:47 ++ PS1='(.venv3) '
00:46:47 ++ export PS1
00:46:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:47 ++ export VIRTUAL_ENV_PROMPT
00:46:47 ++ hash -r
00:46:47 + pip install -U pip
00:46:47 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:46:47 Collecting pip
00:46:47 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:46:47 Installing collected packages: pip
00:46:47 Attempting uninstall: pip
00:46:47 Found existing installation: pip 22.3.1
00:46:48 Uninstalling pip-22.3.1:
00:46:48 Successfully uninstalled pip-22.3.1
00:46:48 Successfully installed pip-26.0.1
00:46:48 WARNING: There was an error checking the latest version of pip.
00:46:48 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:46:49 Collecting zeroc-ice==3.6.5
00:46:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:46:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s 0:00:02
00:46:52 Installing collected packages: zeroc-ice
00:46:53 Successfully installed zeroc-ice-3.6.5
00:46:53 + pip install markdown
00:46:54 Collecting markdown
00:46:54 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:46:54 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:46:54 Installing collected packages: markdown
00:46:54 Successfully installed markdown-3.10.2
00:46:54 + pip install reportlab
00:46:54 Collecting reportlab
00:46:54 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:46:54 Collecting pillow>=9.0.0 (from reportlab)
00:46:54 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:46:54 Collecting charset-normalizer (from reportlab)
00:46:54 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
00:46:55 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:46:55 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:46:55 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
00:46:55 Installing collected packages: pillow, charset-normalizer, reportlab
00:46:55
00:46:55 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.4.10
00:46:56 + pip install omego
00:46:56 Collecting omego
00:46:56 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:46:56 Collecting future (from omego)
00:46:56 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:46:56 Collecting yaclifw>=0.1.1 (from omego)
00:46:56 Using cached yaclifw-0.2.0-py3-none-any.whl
00:46:56 Collecting six (from yaclifw>=0.1.1->omego)
00:46:56 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:46:56 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:46:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:46:56 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:46:56 Installing collected packages: six, future, yaclifw, omego
00:46:57
00:46:57 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:46:57 + pip install tables
00:46:57 Collecting tables
00:46:57 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:46:57 Collecting numpy>=1.20.0 (from tables)
00:46:57 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:46:57 Collecting numexpr>=2.6.2 (from tables)
00:46:57 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:46:57 Collecting packaging (from tables)
00:46:57 Using cached packaging-26.1-py3-none-any.whl.metadata (3.5 kB)
00:46:57 Collecting py-cpuinfo (from tables)
00:46:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:57 Collecting blosc2>=2.3.0 (from tables)
00:46:57 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
00:46:58 Collecting ndindex (from blosc2>=2.3.0->tables)
00:46:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:46:58 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:58 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:58 Collecting requests (from blosc2>=2.3.0->tables)
00:46:58 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB)
00:46:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
00:46:58 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:46:58 Using cached idna-3.13-py3-none-any.whl.metadata (8.0 kB)
00:46:58 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
00:46:58 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:46:58 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
00:46:58 Using cached certifi-2026.4.22-py3-none-any.whl.metadata (2.5 kB)
00:46:58 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:46:58 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
00:46:58 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:46:58 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:46:58 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:46:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:46:58 Using cached packaging-26.1-py3-none-any.whl (95 kB)
00:46:58 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:46:58 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
00:46:58 Using cached idna-3.13-py3-none-any.whl (68 kB)
00:46:58 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:46:58 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB)
00:46:58 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:47:01
00:47:01 Successfully installed blosc2-4.1.2 certifi-2026.4.22 idna-3.13 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.1 py-cpuinfo-9.0.0 requests-2.33.1 tables-3.11.1 urllib3-2.6.3
00:47:01 + pip install jinja2
00:47:02 Collecting jinja2
00:47:02 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:47:02 Collecting MarkupSafe>=2.0 (from jinja2)
00:47:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:47:02 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:47:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:47:02 Installing collected packages: MarkupSafe, jinja2
00:47:02
00:47:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:47:02 + pip install omero-py
00:47:02 Collecting omero-py
00:47:02 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
00:47:02 Collecting appdirs (from omero-py)
00:47:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:47:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:47:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4)
00:47:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0)
00:47:02 Collecting PyYAML (from omero-py)
00:47:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:47:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:47:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.33.1)
00:47:02 Collecting portalocker (from omero-py)
00:47:02 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:47:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
00:47:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.13)
00:47:02 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:47:02 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.4.22)
00:47:02 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
00:47:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:47:02 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:47:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:47:02 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:47:04
00:47:04 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
00:47:04 + pip install pyarrow
00:47:05 Collecting pyarrow
00:47:05 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:47:05 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (48.8 MB)
00:47:05 Installing collected packages: pyarrow
00:47:06 Successfully installed pyarrow-24.0.0
00:47:07 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:47:07 Collecting omero-metadata
00:47:07 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-p3voqzjt/omero-metadata_1570c987987f467baae2319c0d1c748b
00:47:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-p3voqzjt/omero-metadata_1570c987987f467baae2319c0d1c748b
00:47:08 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit eb4f97592b4fde64615d8636d86ed8bbe2c4902d
00:47:08 Installing build dependencies: started
00:47:08 Installing build dependencies: finished with status 'done'
00:47:08 Getting requirements to build wheel: started
00:47:09 Getting requirements to build wheel: finished with status 'done'
00:47:09 Preparing metadata (pyproject.toml): started
00:47:09 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
00:47:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:47:09 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:47:09 Collecting pandas (from omero-metadata)
00:47:09 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:47:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:47:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4)
00:47:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0)
00:47:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:47:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.33.1)
00:47:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:47:09 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:47:09 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:47:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:47:09 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:47:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
00:47:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.13)
00:47:09 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:47:09 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.4.22)
00:47:09 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:47:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:47:09 Building wheels for collected packages: omero-metadata
00:47:09 Building wheel for omero-metadata (pyproject.toml): started
00:47:10 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:47:10 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=b1832b1b9fdf61dc7cd82906a7082dfd11eace73c431037842a1838aa4ca0689
00:47:10 Stored in directory: /tmp/pip-ephem-wheel-cache-r28l13x9/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:47:10 Successfully built omero-metadata
00:47:10 Installing collected packages: python-dateutil, pandas, omero-metadata
00:47:14
00:47:14 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.2 python-dateutil-2.9.0.post0
00:47:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:47:14 Collecting omero-cli-render
00:47:14 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-p_y5y6e8/omero-cli-render_bd3c195faece4e67b9078257183e8612
00:47:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-p_y5y6e8/omero-cli-render_bd3c195faece4e67b9078257183e8612
00:47:15 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:16 Switched to a new branch 'merge_ci'
00:47:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:16 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit db29cb4c6e061c569acee14f78cc0b7f919e75e1
00:47:16 Installing build dependencies: started
00:47:17 Installing build dependencies: finished with status 'done'
00:47:17 Getting requirements to build wheel: started
00:47:18 Getting requirements to build wheel: finished with status 'done'
00:47:18 Preparing metadata (pyproject.toml): started
00:47:18 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:47:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
00:47:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:47:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:47:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4)
00:47:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0)
00:47:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:47:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.33.1)
00:47:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:47:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
00:47:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.13)
00:47:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:47:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.4.22)
00:47:18 Building wheels for collected packages: omero-cli-render
00:47:18 Building wheel for omero-cli-render (pyproject.toml): started
00:47:19 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:47:19 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=d97da1c1bb3fb0e67675c41deef10af044d3c7421d341d5121ea89e129482778
00:47:19 Stored in directory: /tmp/pip-ephem-wheel-cache-zdxzjela/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:47:19 Successfully built omero-cli-render
00:47:19 Installing collected packages: omero-cli-render
00:47:19 Successfully installed omero-cli-render-0.8.2.dev0
00:47:19 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:47:20 Collecting omero-cli-duplicate
00:47:20 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-xaxci1r_/omero-cli-duplicate_d5b8575afb5e4f91b8f02cd4fa339367
00:47:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-xaxci1r_/omero-cli-duplicate_d5b8575afb5e4f91b8f02cd4fa339367
00:47:20 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:21 Switched to a new branch 'merge_ci'
00:47:21 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:21 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6a2bab4f5f73c0c128261b1f8a7862325c6ac63e
00:47:21 Installing build dependencies: started
00:47:22 Installing build dependencies: finished with status 'done'
00:47:22 Getting requirements to build wheel: started
00:47:22 Getting requirements to build wheel: finished with status 'done'
00:47:22 Preparing metadata (pyproject.toml): started
00:47:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:22 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
00:47:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:47:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:47:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4)
00:47:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0)
00:47:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:47:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:47:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.33.1)
00:47:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:47:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7)
00:47:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.13)
00:47:22 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:47:22 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.4.22)
00:47:22 Building wheels for collected packages: omero-cli-duplicate
00:47:22 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:47:23 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:47:23 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=dc97f352dbfc68d7c02c5dc66080c079fda8d7a676ab48080c39be3dfec1ff6f
00:47:23 Stored in directory: /tmp/pip-ephem-wheel-cache-zlwocp89/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:47:23 Successfully built omero-cli-duplicate
00:47:23 Installing collected packages: omero-cli-duplicate
00:47:23 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:47:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:47:23 Collecting omero-cli-zarr
00:47:23 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-z8h_6sew/omero-cli-zarr_433e8c67be674c05af91c92bd8228e0a
00:47:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-z8h_6sew/omero-cli-zarr_433e8c67be674c05af91c92bd8228e0a
00:47:24 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:24 Switched to a new branch 'merge_ci'
00:47:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:24 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 59092c414bc3fd4a2f56a715b60493c346ee24ad
00:47:24 Installing build dependencies: started
00:47:25 Installing build dependencies: finished with status 'done'
00:47:25 Getting requirements to build wheel: started
00:47:25 Getting requirements to build wheel: finished with status 'done'
00:47:25 Installing backend dependencies: started
00:47:26 Installing backend dependencies: finished with status 'done'
00:47:26 Preparing metadata (pyproject.toml): started
00:47:27 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
00:47:27 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:47:27 Using cached ome_zarr-0.16.0-py3-none-any.whl.metadata (2.9 kB)
00:47:27 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.4)
00:47:27 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:27 Using cached dask-2026.3.0-py3-none-any.whl.metadata (3.9 kB)
00:47:27 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:27 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:47:27 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:27 Using cached fsspec-2026.3.0-py3-none-any.whl.metadata (10 kB)
00:47:28 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.33.1)
00:47:28 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:47:28 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:47:28 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:47:28 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:47:28 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached click-8.3.3-py3-none-any.whl.metadata (2.6 kB)
00:47:28 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:47:28 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.1)
00:47:28 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:47:28 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:47:28 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
00:47:28 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached s3fs-2026.3.0-py3-none-any.whl.metadata (1.2 kB)
00:47:28 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached zipp-3.23.1-py3-none-any.whl.metadata (3.6 kB)
00:47:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:47:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:47:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.2.0)
00:47:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:47:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:47:28 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:47:28 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached aiobotocore-3.5.0-py3-none-any.whl.metadata (27 kB)
00:47:28 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:47:28 Collecting botocore<1.42.92,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached botocore-1.42.91-py3-none-any.whl.metadata (5.9 kB)
00:47:28 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:47:28 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:28 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:47:29 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:47:29 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:47:29 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:47:29 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:47:29 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
00:47:29 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:47:29 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:29 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:47:30 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:30 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.92,>=1.42.90->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:47:30 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:47:30 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.13)
00:47:30 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:47:30 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:47:30 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:47:30 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
00:47:30 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:47:30 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
00:47:30 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:47:30 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:47:30 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:30 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:47:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.7)
00:47:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.4.22)
00:47:30 Using cached ome_zarr-0.16.0-py3-none-any.whl (46 kB)
00:47:30 Using cached dask-2026.3.0-py3-none-any.whl (1.5 MB)
00:47:30 Using cached click-8.3.3-py3-none-any.whl (110 kB)
00:47:30 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:47:30 Using cached fsspec-2026.3.0-py3-none-any.whl (202 kB)
00:47:30 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
00:47:30 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:47:30 Using cached s3fs-2026.3.0-py3-none-any.whl (32 kB)
00:47:30 Using cached aiobotocore-3.5.0-py3-none-any.whl (88 kB)
00:47:30 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
00:47:30 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:47:30 Using cached botocore-1.42.91-py3-none-any.whl (14.9 MB)
00:47:30 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:47:30 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:47:30 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:47:30 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
00:47:30 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:47:30 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:47:30 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:47:30 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:47:30 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:47:30 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:47:30 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
00:47:30 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
00:47:30 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:47:30 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:47:30 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:47:30 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:47:30 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:47:30 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:47:30 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:47:30 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:47:30 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:47:30 Using cached zipp-3.23.1-py3-none-any.whl (10 kB)
00:47:30 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:47:30 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:47:30 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:47:31 Building wheels for collected packages: omero-cli-zarr
00:47:31 Building wheel for omero-cli-zarr (pyproject.toml): started
00:47:31 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:47:31 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g59092c4-py3-none-any.whl size=38289 sha256=b21c560c737f2f98fe4604a7df177c71a3a058d614c55de891a9e3b07cb1b8b4
00:47:31 Stored in directory: /tmp/pip-ephem-wheel-cache-kc4ffden/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:47:31 Successfully built omero-cli-zarr
00:47:31 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:40
00:47:40 Successfully installed Deprecated-1.3.1 aiobotocore-3.5.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.42.91 click-8.3.3 cloudpickle-3.1.2 dask-2026.3.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.3.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.16.0 omero-cli-zarr-0.5.5.dev162+g59092c4 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.3.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.6 zipp-3.23.1
00:47:41 + pip install omero-certificates
00:47:41 Collecting omero-certificates
00:47:41 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
00:47:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.4)
00:47:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.2.0)
00:47:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.33.1)
00:47:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7)
00:47:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.13)
00:47:41 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:41 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.4.22)
00:47:41 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:41 Installing collected packages: omero-certificates
00:47:41 Successfully installed omero-certificates-0.4.0
00:47:41 + for x in *.tar.gz
00:47:41 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:42 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:42 Installing build dependencies: started
00:47:43 Installing build dependencies: finished with status 'done'
00:47:43 Getting requirements to build wheel: started
00:47:43 Getting requirements to build wheel: finished with status 'done'
00:47:43 Preparing metadata (pyproject.toml): started
00:47:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:43 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
00:47:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.4)
00:47:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.2.0)
00:47:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:47:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.33.1)
00:47:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:47:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7)
00:47:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.13)
00:47:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:47:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.4.22)
00:47:43 Building wheels for collected packages: omero-dropbox
00:47:43 Building wheel for omero-dropbox (pyproject.toml): started
00:47:43 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:43 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=33b93f7f3b569cb7f3f0497c3bd90cc6bbc780fd9bfd558081787a1341adfb43
00:47:43 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:47:43 Successfully built omero-dropbox
00:47:43 Installing collected packages: omero-dropbox
00:47:44 Successfully installed omero-dropbox-5.7.1.dev0
00:47:44 + for x in *.tar.gz
00:47:44 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:47:44 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:47:44 Installing build dependencies: started
00:47:45 Installing build dependencies: finished with status 'done'
00:47:45 Getting requirements to build wheel: started
00:47:45 Getting requirements to build wheel: finished with status 'done'
00:47:45 Preparing metadata (pyproject.toml): started
00:47:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:45 Building wheels for collected packages: omero_marshal
00:47:45 Building wheel for omero_marshal (pyproject.toml): started
00:47:46 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:46 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=ee1e63b1314414214f2ae76e9e345c8200cd91df5eafde9eaf4c71c22bd36430
00:47:46 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:47:46 Successfully built omero_marshal
00:47:46 Installing collected packages: omero_marshal
00:47:46 Successfully installed omero_marshal-0.9.2.dev0
00:47:47 + for x in *.tar.gz
00:47:47 + pip install -U omero_py-5.22.2.dev0.tar.gz
00:47:47 Processing ./omero_py-5.22.2.dev0.tar.gz
00:47:47 Installing build dependencies: started
00:47:48 Installing build dependencies: finished with status 'done'
00:47:48 Getting requirements to build wheel: started
00:47:48 Getting requirements to build wheel: finished with status 'done'
00:47:48 Preparing metadata (pyproject.toml): started
00:47:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
00:47:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
00:47:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.4)
00:47:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.2.0)
00:47:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
00:47:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
00:47:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.33.1)
00:47:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
00:47:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7)
00:47:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.13)
00:47:49 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.6.3)
00:47:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.4.22)
00:47:49 Building wheels for collected packages: omero-py
00:47:49 Building wheel for omero-py (pyproject.toml): started
00:47:50 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:50 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2786692 sha256=1ef08e9aca64ec18a06e731cfa3e1b9c13bf4f930f8d3747955408630b585cc9
00:47:50 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
00:47:50 Successfully built omero-py
00:47:50 Installing collected packages: omero-py
00:47:50 Attempting uninstall: omero-py
00:47:50 Found existing installation: omero-py 5.22.1
00:47:50 Uninstalling omero-py-5.22.1:
00:47:50 Successfully uninstalled omero-py-5.22.1
00:47:52 Successfully installed omero-py-5.22.2.dev0
00:47:52 + for x in *.tar.gz
00:47:52 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:47:52 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:47:52 Installing build dependencies: started
00:47:53 Installing build dependencies: finished with status 'done'
00:47:53 Getting requirements to build wheel: started
00:47:53 Getting requirements to build wheel: finished with status 'done'
00:47:53 Preparing metadata (pyproject.toml): started
00:47:54 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:54 Building wheels for collected packages: omero-scripts
00:47:54 Building wheel for omero-scripts (pyproject.toml): started
00:47:54 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:47:54 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=e59731896e1ceda2e1a2a2d8f1a38c0d104f18b264816539efacd77b6897b2d6
00:47:54 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:47:54 Successfully built omero-scripts
00:47:54 Installing collected packages: omero-scripts
00:47:54 Successfully installed omero-scripts-5.10.1.dev0
00:47:54 + for x in *.tar.gz
00:47:54 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:47:54 Processing ./omero_web-5.31.1.dev0.tar.gz
00:47:55 Installing build dependencies: started
00:47:56 Installing build dependencies: finished with status 'done'
00:47:56 Getting requirements to build wheel: started
00:47:56 Getting requirements to build wheel: finished with status 'done'
00:47:56 Preparing metadata (pyproject.toml): started
00:47:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:56 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.2.dev0)
00:47:56 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:47:56 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:47:56 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:47:56 Using cached django-5.2.13-py3-none-any.whl.metadata (4.1 kB)
00:47:56 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:47:56 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:47:56 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:47:56 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:47:56 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:47:56 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:47:56 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:47:56 Using cached gunicorn-25.3.0-py3-none-any.whl.metadata (5.5 kB)
00:47:56 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:47:56 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.2.0)
00:47:57 Collecting pytz (from omero-web==5.31.1.dev0)
00:47:57 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
00:47:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:47:57 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.1)
00:47:57 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:47:57 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
00:47:57 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:47:57 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:47:57 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:47:57 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:47:57 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:47:57 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:47:57 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
00:47:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:47:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:47:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.4)
00:47:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:47:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:47:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.33.1)
00:47:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.7)
00:47:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.13)
00:47:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:47:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.4.22)
00:47:57 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:47:57 Using cached django-5.2.13-py3-none-any.whl (8.3 MB)
00:47:57 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:47:57 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:47:57 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:47:57 Using cached gunicorn-25.3.0-py3-none-any.whl (208 kB)
00:47:57 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:47:57 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:47:57 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
00:47:57 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
00:47:57 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
00:47:57 Building wheels for collected packages: omero-web
00:47:57 Building wheel for omero-web (pyproject.toml): started
00:47:58 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:47:58 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819315 sha256=9bb7603ff548598ab416d19552d17661e6c793918aa0a65bc694bb50e9e9a516
00:47:58 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:47:58 Successfully built omero-web
00:47:58 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:48:01
00:48:01 Successfully installed Django-5.2.13 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.3.0 importlib-resources-7.1.0 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
00:48:01 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:48:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:48:01 --2026-04-24 00:48:01-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:01 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ...
00:48:01 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:48:01 HTTP request sent, awaiting response... 200 OK
00:48:01 Length: 139337 (136K) [text/plain]
00:48:01 Saving to: ‘Figure_To_Pdf.py’
00:48:01
00:48:01 0K .......... .......... .......... .......... .......... 36% 2.54M 0s
00:48:01 50K .......... .......... .......... .......... .......... 73% 3.77M 0s
00:48:01 100K .......... .......... .......... ...... 100% 15.4M=0.03s
00:48:01
00:48:01 2026-04-24 00:48:01 (3.86 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
00:48:01
00:48:01 + chmod 755 Figure_To_Pdf.py
00:48:01 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:48:01 + omero config set omero.db.name OMERO-server
00:48:03 + omero config set omero.db.host pg
00:48:05 + omero config set omero.db.user postgres
00:48:07 + omero config set omero.data.dir /home/omero/omero-server-data
00:48:09 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:48:11 + omero config set omero.db.poolsize 25
00:48:13 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:48:15 + omero config set omero.security.trustStorePassword changeit
00:48:17 + omero config set omero.mail.config true
00:48:19 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:48:21 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:48:23 + omero certificates
00:48:25 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:48:25 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:48:25 + '[' false = true ']'
00:48:25 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:48:25 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:48:25 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG dbcommand => upgrade
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG dbhost => localhost
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG dbname => OMERO-server
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG dbpass => omero
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG dbuser => omero
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG rootpass => omero
00:48:25 2026-04-24 00:48:25,757 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:48:25 2026-04-24 00:48:25,758 [omego.extern] INFO Executing : omero version
00:48:27 OMERO.py version:
00:48:27 OMERO.server version:
00:48:27 5.6.3-594-a2f05aee67-ice36-b136
00:48:27 5.22.2.dev0
00:48:27 2026-04-24 00:48:27,846 [omego.extern] INFO Completed [2.088 s]
00:48:27 2026-04-24 00:48:27,846 [omego.extern] DEBUG Using omero CLI from omero
00:48:27 2026-04-24 00:48:27,846 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:48:27 2026-04-24 00:48:27,846 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:27 2026-04-24 00:48:27,846 [omego.extern] INFO Executing : omero config get --show-password
00:48:29 2026-04-24 00:48:29,843 [omego.extern] INFO Completed [1.996 s]
00:48:29 2026-04-24 00:48:29,843 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:29 2026-04-24 00:48:29,843 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:48:29 2026-04-24 00:48:29,848 [omego.extern] INFO Completed [0.005 s]
00:48:29 2026-04-24 00:48:29,849 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:48:29 2026-04-24 00:48:29,849 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:48:29
00:48:29 2026-04-24 00:48:29,849 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:29 2026-04-24 00:48:29,849 [omego.extern] INFO Executing : omero config get --show-password
00:48:31 2026-04-24 00:48:31,891 [omego.extern] INFO Completed [2.042 s]
00:48:31 2026-04-24 00:48:31,891 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:31 2026-04-24 00:48:31,891 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:48:31 2026-04-24 00:48:31,900 [omego.extern] INFO Completed [0.009 s]
00:48:31 2026-04-24 00:48:31,901 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n'
00:48:31 2026-04-24 00:48:31,901 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:31 2026-04-24 00:48:31,901 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:31 2026-04-24 00:48:31,901 [omego.extern] INFO Executing : omero config get --show-password
00:48:33 2026-04-24 00:48:33,878 [omego.extern] INFO Completed [1.977 s]
00:48:33 2026-04-24 00:48:33,878 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:33 2026-04-24 00:48:33,878 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:33 2026-04-24 00:48:33,888 [omego.extern] INFO Completed [0.009 s]
00:48:33 2026-04-24 00:48:33,888 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:33 2026-04-24 00:48:33,888 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:33 2026-04-24 00:48:33,889 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:33 + export LANG=en_US.UTF-8
00:48:33 + LANG=en_US.UTF-8
00:48:33 + export LANGUAGE=en_US:en
00:48:33 + LANGUAGE=en_US:en
00:48:33 + export LC_ALL=en_US.UTF-8
00:48:33 + LC_ALL=en_US.UTF-8
00:48:33 + BUILD_ID=DONT_KILL_ME
00:48:33 + omero admin start
00:48:38 No descriptor given. Using etc/grid/default.xml
00:48:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:48:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:48:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:48:46 Waiting on startup. Use CTRL-C to exit
00:48:46 + omero admin waitup
00:48:48 Waiting on startup. Use CTRL-C to exit
00:48:48 + omero admin diagnostics
00:48:50
00:48:50 ================================================================================
00:48:50 OMERO Diagnostics (admin)
00:48:50 ================================================================================
00:48:50
00:48:50 Commands: java -version 17.0.17 (/usr/bin/java)
00:48:50 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:48:50 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:48:50 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:48:50 Commands: psql --version 16.11 (/usr/bin/psql)
00:48:50 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:48:50
00:48:50 Component: OMERO.py 5.22.2.dev0
00:48:50 Component: OMERO.server 5.6.3-594-a2f05aee67-ice36-b136
00:48:50
00:48:50 Server: icegridnode running
00:48:50 Server: Blitz-0 active (pid = 28797, enabled)
00:48:50 Server: Indexer-0 activating (enabled)
00:48:50 Server: OMERO.Glacier2 active (pid = 28831, enabled)
00:48:50 Server: OMERO.IceStorm active (pid = 28859, enabled)
00:48:50 Server: Processor-0 active (pid = 28848, enabled)
00:48:50 Server: Tables-0 active (pid = 28860, enabled)
00:48:50
00:48:50 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:48:50 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1
00:48:50 Log files: DropBox.log n/a
00:48:50 Log files: FileServer.log n/a
00:48:50 Log files: Indexer-0.log 238 B
00:48:50 Log files: MonitorServer.log n/a
00:48:50 Log files: Processor-0.log 735 B
00:48:50 Log files: Tables-0.log 961 B
00:48:50 Log files: TestDropBox.log n/a
00:48:50 Log files: master.err empty
00:48:50 Log files: master.out 30.5 KB
00:48:50 Log files: Total size 0.07 MB
00:48:50
00:48:50
00:48:50 Environment:OMERO_HOME=(unset)
00:48:50 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:50 Environment:OMERO_NODE=(unset)
00:48:50 Environment:OMERO_MASTER=(unset)
00:48:50 Environment:OMERO_USERDIR=(unset)
00:48:50 Environment:OMERO_TMPDIR=(unset)
00:48:50 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:50 Environment:PYTHONPATH=(unset)
00:48:50 Environment:ICE_HOME=/opt/ice-3.6.5
00:48:50 Environment:LD_LIBRARY_PATH=(unset)
00:48:50 Environment:DYLD_LIBRARY_PATH=(unset)
00:48:50
00:48:50 OMERO SSL port:4064
00:48:50 OMERO TCP port:4063
00:48:50 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:48:50 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:48:50
00:48:50 JVM settings: Blitz-${index} -Xmx7200m
00:48:50 JVM settings: Indexer-${index} -Xmx4800m
00:48:50 JVM settings: PixelData-${index} -Xmx7200m
00:48:50 JVM settings: Repository-${index} -Xmx4800m
00:48:50
00:48:50 Jar: lib/server/formats-api.jar Bio-Formats API 8.6.0-SNAPSHOT 24 April 2026 8eeb1f50bf0c4ae1c782dbd9d9895c15c9f823a2
00:48:50 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.6.0-SNAPSHOT 24 April 2026 8eeb1f50bf0c4ae1c782dbd9d9895c15c9f823a2
00:48:50 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.6.0-SNAPSHOT 24 April 2026 8eeb1f50bf0c4ae1c782dbd9d9895c15c9f823a2
00:48:50 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 24 April 2026 af8ed483361bf2db48e30d2e0d03855dd83a057f
00:48:50 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:48:50 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:48:50 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:48:50 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:48:50 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:48:50 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:48:50 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:48:51 + deactivate
00:48:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:51 + export PATH
00:48:51 + unset _OLD_VIRTUAL_PATH
00:48:51 + '[' -n '' ']'
00:48:51 + hash -r
00:48:51 + '[' -n '' ']'
00:48:51 + unset VIRTUAL_ENV
00:48:51 + unset VIRTUAL_ENV_PROMPT
00:48:51 + '[' '!' '' = nondestructive ']'
00:48:51 + unset -f deactivate
00:48:51 Finished: SUCCESS
