10:39:55 Started by upstream project "Trigger" build number 147
10:39:55 originally caused by:
10:39:55 Started by user devspace
10:39:55 Running as SYSTEM
10:39:55 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:39:55 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16166901350524179408.sh
10:39:55 + source /home/settings.env
10:39:55 ++ OMERO_DB_HOST=pg
10:39:55 ++ OMERO_DB_USER=postgres
10:39:55 ++ OMERO_DB_PASS=
10:39:55 ++ OMERO_ROOT_PASS=omero
10:39:55 ++ OMERO_DATA_DIR=/OMERO
10:39:55 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:39:55 + OMERO_DB_NAME=OMERO-server
10:39:55 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:39:55 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:39:55 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:39:55 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:39:55 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:39:55 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:39:55 ++ deactivate nondestructive
10:39:55 ++ '[' -n '' ']'
10:39:55 ++ '[' -n '' ']'
10:39:55 ++ '[' -n /bin/bash -o -n '' ']'
10:39:55 ++ hash -r
10:39:55 ++ '[' -n '' ']'
10:39:55 ++ unset VIRTUAL_ENV
10:39:55 ++ '[' '!' nondestructive = nondestructive ']'
10:39:55 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:39:55 ++ export VIRTUAL_ENV
10:39:55 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:39:55 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:39:55 ++ export PATH
10:39:55 ++ '[' -n '' ']'
10:39:55 ++ '[' -z '' ']'
10:39:55 ++ _OLD_VIRTUAL_PS1=
10:39:55 ++ PS1='(.venv3) '
10:39:55 ++ export PS1
10:39:55 ++ '[' -n /bin/bash -o -n '' ']'
10:39:55 ++ hash -r
10:39:55 + omero admin stop
10:39:57 Waiting on shutdown. Use CTRL-C to exit
10:39:57 .+ sleep 5
10:40:13 + deactivate
10:40:13 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:40:13 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:40:13 + export PATH
10:40:13 + unset _OLD_VIRTUAL_PATH
10:40:13 + '[' -n '' ']'
10:40:13 + '[' -n /bin/bash -o -n '' ']'
10:40:13 + hash -r
10:40:13 + '[' -n '' ']'
10:40:13 + unset VIRTUAL_ENV
10:40:13 + '[' '!' '' = nondestructive ']'
10:40:13 + unset -f deactivate
10:40:13 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:40:13 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
10:40:18 + '[' false = true ']'
10:40:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:40:18 Skipping PURGE_DATA:CleanDbAndRepo
10:40:18 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:40:21 Copied 1 artifact from "OMERO-build" build number 125
10:40:21 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 124
10:40:21 Copied 2 artifacts from "OMERO-build-build" build number 127
10:40:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4403990459681219135.sh
10:40:21 + source /home/settings.env
10:40:21 ++ OMERO_DB_HOST=pg
10:40:21 ++ OMERO_DB_USER=postgres
10:40:21 ++ OMERO_DB_PASS=
10:40:21 ++ OMERO_ROOT_PASS=omero
10:40:21 ++ OMERO_DATA_DIR=/OMERO
10:40:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:40:21 + OMERO_DB_NAME=OMERO-server
10:40:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:40:21 + mkdir -p /home/omero/omero-server-data
10:40:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:40:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:40:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:40:21 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:40:21 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:40:21 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:40:21 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:40:21 ++ ls OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:40:21 + ZIP=OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:40:21 + '[' '!' -z '' ']'
10:40:21 + DIST=OMERO.server-5.6.3-484-22ee6d815f-ice36
10:40:21 + unzip OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:40:21 Archive: OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/blitz/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/grid/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/profiles/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/error/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/grid/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/luts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/luts/janelia/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/luts/ncsa_paledit/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/luts/wcif/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/analysis_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/annotation_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/export_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/figure_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/import_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/scripts/omero/util_scripts/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/server/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/share/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/share/licenses/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/misc/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__1/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__10/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__11/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__2/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__3/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__4/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__5/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__6/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__7/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__8/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3A__9/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3__4/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3__5/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3__6/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO3__7/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4.1__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4.2__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4.2__0/t/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4.3__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4.4__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO4__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.0__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.1__1/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.2__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.3__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4DEV__1/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4DEV__2/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4DEV__3/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/
10:40:21 creating: OMERO.server-5.6.3-484-22ee6d815f-ice36/var/
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/LICENSE.txt
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/backup.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/blitz/mail-senders.example
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/blitz/mail-server.example
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/build.properties
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/env.bat
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/env.sh
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/hibernate.properties
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/ice.config
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/logback-cli.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/logback-indexing-cli.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/logback-indexing.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/logback.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/mime.types
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/node1.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/node2.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/omero.properties
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/profiles/psql
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/rollover.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/Windows.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/error/maintainance.html
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/grid/README
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/grid/default.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/grid/templates.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/grid/windefault.xml
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/ice.config
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/internal.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/master.cfg
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/templates/robot.template
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/etc/testdropbox.config
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/history.rst
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/OMEZarrReader.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/activation.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aggdesigner-algorithm.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aircompressor.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/annotations.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/antlr.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aopalliance.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/avatica-core.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/avatica-metrics.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aws-java-sdk-core.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aws-java-sdk-kms.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/aws-java-sdk-s3.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/base.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-all.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-anim.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-awt-util.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-bridge.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-codec.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-constants.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-css.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-dom.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-ext.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-extension.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-gui-util.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-gvt.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-i18n.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-parser.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-rasterizer-ext.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-rasterizer.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-script.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-slideshow.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-squiggle-ext.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-squiggle.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-svg-dom.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-svgbrowser.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-svggen.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-svgpp.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-svgrasterizer.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-swing.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-transcoder.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-ttf2svg.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-util.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/batik-xml.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/btm.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/bufr.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/byte-buddy-agent.jar
10:40:21 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/lib/client/byte-buddy.jar
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10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/psql-header.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/schema.sql
10:40:24 inflating: OMERO.server-5.6.3-484-22ee6d815f-ice36/sql/psql/OMERO5.4__0/views.sql
10:40:24 + rm -f OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:40:24 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-484-22ee6d815f-ice36 /home/omero/workspace/OMERO-server/OMERO.server
10:40:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:40:24 ++ deactivate nondestructive
10:40:24 ++ '[' -n '' ']'
10:40:24 ++ '[' -n '' ']'
10:40:24 ++ '[' -n /bin/bash -o -n '' ']'
10:40:24 ++ hash -r
10:40:24 ++ '[' -n '' ']'
10:40:24 ++ unset VIRTUAL_ENV
10:40:24 ++ '[' '!' nondestructive = nondestructive ']'
10:40:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:40:24 ++ export VIRTUAL_ENV
10:40:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:40:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:40:24 ++ export PATH
10:40:24 ++ '[' -n '' ']'
10:40:24 ++ '[' -z '' ']'
10:40:24 ++ _OLD_VIRTUAL_PS1=
10:40:24 ++ PS1='(.venv3) '
10:40:24 ++ export PS1
10:40:24 ++ '[' -n /bin/bash -o -n '' ']'
10:40:24 ++ hash -r
10:40:24 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
10:40:25 Collecting zeroc-ice==3.6.5
10:40:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
10:40:27 Installing collected packages: zeroc-ice
10:40:28 Successfully installed zeroc-ice-3.6.5
10:40:28 + pip install -U pip future
10:40:28 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
10:40:29 Collecting pip
10:40:29 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
10:40:29 Collecting future
10:40:29 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:40:29 Installing collected packages: pip, future
10:40:29 Attempting uninstall: pip
10:40:29 Found existing installation: pip 21.2.3
10:40:29 Uninstalling pip-21.2.3:
10:40:29 Successfully uninstalled pip-21.2.3
10:40:31 Successfully installed future-1.0.0 pip-24.1.2
10:40:31 + pip install markdown
10:40:32 Collecting markdown
10:40:32 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
10:40:32 Collecting importlib-metadata>=4.4 (from markdown)
10:40:32 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
10:40:32 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
10:40:32 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
10:40:32 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
10:40:32 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
10:40:32 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
10:40:32 Installing collected packages: zipp, importlib-metadata, markdown
10:40:32 Successfully installed importlib-metadata-8.0.0 markdown-3.6 zipp-3.19.2
10:40:32 + pip install reportlab
10:40:33 Collecting reportlab
10:40:33 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
10:40:34 Collecting pillow>=9.0.0 (from reportlab)
10:40:34 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
10:40:34 Collecting chardet (from reportlab)
10:40:34 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
10:40:34 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
10:40:34 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
10:40:34 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
10:40:34 Installing collected packages: pillow, chardet, reportlab
10:40:36 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
10:40:36 + pip install omego
10:40:36 Collecting omego
10:40:36 Using cached omego-0.7.0-py3-none-any.whl
10:40:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
10:40:37 Collecting yaclifw>=0.1.1 (from omego)
10:40:37 Using cached yaclifw-0.2.0-py3-none-any.whl
10:40:37 Collecting six (from yaclifw>=0.1.1->omego)
10:40:37 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
10:40:37 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
10:40:37 Installing collected packages: six, yaclifw, omego
10:40:37 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
10:40:37 + pip install tables
10:40:37 Collecting tables
10:40:37 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
10:40:38 Collecting numpy>=1.19.0 (from tables)
10:40:38 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
10:40:38 Collecting numexpr>=2.6.2 (from tables)
10:40:38 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
10:40:38 Collecting packaging (from tables)
10:40:38 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
10:40:38 Collecting py-cpuinfo (from tables)
10:40:38 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:40:39 Collecting blosc2>=2.3.0 (from tables)
10:40:39 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
10:40:39 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
10:40:39 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
10:40:39 Collecting msgpack (from blosc2>=2.3.0->tables)
10:40:39 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
10:40:39 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
10:40:39 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
10:40:39 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
10:40:39 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
10:40:39 Using cached packaging-24.1-py3-none-any.whl (53 kB)
10:40:39 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
10:40:39 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
10:40:39 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
10:40:39 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
10:40:44 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.1 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
10:40:44 + pip install jinja2
10:40:45 Collecting jinja2
10:40:45 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
10:40:45 Collecting MarkupSafe>=2.0 (from jinja2)
10:40:45 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
10:40:45 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
10:40:45 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
10:40:45 Installing collected packages: MarkupSafe, jinja2
10:40:45 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
10:40:45 + pip install omero-py
10:40:46 Collecting omero-py
10:40:46 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB)
10:40:46 Collecting urllib3<2 (from omero-py)
10:40:46 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
10:40:46 Collecting appdirs (from omero-py)
10:40:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:40:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
10:40:46 Collecting numpy<2 (from omero-py)
10:40:46 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
10:40:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
10:40:46 Collecting PyYAML (from omero-py)
10:40:46 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
10:40:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
10:40:46 Collecting requests (from omero-py)
10:40:46 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
10:40:46 Collecting portalocker (from omero-py)
10:40:46 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
10:40:47 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
10:40:47 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
10:40:47 Collecting idna<4,>=2.5 (from requests->omero-py)
10:40:47 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
10:40:47 Collecting certifi>=2017.4.17 (from requests->omero-py)
10:40:47 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
10:40:47 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB)
10:40:47 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
10:40:47 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
10:40:47 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:40:47 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
10:40:47 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
10:40:47 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
10:40:47 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
10:40:47 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
10:40:47 Using cached idna-3.7-py3-none-any.whl (66 kB)
10:40:47 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
10:40:47 Attempting uninstall: numpy
10:40:47 Found existing installation: numpy 2.0.1
10:40:47 Uninstalling numpy-2.0.1:
10:40:47 Successfully uninstalled numpy-2.0.1
10:40:53 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19
10:40:53 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:40:54 Collecting omero-metadata
10:40:54 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-3cv4e1yd/omero-metadata_6e40a2efc8c2453a914e7bf326aa2574
10:40:54 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-3cv4e1yd/omero-metadata_6e40a2efc8c2453a914e7bf326aa2574
10:40:55 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit c262c6e5034c85122b8d3a2271d5597fba1ecfd7
10:40:55 Installing build dependencies: started
10:40:57 Installing build dependencies: finished with status 'done'
10:40:57 Getting requirements to build wheel: started
10:40:58 Getting requirements to build wheel: finished with status 'done'
10:40:58 Preparing metadata (pyproject.toml): started
10:40:58 Preparing metadata (pyproject.toml): finished with status 'done'
10:40:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4)
10:40:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
10:40:58 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
10:40:59 Collecting pandas (from omero-metadata)
10:40:59 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
10:40:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
10:40:59 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:40:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:40:59 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
10:40:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
10:40:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:40:59 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
10:40:59 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
10:40:59 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
10:40:59 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
10:40:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:40:59 Collecting pytz>=2020.1 (from pandas->omero-metadata)
10:40:59 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
10:40:59 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
10:40:59 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
10:40:59 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
10:40:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
10:40:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
10:40:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4)
10:40:59 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
10:40:59 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:40:59 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
10:40:59 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
10:41:00 Building wheels for collected packages: omero-metadata
10:41:00 Building wheel for omero-metadata (pyproject.toml): started
10:41:00 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:41:00 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=d978e6766812a44d0c16ea19127713d41d132791dc1d66694b4753facadfe476
10:41:00 Stored in directory: /tmp/pip-ephem-wheel-cache-xddtgk6v/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
10:41:00 Successfully built omero-metadata
10:41:00 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
10:41:07 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
10:41:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:41:08 Collecting omero-cli-render
10:41:08 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-fo322xop/omero-cli-render_a2a08e697cfb420b8d43369117dd7694
10:41:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-fo322xop/omero-cli-render_a2a08e697cfb420b8d43369117dd7694
10:41:09 Running command git checkout -b merge_ci --track origin/merge_ci
10:41:09 Switched to a new branch 'merge_ci'
10:41:09 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:41:09 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 18883f31ff1476dbdc831cd51ce3f508f871ab71
10:41:09 Installing build dependencies: started
10:41:12 Installing build dependencies: finished with status 'done'
10:41:12 Getting requirements to build wheel: started
10:41:12 Getting requirements to build wheel: finished with status 'done'
10:41:12 Preparing metadata (pyproject.toml): started
10:41:12 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
10:41:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4)
10:41:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
10:41:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:41:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:41:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
10:41:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
10:41:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:41:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
10:41:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
10:41:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
10:41:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
10:41:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4)
10:41:12 Building wheels for collected packages: omero-cli-render
10:41:12 Building wheel for omero-cli-render (pyproject.toml): started
10:41:13 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:41:13 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=f70660ee051b2fc440a06c59a3fc58b91292c41de84b16df838ff6ea4c92d04b
10:41:13 Stored in directory: /tmp/pip-ephem-wheel-cache-_4ouscih/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
10:41:13 Successfully built omero-cli-render
10:41:13 Installing collected packages: omero-cli-render
10:41:13 Successfully installed omero-cli-render-0.8.1.dev0
10:41:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:41:14 Collecting omero-cli-duplicate
10:41:14 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-2b0307yp/omero-cli-duplicate_3baa5a197fe041c3aa55418c5113a0a8
10:41:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-2b0307yp/omero-cli-duplicate_3baa5a197fe041c3aa55418c5113a0a8
10:41:15 Running command git checkout -b merge_ci --track origin/merge_ci
10:41:16 Switched to a new branch 'merge_ci'
10:41:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:41:16 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e69b5a2cab679818fe103081960873ab70c3968a
10:41:16 Installing build dependencies: started
10:41:18 Installing build dependencies: finished with status 'done'
10:41:18 Getting requirements to build wheel: started
10:41:19 Getting requirements to build wheel: finished with status 'done'
10:41:19 Preparing metadata (pyproject.toml): started
10:41:19 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:19 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4)
10:41:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
10:41:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:41:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:41:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
10:41:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
10:41:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
10:41:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:41:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
10:41:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
10:41:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
10:41:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
10:41:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4)
10:41:19 Building wheels for collected packages: omero-cli-duplicate
10:41:19 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:41:19 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:41:19 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=738de52830ce5177a2caf39150c51b47676e961f7b1ed939b3e1434dab1eb65c
10:41:19 Stored in directory: /tmp/pip-ephem-wheel-cache-7_0o6q1o/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
10:41:19 Successfully built omero-cli-duplicate
10:41:19 Installing collected packages: omero-cli-duplicate
10:41:19 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:41:20 + pip install omero-certificates
10:41:20 Collecting omero-certificates
10:41:20 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
10:41:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4)
10:41:20 Collecting distro==1.8.0 (from omero-certificates)
10:41:20 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
10:41:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
10:41:20 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:41:20 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:41:20 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
10:41:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
10:41:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
10:41:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:41:20 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
10:41:20 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
10:41:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
10:41:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
10:41:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4)
10:41:20 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
10:41:20 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
10:41:20 Installing collected packages: distro, omero-certificates
10:41:21 Successfully installed distro-1.8.0 omero-certificates-0.3.2
10:41:21 + for x in *.tar.gz
10:41:21 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:41:21 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:41:21 Installing build dependencies: started
10:41:24 Installing build dependencies: finished with status 'done'
10:41:24 Getting requirements to build wheel: started
10:41:24 Getting requirements to build wheel: finished with status 'done'
10:41:24 Preparing metadata (pyproject.toml): started
10:41:24 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:24 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4)
10:41:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
10:41:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:41:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:41:24 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
10:41:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
10:41:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1)
10:41:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:41:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
10:41:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
10:41:24 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
10:41:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7)
10:41:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4)
10:41:24 Building wheels for collected packages: omero-dropbox
10:41:24 Building wheel for omero-dropbox (pyproject.toml): started
10:41:25 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:41:25 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=afd5818aceb0163e1143bab16a18da914e631b0a4257a055d6990b0bcd7011aa
10:41:25 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
10:41:25 Successfully built omero-dropbox
10:41:25 Installing collected packages: omero-dropbox
10:41:25 Successfully installed omero-dropbox-5.7.1.dev0
10:41:25 + for x in *.tar.gz
10:41:25 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
10:41:26 Processing ./omero_marshal-0.9.1.dev0.tar.gz
10:41:26 Installing build dependencies: started
10:41:28 Installing build dependencies: finished with status 'done'
10:41:28 Getting requirements to build wheel: started
10:41:28 Getting requirements to build wheel: finished with status 'done'
10:41:28 Preparing metadata (pyproject.toml): started
10:41:29 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:29 Building wheels for collected packages: omero_marshal
10:41:29 Building wheel for omero_marshal (pyproject.toml): started
10:41:29 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:41:29 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=da4ac51178581582a0ea94742ab8d104651d79b59756b475ba04d2c951eff691
10:41:29 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
10:41:29 Successfully built omero_marshal
10:41:29 Installing collected packages: omero_marshal
10:41:29 Successfully installed omero_marshal-0.9.1.dev0
10:41:30 + for x in *.tar.gz
10:41:30 + pip install -U omero_py-5.19.5.dev0.tar.gz
10:41:30 Processing ./omero_py-5.19.5.dev0.tar.gz
10:41:31 Installing build dependencies: started
10:41:33 Installing build dependencies: finished with status 'done'
10:41:33 Getting requirements to build wheel: started
10:41:34 Getting requirements to build wheel: finished with status 'done'
10:41:34 Preparing metadata (pyproject.toml): started
10:41:34 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:34 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19)
10:41:34 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4)
10:41:34 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0)
10:41:34 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4)
10:41:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0)
10:41:34 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.1)
10:41:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5)
10:41:34 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3)
10:41:34 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1)
10:41:34 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2)
10:41:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.7)
10:41:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4)
10:41:34 Building wheels for collected packages: omero-py
10:41:34 Building wheel for omero-py (pyproject.toml): started
10:41:36 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:41:36 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782907 sha256=c295215c4f3dada3f8c8d124c33be39d6fb7294258f907d329364fd70b8c07d3
10:41:36 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16
10:41:36 Successfully built omero-py
10:41:37 Installing collected packages: omero-py
10:41:37 Attempting uninstall: omero-py
10:41:37 Found existing installation: omero-py 5.19.4
10:41:37 Uninstalling omero-py-5.19.4:
10:41:37 Successfully uninstalled omero-py-5.19.4
10:41:41 Successfully installed omero-py-5.19.5.dev0
10:41:41 + for x in *.tar.gz
10:41:41 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
10:41:42 Processing ./omero_scripts-5.8.3.dev0.tar.gz
10:41:42 Installing build dependencies: started
10:41:46 Installing build dependencies: finished with status 'done'
10:41:46 Getting requirements to build wheel: started
10:41:46 Getting requirements to build wheel: finished with status 'done'
10:41:46 Preparing metadata (pyproject.toml): started
10:41:46 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:46 Building wheels for collected packages: omero-scripts
10:41:46 Building wheel for omero-scripts (pyproject.toml): started
10:41:47 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:41:47 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116556 sha256=375e180bfdd58370587bdebe4f21278273df1a76677d7b50e6600f3abd018da5
10:41:47 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
10:41:47 Successfully built omero-scripts
10:41:47 Installing collected packages: omero-scripts
10:41:47 Successfully installed omero-scripts-5.8.3.dev0
10:41:47 + for x in *.tar.gz
10:41:47 + pip install -U omero_web-5.26.1.dev0.tar.gz
10:41:48 Processing ./omero_web-5.26.1.dev0.tar.gz
10:41:49 Installing build dependencies: started
10:41:52 Installing build dependencies: finished with status 'done'
10:41:52 Getting requirements to build wheel: started
10:41:52 Getting requirements to build wheel: finished with status 'done'
10:41:52 Preparing metadata (pyproject.toml): started
10:41:53 Preparing metadata (pyproject.toml): finished with status 'done'
10:41:53 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.5.dev0)
10:41:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
10:41:53 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
10:41:53 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
10:41:53 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB)
10:41:53 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
10:41:53 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
10:41:53 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
10:41:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:41:53 Collecting django-csp (from omero-web==5.26.1.dev0)
10:41:53 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
10:41:53 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
10:41:53 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
10:41:53 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
10:41:53 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
10:41:53 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
10:41:53 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0)
10:41:53 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1)
10:41:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1)
10:41:53 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
10:41:54 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
10:41:54 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
10:41:54 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
10:41:54 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
10:41:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19)
10:41:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
10:41:54 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
10:41:54 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4)
10:41:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
10:41:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
10:41:54 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
10:41:54 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
10:41:54 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
10:41:54 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
10:41:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
10:41:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4)
10:41:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:41:54 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
10:41:54 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
10:41:54 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB)
10:41:54 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
10:41:54 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
10:41:54 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
10:41:54 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
10:41:54 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
10:41:54 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
10:41:54 Building wheels for collected packages: omero-web
10:41:54 Building wheel for omero-web (pyproject.toml): started
10:41:56 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:41:56 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765253 sha256=b8a980ad0d3fe497e0178f74e1aae198af51f9a086ee9330d4fdeb66137c7278
10:41:56 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453
10:41:56 Successfully built omero-web
10:41:56 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
10:42:01 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
10:42:01 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:42:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:42:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:42:01 --2024-07-23 10:42:01-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:42:01 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ...
10:42:01 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
10:42:01 HTTP request sent, awaiting response... 200 OK
10:42:01 Length: 95703 (93K) [text/plain]
10:42:01 Saving to: ‘Figure_To_Pdf.py’
10:42:01
10:42:01 0K .......... .......... .......... .......... .......... 53% 2.31M 0s
10:42:01 50K .......... .......... .......... .......... ... 100% 15.3M=0.02s
10:42:01
10:42:01 2024-07-23 10:42:01 (3.81 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703]
10:42:01
10:42:01 + chmod 755 Figure_To_Pdf.py
10:42:01 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:42:01 + omero config set omero.db.name OMERO-server
10:42:04 + omero config set omero.db.host pg
10:42:07 + omero config set omero.db.user postgres
10:42:09 + omero config set omero.data.dir /home/omero/omero-server-data
10:42:11 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:42:13 + omero config set omero.db.poolsize 25
10:42:16 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:42:18 + omero config set omero.security.trustStorePassword changeit
10:42:21 + omero config set omero.mail.config true
10:42:23 + omero config set omero.mail.from qa@openmicroscopy.org.uk
10:42:26 + omero config set omero.mail.host smtp.dundee.ac.uk
10:42:28 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:42:31 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:42:33 + omero certificates
10:42:35 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
10:42:35 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:42:36 + '[' false = true ']'
10:42:36 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:42:36 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:42:36 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:42:36 2024-07-23 10:42:36,375 [ omego.db] DEBUG dbcommand => upgrade
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG dbhost => localhost
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG dbname => OMERO-server
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG dbpass => omero
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG dbuser => omero
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG rootpass => omero
10:42:36 2024-07-23 10:42:36,376 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:42:36 2024-07-23 10:42:36,376 [omego.extern] INFO Executing : omero version
10:42:38 OMERO.py version:
10:42:38 OMERO.server version:
10:42:38 5.6.3-484-22ee6d815f-ice36
10:42:38 5.19.5.dev0
10:42:38 2024-07-23 10:42:38,652 [omego.extern] INFO Completed [2.275 s]
10:42:38 2024-07-23 10:42:38,653 [omego.extern] DEBUG Using omero CLI from omero
10:42:38 2024-07-23 10:42:38,653 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:42:38 2024-07-23 10:42:38,653 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:42:38 2024-07-23 10:42:38,653 [omego.extern] INFO Executing : omero config get --show-password
10:42:41 2024-07-23 10:42:41,398 [omego.extern] INFO Completed [2.745 s]
10:42:41 2024-07-23 10:42:41,398 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:42:41 2024-07-23 10:42:41,398 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:42:41 2024-07-23 10:42:41,405 [omego.extern] INFO Completed [0.007 s]
10:42:41 2024-07-23 10:42:41,405 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
10:42:41 2024-07-23 10:42:41,406 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
10:42:41
10:42:41 2024-07-23 10:42:41,406 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:42:41 2024-07-23 10:42:41,406 [omego.extern] INFO Executing : omero config get --show-password
10:42:43 2024-07-23 10:42:43,311 [omego.extern] INFO Completed [1.905 s]
10:42:43 2024-07-23 10:42:43,311 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:42:43 2024-07-23 10:42:43,311 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:42:43 2024-07-23 10:42:43,328 [omego.extern] INFO Completed [0.017 s]
10:42:43 2024-07-23 10:42:43,329 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.4") at port "5432".\n'
10:42:43 2024-07-23 10:42:43,329 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:42:43 2024-07-23 10:42:43,329 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:42:43 2024-07-23 10:42:43,329 [omego.extern] INFO Executing : omero config get --show-password
10:42:45 2024-07-23 10:42:45,413 [omego.extern] INFO Completed [2.083 s]
10:42:45 2024-07-23 10:42:45,413 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:42:45 2024-07-23 10:42:45,413 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:42:45 2024-07-23 10:42:45,427 [omego.extern] INFO Completed [0.013 s]
10:42:45 2024-07-23 10:42:45,427 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:42:45 2024-07-23 10:42:45,428 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:42:45 2024-07-23 10:42:45,431 [ omego.db] INFO Database is already at OMERO5.4__0
10:42:45 + export LANG=en_US.UTF-8
10:42:45 + LANG=en_US.UTF-8
10:42:45 + export LANGUAGE=en_US:en
10:42:45 + LANGUAGE=en_US:en
10:42:45 + export LC_ALL=en_US.UTF-8
10:42:45 + LC_ALL=en_US.UTF-8
10:42:45 + BUILD_ID=DONT_KILL_ME
10:42:45 + omero admin start
10:42:57 No descriptor given. Using etc/grid/default.xml
10:43:10 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:43:10 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:43:10 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:43:10 Waiting on startup. Use CTRL-C to exit
10:43:11 + omero admin waitup
10:43:13 Waiting on startup. Use CTRL-C to exit
10:43:13 + omero admin diagnostics
10:43:16
10:43:16 ================================================================================
10:43:16 OMERO Diagnostics (admin)
10:43:16 ================================================================================
10:43:16
10:43:16 Commands: java -version 11.0.22 (/usr/bin/java)
10:43:16 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:43:16 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:43:16 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:43:16 Commands: psql --version 16.2 (/usr/bin/psql)
10:43:16 Commands: openssl version 3.0.71 (/usr/bin/openssl)
10:43:16
10:43:16 Component: OMERO.py 5.19.5.dev0
10:43:16 Component: OMERO.server 5.6.3-484-22ee6d815f-ice36
10:43:16
10:43:16 Server: icegridnode running
10:43:16 Server: Blitz-0 active (pid = 9763, enabled)
10:43:16 Server: Indexer-0 activating (enabled)
10:43:16 Server: OMERO.Glacier2 active (pid = 9790, enabled)
10:43:16 Server: OMERO.IceStorm active (pid = 9819, enabled)
10:43:16 Server: Processor-0 activating (enabled)
10:43:16 Server: Tables-0 activating (enabled)
10:43:16
10:43:16 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:43:16 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
10:43:16 Log files: DropBox.log n/a
10:43:16 Log files: FileServer.log n/a
10:43:16 Log files: Indexer-0.log 598 B
10:43:16 Log files: MonitorServer.log n/a
10:43:16 Log files: Processor-0.log 592 B
10:43:16 Log files: Tables-0.log 841 B
10:43:16 Log files: TestDropBox.log n/a
10:43:16 Log files: master.err 180 B
10:43:16 Log files: master.out 30.1 KB
10:43:16 Log files: Total size 0.05 MB
10:43:16
10:43:16
10:43:16 Environment:OMERO_HOME=(unset)
10:43:16 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:43:16 Environment:OMERO_NODE=(unset)
10:43:16 Environment:OMERO_MASTER=(unset)
10:43:16 Environment:OMERO_USERDIR=(unset)
10:43:16 Environment:OMERO_TMPDIR=(unset)
10:43:16 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:43:16 Environment:PYTHONPATH=(unset)
10:43:16 Environment:ICE_HOME=/opt/ice-3.6.5
10:43:16 Environment:LD_LIBRARY_PATH=(unset)
10:43:16 Environment:DYLD_LIBRARY_PATH=(unset)
10:43:16
10:43:16 OMERO SSL port:4064
10:43:16 OMERO TCP port:4063
10:43:16 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:43:16 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:43:16
10:43:16 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:43:16 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:43:16 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:43:16 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:43:16
10:43:16 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 23 July 2024 ecd6551387e6d576559b1a627b7e1fc8d9a09cdf
10:43:16 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 23 July 2024 ecd6551387e6d576559b1a627b7e1fc8d9a09cdf
10:43:16 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 23 July 2024 ecd6551387e6d576559b1a627b7e1fc8d9a09cdf
10:43:16 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 23 July 2024 d8b648933f0940bf95c7ba0e440fae269015ef71
10:43:16 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT
10:43:16 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT
10:43:16 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT
10:43:16 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT
10:43:16 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT
10:43:16 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT
10:43:16 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT
10:43:17 + deactivate
10:43:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:43:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:43:17 + export PATH
10:43:17 + unset _OLD_VIRTUAL_PATH
10:43:17 + '[' -n '' ']'
10:43:17 + '[' -n /bin/bash -o -n '' ']'
10:43:17 + hash -r
10:43:17 + '[' -n '' ']'
10:43:17 + unset VIRTUAL_ENV
10:43:17 + '[' '!' '' = nondestructive ']'
10:43:17 + unset -f deactivate
10:43:17 Finished: SUCCESS
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