13:12:49 Started by upstream project "Trigger" build number 150
13:12:49 originally caused by:
13:12:49 Started by user devspace
13:12:49 Restarted from build #149, stage OMERO Distribution
13:12:49 Running as SYSTEM
13:12:49 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
13:12:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11691042458367802673.sh
13:12:49 + source /home/settings.env
13:12:49 ++ OMERO_DB_HOST=pg
13:12:49 ++ OMERO_DB_USER=postgres
13:12:49 ++ OMERO_DB_PASS=
13:12:49 ++ OMERO_ROOT_PASS=omero
13:12:49 ++ OMERO_DATA_DIR=/OMERO
13:12:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:12:49 + OMERO_DB_NAME=OMERO-server
13:12:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
13:12:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:12:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:12:49 + OMERO_DATA_DIR=/home/omero/omero-server-data
13:12:49 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
13:12:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
13:12:49 ++ deactivate nondestructive
13:12:49 ++ '[' -n '' ']'
13:12:49 ++ '[' -n '' ']'
13:12:49 ++ '[' -n /bin/bash -o -n '' ']'
13:12:49 ++ hash -r
13:12:49 ++ '[' -n '' ']'
13:12:49 ++ unset VIRTUAL_ENV
13:12:49 ++ '[' '!' nondestructive = nondestructive ']'
13:12:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
13:12:49 ++ export VIRTUAL_ENV
13:12:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:12:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:12:49 ++ export PATH
13:12:49 ++ '[' -n '' ']'
13:12:49 ++ '[' -z '' ']'
13:12:49 ++ _OLD_VIRTUAL_PS1=
13:12:49 ++ PS1='(.venv3) '
13:12:49 ++ export PS1
13:12:49 ++ '[' -n /bin/bash -o -n '' ']'
13:12:49 ++ hash -r
13:12:49 + omero admin stop
13:12:50 Waiting on shutdown. Use CTRL-C to exit
13:12:50 .+ sleep 5
13:13:05 + deactivate
13:13:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
13:13:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:13:05 + export PATH
13:13:05 + unset _OLD_VIRTUAL_PATH
13:13:05 + '[' -n '' ']'
13:13:05 + '[' -n /bin/bash -o -n '' ']'
13:13:05 + hash -r
13:13:05 + '[' -n '' ']'
13:13:05 + unset VIRTUAL_ENV
13:13:05 + '[' '!' '' = nondestructive ']'
13:13:05 + unset -f deactivate
13:13:05 + rm -rf /home/omero/workspace/OMERO-server/.venv3
13:13:06 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
13:13:08 + '[' false = true ']'
13:13:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
13:13:08 Skipping PURGE_DATA:CleanDbAndRepo
13:13:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
13:13:11 Copied 1 artifact from "OMERO-build" build number 128
13:13:11 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 126
13:13:12 Copied 2 artifacts from "OMERO-build-build" build number 128
13:13:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16285614312780004289.sh
13:13:12 + source /home/settings.env
13:13:12 ++ OMERO_DB_HOST=pg
13:13:12 ++ OMERO_DB_USER=postgres
13:13:12 ++ OMERO_DB_PASS=
13:13:12 ++ OMERO_ROOT_PASS=omero
13:13:12 ++ OMERO_DATA_DIR=/OMERO
13:13:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:13:12 + OMERO_DB_NAME=OMERO-server
13:13:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
13:13:12 + mkdir -p /home/omero/omero-server-data
13:13:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
13:13:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:13:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:13:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
13:13:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
13:13:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
13:13:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
13:13:12 ++ ls OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:13:12 + ZIP=OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:13:12 + '[' '!' -z '' ']'
13:13:12 + DIST=OMERO.server-5.6.3-485-ec16e0d4cd-ice36
13:13:12 + unzip OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:13:12 Archive: OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/grid/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/profiles/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/error/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/janelia/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/ncsa_paledit/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/luts/wcif/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/analysis_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/annotation_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/export_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/figure_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/import_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/scripts/omero/util_scripts/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/server/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/share/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/share/licenses/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/misc/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__1/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__10/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__11/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__2/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__3/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__4/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__5/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__6/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__7/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__8/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3A__9/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__4/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__5/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__6/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO3__7/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.1__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.2__0/t/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.3__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4.4__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO4__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.0__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.1__1/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.2__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.3__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__1/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__2/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4DEV__3/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/
13:13:12 creating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/var/
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/LICENSE.txt
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/backup.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/mail-senders.example
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/blitz/mail-server.example
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/build.properties
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/env.bat
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/env.sh
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/hibernate.properties
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/ice.config
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-cli.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-indexing-cli.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback-indexing.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/logback.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/mime.types
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/node1.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/node2.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/omero.properties
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/profiles/psql
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/rollover.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/Windows.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/error/maintainance.html
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/README
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/default.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/templates.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/grid/windefault.xml
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/ice.config
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/internal.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/master.cfg
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/templates/robot.template
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/etc/testdropbox.config
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/history.rst
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/OMEZarrReader.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/activation.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aggdesigner-algorithm.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aircompressor.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/annotations.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/antlr.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aopalliance.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/avatica-core.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/avatica-metrics.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-core.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-kms.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/aws-java-sdk-s3.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/base.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-all.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-anim.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-awt-util.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-bridge.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-codec.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-constants.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-css.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-dom.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-ext.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-extension.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-gui-util.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-gvt.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-i18n.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-parser.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-rasterizer-ext.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-rasterizer.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-script.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-slideshow.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-squiggle-ext.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-squiggle.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svg-dom.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svgbrowser.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svggen.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svgpp.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-svgrasterizer.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-swing.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-transcoder.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-ttf2svg.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-util.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/batik-xml.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/btm.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/bufr.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/byte-buddy-agent.jar
13:13:12 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/lib/client/byte-buddy.jar
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13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/psql-header.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/schema.sql
13:13:14 inflating: OMERO.server-5.6.3-485-ec16e0d4cd-ice36/sql/psql/OMERO5.4__0/views.sql
13:13:14 + rm -f OMERO.server-5.6.3-485-ec16e0d4cd-ice36.zip
13:13:14 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-485-ec16e0d4cd-ice36 /home/omero/workspace/OMERO-server/OMERO.server
13:13:14 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
13:13:14 ++ deactivate nondestructive
13:13:14 ++ '[' -n '' ']'
13:13:14 ++ '[' -n '' ']'
13:13:14 ++ '[' -n /bin/bash -o -n '' ']'
13:13:14 ++ hash -r
13:13:14 ++ '[' -n '' ']'
13:13:14 ++ unset VIRTUAL_ENV
13:13:14 ++ '[' '!' nondestructive = nondestructive ']'
13:13:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
13:13:14 ++ export VIRTUAL_ENV
13:13:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:13:14 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:13:14 ++ export PATH
13:13:14 ++ '[' -n '' ']'
13:13:14 ++ '[' -z '' ']'
13:13:14 ++ _OLD_VIRTUAL_PS1=
13:13:14 ++ PS1='(.venv3) '
13:13:14 ++ export PS1
13:13:14 ++ '[' -n /bin/bash -o -n '' ']'
13:13:14 ++ hash -r
13:13:14 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
13:13:15 Collecting zeroc-ice==3.6.5
13:13:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
13:13:17 Installing collected packages: zeroc-ice
13:13:18 Successfully installed zeroc-ice-3.6.5
13:13:18 + pip install -U pip future
13:13:18 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
13:13:18 Collecting pip
13:13:18 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
13:13:18 Collecting future
13:13:18 Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:13:18 Installing collected packages: pip, future
13:13:18 Attempting uninstall: pip
13:13:18 Found existing installation: pip 21.2.3
13:13:19 Uninstalling pip-21.2.3:
13:13:19 Successfully uninstalled pip-21.2.3
13:13:20 Successfully installed future-1.0.0 pip-24.1.2
13:13:20 + pip install markdown
13:13:20 Collecting markdown
13:13:20 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
13:13:20 Collecting importlib-metadata>=4.4 (from markdown)
13:13:20 Using cached importlib_metadata-8.1.0-py3-none-any.whl.metadata (4.7 kB)
13:13:20 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
13:13:20 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
13:13:20 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
13:13:20 Using cached importlib_metadata-8.1.0-py3-none-any.whl (25 kB)
13:13:20 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
13:13:20 Installing collected packages: zipp, importlib-metadata, markdown
13:13:21 Successfully installed importlib-metadata-8.1.0 markdown-3.6 zipp-3.19.2
13:13:21 + pip install reportlab
13:13:21 Collecting reportlab
13:13:21 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
13:13:21 Collecting pillow>=9.0.0 (from reportlab)
13:13:21 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
13:13:21 Collecting chardet (from reportlab)
13:13:21 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
13:13:21 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
13:13:21 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
13:13:22 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
13:13:22 Installing collected packages: pillow, chardet, reportlab
13:13:23 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
13:13:23 + pip install omego
13:13:23 Collecting omego
13:13:23 Using cached omego-0.7.0-py3-none-any.whl
13:13:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
13:13:23 Collecting yaclifw>=0.1.1 (from omego)
13:13:23 Using cached yaclifw-0.2.0-py3-none-any.whl
13:13:23 Collecting six (from yaclifw>=0.1.1->omego)
13:13:23 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
13:13:23 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
13:13:23 Installing collected packages: six, yaclifw, omego
13:13:23 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
13:13:23 + pip install tables
13:13:24 Collecting tables
13:13:24 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
13:13:24 Collecting numpy>=1.19.0 (from tables)
13:13:24 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
13:13:24 Collecting numexpr>=2.6.2 (from tables)
13:13:24 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
13:13:24 Collecting packaging (from tables)
13:13:24 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
13:13:24 Collecting py-cpuinfo (from tables)
13:13:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
13:13:25 Collecting blosc2>=2.3.0 (from tables)
13:13:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
13:13:25 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
13:13:25 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
13:13:25 Collecting msgpack (from blosc2>=2.3.0->tables)
13:13:25 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
13:13:25 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
13:13:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
13:13:25 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
13:13:25 Using cached numpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
13:13:25 Using cached packaging-24.1-py3-none-any.whl (53 kB)
13:13:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
13:13:25 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
13:13:25 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
13:13:25 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
13:13:28 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.1 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
13:13:28 + pip install jinja2
13:13:28 Collecting jinja2
13:13:28 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
13:13:28 Collecting MarkupSafe>=2.0 (from jinja2)
13:13:28 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
13:13:28 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
13:13:28 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
13:13:29 Installing collected packages: MarkupSafe, jinja2
13:13:29 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
13:13:29 + pip install omero-py
13:13:29 Collecting omero-py
13:13:29 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB)
13:13:29 Collecting urllib3<2 (from omero-py)
13:13:29 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
13:13:29 Collecting appdirs (from omero-py)
13:13:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
13:13:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
13:13:30 Collecting numpy<2 (from omero-py)
13:13:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
13:13:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
13:13:30 Collecting PyYAML (from omero-py)
13:13:30 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
13:13:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
13:13:30 Collecting requests (from omero-py)
13:13:30 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
13:13:30 Collecting portalocker (from omero-py)
13:13:30 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
13:13:30 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
13:13:30 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
13:13:30 Collecting idna<4,>=2.5 (from requests->omero-py)
13:13:30 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
13:13:30 Collecting certifi>=2017.4.17 (from requests->omero-py)
13:13:30 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
13:13:30 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB)
13:13:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
13:13:30 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
13:13:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:13:30 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
13:13:30 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
13:13:30 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
13:13:30 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
13:13:30 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
13:13:30 Using cached idna-3.7-py3-none-any.whl (66 kB)
13:13:30 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
13:13:30 Attempting uninstall: numpy
13:13:30 Found existing installation: numpy 2.0.1
13:13:30 Uninstalling numpy-2.0.1:
13:13:30 Successfully uninstalled numpy-2.0.1
13:13:34 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19
13:13:34 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
13:13:35 Collecting omero-metadata
13:13:35 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-n06aitpb/omero-metadata_3184d800f42341378a2668add14f5783
13:13:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-n06aitpb/omero-metadata_3184d800f42341378a2668add14f5783
13:13:36 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e256a273a4e52cf66d3ae0ef4064aed37881a5c0
13:13:36 Installing build dependencies: started
13:13:38 Installing build dependencies: finished with status 'done'
13:13:38 Getting requirements to build wheel: started
13:13:38 Getting requirements to build wheel: finished with status 'done'
13:13:38 Preparing metadata (pyproject.toml): started
13:13:38 Preparing metadata (pyproject.toml): finished with status 'done'
13:13:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4)
13:13:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
13:13:38 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
13:13:38 Collecting pandas (from omero-metadata)
13:13:38 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
13:13:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
13:13:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
13:13:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
13:13:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
13:13:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
13:13:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
13:13:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
13:13:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
13:13:38 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
13:13:38 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
13:13:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
13:13:38 Collecting pytz>=2020.1 (from pandas->omero-metadata)
13:13:38 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
13:13:38 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
13:13:38 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
13:13:38 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
13:13:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
13:13:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
13:13:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4)
13:13:38 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
13:13:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
13:13:38 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
13:13:38 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
13:13:38 Building wheels for collected packages: omero-metadata
13:13:38 Building wheel for omero-metadata (pyproject.toml): started
13:13:39 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
13:13:39 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=361eef5baa830df87eeae60bced88ab215202f899cdca6fb74d6c7bb3bdf0583
13:13:39 Stored in directory: /tmp/pip-ephem-wheel-cache-ijiv6rhx/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
13:13:39 Successfully built omero-metadata
13:13:39 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
13:13:44 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
13:13:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
13:13:44 Collecting omero-cli-render
13:13:44 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-zjg73c17/omero-cli-render_b65a337910bf4804acc81d68ddef2e84
13:13:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-zjg73c17/omero-cli-render_b65a337910bf4804acc81d68ddef2e84
13:13:46 Running command git checkout -b merge_ci --track origin/merge_ci
13:13:47 Switched to a new branch 'merge_ci'
13:13:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
13:13:47 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 4aed2f924c48a951bedf8a755b54baa416335656
13:13:47 Installing build dependencies: started
13:13:49 Installing build dependencies: finished with status 'done'
13:13:49 Getting requirements to build wheel: started
13:13:49 Getting requirements to build wheel: finished with status 'done'
13:13:49 Preparing metadata (pyproject.toml): started
13:13:50 Preparing metadata (pyproject.toml): finished with status 'done'
13:13:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
13:13:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4)
13:13:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
13:13:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
13:13:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
13:13:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
13:13:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
13:13:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
13:13:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
13:13:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
13:13:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
13:13:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
13:13:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4)
13:13:50 Building wheels for collected packages: omero-cli-render
13:13:50 Building wheel for omero-cli-render (pyproject.toml): started
13:13:50 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
13:13:50 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=a1d015d83d3eb10ca346b58683506973f55485c166cac4009ccfc05336634a73
13:13:50 Stored in directory: /tmp/pip-ephem-wheel-cache-kergxt0e/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
13:13:50 Successfully built omero-cli-render
13:13:50 Installing collected packages: omero-cli-render
13:13:50 Successfully installed omero-cli-render-0.8.1.dev0
13:13:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
13:13:50 Collecting omero-cli-duplicate
13:13:50 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-aw2bcatc/omero-cli-duplicate_f00a27518bdd41eeb7c39ce33a82b482
13:13:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-aw2bcatc/omero-cli-duplicate_f00a27518bdd41eeb7c39ce33a82b482
13:13:51 Running command git checkout -b merge_ci --track origin/merge_ci
13:13:52 Switched to a new branch 'merge_ci'
13:13:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
13:13:52 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c8badf0c1893aa0885211aadb6773f22711d34cc
13:13:52 Installing build dependencies: started
13:13:53 Installing build dependencies: finished with status 'done'
13:13:53 Getting requirements to build wheel: started
13:13:54 Getting requirements to build wheel: finished with status 'done'
13:13:54 Preparing metadata (pyproject.toml): started
13:13:54 Preparing metadata (pyproject.toml): finished with status 'done'
13:13:54 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4)
13:13:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
13:13:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
13:13:54 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
13:13:54 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
13:13:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
13:13:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
13:13:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
13:13:54 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
13:13:54 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
13:13:54 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
13:13:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
13:13:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4)
13:13:54 Building wheels for collected packages: omero-cli-duplicate
13:13:54 Building wheel for omero-cli-duplicate (pyproject.toml): started
13:13:54 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
13:13:54 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=8b199dcffa2dd86075e273ad62a8666aaf720fca7dfd6ac633be1e291ec0f806
13:13:54 Stored in directory: /tmp/pip-ephem-wheel-cache-nxq7m16l/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
13:13:54 Successfully built omero-cli-duplicate
13:13:54 Installing collected packages: omero-cli-duplicate
13:13:54 Successfully installed omero-cli-duplicate-0.4.1.dev0
13:13:54 + pip install omero-certificates
13:13:55 Collecting omero-certificates
13:13:55 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
13:13:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4)
13:13:55 Collecting distro==1.8.0 (from omero-certificates)
13:13:55 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
13:13:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
13:13:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
13:13:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
13:13:55 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
13:13:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
13:13:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
13:13:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
13:13:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
13:13:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
13:13:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
13:13:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
13:13:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4)
13:13:55 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
13:13:55 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
13:13:55 Installing collected packages: distro, omero-certificates
13:13:55 Successfully installed distro-1.8.0 omero-certificates-0.3.2
13:13:55 + for x in *.tar.gz
13:13:55 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
13:13:55 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
13:13:55 Installing build dependencies: started
13:13:57 Installing build dependencies: finished with status 'done'
13:13:57 Getting requirements to build wheel: started
13:13:57 Getting requirements to build wheel: finished with status 'done'
13:13:57 Preparing metadata (pyproject.toml): started
13:13:58 Preparing metadata (pyproject.toml): finished with status 'done'
13:13:58 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4)
13:13:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
13:13:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
13:13:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
13:13:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
13:13:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
13:13:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1)
13:13:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
13:13:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
13:13:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
13:13:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
13:13:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7)
13:13:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4)
13:13:58 Building wheels for collected packages: omero-dropbox
13:13:58 Building wheel for omero-dropbox (pyproject.toml): started
13:13:58 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
13:13:58 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=59ea2b9c41f3483c1fe23c5d34256b6c4672796ee1196c507eb36db860da3553
13:13:58 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
13:13:58 Successfully built omero-dropbox
13:13:58 Installing collected packages: omero-dropbox
13:13:58 Successfully installed omero-dropbox-5.7.1.dev0
13:13:58 + for x in *.tar.gz
13:13:58 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
13:13:58 Processing ./omero_marshal-0.9.1.dev0.tar.gz
13:13:58 Installing build dependencies: started
13:14:00 Installing build dependencies: finished with status 'done'
13:14:00 Getting requirements to build wheel: started
13:14:00 Getting requirements to build wheel: finished with status 'done'
13:14:00 Preparing metadata (pyproject.toml): started
13:14:01 Preparing metadata (pyproject.toml): finished with status 'done'
13:14:01 Building wheels for collected packages: omero_marshal
13:14:01 Building wheel for omero_marshal (pyproject.toml): started
13:14:01 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
13:14:01 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=711be54b72f26bb2f8f04f0f370ded36ae04b1ebfab490bb14a8a85e5eca1e51
13:14:01 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
13:14:01 Successfully built omero_marshal
13:14:01 Installing collected packages: omero_marshal
13:14:01 Successfully installed omero_marshal-0.9.1.dev0
13:14:01 + for x in *.tar.gz
13:14:01 + pip install -U omero_py-5.19.5.dev0.tar.gz
13:14:02 Processing ./omero_py-5.19.5.dev0.tar.gz
13:14:02 Installing build dependencies: started
13:14:04 Installing build dependencies: finished with status 'done'
13:14:04 Getting requirements to build wheel: started
13:14:04 Getting requirements to build wheel: finished with status 'done'
13:14:04 Preparing metadata (pyproject.toml): started
13:14:04 Preparing metadata (pyproject.toml): finished with status 'done'
13:14:04 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19)
13:14:04 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4)
13:14:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0)
13:14:04 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4)
13:14:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0)
13:14:04 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.1)
13:14:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5)
13:14:04 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3)
13:14:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1)
13:14:04 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2)
13:14:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.7)
13:14:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4)
13:14:04 Building wheels for collected packages: omero-py
13:14:04 Building wheel for omero-py (pyproject.toml): started
13:14:05 Building wheel for omero-py (pyproject.toml): finished with status 'done'
13:14:05 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782907 sha256=18c4a9ed56db7eaaf484487b15104522065083e231bc30125efbafdd2da438f4
13:14:05 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16
13:14:05 Successfully built omero-py
13:14:05 Installing collected packages: omero-py
13:14:05 Attempting uninstall: omero-py
13:14:05 Found existing installation: omero-py 5.19.4
13:14:05 Uninstalling omero-py-5.19.4:
13:14:06 Successfully uninstalled omero-py-5.19.4
13:14:08 Successfully installed omero-py-5.19.5.dev0
13:14:08 + for x in *.tar.gz
13:14:08 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
13:14:08 Processing ./omero_scripts-5.8.3.dev0.tar.gz
13:14:08 Installing build dependencies: started
13:14:10 Installing build dependencies: finished with status 'done'
13:14:10 Getting requirements to build wheel: started
13:14:10 Getting requirements to build wheel: finished with status 'done'
13:14:10 Preparing metadata (pyproject.toml): started
13:14:10 Preparing metadata (pyproject.toml): finished with status 'done'
13:14:10 Building wheels for collected packages: omero-scripts
13:14:10 Building wheel for omero-scripts (pyproject.toml): started
13:14:11 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
13:14:11 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116556 sha256=89818bea37e0257bbd7aa3c1216364524eafa7f5ea98e3cb029a6f73aa338ea2
13:14:11 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
13:14:11 Successfully built omero-scripts
13:14:11 Installing collected packages: omero-scripts
13:14:11 Successfully installed omero-scripts-5.8.3.dev0
13:14:11 + for x in *.tar.gz
13:14:11 + pip install -U omero_web-5.26.1.dev0.tar.gz
13:14:11 Processing ./omero_web-5.26.1.dev0.tar.gz
13:14:12 Installing build dependencies: started
13:14:13 Installing build dependencies: finished with status 'done'
13:14:13 Getting requirements to build wheel: started
13:14:14 Getting requirements to build wheel: finished with status 'done'
13:14:14 Preparing metadata (pyproject.toml): started
13:14:14 Preparing metadata (pyproject.toml): finished with status 'done'
13:14:14 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.5.dev0)
13:14:14 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
13:14:14 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
13:14:14 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
13:14:14 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB)
13:14:14 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
13:14:14 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
13:14:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
13:14:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
13:14:14 Collecting django-csp (from omero-web==5.26.1.dev0)
13:14:14 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
13:14:14 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
13:14:14 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
13:14:14 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
13:14:14 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
13:14:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
13:14:14 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0)
13:14:14 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1)
13:14:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1)
13:14:14 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
13:14:14 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
13:14:14 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
13:14:14 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
13:14:14 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
13:14:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19)
13:14:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
13:14:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
13:14:14 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4)
13:14:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
13:14:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
13:14:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
13:14:15 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
13:14:15 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
13:14:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
13:14:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
13:14:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4)
13:14:15 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
13:14:15 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
13:14:15 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
13:14:15 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB)
13:14:15 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
13:14:15 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
13:14:15 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
13:14:15 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
13:14:15 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
13:14:15 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
13:14:15 Building wheels for collected packages: omero-web
13:14:15 Building wheel for omero-web (pyproject.toml): started
13:14:16 Building wheel for omero-web (pyproject.toml): finished with status 'done'
13:14:16 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765303 sha256=7884e5817c7d62299d294a09a2839b1483e3bba79bfb34bcdacb13ef728b14ab
13:14:16 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453
13:14:16 Successfully built omero-web
13:14:16 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
13:14:19 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
13:14:19 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
13:14:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
13:14:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
13:14:19 --2024-07-24 13:14:19-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
13:14:19 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ...
13:14:19 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
13:14:19 HTTP request sent, awaiting response... 200 OK
13:14:19 Length: 95703 (93K) [text/plain]
13:14:19 Saving to: ‘Figure_To_Pdf.py’
13:14:19
13:14:19 0K .......... .......... .......... .......... .......... 53% 2.30M 0s
13:14:19 50K .......... .......... .......... .......... ... 100% 20.0M=0.02s
13:14:19
13:14:19 2024-07-24 13:14:19 (3.91 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703]
13:14:19
13:14:19 + chmod 755 Figure_To_Pdf.py
13:14:19 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
13:14:19 + omero config set omero.db.name OMERO-server
13:14:20 + omero config set omero.db.host pg
13:14:22 + omero config set omero.db.user postgres
13:14:23 + omero config set omero.data.dir /home/omero/omero-server-data
13:14:24 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
13:14:26 + omero config set omero.db.poolsize 25
13:14:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
13:14:28 + omero config set omero.security.trustStorePassword changeit
13:14:29 + omero config set omero.mail.config true
13:14:31 + omero config set omero.mail.from qa@openmicroscopy.org.uk
13:14:32 + omero config set omero.mail.host smtp.dundee.ac.uk
13:14:33 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
13:14:35 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
13:14:36 + omero certificates
13:14:37 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
13:14:37 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
13:14:38 + '[' false = true ']'
13:14:38 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
13:14:38 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
13:14:38 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbcommand => upgrade
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbhost => localhost
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbname => OMERO-server
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbpass => omero
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG dbuser => omero
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG rootpass => omero
13:14:38 2024-07-24 13:14:38,342 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
13:14:38 2024-07-24 13:14:38,343 [omego.extern] INFO Executing : omero version
13:14:39 OMERO.py version:
13:14:39 OMERO.server version:
13:14:39 5.6.3-485-ec16e0d4cd-ice36
13:14:39 5.19.5.dev0
13:14:39 2024-07-24 13:14:39,748 [omego.extern] INFO Completed [1.406 s]
13:14:39 2024-07-24 13:14:39,749 [omego.extern] DEBUG Using omero CLI from omero
13:14:39 2024-07-24 13:14:39,749 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
13:14:39 2024-07-24 13:14:39,749 [omego.extern] INFO Running [current environment]: omero config get --show-password
13:14:39 2024-07-24 13:14:39,749 [omego.extern] INFO Executing : omero config get --show-password
13:14:41 2024-07-24 13:14:41,070 [omego.extern] INFO Completed [1.321 s]
13:14:41 2024-07-24 13:14:41,071 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
13:14:41 2024-07-24 13:14:41,071 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Completed [0.006 s]
13:14:41 2024-07-24 13:14:41,077 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
13:14:41 2024-07-24 13:14:41,077 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
13:14:41
13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Running [current environment]: omero config get --show-password
13:14:41 2024-07-24 13:14:41,077 [omego.extern] INFO Executing : omero config get --show-password
13:14:42 2024-07-24 13:14:42,670 [omego.extern] INFO Completed [1.593 s]
13:14:42 2024-07-24 13:14:42,670 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
13:14:42 2024-07-24 13:14:42,670 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
13:14:42 2024-07-24 13:14:42,682 [omego.extern] INFO Completed [0.012 s]
13:14:42 2024-07-24 13:14:42,683 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.4") at port "5432".\n'
13:14:42 2024-07-24 13:14:42,683 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
13:14:42 2024-07-24 13:14:42,683 [omego.extern] INFO Running [current environment]: omero config get --show-password
13:14:42 2024-07-24 13:14:42,683 [omego.extern] INFO Executing : omero config get --show-password
13:14:44 2024-07-24 13:14:44,014 [omego.extern] INFO Completed [1.331 s]
13:14:44 2024-07-24 13:14:44,014 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
13:14:44 2024-07-24 13:14:44,014 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
13:14:44 2024-07-24 13:14:44,025 [omego.extern] INFO Completed [0.010 s]
13:14:44 2024-07-24 13:14:44,025 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
13:14:44 2024-07-24 13:14:44,025 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
13:14:44 2024-07-24 13:14:44,027 [ omego.db] INFO Database is already at OMERO5.4__0
13:14:44 + export LANG=en_US.UTF-8
13:14:44 + LANG=en_US.UTF-8
13:14:44 + export LANGUAGE=en_US:en
13:14:44 + LANGUAGE=en_US:en
13:14:44 + export LC_ALL=en_US.UTF-8
13:14:44 + LC_ALL=en_US.UTF-8
13:14:44 + BUILD_ID=DONT_KILL_ME
13:14:44 + omero admin start
13:14:52 No descriptor given. Using etc/grid/default.xml
13:14:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
13:14:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
13:14:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
13:14:59 Waiting on startup. Use CTRL-C to exit
13:15:00 + omero admin waitup
13:15:01 Waiting on startup. Use CTRL-C to exit
13:15:01 + omero admin diagnostics
13:15:02
13:15:02 ================================================================================
13:15:02 OMERO Diagnostics (admin)
13:15:02 ================================================================================
13:15:02
13:15:02 Commands: java -version 11.0.22 (/usr/bin/java)
13:15:02 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
13:15:02 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
13:15:02 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
13:15:02 Commands: psql --version 16.2 (/usr/bin/psql)
13:15:02 Commands: openssl version 3.0.71 (/usr/bin/openssl)
13:15:02
13:15:02 Component: OMERO.py 5.19.5.dev0
13:15:02 Component: OMERO.server 5.6.3-485-ec16e0d4cd-ice36
13:15:02
13:15:02 Server: icegridnode running
13:15:02 Server: Blitz-0 active (pid = 43650, enabled)
13:15:02 Server: Indexer-0 activating (enabled)
13:15:02 Server: OMERO.Glacier2 active (pid = 43682, enabled)
13:15:02 Server: OMERO.IceStorm active (pid = 43710, enabled)
13:15:02 Server: Processor-0 activating (enabled)
13:15:02 Server: Tables-0 activating (enabled)
13:15:02
13:15:02 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
13:15:02 Log files: Blitz-0.log 20.8 KB errors=0 warnings=1
13:15:02 Log files: DropBox.log n/a
13:15:02 Log files: FileServer.log n/a
13:15:02 Log files: Indexer-0.log 114 B
13:15:02 Log files: MonitorServer.log n/a
13:15:02 Log files: Processor-0.log 281 B
13:15:02 Log files: Tables-0.log 281 B
13:15:02 Log files: TestDropBox.log n/a
13:15:02 Log files: master.err 180 B
13:15:02 Log files: master.out 30.1 KB
13:15:02 Log files: Total size 0.05 MB
13:15:02
13:15:02
13:15:02 Environment:OMERO_HOME=(unset)
13:15:02 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:15:02 Environment:OMERO_NODE=(unset)
13:15:02 Environment:OMERO_MASTER=(unset)
13:15:02 Environment:OMERO_USERDIR=(unset)
13:15:02 Environment:OMERO_TMPDIR=(unset)
13:15:02 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:15:02 Environment:PYTHONPATH=(unset)
13:15:02 Environment:ICE_HOME=/opt/ice-3.6.5
13:15:02 Environment:LD_LIBRARY_PATH=(unset)
13:15:02 Environment:DYLD_LIBRARY_PATH=(unset)
13:15:03
13:15:03 OMERO SSL port:4064
13:15:03 OMERO TCP port:4063
13:15:03 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
13:15:03 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
13:15:03
13:15:03 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
13:15:03 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
13:15:03 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
13:15:03 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
13:15:03
13:15:03 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67
13:15:03 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67
13:15:03 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 24 July 2024 19e65fe70220ce11b50d7a0d4e275fc6f7f91d67
13:15:03 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 July 2024 5f11091280226ed0a235570e10bd8227221ec197
13:15:03 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT
13:15:03 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT
13:15:03 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT
13:15:03 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT
13:15:03 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT
13:15:03 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT
13:15:03 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT
13:15:03 + deactivate
13:15:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
13:15:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:15:03 + export PATH
13:15:03 + unset _OLD_VIRTUAL_PATH
13:15:03 + '[' -n '' ']'
13:15:03 + '[' -n /bin/bash -o -n '' ']'
13:15:03 + hash -r
13:15:03 + '[' -n '' ']'
13:15:03 + unset VIRTUAL_ENV
13:15:03 + '[' '!' '' = nondestructive ']'
13:15:03 + unset -f deactivate
13:15:03 Finished: SUCCESS
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