10:30:04 Started by upstream project "Trigger" build number 189
10:30:04 originally caused by:
10:30:04 Started by user devspace
10:30:04 Running as SYSTEM
10:30:05 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:30:05 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16580777719874634600.sh
10:30:05 + source /home/settings.env
10:30:05 ++ OMERO_DB_HOST=pg
10:30:05 ++ OMERO_DB_USER=postgres
10:30:05 ++ OMERO_DB_PASS=
10:30:05 ++ OMERO_ROOT_PASS=omero
10:30:05 ++ OMERO_DATA_DIR=/OMERO
10:30:05 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:30:05 + OMERO_DB_NAME=OMERO-server
10:30:05 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:30:05 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:30:05 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:30:05 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:30:05 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:30:05 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:30:05 ++ deactivate nondestructive
10:30:05 ++ '[' -n '' ']'
10:30:05 ++ '[' -n '' ']'
10:30:05 ++ hash -r
10:30:05 ++ '[' -n '' ']'
10:30:05 ++ unset VIRTUAL_ENV
10:30:05 ++ unset VIRTUAL_ENV_PROMPT
10:30:05 ++ '[' '!' nondestructive = nondestructive ']'
10:30:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:30:05 ++ export VIRTUAL_ENV
10:30:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:30:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:30:05 ++ export PATH
10:30:05 ++ '[' -n '' ']'
10:30:05 ++ '[' -z '' ']'
10:30:05 ++ _OLD_VIRTUAL_PS1=
10:30:05 ++ PS1='(.venv3) '
10:30:05 ++ export PS1
10:30:05 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:30:05 ++ export VIRTUAL_ENV_PROMPT
10:30:05 ++ hash -r
10:30:05 + omero admin stop
10:30:36 Server not running
10:30:36 + echo not running
10:30:36 not running
10:30:36 + sleep 5
10:30:41 + deactivate
10:30:41 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:30:41 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:30:41 + export PATH
10:30:41 + unset _OLD_VIRTUAL_PATH
10:30:41 + '[' -n '' ']'
10:30:41 + hash -r
10:30:41 + '[' -n '' ']'
10:30:41 + unset VIRTUAL_ENV
10:30:41 + unset VIRTUAL_ENV_PROMPT
10:30:41 + '[' '!' '' = nondestructive ']'
10:30:41 + unset -f deactivate
10:30:41 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:30:42 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
10:30:46 + '[' false = true ']'
10:30:46 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:30:46 Skipping PURGE_DATA:CleanDbAndRepo
10:30:46 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:30:48 Copied 1 artifact from "OMERO-build" build number 142
10:30:48 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 133
10:30:48 Copied 2 artifacts from "OMERO-build-build" build number 151
10:30:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3594658562702421877.sh
10:30:48 + source /home/settings.env
10:30:48 ++ OMERO_DB_HOST=pg
10:30:48 ++ OMERO_DB_USER=postgres
10:30:48 ++ OMERO_DB_PASS=
10:30:48 ++ OMERO_ROOT_PASS=omero
10:30:48 ++ OMERO_DATA_DIR=/OMERO
10:30:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:30:48 + OMERO_DB_NAME=OMERO-server
10:30:48 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:30:48 + mkdir -p /home/omero/omero-server-data
10:30:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:30:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:30:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:30:48 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:30:48 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:30:48 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:30:48 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:30:48 ++ ls OMERO.server-5.6.3-594-f2a9784d29-ice36-b142.zip
10:30:48 + ZIP=OMERO.server-5.6.3-594-f2a9784d29-ice36-b142.zip
10:30:48 + '[' '!' -z '' ']'
10:30:48 + DIST=OMERO.server-5.6.3-594-f2a9784d29-ice36-b142
10:30:48 + unzip OMERO.server-5.6.3-594-f2a9784d29-ice36-b142.zip
10:30:48 Archive: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142.zip
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/blitz/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/grid/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/profiles/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/error/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/grid/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/
10:30:48 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/janelia/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/matplotlib/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/ncsa_paledit/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/seaborn/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/luts/wcif/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/analysis_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/annotation_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/export_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/figure_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/import_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/scripts/omero/util_scripts/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/server/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/share/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/share/licenses/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/misc/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__1/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__10/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__11/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__2/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__3/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__4/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__5/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__6/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__7/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__8/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3A__9/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3__4/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3__5/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3__6/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO3__7/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4.1__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4.2__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4.2__0/t/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4.3__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4.4__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO4__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.0__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.1__1/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.2__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__1/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__2/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__3/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/var/
10:30:49 creating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/var/tmp/
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/LICENSE.txt
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/backup.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/blitz/mail-senders.example
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/blitz/mail-server.example
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/build.properties
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/env.bat
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/env.sh
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/hibernate.properties
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/ice.config
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/logback-cli.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/logback-indexing-cli.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/logback-indexing.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/logback.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/mime.types
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/node1.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/node2.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/omero.properties
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/profiles/psql
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/rollover.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/Windows.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/error/maintainance.html
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/grid/README
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/grid/default.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/grid/templates.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/grid/windefault.xml
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/ice.config
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/internal.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/master.cfg
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/templates/robot.template
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/etc/testdropbox.config
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/history.rst
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/OMEZarrReader.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/accessors-smart.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/activation.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aggdesigner-algorithm.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aircompressor.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/antlr.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aopalliance.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/apiguardian-api.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/asm.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/avatica-core.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/avatica-metrics.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aws-java-sdk-core.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aws-java-sdk-kms.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/aws-java-sdk-s3.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/base.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-anim.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-awt-util.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-bridge.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-codec.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-constants.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-css.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-dom.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-ext.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-gvt.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-i18n.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-parser.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-script.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-shared-resources.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-svg-dom.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-svggen.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-transcoder.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-util.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/batik-xml.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/btm.jar
10:30:49 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/lib/client/calcite-core.jar
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10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/psql-footer.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/psql-header.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/schema.sql
10:30:51 inflating: OMERO.server-5.6.3-594-f2a9784d29-ice36-b142/sql/psql/OMERO5.4__0/views.sql
10:30:51 + rm -f OMERO.server-5.6.3-594-f2a9784d29-ice36-b142.zip
10:30:51 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-f2a9784d29-ice36-b142 /home/omero/workspace/OMERO-server/OMERO.server
10:30:51 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:30:51 ++ deactivate nondestructive
10:30:51 ++ '[' -n '' ']'
10:30:51 ++ '[' -n '' ']'
10:30:51 ++ hash -r
10:30:51 ++ '[' -n '' ']'
10:30:51 ++ unset VIRTUAL_ENV
10:30:51 ++ unset VIRTUAL_ENV_PROMPT
10:30:51 ++ '[' '!' nondestructive = nondestructive ']'
10:30:51 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:30:51 ++ export VIRTUAL_ENV
10:30:51 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:30:51 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:30:51 ++ export PATH
10:30:51 ++ '[' -n '' ']'
10:30:51 ++ '[' -z '' ']'
10:30:51 ++ _OLD_VIRTUAL_PS1=
10:30:51 ++ PS1='(.venv3) '
10:30:51 ++ export PS1
10:30:51 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:30:51 ++ export VIRTUAL_ENV_PROMPT
10:30:51 ++ hash -r
10:30:51 + pip install -U pip
10:30:51 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
10:30:51 Collecting pip
10:30:51 Using cached pip-26.1-py3-none-any.whl (1.8 MB)
10:30:51 Installing collected packages: pip
10:30:51 Attempting uninstall: pip
10:30:51 Found existing installation: pip 22.3.1
10:30:52 Uninstalling pip-22.3.1:
10:30:52 Successfully uninstalled pip-22.3.1
10:30:52 Successfully installed pip-26.1
10:30:52 WARNING: There was an error checking the latest version of pip.
10:30:53 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
10:30:53 Collecting zeroc-ice==3.6.5
10:30:53 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:30:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.4 MB/s 0:00:02
10:30:56 Installing collected packages: zeroc-ice
10:30:57 Successfully installed zeroc-ice-3.6.5
10:30:57 + pip install markdown
10:30:58 Collecting markdown
10:30:58 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
10:30:58 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
10:30:58 Installing collected packages: markdown
10:30:58 Successfully installed markdown-3.10.2
10:30:58 + pip install reportlab
10:30:59 Collecting reportlab
10:30:59 Downloading reportlab-4.5.0-py3-none-any.whl.metadata (1.7 kB)
10:30:59 Collecting pillow>=9.0.0 (from reportlab)
10:30:59 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
10:30:59 Collecting charset-normalizer (from reportlab)
10:30:59 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
10:30:59 Downloading reportlab-4.5.0-py3-none-any.whl (2.0 MB)
10:30:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 14.1 MB/s 0:00:00
10:30:59 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
10:30:59 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
10:31:00 Installing collected packages: pillow, charset-normalizer, reportlab
10:31:01
10:31:01 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.5.0
10:31:01 + pip install omego
10:31:01 Collecting omego
10:31:01 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
10:31:01 Collecting future (from omego)
10:31:01 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:31:01 Collecting yaclifw>=0.1.1 (from omego)
10:31:01 Using cached yaclifw-0.2.0-py3-none-any.whl
10:31:01 Collecting six (from yaclifw>=0.1.1->omego)
10:31:01 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:31:01 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
10:31:01 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:31:01 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:31:01 Installing collected packages: six, future, yaclifw, omego
10:31:02
10:31:02 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
10:31:02 + pip install tables
10:31:02 Collecting tables
10:31:02 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
10:31:03 Collecting numpy>=1.20.0 (from tables)
10:31:03 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
10:31:03 Collecting numexpr>=2.6.2 (from tables)
10:31:03 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:31:03 Collecting packaging (from tables)
10:31:03 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
10:31:03 Collecting py-cpuinfo (from tables)
10:31:03 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:31:03 Collecting blosc2>=2.3.0 (from tables)
10:31:03 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
10:31:03 Collecting ndindex (from blosc2>=2.3.0->tables)
10:31:03 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
10:31:03 Collecting msgpack (from blosc2>=2.3.0->tables)
10:31:03 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
10:31:03 Collecting requests (from blosc2>=2.3.0->tables)
10:31:03 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB)
10:31:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
10:31:03 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
10:31:03 Using cached idna-3.13-py3-none-any.whl.metadata (8.0 kB)
10:31:04 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
10:31:04 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
10:31:04 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
10:31:04 Using cached certifi-2026.4.22-py3-none-any.whl.metadata (2.5 kB)
10:31:04 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
10:31:04 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
10:31:04 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
10:31:04 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:31:04 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
10:31:04 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
10:31:04 Using cached packaging-26.2-py3-none-any.whl (100 kB)
10:31:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
10:31:04 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
10:31:04 Using cached idna-3.13-py3-none-any.whl (68 kB)
10:31:04 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
10:31:04 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB)
10:31:04 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
10:31:08
10:31:08 Successfully installed blosc2-4.1.2 certifi-2026.4.22 idna-3.13 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.2 py-cpuinfo-9.0.0 requests-2.33.1 tables-3.11.1 urllib3-2.6.3
10:31:08 + pip install jinja2
10:31:08 Collecting jinja2
10:31:08 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
10:31:08 Collecting MarkupSafe>=2.0 (from jinja2)
10:31:08 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
10:31:08 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
10:31:08 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
10:31:08 Installing collected packages: MarkupSafe, jinja2
10:31:09
10:31:09 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
10:31:09 + pip install omero-py
10:31:09 Collecting omero-py
10:31:09 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
10:31:09 Collecting appdirs (from omero-py)
10:31:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:31:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
10:31:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4)
10:31:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0)
10:31:09 Collecting PyYAML (from omero-py)
10:31:09 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
10:31:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:31:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.33.1)
10:31:09 Collecting portalocker (from omero-py)
10:31:09 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:31:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
10:31:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.13)
10:31:09 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
10:31:09 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.4.22)
10:31:09 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
10:31:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:31:09 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:31:09 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:31:09 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
10:31:11
10:31:11 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
10:31:11 + pip install pyarrow
10:31:12 Collecting pyarrow
10:31:12 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
10:31:12 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (48.8 MB)
10:31:12 Installing collected packages: pyarrow
10:31:14 Successfully installed pyarrow-24.0.0
10:31:14 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:31:14 Collecting omero-metadata
10:31:14 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-v1r9fwmy/omero-metadata_3565b27c24094194b4ccc03d507f58f9
10:31:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-v1r9fwmy/omero-metadata_3565b27c24094194b4ccc03d507f58f9
10:31:15 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2f78138f20fe9e4ad0444297547968b4c716733e
10:31:15 Installing build dependencies: started
10:31:16 Installing build dependencies: finished with status 'done'
10:31:16 Getting requirements to build wheel: started
10:31:16 Getting requirements to build wheel: finished with status 'done'
10:31:16 Preparing metadata (pyproject.toml): started
10:31:16 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
10:31:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
10:31:16 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
10:31:17 Collecting pandas (from omero-metadata)
10:31:17 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
10:31:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:31:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:31:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4)
10:31:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0)
10:31:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:31:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.33.1)
10:31:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
10:31:17 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
10:31:17 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
10:31:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:31:17 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
10:31:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
10:31:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.13)
10:31:17 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
10:31:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.4.22)
10:31:17 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
10:31:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:31:17 Building wheels for collected packages: omero-metadata
10:31:17 Building wheel for omero-metadata (pyproject.toml): started
10:31:17 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:31:17 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=4043b1c7bc24932505027c81348d466e9e1a9eb4bf4e4073bbbffc4846f21cc3
10:31:17 Stored in directory: /tmp/pip-ephem-wheel-cache-i5vnhalc/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
10:31:17 Successfully built omero-metadata
10:31:17 Installing collected packages: python-dateutil, pandas, omero-metadata
10:31:22
10:31:22 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.2 python-dateutil-2.9.0.post0
10:31:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:31:22 Collecting omero-cli-render
10:31:22 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-n5ftq80r/omero-cli-render_321277b2e9f64428b796a1deab9fd977
10:31:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-n5ftq80r/omero-cli-render_321277b2e9f64428b796a1deab9fd977
10:31:23 Running command git checkout -b merge_ci --track origin/merge_ci
10:31:24 Switched to a new branch 'merge_ci'
10:31:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:31:24 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 6ae0b920a8538fbf3dfbe6444f746bad836c334a
10:31:24 Installing build dependencies: started
10:31:25 Installing build dependencies: finished with status 'done'
10:31:25 Getting requirements to build wheel: started
10:31:26 Getting requirements to build wheel: finished with status 'done'
10:31:26 Preparing metadata (pyproject.toml): started
10:31:26 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
10:31:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
10:31:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:31:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:31:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4)
10:31:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0)
10:31:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:31:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.33.1)
10:31:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
10:31:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
10:31:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.13)
10:31:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
10:31:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.4.22)
10:31:26 Building wheels for collected packages: omero-cli-render
10:31:26 Building wheel for omero-cli-render (pyproject.toml): started
10:31:26 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:31:26 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=a4952aad8011a876bf815d7ce00d58551da7cf02783a4fe43b802ce86a8b8a0f
10:31:26 Stored in directory: /tmp/pip-ephem-wheel-cache-k_u4xnnw/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
10:31:26 Successfully built omero-cli-render
10:31:26 Installing collected packages: omero-cli-render
10:31:26 Successfully installed omero-cli-render-0.8.2.dev0
10:31:26 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:31:26 Collecting omero-cli-duplicate
10:31:26 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-jg8vhb10/omero-cli-duplicate_971863920d974d0c9bb90414c2d3282a
10:31:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-jg8vhb10/omero-cli-duplicate_971863920d974d0c9bb90414c2d3282a
10:31:27 Running command git checkout -b merge_ci --track origin/merge_ci
10:31:28 Switched to a new branch 'merge_ci'
10:31:28 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:31:28 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6b788590acd4bd83ae3b0739d314db1ac146f243
10:31:28 Installing build dependencies: started
10:31:28 Installing build dependencies: finished with status 'done'
10:31:28 Getting requirements to build wheel: started
10:31:29 Getting requirements to build wheel: finished with status 'done'
10:31:29 Preparing metadata (pyproject.toml): started
10:31:29 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:29 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
10:31:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:31:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:31:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4)
10:31:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0)
10:31:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
10:31:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:31:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.33.1)
10:31:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
10:31:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7)
10:31:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.13)
10:31:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
10:31:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.4.22)
10:31:29 Building wheels for collected packages: omero-cli-duplicate
10:31:29 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:31:29 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:31:29 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=ce09b514d8daf3fb30a2b63e515d0cdc7524cf05d91366661e25e4c9b83a34e5
10:31:29 Stored in directory: /tmp/pip-ephem-wheel-cache-0babkfey/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
10:31:29 Successfully built omero-cli-duplicate
10:31:29 Installing collected packages: omero-cli-duplicate
10:31:29 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:31:29 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
10:31:30 Collecting omero-cli-zarr
10:31:30 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-cz4u5tyw/omero-cli-zarr_69871d2cbac04622bcd1ef487555b3a1
10:31:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-cz4u5tyw/omero-cli-zarr_69871d2cbac04622bcd1ef487555b3a1
10:31:31 Running command git checkout -b merge_ci --track origin/merge_ci
10:31:31 Switched to a new branch 'merge_ci'
10:31:31 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:31:31 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 4596abcc1b09c7ef9bed36f2363a7779f0214a4e
10:31:31 Installing build dependencies: started
10:31:32 Installing build dependencies: finished with status 'done'
10:31:32 Getting requirements to build wheel: started
10:31:32 Getting requirements to build wheel: finished with status 'done'
10:31:32 Installing backend dependencies: started
10:31:33 Installing backend dependencies: finished with status 'done'
10:31:33 Preparing metadata (pyproject.toml): started
10:31:33 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
10:31:33 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
10:31:33 Using cached ome_zarr-0.16.0-py3-none-any.whl.metadata (2.9 kB)
10:31:33 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.4)
10:31:33 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:33 Using cached dask-2026.3.0-py3-none-any.whl.metadata (3.9 kB)
10:31:34 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:34 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
10:31:34 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:34 Downloading fsspec-2026.4.0-py3-none-any.whl.metadata (10 kB)
10:31:35 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:35 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
10:31:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.33.1)
10:31:35 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:35 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
10:31:35 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:35 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
10:31:35 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:35 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
10:31:35 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
10:31:36 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached click-8.3.3-py3-none-any.whl.metadata (2.6 kB)
10:31:36 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
10:31:36 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2)
10:31:36 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
10:31:36 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
10:31:36 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
10:31:36 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Downloading s3fs-2026.4.0-py3-none-any.whl.metadata (1.2 kB)
10:31:36 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached zipp-3.23.1-py3-none-any.whl.metadata (3.6 kB)
10:31:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
10:31:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
10:31:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.2.0)
10:31:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
10:31:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
10:31:36 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
10:31:36 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached aiobotocore-3.5.0-py3-none-any.whl.metadata (27 kB)
10:31:36 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
10:31:36 Collecting botocore<1.42.92,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:36 Using cached botocore-1.42.91-py3-none-any.whl.metadata (5.9 kB)
10:31:36 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
10:31:37 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:37 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
10:31:37 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:37 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
10:31:38 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
10:31:38 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
10:31:38 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
10:31:38 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
10:31:38 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
10:31:38 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
10:31:38 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:38 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
10:31:38 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.92,>=1.42.90->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
10:31:38 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
10:31:39 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.13)
10:31:39 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
10:31:39 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
10:31:39 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
10:31:39 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
10:31:39 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
10:31:39 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
10:31:39 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
10:31:39 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:39 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
10:31:40 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:31:40 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
10:31:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.7)
10:31:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.4.22)
10:31:40 Using cached ome_zarr-0.16.0-py3-none-any.whl (46 kB)
10:31:40 Using cached dask-2026.3.0-py3-none-any.whl (1.5 MB)
10:31:40 Using cached click-8.3.3-py3-none-any.whl (110 kB)
10:31:40 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
10:31:40 Downloading fsspec-2026.4.0-py3-none-any.whl (203 kB)
10:31:40 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
10:31:40 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
10:31:40 Downloading s3fs-2026.4.0-py3-none-any.whl (32 kB)
10:31:40 Using cached aiobotocore-3.5.0-py3-none-any.whl (88 kB)
10:31:40 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
10:31:40 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
10:31:40 Using cached botocore-1.42.91-py3-none-any.whl (14.9 MB)
10:31:40 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
10:31:40 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
10:31:40 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
10:31:40 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
10:31:40 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
10:31:40 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
10:31:40 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
10:31:40 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
10:31:40 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
10:31:40 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
10:31:41 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
10:31:41 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
10:31:41 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
10:31:41 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
10:31:41 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
10:31:41 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
10:31:41 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
10:31:41 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
10:31:41 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
10:31:41 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
10:31:41 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
10:31:41 Using cached zipp-3.23.1-py3-none-any.whl (10 kB)
10:31:41 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
10:31:41 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
10:31:41 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
10:31:42 Building wheels for collected packages: omero-cli-zarr
10:31:42 Building wheel for omero-cli-zarr (pyproject.toml): started
10:31:42 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
10:31:42 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g4596abc-py3-none-any.whl size=38289 sha256=001676d6b788230b869688777228dabae334472dcb80d06379f3ad1cc9de874d
10:31:42 Stored in directory: /tmp/pip-ephem-wheel-cache-c2urunzi/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
10:31:42 Successfully built omero-cli-zarr
10:31:42 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
10:31:52
10:31:52 Successfully installed Deprecated-1.3.1 aiobotocore-3.5.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.42.91 click-8.3.3 cloudpickle-3.1.2 dask-2026.3.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.4.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.16.0 omero-cli-zarr-0.5.5.dev162+g4596abc partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.4.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.6 zipp-3.23.1
10:31:52 + pip install omero-certificates
10:31:54 Collecting omero-certificates
10:31:54 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
10:31:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
10:31:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:31:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:31:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.4)
10:31:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.2.0)
10:31:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
10:31:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:31:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.33.1)
10:31:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
10:31:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7)
10:31:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.13)
10:31:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
10:31:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.4.22)
10:31:54 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
10:31:54 Installing collected packages: omero-certificates
10:31:54 Successfully installed omero-certificates-0.4.0
10:31:54 + for x in *.tar.gz
10:31:54 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:31:54 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:31:54 Installing build dependencies: started
10:31:55 Installing build dependencies: finished with status 'done'
10:31:55 Getting requirements to build wheel: started
10:31:55 Getting requirements to build wheel: finished with status 'done'
10:31:55 Preparing metadata (pyproject.toml): started
10:31:55 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:55 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
10:31:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:31:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:31:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.4)
10:31:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.2.0)
10:31:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
10:31:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:31:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.33.1)
10:31:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
10:31:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7)
10:31:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.13)
10:31:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
10:31:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.4.22)
10:31:55 Building wheels for collected packages: omero-dropbox
10:31:55 Building wheel for omero-dropbox (pyproject.toml): started
10:31:56 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:31:56 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=387673914f8831f0dc31cde7bca09ee7a75e58ae39dbec60165c4c54d1409ce5
10:31:56 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
10:31:56 Successfully built omero-dropbox
10:31:56 Installing collected packages: omero-dropbox
10:31:56 Successfully installed omero-dropbox-5.7.1.dev0
10:31:56 + for x in *.tar.gz
10:31:56 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
10:31:56 Processing ./omero_marshal-0.9.2.dev0.tar.gz
10:31:56 Installing build dependencies: started
10:31:57 Installing build dependencies: finished with status 'done'
10:31:57 Getting requirements to build wheel: started
10:31:57 Getting requirements to build wheel: finished with status 'done'
10:31:57 Preparing metadata (pyproject.toml): started
10:31:57 Preparing metadata (pyproject.toml): finished with status 'done'
10:31:57 Building wheels for collected packages: omero_marshal
10:31:57 Building wheel for omero_marshal (pyproject.toml): started
10:31:58 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:31:58 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=3403aff44713c4e401fbb826356f29d6b944c7b055fce2078c06213118040619
10:31:58 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
10:31:58 Successfully built omero_marshal
10:31:58 Installing collected packages: omero_marshal
10:31:58 Successfully installed omero_marshal-0.9.2.dev0
10:31:58 + for x in *.tar.gz
10:31:58 + pip install -U omero_py-5.22.2.dev0.tar.gz
10:31:58 Processing ./omero_py-5.22.2.dev0.tar.gz
10:31:59 Installing build dependencies: started
10:31:59 Installing build dependencies: finished with status 'done'
10:31:59 Getting requirements to build wheel: started
10:32:00 Getting requirements to build wheel: finished with status 'done'
10:32:00 Preparing metadata (pyproject.toml): started
10:32:00 Preparing metadata (pyproject.toml): finished with status 'done'
10:32:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
10:32:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
10:32:00 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.4)
10:32:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.2.0)
10:32:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
10:32:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
10:32:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.33.1)
10:32:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
10:32:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7)
10:32:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.13)
10:32:00 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.6.3)
10:32:00 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.4.22)
10:32:00 Building wheels for collected packages: omero-py
10:32:00 Building wheel for omero-py (pyproject.toml): started
10:32:01 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:32:01 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2786692 sha256=a818a287d34b60032ef80cc4e593be181082a80525b2e314c7b23d86eceb2cec
10:32:01 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
10:32:01 Successfully built omero-py
10:32:01 Installing collected packages: omero-py
10:32:01 Attempting uninstall: omero-py
10:32:01 Found existing installation: omero-py 5.22.1
10:32:01 Uninstalling omero-py-5.22.1:
10:32:02 Successfully uninstalled omero-py-5.22.1
10:32:03 Successfully installed omero-py-5.22.2.dev0
10:32:03 + for x in *.tar.gz
10:32:03 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
10:32:04 Processing ./omero_scripts-5.10.1.dev0.tar.gz
10:32:04 Installing build dependencies: started
10:32:04 Installing build dependencies: finished with status 'done'
10:32:04 Getting requirements to build wheel: started
10:32:05 Getting requirements to build wheel: finished with status 'done'
10:32:05 Preparing metadata (pyproject.toml): started
10:32:05 Preparing metadata (pyproject.toml): finished with status 'done'
10:32:05 Building wheels for collected packages: omero-scripts
10:32:05 Building wheel for omero-scripts (pyproject.toml): started
10:32:05 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:32:05 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=fce0a1ea29346ed88d940ce4f5f7c8cd034a3eb2ea6aba507b71073bce5fe41e
10:32:05 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
10:32:05 Successfully built omero-scripts
10:32:05 Installing collected packages: omero-scripts
10:32:06 Successfully installed omero-scripts-5.10.1.dev0
10:32:06 + for x in *.tar.gz
10:32:06 + pip install -U omero_web-5.31.1.dev0.tar.gz
10:32:06 Processing ./omero_web-5.31.1.dev0.tar.gz
10:32:06 Installing build dependencies: started
10:32:07 Installing build dependencies: finished with status 'done'
10:32:07 Getting requirements to build wheel: started
10:32:07 Getting requirements to build wheel: finished with status 'done'
10:32:07 Preparing metadata (pyproject.toml): started
10:32:08 Preparing metadata (pyproject.toml): finished with status 'done'
10:32:08 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.2.dev0)
10:32:08 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
10:32:08 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
10:32:08 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
10:32:08 Using cached django-5.2.13-py3-none-any.whl.metadata (4.1 kB)
10:32:08 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
10:32:08 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
10:32:08 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
10:32:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:32:08 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
10:32:08 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
10:32:08 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
10:32:08 Using cached gunicorn-25.3.0-py3-none-any.whl.metadata (5.5 kB)
10:32:08 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
10:32:08 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.2.0)
10:32:08 Collecting pytz (from omero-web==5.31.1.dev0)
10:32:08 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
10:32:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
10:32:08 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.2)
10:32:08 Collecting importlib-resources (from omero-web==5.31.1.dev0)
10:32:08 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
10:32:08 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
10:32:08 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
10:32:08 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
10:32:08 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
10:32:08 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
10:32:08 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
10:32:08 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
10:32:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
10:32:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
10:32:08 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.4)
10:32:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
10:32:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
10:32:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.33.1)
10:32:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.7)
10:32:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.13)
10:32:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
10:32:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.4.22)
10:32:09 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:32:09 Using cached django-5.2.13-py3-none-any.whl (8.3 MB)
10:32:09 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
10:32:09 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
10:32:09 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
10:32:09 Using cached gunicorn-25.3.0-py3-none-any.whl (208 kB)
10:32:09 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
10:32:09 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
10:32:09 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
10:32:09 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
10:32:09 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
10:32:09 Building wheels for collected packages: omero-web
10:32:09 Building wheel for omero-web (pyproject.toml): started
10:32:10 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:32:10 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819315 sha256=8f8d94885f446ae8099bbd4960e60110f0663de2a031582c9d581f868228f5f1
10:32:10 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
10:32:10 Successfully built omero-web
10:32:10 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
10:32:13
10:32:13 Successfully installed Django-5.2.13 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.3.0 importlib-resources-7.1.0 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
10:32:13 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:32:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:32:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:32:14 --2026-05-01 10:32:14-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:32:14 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
10:32:14 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
10:32:14 HTTP request sent, awaiting response... 200 OK
10:32:15 Length: 139337 (136K) [text/plain]
10:32:15 Saving to: ‘Figure_To_Pdf.py’
10:32:15
10:32:15 0K .......... .......... .......... .......... .......... 36% 2.45M 0s
10:32:15 50K .......... .......... .......... .......... .......... 73% 9.03M 0s
10:32:15 100K .......... .......... .......... ...... 100% 4.13M=0.03s
10:32:15
10:32:15 2026-05-01 10:32:15 (3.92 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
10:32:15
10:32:15 + chmod 755 Figure_To_Pdf.py
10:32:15 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:32:15 + omero config set omero.db.name OMERO-server
10:32:17 + omero config set omero.db.host pg
10:32:19 + omero config set omero.db.user postgres
10:32:21 + omero config set omero.data.dir /home/omero/omero-server-data
10:32:23 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:32:25 + omero config set omero.db.poolsize 25
10:32:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:32:29 + omero config set omero.security.trustStorePassword changeit
10:32:31 + omero config set omero.mail.config true
10:32:33 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:32:35 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
10:32:37 + omero certificates
10:32:38 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
10:32:38 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:32:39 + '[' false = true ']'
10:32:39 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:32:39 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:32:39 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG dbcommand => upgrade
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG dbhost => localhost
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG dbname => OMERO-server
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG dbpass => omero
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG dbuser => omero
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG rootpass => omero
10:32:39 2026-05-01 10:32:39,321 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:32:39 2026-05-01 10:32:39,321 [omego.extern] INFO Executing : omero version
10:32:41 OMERO.py version:
10:32:41 OMERO.server version:
10:32:41 5.6.3-594-f2a9784d29-ice36-b142
10:32:41 5.22.2.dev0
10:32:41 2026-05-01 10:32:41,406 [omego.extern] INFO Completed [2.085 s]
10:32:41 2026-05-01 10:32:41,406 [omego.extern] DEBUG Using omero CLI from omero
10:32:41 2026-05-01 10:32:41,406 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:32:41 2026-05-01 10:32:41,406 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:32:41 2026-05-01 10:32:41,406 [omego.extern] INFO Executing : omero config get --show-password
10:32:43 2026-05-01 10:32:43,454 [omego.extern] INFO Completed [2.048 s]
10:32:43 2026-05-01 10:32:43,454 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:32:43 2026-05-01 10:32:43,454 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:32:43 2026-05-01 10:32:43,773 [omego.extern] INFO Completed [0.319 s]
10:32:43 2026-05-01 10:32:43,773 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
10:32:43 2026-05-01 10:32:43,773 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
10:32:43
10:32:43 2026-05-01 10:32:43,773 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:32:43 2026-05-01 10:32:43,774 [omego.extern] INFO Executing : omero config get --show-password
10:32:45 2026-05-01 10:32:45,822 [omego.extern] INFO Completed [2.049 s]
10:32:45 2026-05-01 10:32:45,822 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:32:45 2026-05-01 10:32:45,823 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:32:45 2026-05-01 10:32:45,978 [omego.extern] INFO Completed [0.155 s]
10:32:45 2026-05-01 10:32:45,978 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
10:32:45 2026-05-01 10:32:45,978 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:32:45 2026-05-01 10:32:45,978 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:32:45 2026-05-01 10:32:45,978 [omego.extern] INFO Executing : omero config get --show-password
10:32:47 2026-05-01 10:32:47,977 [omego.extern] INFO Completed [1.999 s]
10:32:47 2026-05-01 10:32:47,977 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:32:47 2026-05-01 10:32:47,977 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:32:48 2026-05-01 10:32:48,193 [omego.extern] INFO Completed [0.216 s]
10:32:48 2026-05-01 10:32:48,193 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:32:48 2026-05-01 10:32:48,193 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:32:48 2026-05-01 10:32:48,194 [ omego.db] INFO Database is already at OMERO5.4__0
10:32:48 + export LANG=en_US.UTF-8
10:32:48 + LANG=en_US.UTF-8
10:32:48 + export LANGUAGE=en_US:en
10:32:48 + LANGUAGE=en_US:en
10:32:48 + export LC_ALL=en_US.UTF-8
10:32:48 + LC_ALL=en_US.UTF-8
10:32:48 + BUILD_ID=DONT_KILL_ME
10:32:48 + omero admin start
10:32:54 No descriptor given. Using etc/grid/default.xml
10:33:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:33:04 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:33:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:33:04 Waiting on startup. Use CTRL-C to exit
10:33:04 + omero admin waitup
10:33:06 Waiting on startup. Use CTRL-C to exit
10:33:06 + omero admin diagnostics
10:33:08
10:33:08 ================================================================================
10:33:08 OMERO Diagnostics (admin)
10:33:08 ================================================================================
10:33:08
10:33:08 Commands: java -version 17.0.17 (/usr/bin/java)
10:33:08 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:33:08 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:33:08 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:33:08 Commands: psql --version 16.11 (/usr/bin/psql)
10:33:08 Commands: openssl version 3.5.11 (/usr/bin/openssl)
10:33:08
10:33:08 Component: OMERO.py 5.22.2.dev0
10:33:08 Component: OMERO.server 5.6.3-594-f2a9784d29-ice36-b142
10:33:08
10:33:08 Server: icegridnode running
10:33:08 Server: Blitz-0 active (pid = 3311, enabled)
10:33:08 Server: Indexer-0 activating (enabled)
10:33:08 Server: OMERO.Glacier2 active (pid = 3379, enabled)
10:33:08 Server: OMERO.IceStorm active (pid = 3344, enabled)
10:33:08 Server: Processor-0 activating (enabled)
10:33:08 Server: Tables-0 activating (enabled)
10:33:08
10:33:08 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:33:08 Log files: Blitz-0.log 23.7 KB errors=0 warnings=1
10:33:08 Log files: DropBox.log n/a
10:33:08 Log files: FileServer.log n/a
10:33:08 Log files: Indexer-0.log 598 B
10:33:08 Log files: MonitorServer.log n/a
10:33:08 Log files: Processor-0.log 592 B
10:33:08 Log files: Tables-0.log 841 B
10:33:08 Log files: TestDropBox.log n/a
10:33:08 Log files: master.err empty
10:33:08 Log files: master.out 30.5 KB
10:33:08 Log files: Total size 0.06 MB
10:33:08
10:33:08
10:33:08 Environment:OMERO_HOME=(unset)
10:33:08 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:33:08 Environment:OMERO_NODE=(unset)
10:33:08 Environment:OMERO_MASTER=(unset)
10:33:08 Environment:OMERO_USERDIR=(unset)
10:33:08 Environment:OMERO_TMPDIR=(unset)
10:33:08 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:33:08 Environment:PYTHONPATH=(unset)
10:33:08 Environment:ICE_HOME=/opt/ice-3.6.5
10:33:08 Environment:LD_LIBRARY_PATH=(unset)
10:33:08 Environment:DYLD_LIBRARY_PATH=(unset)
10:33:08
10:33:08 OMERO SSL port:4064
10:33:08 OMERO TCP port:4063
10:33:08 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:33:08 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:33:08
10:33:08 JVM settings: Blitz-${index} -Xmx7200m
10:33:08 JVM settings: Indexer-${index} -Xmx4800m
10:33:08 JVM settings: PixelData-${index} -Xmx7200m
10:33:08 JVM settings: Repository-${index} -Xmx4800m
10:33:08
10:33:08 Jar: lib/server/formats-api.jar Bio-Formats API 8.6.0-SNAPSHOT 1 May 2026 eacce57e33ae3be0af24a39057bc70054672ae50
10:33:08 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.6.0-SNAPSHOT 1 May 2026 eacce57e33ae3be0af24a39057bc70054672ae50
10:33:08 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.6.0-SNAPSHOT 1 May 2026 eacce57e33ae3be0af24a39057bc70054672ae50
10:33:08 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 1 May 2026 b3fb4cc18a0244e5a25ecb102cabb7291fc2903e
10:33:08 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
10:33:08 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
10:33:08 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
10:33:08 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
10:33:08 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
10:33:08 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
10:33:08 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
10:33:09 + deactivate
10:33:09 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:33:09 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:33:09 + export PATH
10:33:09 + unset _OLD_VIRTUAL_PATH
10:33:09 + '[' -n '' ']'
10:33:09 + hash -r
10:33:09 + '[' -n '' ']'
10:33:09 + unset VIRTUAL_ENV
10:33:09 + unset VIRTUAL_ENV_PROMPT
10:33:09 + '[' '!' '' = nondestructive ']'
10:33:09 + unset -f deactivate
10:33:09 Finished: SUCCESS
