Console

12:00:34 Started by upstream project "Trigger" build number 18
12:00:34 originally caused by:
12:00:34  Started by user devspace
12:00:34 Running as SYSTEM
12:00:34 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
12:00:35 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10529595259635616893.sh
12:00:35 + source /home/settings.env
12:00:35 ++ OMERO_DB_HOST=pg
12:00:35 ++ OMERO_DB_USER=postgres
12:00:35 ++ OMERO_DB_PASS=
12:00:35 ++ OMERO_ROOT_PASS=omero
12:00:35 ++ OMERO_DATA_DIR=/OMERO
12:00:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:00:35 + OMERO_DB_NAME=OMERO-server
12:00:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:00:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:00:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:00:35 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:00:35 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
12:00:35 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:00:35 ++ deactivate nondestructive
12:00:35 ++ '[' -n '' ']'
12:00:35 ++ '[' -n '' ']'
12:00:35 ++ hash -r
12:00:35 ++ '[' -n '' ']'
12:00:35 ++ unset VIRTUAL_ENV
12:00:35 ++ unset VIRTUAL_ENV_PROMPT
12:00:35 ++ '[' '!' nondestructive = nondestructive ']'
12:00:35 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:00:35 ++ export VIRTUAL_ENV
12:00:35 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:00:35 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:00:35 ++ export PATH
12:00:35 ++ '[' -n '' ']'
12:00:35 ++ '[' -z '' ']'
12:00:35 ++ _OLD_VIRTUAL_PS1=
12:00:35 ++ PS1='(.venv3) '
12:00:35 ++ export PS1
12:00:35 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:00:35 ++ export VIRTUAL_ENV_PROMPT
12:00:35 ++ hash -r
12:00:35 + omero admin stop
12:01:05 Server not running
12:01:05 + echo not running
12:01:05 not running
12:01:05 + sleep 5
12:01:10 + deactivate
12:01:10 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:01:10 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:01:10 + export PATH
12:01:10 + unset _OLD_VIRTUAL_PATH
12:01:10 + '[' -n '' ']'
12:01:10 + hash -r
12:01:10 + '[' -n '' ']'
12:01:10 + unset VIRTUAL_ENV
12:01:10 + unset VIRTUAL_ENV_PROMPT
12:01:10 + '[' '!' '' = nondestructive ']'
12:01:10 + unset -f deactivate
12:01:10 + rm -rf /home/omero/workspace/OMERO-server/.venv3
12:03:33 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
12:03:54 + '[' false = true ']'
12:03:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
12:03:54 Skipping PURGE_DATA:CleanDbAndRepo
12:03:54 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
12:04:00 Copied 1 artifact from "OMERO-build" build number 11
12:04:00 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 10
12:04:00 Copied 2 artifacts from "OMERO-build-build" build number 21
12:04:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8434375248801950103.sh
12:04:01 + source /home/settings.env
12:04:01 ++ OMERO_DB_HOST=pg
12:04:01 ++ OMERO_DB_USER=postgres
12:04:01 ++ OMERO_DB_PASS=
12:04:01 ++ OMERO_ROOT_PASS=omero
12:04:01 ++ OMERO_DATA_DIR=/OMERO
12:04:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:04:01 + OMERO_DB_NAME=OMERO-server
12:04:01 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:04:01 + mkdir -p /home/omero/omero-server-data
12:04:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:04:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:04:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:04:01 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:04:01 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:04:01 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:04:01 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:04:01 ++ ls OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:04:01 + ZIP=OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:04:01 + '[' '!' -z '' ']'
12:04:01 + DIST=OMERO.server-5.6.3-624-8a224c870a-ice36-b11
12:04:01 + unzip OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:04:01 Archive:  OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/blitz/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/grid/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/profiles/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/error/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/grid/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/janelia/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/matplotlib/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/ncsa_paledit/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/seaborn/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/wcif/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/analysis_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/annotation_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/export_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/figure_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/import_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/util_scripts/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/server/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/misc/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__1/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__10/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__2/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__5/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__6/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__7/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__8/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__9/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__4/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__5/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__6/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__7/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.1__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__1/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__2/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__3/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/var/
12:04:01    creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/var/tmp/
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/LICENSE.txt  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/backup.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/blitz/mail-senders.example  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/blitz/mail-server.example  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/build.properties  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/env.bat  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/env.sh  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/hibernate.properties  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/ice.config  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/logback-cli.xml  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/logback-indexing-cli.xml  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/logback-indexing.xml  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/logback.xml  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/mime.types  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/node1.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/node2.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/omero.properties  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/profiles/psql  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/rollover.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/Windows.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/error/maintainance.html  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/grid/README  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/grid/default.xml  
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12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/grid/windefault.xml  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/ice.config  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/internal.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/master.cfg  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/robot.template  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/testdropbox.config  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/history.rst  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/OMEZarrReader.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/accessors-smart.jar  
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12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aggdesigner-algorithm.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aircompressor.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/antlr.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aopalliance.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/apiguardian-api.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/asm.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/avatica-core.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/avatica-metrics.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aws-java-sdk-core.jar  
12:04:01   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aws-java-sdk-kms.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/aws-java-sdk-s3.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/base.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-anim.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-awt-util.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-bridge.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-codec.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-constants.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-css.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-dom.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-ext.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-gvt.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-i18n.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-parser.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-script.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-shared-resources.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-svg-dom.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-svggen.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-transcoder.jar  
12:04:02   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/batik-util.jar  
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12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/OMERO3A__11.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-footer.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-header.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/schema.sql  
12:04:16   inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/views.sql  
12:04:16 + rm -f OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:04:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-624-8a224c870a-ice36-b11 /home/omero/workspace/OMERO-server/OMERO.server
12:04:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:04:16 ++ deactivate nondestructive
12:04:16 ++ '[' -n '' ']'
12:04:16 ++ '[' -n '' ']'
12:04:16 ++ hash -r
12:04:16 ++ '[' -n '' ']'
12:04:16 ++ unset VIRTUAL_ENV
12:04:16 ++ unset VIRTUAL_ENV_PROMPT
12:04:16 ++ '[' '!' nondestructive = nondestructive ']'
12:04:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:04:16 ++ export VIRTUAL_ENV
12:04:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:04:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:04:16 ++ export PATH
12:04:16 ++ '[' -n '' ']'
12:04:16 ++ '[' -z '' ']'
12:04:16 ++ _OLD_VIRTUAL_PS1=
12:04:16 ++ PS1='(.venv3) '
12:04:16 ++ export PS1
12:04:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:04:16 ++ export VIRTUAL_ENV_PROMPT
12:04:16 ++ hash -r
12:04:16 + pip install -U pip
12:04:17 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:04:18 Collecting pip
12:04:18   Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
12:04:18 Installing collected packages: pip
12:04:18   Attempting uninstall: pip
12:04:18     Found existing installation: pip 22.3.1
12:04:19     Uninstalling pip-22.3.1:
12:04:19       Successfully uninstalled pip-22.3.1
12:04:34 Successfully installed pip-26.1.2
12:04:34 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:04:35 Collecting zeroc-ice==3.6.5
12:04:35   Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:04:38      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.8 MB/s  0:00:02
12:04:38 Installing collected packages: zeroc-ice
12:04:42 Successfully installed zeroc-ice-3.6.5
12:04:42 + pip install markdown
12:04:43 Collecting markdown
12:04:43   Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
12:04:43 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
12:04:43 Installing collected packages: markdown
12:04:44 Successfully installed markdown-3.10.2
12:04:44 + pip install reportlab
12:04:45 Collecting reportlab
12:04:45   Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
12:04:45 Collecting pillow>=9.0.0 (from reportlab)
12:04:45   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
12:04:45 Collecting charset-normalizer (from reportlab)
12:04:45   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
12:04:45 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
12:04:45 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:04:46 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:04:46 Installing collected packages: pillow, charset-normalizer, reportlab
12:04:55 
12:04:55 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
12:04:55 + pip install omego
12:04:56 Collecting omego
12:04:56   Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
12:04:56 Collecting future (from omego)
12:04:56   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:04:56 Collecting yaclifw>=0.1.1 (from omego)
12:04:56   Using cached yaclifw-0.2.0-py3-none-any.whl
12:04:56 Collecting six (from yaclifw>=0.1.1->omego)
12:04:56   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:04:56 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
12:04:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:04:56 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:04:56 Installing collected packages: six, future, yaclifw, omego
12:05:02 
12:05:02 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
12:05:02 + pip install tables
12:05:03 Collecting tables
12:05:03   Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
12:05:04 Collecting numpy>=1.20.0 (from tables)
12:05:04   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
12:05:04 Collecting numexpr>=2.6.2 (from tables)
12:05:04   Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:05:04 Collecting packaging (from tables)
12:05:04   Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
12:05:04 Collecting py-cpuinfo (from tables)
12:05:04   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:05:04 Collecting blosc2>=2.3.0 (from tables)
12:05:04   Using cached blosc2-4.8.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
12:05:05 Collecting ndindex (from blosc2>=2.3.0->tables)
12:05:05   Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:05:05 Collecting msgpack (from blosc2>=2.3.0->tables)
12:05:05   Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
12:05:05 Collecting pydantic (from blosc2>=2.3.0->tables)
12:05:05   Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
12:05:05 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
12:05:05   Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
12:05:05 Collecting rich (from blosc2>=2.3.0->tables)
12:05:05   Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
12:05:05 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
12:05:05   Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
12:05:05 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
12:05:06 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
12:05:06 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
12:05:06 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
12:05:06 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached h2-4.3.0-py3-none-any.whl.metadata (5.1 kB)
12:05:06 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
12:05:06 Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
12:05:06   Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
12:05:07 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
12:05:07   Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
12:05:07 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
12:05:07   Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
12:05:07 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
12:05:07   Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
12:05:08 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
12:05:08   Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
12:05:08 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
12:05:08   Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
12:05:08 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
12:05:08   Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
12:05:08 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
12:05:08   Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
12:05:08 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
12:05:08   Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
12:05:08 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
12:05:08 Using cached blosc2-4.8.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
12:05:08 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:05:08 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:05:08 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
12:05:09 Using cached h2-4.3.0-py3-none-any.whl (61 kB)
12:05:09 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
12:05:09 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
12:05:09 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
12:05:09 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
12:05:09 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
12:05:09 Using cached idna-3.18-py3-none-any.whl (65 kB)
12:05:09 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
12:05:09 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
12:05:09 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
12:05:09 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:05:09 Using cached packaging-26.2-py3-none-any.whl (100 kB)
12:05:09 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:05:09 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
12:05:09 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
12:05:09 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
12:05:09 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
12:05:09 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
12:05:09 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
12:05:09 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
12:05:09 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
12:05:09 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
12:05:10 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
12:06:01 
12:06:01 Successfully installed annotated-types-0.7.0 anyio-4.14.2 blosc2-4.8.1 certifi-2026.6.17 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
12:06:01 + pip install jinja2
12:06:02 Collecting jinja2
12:06:02   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:06:02 Collecting MarkupSafe>=2.0 (from jinja2)
12:06:02   Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:06:02 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:06:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:06:02 Installing collected packages: MarkupSafe, jinja2
12:06:03 
12:06:03 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:06:03 + pip install omero-py
12:06:04 Collecting omero-py
12:06:04   Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
12:06:04 Collecting appdirs (from omero-py)
12:06:04   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:06:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
12:06:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
12:06:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
12:06:04 Collecting PyYAML (from omero-py)
12:06:04   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:06:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:06:05 Collecting requests (from omero-py)
12:06:05   Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
12:06:05 Collecting portalocker (from omero-py)
12:06:05   Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:06:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
12:06:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
12:06:05 Collecting urllib3<3,>=1.26 (from requests->omero-py)
12:06:05   Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
12:06:05 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.6.17)
12:06:05 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:06:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:06:05 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:06:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:06:05 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:06:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:06:05 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
12:06:26 
12:06:26 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
12:06:26 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
12:06:27 Collecting omero-metadata
12:06:27   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-z2csdscd/omero-metadata_81bbd1f52e7b40a091426bd2f70ea1a0
12:06:27   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-z2csdscd/omero-metadata_81bbd1f52e7b40a091426bd2f70ea1a0
12:06:28   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit db514c0a4893b3288c43283f05fa287ae5db541a
12:06:28   Installing build dependencies: started
12:06:29   Installing build dependencies: finished with status 'done'
12:06:29   Getting requirements to build wheel: started
12:06:29   Getting requirements to build wheel: finished with status 'done'
12:06:29   Preparing metadata (pyproject.toml): started
12:06:30   Preparing metadata (pyproject.toml): finished with status 'done'
12:06:30 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
12:06:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
12:06:30 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
12:06:30 Collecting pandas (from omero-metadata)
12:06:30   Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
12:06:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
12:06:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
12:06:30 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
12:06:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
12:06:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
12:06:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
12:06:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
12:06:30 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
12:06:30 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
12:06:30   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
12:06:30 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
12:06:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
12:06:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
12:06:30 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
12:06:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.6.17)
12:06:30 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
12:06:30 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
12:06:30 Building wheels for collected packages: omero-metadata
12:06:30   Building wheel for omero-metadata (pyproject.toml): started
12:06:31   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
12:06:31   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=e4750791a761878a98929c0fd24a8c7f857308e3db0440ba010a082094b753c3
12:06:31   Stored in directory: /tmp/pip-ephem-wheel-cache-z7n81ldw/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
12:06:31 Successfully built omero-metadata
12:06:31 Installing collected packages: python-dateutil, pandas, omero-metadata
12:07:17 
12:07:17 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0
12:07:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
12:07:18 Collecting omero-cli-render
12:07:18   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-sz7lkc32/omero-cli-render_742ad412f7a540d098f26b92a7b0c50e
12:07:18   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-sz7lkc32/omero-cli-render_742ad412f7a540d098f26b92a7b0c50e
12:07:20   Running command git checkout -b merge_ci --track origin/merge_ci
12:07:20   Switched to a new branch 'merge_ci'
12:07:20   branch 'merge_ci' set up to track 'origin/merge_ci'.
12:07:20   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 42190d3af48d39ba2a6e0bb060f12589364f3f2b
12:07:20   Installing build dependencies: started
12:07:21   Installing build dependencies: finished with status 'done'
12:07:21   Getting requirements to build wheel: started
12:07:22   Getting requirements to build wheel: finished with status 'done'
12:07:22   Preparing metadata (pyproject.toml): started
12:07:22   Preparing metadata (pyproject.toml): finished with status 'done'
12:07:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
12:07:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
12:07:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
12:07:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
12:07:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
12:07:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
12:07:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
12:07:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
12:07:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
12:07:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
12:07:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
12:07:22 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
12:07:22 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.6.17)
12:07:22 Building wheels for collected packages: omero-cli-render
12:07:22   Building wheel for omero-cli-render (pyproject.toml): started
12:07:22   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
12:07:22   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=bde3a09fe2dd0aba52cef232aefadca8166ff5f19aa08d5d72356a431c6837de
12:07:22   Stored in directory: /tmp/pip-ephem-wheel-cache-hr5pdtry/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
12:07:22 Successfully built omero-cli-render
12:07:22 Installing collected packages: omero-cli-render
12:07:23 Successfully installed omero-cli-render-0.8.2.dev0
12:07:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
12:07:23 Collecting omero-cli-duplicate
12:07:23   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ijr8golu/omero-cli-duplicate_679943f2421846f3996f87f774932b6b
12:07:23   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ijr8golu/omero-cli-duplicate_679943f2421846f3996f87f774932b6b
12:07:24   Running command git checkout -b merge_ci --track origin/merge_ci
12:07:25   Switched to a new branch 'merge_ci'
12:07:25   branch 'merge_ci' set up to track 'origin/merge_ci'.
12:07:25   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit bc56aa458168ad5e6d5c62d74f89f5ccc108994c
12:07:25   Installing build dependencies: started
12:07:26   Installing build dependencies: finished with status 'done'
12:07:26   Getting requirements to build wheel: started
12:07:26   Getting requirements to build wheel: finished with status 'done'
12:07:26   Preparing metadata (pyproject.toml): started
12:07:27   Preparing metadata (pyproject.toml): finished with status 'done'
12:07:27 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
12:07:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
12:07:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
12:07:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
12:07:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
12:07:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
12:07:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
12:07:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
12:07:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
12:07:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
12:07:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
12:07:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
12:07:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17)
12:07:27 Building wheels for collected packages: omero-cli-duplicate
12:07:27   Building wheel for omero-cli-duplicate (pyproject.toml): started
12:07:27   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
12:07:27   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=5b3b0f280207c0e6189cb3cb7a2ce35c602d7f99bceecb4c5d6d6ea087e621a8
12:07:27   Stored in directory: /tmp/pip-ephem-wheel-cache-3vzzudar/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
12:07:27 Successfully built omero-cli-duplicate
12:07:27 Installing collected packages: omero-cli-duplicate
12:07:27 Successfully installed omero-cli-duplicate-0.4.1.dev0
12:07:27 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
12:07:28 Collecting omero-cli-zarr
12:07:28   Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-p0cvjy9l/omero-cli-zarr_b9d6251a69ad4b4ab0e94818bbf6fe9c
12:07:28   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-p0cvjy9l/omero-cli-zarr_b9d6251a69ad4b4ab0e94818bbf6fe9c
12:07:29   Running command git checkout -b merge_ci --track origin/merge_ci
12:07:29   Switched to a new branch 'merge_ci'
12:07:29   branch 'merge_ci' set up to track 'origin/merge_ci'.
12:07:29   Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit b1d17308e1e070be32c945ef92fd1650c8917efe
12:07:29   Installing build dependencies: started
12:07:31   Installing build dependencies: finished with status 'done'
12:07:31   Getting requirements to build wheel: started
12:07:31   Getting requirements to build wheel: finished with status 'done'
12:07:31   Installing backend dependencies: started
12:07:33   Installing backend dependencies: finished with status 'done'
12:07:33   Preparing metadata (pyproject.toml): started
12:07:33   Preparing metadata (pyproject.toml): finished with status 'done'
12:07:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
12:07:33 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
12:07:33   Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
12:07:33 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
12:07:33 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:33   Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB)
12:07:33 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:33   Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
12:07:34 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:34   Using cached fsspec-2026.6.0-py3-none-any.whl.metadata (10 kB)
12:07:34 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:34   Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
12:07:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
12:07:34 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:34   Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
12:07:34 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:34   Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
12:07:35 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
12:07:35 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
12:07:35 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
12:07:35 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB)
12:07:35 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
12:07:35 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2)
12:07:35 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
12:07:35 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
12:07:35 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
12:07:35 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached s3fs-2026.6.0-py3-none-any.whl.metadata (1.2 kB)
12:07:35 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:35   Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
12:07:36 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:36   Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
12:07:36 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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12:07:37 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
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12:07:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
12:07:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
12:07:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
12:07:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
12:07:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
12:07:37 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
12:07:37 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached aiobotocore-3.7.0-py3-none-any.whl.metadata (28 kB)
12:07:37 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
12:07:37 Collecting botocore<1.43.1,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached botocore-1.43.0-py3-none-any.whl.metadata (5.5 kB)
12:07:37 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
12:07:37 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:37   Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
12:07:38 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:38   Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
12:07:38 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:38   Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
12:07:38 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:38   Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
12:07:38 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:38   Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
12:07:38 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:38   Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
12:07:39 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:39   Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
12:07:39 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:39   Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
12:07:39 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:39   Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (94 kB)
12:07:39 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.1,>=1.42.90->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0)
12:07:39 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
12:07:39 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.18)
12:07:39 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:39   Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
12:07:40 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
12:07:40 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
12:07:40 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
12:07:40 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
12:07:40 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
12:07:40 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
12:07:40 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
12:07:40   Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
12:07:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9)
12:07:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.6.17)
12:07:40 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
12:07:41 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB)
12:07:41 Using cached click-8.4.2-py3-none-any.whl (119 kB)
12:07:41 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
12:07:41 Using cached fsspec-2026.6.0-py3-none-any.whl (203 kB)
12:07:41 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
12:07:41 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
12:07:41 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
12:07:41 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
12:07:41 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
12:07:41 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
12:07:41 Using cached s3fs-2026.6.0-py3-none-any.whl (32 kB)
12:07:41 Using cached aiobotocore-3.7.0-py3-none-any.whl (89 kB)
12:07:41 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
12:07:41 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
12:07:41 Using cached botocore-1.43.0-py3-none-any.whl (15.0 MB)
12:07:41 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
12:07:41 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
12:07:41 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB)
12:07:41 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (106 kB)
12:07:41 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
12:07:41 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
12:07:41 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
12:07:41 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
12:07:41 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
12:07:41 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
12:07:41 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
12:07:42 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
12:07:42 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
12:07:42 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
12:07:42 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
12:07:42 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
12:07:42 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
12:07:42 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
12:07:42 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
12:07:42 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
12:07:42 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
12:07:42 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
12:07:42 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
12:07:42 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
12:07:42 Building wheels for collected packages: omero-cli-zarr
12:07:42   Building wheel for omero-cli-zarr (pyproject.toml): started
12:07:43   Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
12:07:43   Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+gb1d1730-py3-none-any.whl size=38288 sha256=a45ccc82aa3dc7dc4dea3411a12ea8b01e328b916940952da89f4c7a29598bc7
12:07:43   Stored in directory: /tmp/pip-ephem-wheel-cache-5bzpdxst/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
12:07:43 Successfully built omero-cli-zarr
12:07:43 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
12:08:25   Attempting uninstall: pydantic-core
12:08:25     Found existing installation: pydantic_core 2.46.4
12:08:25     Uninstalling pydantic_core-2.46.4:
12:08:25       Successfully uninstalled pydantic_core-2.46.4
12:09:05   Attempting uninstall: pydantic
12:09:05     Found existing installation: pydantic 2.13.4
12:09:05     Uninstalling pydantic-2.13.4:
12:09:05       Successfully uninstalled pydantic-2.13.4
12:09:52 
12:09:52 Successfully installed Deprecated-1.3.1 aiobotocore-3.7.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.1 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.0 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+gb1d1730 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.2 zarr-3.1.6 zipp-4.1.0
12:09:53 + pip install omero-certificates
12:09:54 Collecting omero-certificates
12:09:54   Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
12:09:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
12:09:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
12:09:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
12:09:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
12:09:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
12:09:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
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12:09:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
12:09:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
12:09:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
12:09:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
12:09:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
12:09:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17)
12:09:54 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
12:09:54 Installing collected packages: omero-certificates
12:09:55 Successfully installed omero-certificates-0.4.0
12:09:55 + for x in *.tar.gz
12:09:55 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
12:09:55 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:09:55   Installing build dependencies: started
12:09:57   Installing build dependencies: finished with status 'done'
12:09:57   Getting requirements to build wheel: started
12:09:57   Getting requirements to build wheel: finished with status 'done'
12:09:57   Preparing metadata (pyproject.toml): started
12:09:57   Preparing metadata (pyproject.toml): finished with status 'done'
12:09:57 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
12:09:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
12:09:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
12:09:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
12:09:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
12:09:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
12:09:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:09:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
12:09:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
12:09:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
12:09:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
12:09:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
12:09:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
12:09:57 Building wheels for collected packages: omero-dropbox
12:09:58   Building wheel for omero-dropbox (pyproject.toml): started
12:09:58   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:09:58   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=8193495f76ee1dac76de600b7f3a25e2816619e9bf1f718ac2c0464b46420910
12:09:58   Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
12:09:58 Successfully built omero-dropbox
12:09:58 Installing collected packages: omero-dropbox
12:09:59 Successfully installed omero-dropbox-5.7.1.dev0
12:09:59 + for x in *.tar.gz
12:09:59 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
12:09:59 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:09:59   Installing build dependencies: started
12:10:01   Installing build dependencies: finished with status 'done'
12:10:01   Getting requirements to build wheel: started
12:10:01   Getting requirements to build wheel: finished with status 'done'
12:10:01   Preparing metadata (pyproject.toml): started
12:10:01   Preparing metadata (pyproject.toml): finished with status 'done'
12:10:01 Building wheels for collected packages: omero_marshal
12:10:01   Building wheel for omero_marshal (pyproject.toml): started
12:10:02   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:10:02   Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=5696ddcc4fd7be7e693f9b04741c38ceda2f2c7dd9ffd0e6949fb60697619299
12:10:02   Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
12:10:02 Successfully built omero_marshal
12:10:02 Installing collected packages: omero_marshal
12:10:04 Successfully installed omero_marshal-0.9.2.dev0
12:10:04 + for x in *.tar.gz
12:10:04 + pip install -U omero_py-5.22.2.dev0.tar.gz
12:10:05 Processing ./omero_py-5.22.2.dev0.tar.gz
12:10:06   Installing build dependencies: started
12:10:07   Installing build dependencies: finished with status 'done'
12:10:07   Getting requirements to build wheel: started
12:10:07   Getting requirements to build wheel: finished with status 'done'
12:10:07   Preparing metadata (pyproject.toml): started
12:10:08   Preparing metadata (pyproject.toml): finished with status 'done'
12:10:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
12:10:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
12:10:08 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
12:10:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
12:10:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
12:10:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
12:10:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
12:10:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
12:10:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
12:10:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
12:10:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
12:10:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
12:10:08 Building wheels for collected packages: omero-py
12:10:08   Building wheel for omero-py (pyproject.toml): started
12:10:09   Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:10:09   Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=7abf980d78d1fb0e22e6b8591e8bafa46d4f0efe485f189d15916510d235afb0
12:10:09   Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
12:10:09 Successfully built omero-py
12:10:09 Installing collected packages: omero-py
12:10:09   Attempting uninstall: omero-py
12:10:09     Found existing installation: omero-py 5.22.1
12:10:10     Uninstalling omero-py-5.22.1:
12:10:22       Successfully uninstalled omero-py-5.22.1
12:10:41 Successfully installed omero-py-5.22.2.dev0
12:10:41 + for x in *.tar.gz
12:10:41 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
12:10:42 Processing ./omero_scripts-5.10.1.dev0.tar.gz
12:10:42   Installing build dependencies: started
12:10:43   Installing build dependencies: finished with status 'done'
12:10:43   Getting requirements to build wheel: started
12:10:44   Getting requirements to build wheel: finished with status 'done'
12:10:44   Preparing metadata (pyproject.toml): started
12:10:44   Preparing metadata (pyproject.toml): finished with status 'done'
12:10:44 Building wheels for collected packages: omero-scripts
12:10:44   Building wheel for omero-scripts (pyproject.toml): started
12:10:44   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:10:44   Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=47970a48c22ac854ac7c28642ed7c6058c9ff60d7e79fe734e37018976249ba7
12:10:44   Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
12:10:44 Successfully built omero-scripts
12:10:45 Installing collected packages: omero-scripts
12:10:46 Successfully installed omero-scripts-5.10.1.dev0
12:10:46 + for x in *.tar.gz
12:10:46 + pip install -U omero_web-5.32.1.dev0.tar.gz
12:10:47 Processing ./omero_web-5.32.1.dev0.tar.gz
12:10:47   Installing build dependencies: started
12:10:48   Installing build dependencies: finished with status 'done'
12:10:48   Getting requirements to build wheel: started
12:10:49   Getting requirements to build wheel: finished with status 'done'
12:10:49   Preparing metadata (pyproject.toml): started
12:10:49   Preparing metadata (pyproject.toml): finished with status 'done'
12:10:49 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
12:10:49 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
12:10:49   Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
12:10:49 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
12:10:49   Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
12:10:50 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
12:10:50   Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:10:50 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
12:10:50   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:10:50 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
12:10:50   Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
12:10:50 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
12:10:50   Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
12:10:50 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
12:10:50 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
12:10:50 Collecting pytz (from omero-web==5.32.1.dev0)
12:10:50   Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
12:10:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
12:10:50 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
12:10:50 Collecting importlib-resources (from omero-web==5.32.1.dev0)
12:10:50   Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
12:10:50 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:10:50   Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
12:10:51 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:10:51   Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:10:51 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
12:10:51 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
12:10:51   Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
12:10:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
12:10:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
12:10:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
12:10:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
12:10:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
12:10:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
12:10:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
12:10:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
12:10:51 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
12:10:51 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
12:10:51 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:10:51 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
12:10:51 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
12:10:51 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
12:10:51 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:10:51 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
12:10:51 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:10:51 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
12:10:51 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
12:10:51 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
12:10:51 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
12:10:51 Building wheels for collected packages: omero-web
12:10:51   Building wheel for omero-web (pyproject.toml): started
12:10:52   Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:10:53   Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=db97cf6eeb7b1360d399f4c2ba43ce8471df6c42fb174e635d71f28a8fd5458e
12:10:53   Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
12:10:53 Successfully built omero-web
12:10:53 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:12:14 
12:12:14 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
12:12:14 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:12:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:12:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:12:14 --2026-07-16 12:12:14--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:12:14 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ...
12:12:14 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
12:12:15 HTTP request sent, awaiting response... 200 OK
12:12:15 Length: 139337 (136K) [text/plain]
12:12:15 Saving to: ‘Figure_To_Pdf.py’
12:12:15 
12:12:15      0K .......... .......... .......... .......... .......... 36% 2.88M 0s
12:12:15     50K .......... .......... .......... .......... .......... 73% 4.69M 0s
12:12:15    100K .......... .......... .......... ......               100% 7.19M=0.03s
12:12:15 
12:12:15 2026-07-16 12:12:15 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
12:12:15 
12:12:15 + chmod 755 Figure_To_Pdf.py
12:12:15 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
12:12:15 + omero config set omero.db.name OMERO-server
12:12:22 + omero config set omero.db.host pg
12:12:26 + omero config set omero.db.user postgres
12:12:31 + omero config set omero.data.dir /home/omero/omero-server-data
12:12:36 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
12:12:41 + omero config set omero.db.poolsize 25
12:12:46 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
12:12:51 + omero config set omero.security.trustStorePassword changeit
12:12:55 + omero config set omero.mail.config true
12:13:00 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
12:13:05 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
12:13:10 + omero certificates
12:13:14 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
12:13:14 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
12:13:14 + '[' false = true ']'
12:13:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
12:13:14 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
12:13:14 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG            dbcommand => upgrade
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG               dbhost => localhost
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG               dbname => OMERO-server
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG               dbpass => omero
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG               dbuser => omero
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG             rootpass => omero
12:13:14 2026-07-16 12:13:14,878 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
12:13:14 2026-07-16 12:13:14,879 [omego.extern] INFO  Executing : omero version
12:13:19 OMERO.py version:
12:13:19 OMERO.server version:
12:13:19 5.6.3-624-8a224c870a-ice36-b11
12:13:19 5.22.2.dev0
12:13:19 2026-07-16 12:13:19,802 [omego.extern] INFO  Completed [4.923 s]
12:13:19 2026-07-16 12:13:19,802 [omego.extern] DEBUG Using omero CLI from omero
12:13:19 2026-07-16 12:13:19,803 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
12:13:19 2026-07-16 12:13:19,803 [omego.extern] INFO  Running [current environment]: omero config get --show-password
12:13:19 2026-07-16 12:13:19,803 [omego.extern] INFO  Executing : omero config get --show-password
12:13:24 2026-07-16 12:13:24,612 [omego.extern] INFO  Completed [4.809 s]
12:13:24 2026-07-16 12:13:24,612 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
12:13:24 2026-07-16 12:13:24,612 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
12:13:24 2026-07-16 12:13:24,618 [omego.extern] INFO  Completed [0.006 s]
12:13:24 2026-07-16 12:13:24,618 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
12:13:24 2026-07-16 12:13:24,618 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.14
12:13:24 
12:13:24 2026-07-16 12:13:24,618 [omego.extern] INFO  Running [current environment]: omero config get --show-password
12:13:24 2026-07-16 12:13:24,619 [omego.extern] INFO  Executing : omero config get --show-password
12:13:29 2026-07-16 12:13:29,255 [omego.extern] INFO  Completed [4.637 s]
12:13:29 2026-07-16 12:13:29,255 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
12:13:29 2026-07-16 12:13:29,256 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
12:13:29 2026-07-16 12:13:29,273 [omego.extern] INFO  Completed [0.018 s]
12:13:29 2026-07-16 12:13:29,273 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
12:13:29 2026-07-16 12:13:29,273 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:13:29 2026-07-16 12:13:29,273 [omego.extern] INFO  Running [current environment]: omero config get --show-password
12:13:29 2026-07-16 12:13:29,273 [omego.extern] INFO  Executing : omero config get --show-password
12:13:34 2026-07-16 12:13:34,400 [omego.extern] INFO  Completed [5.127 s]
12:13:34 2026-07-16 12:13:34,400 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
12:13:34 2026-07-16 12:13:34,400 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:13:34 2026-07-16 12:13:34,526 [omego.extern] INFO  Completed [0.126 s]
12:13:34 2026-07-16 12:13:34,526 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
12:13:34 2026-07-16 12:13:34,526 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
12:13:34 2026-07-16 12:13:34,673 [    omego.db] INFO  Database is already at OMERO5.4__0
12:13:34 + export LANG=en_US.UTF-8
12:13:34 + LANG=en_US.UTF-8
12:13:34 + export LANGUAGE=en_US:en
12:13:34 + LANGUAGE=en_US:en
12:13:34 + export LC_ALL=en_US.UTF-8
12:13:34 + LC_ALL=en_US.UTF-8
12:13:34 + BUILD_ID=DONT_KILL_ME
12:13:34 + omero admin start
12:13:46 WARNING: lock files in /home/omero/omero-server-data
12:13:46 ----------------------------------------
12:13:46 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock
12:13:46 ----------------------------------------
12:13:46 
12:13:46 You may want to stop all server processes and remove
12:13:46 these files manually. Lock files can remain after an
12:13:46 abrupt server outage and are especially frequent on
12:13:46 remotely mounted filesystems like NFS.
12:13:46 
12:13:46 No descriptor given. Using etc/grid/default.xml
12:13:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
12:13:56 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
12:13:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
12:13:56 Waiting on startup. Use CTRL-C to exit
12:13:57 + omero admin waitup
12:14:01 Waiting on startup. Use CTRL-C to exit
12:14:02 + omero admin diagnostics
12:14:07 
12:14:07 ================================================================================
12:14:07 OMERO Diagnostics (admin)
12:14:07 ================================================================================
12:14:07         
12:14:07 Commands:   java -version                  21.0.11   (/usr/bin/java)
12:14:07 Commands:   python -V                      3.11.13   (/home/omero/workspace/OMERO-server/.venv3/bin/python)
12:14:07 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
12:14:07 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
12:14:07 Commands:   psql --version                 16.14     (/usr/bin/psql)
12:14:07 Commands:   openssl version                3.5.527   (/usr/bin/openssl)
12:14:07 
12:14:07 Component:  OMERO.py                       5.22.2.dev0
12:14:07 Component:  OMERO.server                   5.6.3-624-8a224c870a-ice36-b11
12:14:07 
12:14:07 Server:     icegridnode                    running
12:14:07 Server:     Blitz-0                        active (pid = 3326, enabled)
12:14:07 Server:     Indexer-0                      active (pid = 3348, enabled)
12:14:07 Server:     OMERO.Glacier2                 active (pid = 3373, enabled)
12:14:07 Server:     OMERO.IceStorm                 active (pid = 3375, enabled)
12:14:07 Server:     Processor-0                    active (pid = 3353, enabled)
12:14:07 Server:     Tables-0                       active (pid = 3369, enabled)
12:14:07 
12:14:07 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
12:14:07 Log files:  Blitz-0.log                    32.1 KB       errors=0    warnings=1   
12:14:07 Log files:  DropBox.log                    n/a
12:14:07 Log files:  FileServer.log                 n/a
12:14:07 Log files:  Indexer-0.log                  2.6 KB       
12:14:07 Log files:  MonitorServer.log              n/a
12:14:07 Log files:  Processor-0.log                735 B        
12:14:07 Log files:  Tables-0.log                   961 B        
12:14:07 Log files:  TestDropBox.log                n/a
12:14:07 Log files:  master.err                     empty
12:14:07 Log files:  master.out                     30.5 KB      
12:14:07 Log files:  Total size                     0.07 MB
12:14:07 
12:14:07 
12:14:07 Environment:OMERO_HOME=(unset)             
12:14:07 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
12:14:07 Environment:OMERO_NODE=(unset)             
12:14:07 Environment:OMERO_MASTER=(unset)           
12:14:07 Environment:OMERO_USERDIR=(unset)          
12:14:07 Environment:OMERO_TMPDIR=(unset)           
12:14:07 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
12:14:07 Environment:PYTHONPATH=(unset)             
12:14:07 Environment:ICE_HOME=/opt/ice-3.6.5        
12:14:07 Environment:LD_LIBRARY_PATH=(unset)        
12:14:07 Environment:DYLD_LIBRARY_PATH=(unset)      
12:14:07 
12:14:07 OMERO SSL port:4064                           
12:14:07 OMERO TCP port:4063                           
12:14:07 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
12:14:07 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
12:14:07 
12:14:07 JVM settings: Blitz-${index}                -Xmx7200m
12:14:07 JVM settings: Indexer-${index}              -Xmx4800m
12:14:07 JVM settings: PixelData-${index}            -Xmx7200m
12:14:07 JVM settings: Repository-${index}           -Xmx4800m
12:14:07 
12:14:07 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
12:14:07 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
12:14:07 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
12:14:07 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.3	26 February 2026	70fd9b72a9834f1af4852c1e5b5676c57a2c360e
12:14:07 Jar:        lib/server/ome-common.jar      OME Common Java	6.2.1	27 February 2026	a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
12:14:07 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5	30 June 2025	257a1c1410c0103485248d05752a5174262a38b6
12:14:07 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4	25 June 2025	57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
12:14:07 Jar:        lib/server/ome-poi.jar         OME POI	5.3.11	11 November 2025	a2f3944ac71db9e7e51a6f64ec46beeb60613afb
12:14:07 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.3	22 January 2026	21d1362abd9ce26e13888d2b2d028753d21ac96e
12:14:07 Jar:        lib/server/omero-blitz.jar     jar	5.8.6-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-common.jar    jar	5.7.6-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-gateway.jar   jar	5.11.1-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-model.jar     jar	5.7.6-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-renderer.jar  jar	5.6.6-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-romio.jar     jar	5.8.6-SNAPSHOT		
12:14:07 Jar:        lib/server/omero-server.jar    jar	5.7.6-SNAPSHOT		
12:14:08 + deactivate
12:14:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:14:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:14:08 + export PATH
12:14:08 + unset _OLD_VIRTUAL_PATH
12:14:08 + '[' -n '' ']'
12:14:08 + hash -r
12:14:08 + '[' -n '' ']'
12:14:08 + unset VIRTUAL_ENV
12:14:08 + unset VIRTUAL_ENV_PROMPT
12:14:08 + '[' '!' '' = nondestructive ']'
12:14:08 + unset -f deactivate
12:14:08 Finished: SUCCESS