15:20:01 Started by user devspace
15:20:01 Running as SYSTEM
15:20:01 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
15:20:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17731412833654433419.sh
15:20:01 + source /home/settings.env
15:20:01 ++ OMERO_DB_HOST=pg
15:20:01 ++ OMERO_DB_USER=postgres
15:20:01 ++ OMERO_DB_PASS=
15:20:01 ++ OMERO_ROOT_PASS=omero
15:20:01 ++ OMERO_DATA_DIR=/OMERO
15:20:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:20:01 + OMERO_DB_NAME=OMERO-server
15:20:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:20:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:20:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:20:01 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:20:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
15:20:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:20:01 ++ deactivate nondestructive
15:20:01 ++ '[' -n '' ']'
15:20:01 ++ '[' -n '' ']'
15:20:01 ++ hash -r
15:20:01 ++ '[' -n '' ']'
15:20:01 ++ unset VIRTUAL_ENV
15:20:01 ++ unset VIRTUAL_ENV_PROMPT
15:20:01 ++ '[' '!' nondestructive = nondestructive ']'
15:20:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:20:01 ++ export VIRTUAL_ENV
15:20:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:20:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:20:01 ++ export PATH
15:20:01 ++ '[' -n '' ']'
15:20:01 ++ '[' -z '' ']'
15:20:01 ++ _OLD_VIRTUAL_PS1=
15:20:01 ++ PS1='(.venv3) '
15:20:01 ++ export PS1
15:20:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:20:01 ++ export VIRTUAL_ENV_PROMPT
15:20:01 ++ hash -r
15:20:01 + omero admin stop
15:20:27 Server not running
15:20:27 + echo not running
15:20:27 not running
15:20:27 + sleep 5
15:20:32 + deactivate
15:20:32 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:20:32 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:20:32 + export PATH
15:20:32 + unset _OLD_VIRTUAL_PATH
15:20:32 + '[' -n '' ']'
15:20:32 + hash -r
15:20:32 + '[' -n '' ']'
15:20:32 + unset VIRTUAL_ENV
15:20:32 + unset VIRTUAL_ENV_PROMPT
15:20:32 + '[' '!' '' = nondestructive ']'
15:20:32 + unset -f deactivate
15:20:32 + rm -rf /home/omero/workspace/OMERO-server/.venv3
15:20:34 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
15:20:38 + '[' false = true ']'
15:20:38 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
15:20:38 Skipping PURGE_DATA:CleanDbAndRepo
15:20:38 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
15:20:40 Copied 1 artifact from "OMERO-build" build number 148
15:20:40 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 139
15:20:40 Copied 2 artifacts from "OMERO-build-build" build number 159
15:20:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5166174002315583534.sh
15:20:40 + source /home/settings.env
15:20:40 ++ OMERO_DB_HOST=pg
15:20:40 ++ OMERO_DB_USER=postgres
15:20:40 ++ OMERO_DB_PASS=
15:20:40 ++ OMERO_ROOT_PASS=omero
15:20:40 ++ OMERO_DATA_DIR=/OMERO
15:20:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:20:40 + OMERO_DB_NAME=OMERO-server
15:20:40 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:20:40 + mkdir -p /home/omero/omero-server-data
15:20:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:20:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:20:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:20:40 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:20:40 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:20:40 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:20:40 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:20:40 ++ ls OMERO.server-5.6.3-596-200ab96769-ice36-b148.zip
15:20:40 + ZIP=OMERO.server-5.6.3-596-200ab96769-ice36-b148.zip
15:20:40 + '[' '!' -z '' ']'
15:20:40 + DIST=OMERO.server-5.6.3-596-200ab96769-ice36-b148
15:20:40 + unzip OMERO.server-5.6.3-596-200ab96769-ice36-b148.zip
15:20:40 Archive: OMERO.server-5.6.3-596-200ab96769-ice36-b148.zip
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/blitz/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/grid/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/profiles/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/error/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/grid/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/janelia/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/matplotlib/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/ncsa_paledit/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/seaborn/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/luts/wcif/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/analysis_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/annotation_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/export_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/figure_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/import_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/scripts/omero/util_scripts/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/misc/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__1/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__10/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__11/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__2/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__3/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__4/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__5/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__6/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__7/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__8/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__9/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__4/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__5/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__6/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__7/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.1__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.2__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.2__0/t/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.3__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.4__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.0__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.1__1/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.2__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__1/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__2/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__3/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/var/
15:20:40 creating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/var/tmp/
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/LICENSE.txt
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/backup.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/blitz/mail-senders.example
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/blitz/mail-server.example
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/build.properties
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/env.bat
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/env.sh
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/hibernate.properties
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/ice.config
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/logback-cli.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/logback-indexing-cli.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/logback-indexing.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/logback.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/mime.types
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/node1.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/node2.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/omero.properties
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/profiles/psql
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/rollover.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/Windows.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/error/maintainance.html
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/grid/README
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/grid/default.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/grid/templates.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/grid/windefault.xml
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/ice.config
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/internal.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/master.cfg
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/templates/robot.template
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/etc/testdropbox.config
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/history.rst
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/OMEZarrReader.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/accessors-smart.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/activation.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aggdesigner-algorithm.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aircompressor.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/antlr.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aopalliance.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/apiguardian-api.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/asm.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/avatica-core.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/avatica-metrics.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aws-java-sdk-core.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aws-java-sdk-kms.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/aws-java-sdk-s3.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/base.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-anim.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-awt-util.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-bridge.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-codec.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-constants.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-css.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-dom.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-ext.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-gvt.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-i18n.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-parser.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-script.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-shared-resources.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-svg-dom.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-svggen.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-transcoder.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-util.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/batik-xml.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/btm.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/calcite-core.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/calcite-linq4j.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/cdm-core.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/checker-qual.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-beanutils.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-codec.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-collections.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-collections4.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-compiler.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-dbcp2.jar
15:20:40 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/client/commons-io.jar
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15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/ome-jai.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/ome-mdbtools.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/ome-poi.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/ome-xml.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-blitz.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-common.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-gateway.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-model.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-renderer.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-romio.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/omero-server.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/pdfbox.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/perf4j.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/postgresql.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/proj4j.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/protobuf-java.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/quartz.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/re2j.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/reflectasm.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/serializer.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/sketches-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/slf4j-api.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/snakeyaml.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/solr-analysis-extras.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/solr-commons-csv.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/solr-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/solr-solrj.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/specification.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-aop.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-beans.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-context-support.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-context.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-expression.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-jdbc.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-jms.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-ldap-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-messaging.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-orm.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-security-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-security-ldap.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/spring-tx.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/sqlite-jdbc.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/subethasmtp.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/turbojpeg.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/uzaygezen-core.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xalan.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xercesImpl.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xml-apis-ext.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xml-apis.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xmlgraphics-commons.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xmpcore.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/lib/server/xpp3.jar
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/README
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/agpl.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/antlr.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/apache-v1.1.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/apache-v2.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/asm.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/bouncy_castle_license.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/bsd.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/cddl-v1.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/cpl-v10.html
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/crystalclear.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/django.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/dom4j.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/epl-v1.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/fbsd.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/freemarker.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/gpl-v2.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/gpl.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/gtest.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/iconsweets_license.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/jamon.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/jmock.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/jquery.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/jtidy.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/lgpl-3.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/lgpl-v2.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/lgpl-v2.1.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/lgpl-v3.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/lgpl.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/matplotlib.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/mit.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/mpl-v1_0.htm
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/npl-1_1.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/path.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/pil.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/postgresql.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/psf-v2.0.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/psf-v2.5.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/scons.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/slf4j.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/tablelayout.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/which.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/zlib-libpng.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/share/licenses/zpl-v2.1.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/README.txt
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/misc/Makefile
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/misc/current.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/misc/enums.py
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__1/OMERO3__7.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__10/OMERO3A__9.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__11/OMERO3A__10.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__11/OMERO3A__5.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__2/OMERO3A__1.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__3/OMERO3A__2.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__3/OMERO3__5.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__4/OMERO3A__3.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__4/OMERO3__5.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__5/OMERO3A__4.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__6/OMERO3A__5.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__7/OMERO3A__6.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__8/OMERO3A__6.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3A__9/OMERO3A__8.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__4/OMERO3__1.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__5/OMERO3__4.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__6/OMERO3__5.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO3__7/OMERO3__6.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.1__0/OMERO4__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO4__0/OMERO3A__11.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/psql-footer.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/psql-header.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/schema.sql
15:20:42 inflating: OMERO.server-5.6.3-596-200ab96769-ice36-b148/sql/psql/OMERO5.4__0/views.sql
15:20:42 + rm -f OMERO.server-5.6.3-596-200ab96769-ice36-b148.zip
15:20:42 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-596-200ab96769-ice36-b148 /home/omero/workspace/OMERO-server/OMERO.server
15:20:42 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:20:42 ++ deactivate nondestructive
15:20:42 ++ '[' -n '' ']'
15:20:42 ++ '[' -n '' ']'
15:20:42 ++ hash -r
15:20:42 ++ '[' -n '' ']'
15:20:42 ++ unset VIRTUAL_ENV
15:20:42 ++ unset VIRTUAL_ENV_PROMPT
15:20:42 ++ '[' '!' nondestructive = nondestructive ']'
15:20:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:20:42 ++ export VIRTUAL_ENV
15:20:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:20:42 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:20:42 ++ export PATH
15:20:42 ++ '[' -n '' ']'
15:20:42 ++ '[' -z '' ']'
15:20:42 ++ _OLD_VIRTUAL_PS1=
15:20:42 ++ PS1='(.venv3) '
15:20:42 ++ export PS1
15:20:42 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:20:42 ++ export VIRTUAL_ENV_PROMPT
15:20:42 ++ hash -r
15:20:42 + pip install -U pip
15:20:43 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
15:20:43 Collecting pip
15:20:43 Using cached pip-26.1.1-py3-none-any.whl (1.8 MB)
15:20:43 Installing collected packages: pip
15:20:43 Attempting uninstall: pip
15:20:43 Found existing installation: pip 22.3.1
15:20:43 Uninstalling pip-22.3.1:
15:20:43 Successfully uninstalled pip-22.3.1
15:20:44 Successfully installed pip-26.1.1
15:20:44 WARNING: There was an error checking the latest version of pip.
15:20:44 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
15:20:44 Collecting zeroc-ice==3.6.5
15:20:45 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
15:20:47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.9 MB/s 0:00:02
15:20:47 Installing collected packages: zeroc-ice
15:20:48 Successfully installed zeroc-ice-3.6.5
15:20:48 + pip install markdown
15:20:49 Collecting markdown
15:20:49 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
15:20:49 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
15:20:49 Installing collected packages: markdown
15:20:49 Successfully installed markdown-3.10.2
15:20:50 + pip install reportlab
15:21:05 Collecting reportlab
15:21:05 Downloading reportlab-4.5.1-py3-none-any.whl.metadata (1.7 kB)
15:21:05 Collecting pillow>=9.0.0 (from reportlab)
15:21:05 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
15:21:06 Collecting charset-normalizer (from reportlab)
15:21:06 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
15:21:06 Downloading reportlab-4.5.1-py3-none-any.whl (2.0 MB)
15:21:06 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 13.8 MB/s 0:00:00
15:21:06 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
15:21:06 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
15:21:06 Installing collected packages: pillow, charset-normalizer, reportlab
15:21:07
15:21:07 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.5.1
15:21:07 + pip install omego
15:21:08 Collecting omego
15:21:08 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
15:21:08 Collecting future (from omego)
15:21:08 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
15:21:08 Collecting yaclifw>=0.1.1 (from omego)
15:21:08 Using cached yaclifw-0.2.0-py3-none-any.whl
15:21:08 Collecting six (from yaclifw>=0.1.1->omego)
15:21:08 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
15:21:08 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
15:21:08 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:21:08 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
15:21:08 Installing collected packages: six, future, yaclifw, omego
15:21:08
15:21:08 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
15:21:08 + pip install tables
15:21:10 Collecting tables
15:21:10 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
15:21:10 Collecting numpy>=1.20.0 (from tables)
15:21:10 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
15:21:10 Collecting numexpr>=2.6.2 (from tables)
15:21:10 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
15:21:10 Collecting packaging (from tables)
15:21:10 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
15:21:10 Collecting py-cpuinfo (from tables)
15:21:10 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
15:21:11 Collecting blosc2>=2.3.0 (from tables)
15:21:11 Using cached blosc2-4.2.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.4 kB)
15:21:11 Collecting ndindex (from blosc2>=2.3.0->tables)
15:21:11 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
15:21:11 Collecting msgpack (from blosc2>=2.3.0->tables)
15:21:11 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
15:21:11 Collecting pydantic (from blosc2>=2.3.0->tables)
15:21:11 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
15:21:11 Collecting requests (from blosc2>=2.3.0->tables)
15:21:11 Downloading requests-2.34.0-py3-none-any.whl.metadata (4.8 kB)
15:21:11 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
15:21:11 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
15:21:11 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
15:21:11 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
15:21:12 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
15:21:12 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
15:21:12 Collecting typing-extensions>=4.14.1 (from pydantic->blosc2>=2.3.0->tables)
15:21:12 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
15:21:12 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
15:21:12 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
15:21:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
15:21:12 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
15:21:12 Downloading idna-3.15-py3-none-any.whl.metadata (7.7 kB)
15:21:12 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
15:21:12 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
15:21:12 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
15:21:12 Using cached certifi-2026.4.22-py3-none-any.whl.metadata (2.5 kB)
15:21:12 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
15:21:12 Using cached blosc2-4.2.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (6.4 MB)
15:21:12 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
15:21:12 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
15:21:13 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
15:21:13 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
15:21:13 Using cached packaging-26.2-py3-none-any.whl (100 kB)
15:21:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
15:21:13 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
15:21:13 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
15:21:13 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
15:21:13 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
15:21:13 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
15:21:13 Downloading requests-2.34.0-py3-none-any.whl (73 kB)
15:21:13 Downloading idna-3.15-py3-none-any.whl (72 kB)
15:21:13 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
15:21:13 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB)
15:21:13 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
15:21:13 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, threadpoolctl, packaging, numpy, ndindex, msgpack, idna, certifi, annotated-types, typing-inspection, requests, pydantic-core, numexpr, pydantic, blosc2, tables
15:21:18
15:21:18 Successfully installed annotated-types-0.7.0 blosc2-4.2.0 certifi-2026.4.22 idna-3.15 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 requests-2.34.0 tables-3.11.1 threadpoolctl-3.6.0 typing-extensions-4.15.0 typing-inspection-0.4.2 urllib3-2.7.0
15:21:18 + pip install jinja2
15:21:34 Collecting jinja2
15:21:34 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
15:21:34 Collecting MarkupSafe>=2.0 (from jinja2)
15:21:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
15:21:34 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
15:21:34 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
15:21:34 Installing collected packages: MarkupSafe, jinja2
15:21:34
15:21:34 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
15:21:34 + pip install omero-py
15:21:35 Collecting omero-py
15:21:35 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
15:21:35 Collecting appdirs (from omero-py)
15:21:35 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
15:21:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
15:21:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4)
15:21:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0)
15:21:35 Collecting PyYAML (from omero-py)
15:21:35 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
15:21:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
15:21:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.34.0)
15:21:35 Collecting portalocker (from omero-py)
15:21:35 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
15:21:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
15:21:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.15)
15:21:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.7.0)
15:21:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.4.22)
15:21:35 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
15:21:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:21:36 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
15:21:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:21:36 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
15:21:38
15:21:38 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
15:21:38 + pip install pyarrow
15:21:38 Collecting pyarrow
15:21:38 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
15:21:38 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (48.8 MB)
15:21:39 Installing collected packages: pyarrow
15:21:40 Successfully installed pyarrow-24.0.0
15:21:40 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
15:21:40 Collecting omero-metadata
15:21:40 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-3312nyss/omero-metadata_9a3a61e91bb8496facccdb37f7431d68
15:21:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-3312nyss/omero-metadata_9a3a61e91bb8496facccdb37f7431d68
15:21:41 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 805e326d4fe1574b823839ada643b24d437260d6
15:21:41 Installing build dependencies: started
15:21:42 Installing build dependencies: finished with status 'done'
15:21:42 Getting requirements to build wheel: started
15:21:43 Getting requirements to build wheel: finished with status 'done'
15:21:43 Preparing metadata (pyproject.toml): started
15:21:43 Preparing metadata (pyproject.toml): finished with status 'done'
15:21:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
15:21:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
15:21:43 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
15:21:43 Collecting pandas (from omero-metadata)
15:21:43 Downloading pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
15:21:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
15:21:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
15:21:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4)
15:21:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0)
15:21:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
15:21:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.0)
15:21:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
15:21:43 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
15:21:45 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
15:21:45 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
15:21:45 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
15:21:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
15:21:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.15)
15:21:45 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
15:21:45 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.4.22)
15:21:45 Downloading pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
15:21:46 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.3/11.3 MB 13.2 MB/s 0:00:00
15:21:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
15:21:46 Building wheels for collected packages: omero-metadata
15:21:46 Building wheel for omero-metadata (pyproject.toml): started
15:21:46 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
15:21:46 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=f64042e0bb5a2570c8174c88093679c9e9332d233892eaafd43db618febd43b8
15:21:46 Stored in directory: /tmp/pip-ephem-wheel-cache-fxlpizrn/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
15:21:46 Successfully built omero-metadata
15:21:46 Installing collected packages: python-dateutil, pandas, omero-metadata
15:21:50
15:21:50 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0
15:21:51 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
15:21:51 Collecting omero-cli-render
15:21:51 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-lenlcvei/omero-cli-render_d069f6557b38426da9a7dfd0fe3155f7
15:21:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-lenlcvei/omero-cli-render_d069f6557b38426da9a7dfd0fe3155f7
15:21:54 Running command git checkout -b merge_ci --track origin/merge_ci
15:21:54 Switched to a new branch 'merge_ci'
15:21:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:21:54 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 3425f35354c3a6382390c526bab6e0d448443056
15:21:54 Installing build dependencies: started
15:21:58 Installing build dependencies: finished with status 'done'
15:21:58 Getting requirements to build wheel: started
15:21:59 Getting requirements to build wheel: finished with status 'done'
15:21:59 Preparing metadata (pyproject.toml): started
15:21:59 Preparing metadata (pyproject.toml): finished with status 'done'
15:21:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
15:21:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
15:21:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
15:21:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
15:21:59 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4)
15:21:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0)
15:21:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
15:21:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.0)
15:21:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
15:21:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
15:21:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.15)
15:21:59 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
15:21:59 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.4.22)
15:21:59 Building wheels for collected packages: omero-cli-render
15:21:59 Building wheel for omero-cli-render (pyproject.toml): started
15:21:59 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
15:21:59 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=f8cd872332c74f1ebb0bea58a09a65a705525e49c662956d5aaf3ed818c7bd04
15:21:59 Stored in directory: /tmp/pip-ephem-wheel-cache-ztksh_zt/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
15:21:59 Successfully built omero-cli-render
15:21:59 Installing collected packages: omero-cli-render
15:21:59 Successfully installed omero-cli-render-0.8.2.dev0
15:21:59 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
15:22:00 Collecting omero-cli-duplicate
15:22:00 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-a9kgc44c/omero-cli-duplicate_2507831676854bbd9b2097541c82ab9a
15:22:00 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-a9kgc44c/omero-cli-duplicate_2507831676854bbd9b2097541c82ab9a
15:22:01 Running command git checkout -b merge_ci --track origin/merge_ci
15:22:01 Switched to a new branch 'merge_ci'
15:22:01 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:22:01 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 97127706df49bb9f06c705f69c4cd1d3518b45f8
15:22:01 Installing build dependencies: started
15:22:09 Installing build dependencies: finished with status 'done'
15:22:09 Getting requirements to build wheel: started
15:22:09 Getting requirements to build wheel: finished with status 'done'
15:22:09 Preparing metadata (pyproject.toml): started
15:22:09 Preparing metadata (pyproject.toml): finished with status 'done'
15:22:09 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
15:22:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
15:22:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
15:22:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4)
15:22:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0)
15:22:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
15:22:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
15:22:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.0)
15:22:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
15:22:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7)
15:22:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.15)
15:22:09 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
15:22:09 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.4.22)
15:22:09 Building wheels for collected packages: omero-cli-duplicate
15:22:09 Building wheel for omero-cli-duplicate (pyproject.toml): started
15:22:10 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
15:22:10 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=c9cd0fd55fb5520cbe64c7354ffd7e28681d3449cd093cfeaeffaf59dfd13c02
15:22:10 Stored in directory: /tmp/pip-ephem-wheel-cache-lzt9038q/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
15:22:10 Successfully built omero-cli-duplicate
15:22:10 Installing collected packages: omero-cli-duplicate
15:22:10 Successfully installed omero-cli-duplicate-0.4.1.dev0
15:22:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
15:22:10 Collecting omero-cli-zarr
15:22:10 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-b7teiqhi/omero-cli-zarr_cab5895ca19441d4a122c7ef204eb15d
15:22:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-b7teiqhi/omero-cli-zarr_cab5895ca19441d4a122c7ef204eb15d
15:23:13 fatal: unable to access 'https://github.com/snoopycrimecop/omero-cli-zarr.git/': Failed to connect to github.com port 443: Connection refused
15:23:13 fatal: could not fetch 32d63cc0428a5ce8d60f2b5df1e4165874795fb7 from promisor remote
15:23:13 warning: Clone succeeded, but checkout failed.
15:23:13 You can inspect what was checked out with 'git status'
15:23:13 and retry with 'git restore --source=HEAD :/'
15:23:13
15:23:13 error: subprocess-exited-with-error
15:23:13
15:23:13 × git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-b7teiqhi/omero-cli-zarr_cab5895ca19441d4a122c7ef204eb15d did not run successfully.
15:23:13 │ exit code: 128
15:23:13 ╰─> No available output.
15:23:13
15:23:13 note: This error originates from a subprocess, and is likely not a problem with pip.
15:23:13 ERROR: Failed to build 'omero-cli-zarr' when git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-b7teiqhi/omero-cli-zarr_cab5895ca19441d4a122c7ef204eb15d
15:23:13 Build step 'Execute shell' marked build as failure
15:23:13 Finished: FAILURE
