15:04:22 Started by user devspace
15:04:22 Running as SYSTEM
15:04:22 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
15:04:23 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6340671014422301164.sh
15:04:23 + source /home/settings.env
15:04:23 ++ OMERO_DB_HOST=pg
15:04:23 ++ OMERO_DB_USER=postgres
15:04:23 ++ OMERO_DB_PASS=
15:04:23 ++ OMERO_ROOT_PASS=omero
15:04:23 ++ OMERO_DATA_DIR=/OMERO
15:04:23 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:04:23 + OMERO_DB_NAME=OMERO-server
15:04:23 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:04:23 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:04:23 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:04:23 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:04:23 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
15:04:23 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:04:23 ++ deactivate nondestructive
15:04:23 ++ '[' -n '' ']'
15:04:23 ++ '[' -n '' ']'
15:04:23 ++ '[' -n /bin/bash -o -n '' ']'
15:04:23 ++ hash -r
15:04:23 ++ '[' -n '' ']'
15:04:23 ++ unset VIRTUAL_ENV
15:04:23 ++ '[' '!' nondestructive = nondestructive ']'
15:04:23 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:04:23 ++ export VIRTUAL_ENV
15:04:23 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:04:23 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:04:23 ++ export PATH
15:04:23 ++ '[' -n '' ']'
15:04:23 ++ '[' -z '' ']'
15:04:23 ++ _OLD_VIRTUAL_PS1=
15:04:23 ++ PS1='(.venv3) '
15:04:23 ++ export PS1
15:04:23 ++ '[' -n /bin/bash -o -n '' ']'
15:04:23 ++ hash -r
15:04:23 + omero admin stop
15:04:45 Server not running
15:04:45 + echo not running
15:04:45 not running
15:04:45 + sleep 5
15:04:50 + deactivate
15:04:50 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:04:50 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:04:50 + export PATH
15:04:50 + unset _OLD_VIRTUAL_PATH
15:04:50 + '[' -n '' ']'
15:04:50 + '[' -n /bin/bash -o -n '' ']'
15:04:50 + hash -r
15:04:50 + '[' -n '' ']'
15:04:50 + unset VIRTUAL_ENV
15:04:50 + '[' '!' '' = nondestructive ']'
15:04:50 + unset -f deactivate
15:04:50 + rm -rf /home/omero/workspace/OMERO-server/.venv3
15:04:51 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
15:04:54 + '[' false = true ']'
15:04:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
15:04:54 Skipping PURGE_DATA:CleanDbAndRepo
15:04:54 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
15:04:57 Copied 1 artifact from "OMERO-build" build number 157
15:04:58 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 155
15:04:58 Copied 2 artifacts from "OMERO-build-build" build number 161
15:04:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2709363308583219322.sh
15:04:58 + source /home/settings.env
15:04:58 ++ OMERO_DB_HOST=pg
15:04:58 ++ OMERO_DB_USER=postgres
15:04:58 ++ OMERO_DB_PASS=
15:04:58 ++ OMERO_ROOT_PASS=omero
15:04:58 ++ OMERO_DATA_DIR=/OMERO
15:04:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:04:58 + OMERO_DB_NAME=OMERO-server
15:04:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:04:58 + mkdir -p /home/omero/omero-server-data
15:04:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:04:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:04:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:04:58 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:04:58 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:04:58 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:04:58 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:04:58 ++ ls OMERO.server-5.6.3-500-84affee5bf-ice36.zip
15:04:58 + ZIP=OMERO.server-5.6.3-500-84affee5bf-ice36.zip
15:04:58 + '[' '!' -z '' ']'
15:04:58 + DIST=OMERO.server-5.6.3-500-84affee5bf-ice36
15:04:58 + unzip OMERO.server-5.6.3-500-84affee5bf-ice36.zip
15:04:58 Archive: OMERO.server-5.6.3-500-84affee5bf-ice36.zip
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/blitz/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/grid/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/profiles/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/error/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/grid/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/luts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/luts/janelia/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/luts/ncsa_paledit/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/luts/wcif/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/analysis_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/annotation_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/export_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/figure_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/import_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/scripts/omero/util_scripts/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/misc/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__1/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__10/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__11/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__2/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__3/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__4/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__5/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__6/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__7/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__8/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__9/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__4/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__5/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__6/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__7/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.1__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.2__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.2__0/t/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.3__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.4__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.0__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.1__1/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.2__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__1/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__2/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__3/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/
15:04:58 creating: OMERO.server-5.6.3-500-84affee5bf-ice36/var/
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/LICENSE.txt
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/backup.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/blitz/mail-senders.example
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/blitz/mail-server.example
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/build.properties
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/env.bat
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/env.sh
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/hibernate.properties
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/ice.config
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/logback-cli.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/logback-indexing-cli.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/logback-indexing.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/logback.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/mime.types
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/node1.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/node2.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/omero.properties
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/profiles/psql
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/rollover.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/Windows.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/error/maintainance.html
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/grid/README
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/grid/default.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/grid/templates.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/grid/windefault.xml
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/ice.config
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/internal.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/master.cfg
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/templates/robot.template
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/etc/testdropbox.config
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/history.rst
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/OMEZarrReader.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/activation.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aggdesigner-algorithm.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aircompressor.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/annotations.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/antlr.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aopalliance.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/avatica-core.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/avatica-metrics.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aws-java-sdk-core.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aws-java-sdk-kms.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/aws-java-sdk-s3.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/base.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-all.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-anim.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-awt-util.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-bridge.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-codec.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-constants.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-css.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-dom.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-ext.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-extension.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-gui-util.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-gvt.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-i18n.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-parser.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-rasterizer-ext.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-rasterizer.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-script.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-slideshow.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-squiggle-ext.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-squiggle.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-svg-dom.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-svgbrowser.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-svggen.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-svgpp.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-svgrasterizer.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-swing.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-transcoder.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-ttf2svg.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-util.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/batik-xml.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/btm.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/bufr.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/c3p0.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/calcite-core.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/calcite-linq4j.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/cdm-core.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/checker-qual.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/commons-beanutils.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/commons-codec.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/commons-collections.jar
15:04:58 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/client/commons-collections4.jar
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15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/protobuf-java.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/quartz.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/re2j.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/reflectasm.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/rhino.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/serializer.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/sketches-core.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/slf4j-api.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/snakeyaml.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/solr-analysis-extras.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/solr-commons-csv.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/solr-core.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/solr-solrj.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/specification.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-aop.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-beans.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-context-support.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-context.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-core.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-expression.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-jdbc.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-jms.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-ldap-core.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-messaging.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-orm.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-security-core.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-security-ldap.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/spring-tx.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/sqlite-jdbc.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/subethasmtp.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/turbojpeg.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/udunits.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xalan.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xercesImpl.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xml-apis-ext.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xml-apis.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xmlgraphics-commons.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xmpcore.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/lib/server/xpp3.jar
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/README
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/agpl.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/antlr.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/apache-v1.1.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/apache-v2.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/asm.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/bouncy_castle_license.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/bsd.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/cddl-v1.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/cpl-v10.html
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/crystalclear.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/django.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/dom4j.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/epl-v1.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/fbsd.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/freemarker.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/gpl-v2.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/gpl.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/gtest.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/iconsweets_license.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/jamon.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/jmock.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/jquery.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/jtidy.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/lgpl-3.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/lgpl-v2.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/lgpl-v2.1.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/lgpl-v3.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/lgpl.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/matplotlib.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/mit.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/mpl-v1_0.htm
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/npl-1_1.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/path.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/pil.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/postgresql.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/psf-v2.0.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/psf-v2.5.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/scons.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/slf4j.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/tablelayout.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/which.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/zlib-libpng.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/share/licenses/zpl-v2.1.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/README.txt
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/misc/Makefile
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/misc/current.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/misc/enums.py
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/psql-header.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/schema.sql
15:05:00 inflating: OMERO.server-5.6.3-500-84affee5bf-ice36/sql/psql/OMERO5.4__0/views.sql
15:05:00 + rm -f OMERO.server-5.6.3-500-84affee5bf-ice36.zip
15:05:00 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-500-84affee5bf-ice36 /home/omero/workspace/OMERO-server/OMERO.server
15:05:00 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:05:00 ++ deactivate nondestructive
15:05:00 ++ '[' -n '' ']'
15:05:00 ++ '[' -n '' ']'
15:05:00 ++ '[' -n /bin/bash -o -n '' ']'
15:05:00 ++ hash -r
15:05:00 ++ '[' -n '' ']'
15:05:00 ++ unset VIRTUAL_ENV
15:05:00 ++ '[' '!' nondestructive = nondestructive ']'
15:05:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:05:00 ++ export VIRTUAL_ENV
15:05:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:05:00 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:05:00 ++ export PATH
15:05:00 ++ '[' -n '' ']'
15:05:00 ++ '[' -z '' ']'
15:05:00 ++ _OLD_VIRTUAL_PS1=
15:05:00 ++ PS1='(.venv3) '
15:05:00 ++ export PS1
15:05:00 ++ '[' -n /bin/bash -o -n '' ']'
15:05:00 ++ hash -r
15:05:00 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
15:05:01 Collecting zeroc-ice==3.6.5
15:05:01 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
15:05:03 Installing collected packages: zeroc-ice
15:05:04 Successfully installed zeroc-ice-3.6.5
15:05:04 + pip install -U pip future
15:05:04 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
15:05:04 Collecting pip
15:05:04 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
15:05:05 Collecting future
15:05:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:05:05 Installing collected packages: pip, future
15:05:05 Attempting uninstall: pip
15:05:05 Found existing installation: pip 21.2.3
15:05:05 Uninstalling pip-21.2.3:
15:05:05 Successfully uninstalled pip-21.2.3
15:05:07 Successfully installed future-1.0.0 pip-24.2
15:05:07 + pip install markdown
15:05:08 Collecting markdown
15:05:08 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
15:05:08 Collecting importlib-metadata>=4.4 (from markdown)
15:05:08 Using cached importlib_metadata-8.4.0-py3-none-any.whl.metadata (4.7 kB)
15:05:08 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
15:05:08 Downloading zipp-3.20.1-py3-none-any.whl.metadata (3.7 kB)
15:05:08 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
15:05:08 Using cached importlib_metadata-8.4.0-py3-none-any.whl (26 kB)
15:05:08 Downloading zipp-3.20.1-py3-none-any.whl (9.0 kB)
15:05:08 Installing collected packages: zipp, importlib-metadata, markdown
15:05:08 Successfully installed importlib-metadata-8.4.0 markdown-3.7 zipp-3.20.1
15:05:08 + pip install reportlab
15:05:09 Collecting reportlab
15:05:09 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
15:05:09 Collecting pillow>=9.0.0 (from reportlab)
15:05:09 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
15:05:10 Collecting chardet (from reportlab)
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15:05:10 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
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15:05:10 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
15:05:10 Installing collected packages: pillow, chardet, reportlab
15:05:11 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
15:05:11 + pip install omego
15:05:12 Collecting omego
15:05:12 Using cached omego-0.7.0-py3-none-any.whl
15:05:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
15:05:12 Collecting yaclifw>=0.1.1 (from omego)
15:05:12 Using cached yaclifw-0.2.0-py3-none-any.whl
15:05:12 Collecting six (from yaclifw>=0.1.1->omego)
15:05:12 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
15:05:12 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
15:05:12 Installing collected packages: six, yaclifw, omego
15:05:12 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
15:05:12 + pip install tables
15:05:13 Collecting tables
15:05:13 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
15:05:13 Collecting numpy>=1.19.0 (from tables)
15:05:13 Downloading numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
15:05:14 Collecting numexpr>=2.6.2 (from tables)
15:05:14 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
15:05:15 Collecting packaging (from tables)
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15:05:15 Collecting py-cpuinfo (from tables)
15:05:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
15:05:15 Collecting blosc2>=2.3.0 (from tables)
15:05:15 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
15:05:15 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
15:05:15 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
15:05:15 Collecting msgpack (from blosc2>=2.3.0->tables)
15:05:15 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
15:05:15 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
15:05:15 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
15:05:15 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
15:05:15 Downloading numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
15:05:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 19.5/19.5 MB 20.6 MB/s eta 0:00:00
15:05:16 Using cached packaging-24.1-py3-none-any.whl (53 kB)
15:05:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
15:05:16 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
15:05:16 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
15:05:16 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
15:05:20 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
15:05:20 + pip install jinja2
15:05:20 Collecting jinja2
15:05:20 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
15:05:20 Collecting MarkupSafe>=2.0 (from jinja2)
15:05:20 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
15:05:20 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
15:05:20 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
15:05:20 Installing collected packages: MarkupSafe, jinja2
15:05:21 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
15:05:21 + pip install omero-py
15:05:21 Collecting omero-py
15:05:21 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB)
15:05:21 Collecting urllib3<2 (from omero-py)
15:05:21 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
15:05:21 Collecting appdirs (from omero-py)
15:05:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
15:05:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
15:05:22 Collecting numpy<2 (from omero-py)
15:05:22 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
15:05:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
15:05:22 Collecting PyYAML (from omero-py)
15:05:22 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
15:05:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
15:05:22 Collecting requests (from omero-py)
15:05:22 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
15:05:22 Collecting portalocker (from omero-py)
15:05:22 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
15:05:22 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
15:05:22 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
15:05:22 Collecting idna<4,>=2.5 (from requests->omero-py)
15:05:22 Using cached idna-3.8-py3-none-any.whl.metadata (9.9 kB)
15:05:22 Collecting certifi>=2017.4.17 (from requests->omero-py)
15:05:22 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
15:05:22 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB)
15:05:22 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
15:05:23 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
15:05:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:05:23 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
15:05:23 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
15:05:23 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
15:05:23 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
15:05:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
15:05:23 Using cached idna-3.8-py3-none-any.whl (66 kB)
15:05:23 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
15:05:23 Attempting uninstall: numpy
15:05:23 Found existing installation: numpy 2.0.2
15:05:23 Uninstalling numpy-2.0.2:
15:05:23 Successfully uninstalled numpy-2.0.2
15:05:27 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.8 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19
15:05:27 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
15:05:28 Collecting omero-metadata
15:05:28 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-zj2_4zfb/omero-metadata_4cc3c482a4c5440b8cfc7a96cf9e515d
15:05:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-zj2_4zfb/omero-metadata_4cc3c482a4c5440b8cfc7a96cf9e515d
15:05:29 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit baf299956ac4afcb761f05e18f4c36517fe8eb96
15:05:29 Installing build dependencies: started
15:05:31 Installing build dependencies: finished with status 'done'
15:05:31 Getting requirements to build wheel: started
15:05:31 Getting requirements to build wheel: finished with status 'done'
15:05:31 Preparing metadata (pyproject.toml): started
15:05:31 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4)
15:05:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
15:05:31 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
15:05:32 Collecting pandas (from omero-metadata)
15:05:32 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
15:05:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
15:05:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
15:05:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
15:05:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
15:05:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
15:05:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
15:05:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
15:05:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
15:05:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
15:05:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
15:05:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
15:05:32 Collecting pytz>=2020.1 (from pandas->omero-metadata)
15:05:32 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
15:05:32 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
15:05:32 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
15:05:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
15:05:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
15:05:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.8)
15:05:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4)
15:05:32 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
15:05:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
15:05:32 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
15:05:32 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
15:05:32 Building wheels for collected packages: omero-metadata
15:05:32 Building wheel for omero-metadata (pyproject.toml): started
15:05:34 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
15:05:34 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39114 sha256=a1b574df37b013a4afe739b642a48f0cbd9b8a958959592c66a0fa4f5550cd9b
15:05:34 Stored in directory: /tmp/pip-ephem-wheel-cache-g7sl229x/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
15:05:34 Successfully built omero-metadata
15:05:34 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
15:05:38 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
15:05:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
15:05:39 Collecting omero-cli-render
15:05:39 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-vnpktefj/omero-cli-render_35961e3150b14365977399b778eb3c26
15:05:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-vnpktefj/omero-cli-render_35961e3150b14365977399b778eb3c26
15:05:40 Running command git checkout -b merge_ci --track origin/merge_ci
15:05:40 Switched to a new branch 'merge_ci'
15:05:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:05:40 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 28d25860e959a03dca5c6fd8ccd173c9c701f747
15:05:40 Installing build dependencies: started
15:05:42 Installing build dependencies: finished with status 'done'
15:05:42 Getting requirements to build wheel: started
15:05:42 Getting requirements to build wheel: finished with status 'done'
15:05:42 Preparing metadata (pyproject.toml): started
15:05:42 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
15:05:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4)
15:05:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
15:05:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
15:05:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
15:05:42 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
15:05:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
15:05:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
15:05:42 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
15:05:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
15:05:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
15:05:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.8)
15:05:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4)
15:05:42 Building wheels for collected packages: omero-cli-render
15:05:42 Building wheel for omero-cli-render (pyproject.toml): started
15:05:42 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
15:05:42 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=5dc6fb7d9637123d53745f4eb173314c29f8a0e7a6684ff5e068a3f846501949
15:05:42 Stored in directory: /tmp/pip-ephem-wheel-cache-ev85_4js/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
15:05:42 Successfully built omero-cli-render
15:05:43 Installing collected packages: omero-cli-render
15:05:43 Successfully installed omero-cli-render-0.8.2.dev0
15:05:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
15:05:43 Collecting omero-cli-duplicate
15:05:43 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-sbpn9zdc/omero-cli-duplicate_89904c2db65745dabab129d4a26075c8
15:05:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-sbpn9zdc/omero-cli-duplicate_89904c2db65745dabab129d4a26075c8
15:05:44 Running command git checkout -b merge_ci --track origin/merge_ci
15:05:44 Switched to a new branch 'merge_ci'
15:05:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:05:44 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e1def985078688d9a59baf94286295531595deae
15:05:44 Installing build dependencies: started
15:05:46 Installing build dependencies: finished with status 'done'
15:05:46 Getting requirements to build wheel: started
15:05:46 Getting requirements to build wheel: finished with status 'done'
15:05:46 Preparing metadata (pyproject.toml): started
15:05:46 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:46 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4)
15:05:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
15:05:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
15:05:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
15:05:46 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
15:05:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
15:05:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
15:05:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
15:05:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
15:05:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
15:05:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
15:05:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.8)
15:05:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4)
15:05:46 Building wheels for collected packages: omero-cli-duplicate
15:05:46 Building wheel for omero-cli-duplicate (pyproject.toml): started
15:05:46 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
15:05:46 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=8bbc6b361a44a6ece92b21015b61ac017da380249caffe89f39160f6f5a36bee
15:05:46 Stored in directory: /tmp/pip-ephem-wheel-cache-2e8vitnh/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
15:05:46 Successfully built omero-cli-duplicate
15:05:47 Installing collected packages: omero-cli-duplicate
15:05:47 Successfully installed omero-cli-duplicate-0.4.1.dev0
15:05:47 + pip install omero-certificates
15:05:47 Collecting omero-certificates
15:05:47 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
15:05:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4)
15:05:47 Collecting distro==1.8.0 (from omero-certificates)
15:05:47 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
15:05:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
15:05:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
15:05:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
15:05:47 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
15:05:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
15:05:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
15:05:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
15:05:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
15:05:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
15:05:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
15:05:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.8)
15:05:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4)
15:05:47 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
15:05:47 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
15:05:47 Installing collected packages: distro, omero-certificates
15:05:47 Successfully installed distro-1.8.0 omero-certificates-0.3.2
15:05:47 + for x in *.tar.gz
15:05:47 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
15:05:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
15:05:48 Installing build dependencies: started
15:05:50 Installing build dependencies: finished with status 'done'
15:05:50 Getting requirements to build wheel: started
15:05:50 Getting requirements to build wheel: finished with status 'done'
15:05:50 Preparing metadata (pyproject.toml): started
15:05:50 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:50 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4)
15:05:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
15:05:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
15:05:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
15:05:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
15:05:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
15:05:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
15:05:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
15:05:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
15:05:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
15:05:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
15:05:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.8)
15:05:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4)
15:05:50 Building wheels for collected packages: omero-dropbox
15:05:50 Building wheel for omero-dropbox (pyproject.toml): started
15:05:50 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
15:05:50 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=c90aab9e87a61c8914253bf41744e318b76ad63d6563b898bde84ca436d9e8ef
15:05:50 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
15:05:50 Successfully built omero-dropbox
15:05:50 Installing collected packages: omero-dropbox
15:05:50 Successfully installed omero-dropbox-5.7.1.dev0
15:05:50 + for x in *.tar.gz
15:05:50 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
15:05:51 Processing ./omero_marshal-0.9.1.dev0.tar.gz
15:05:51 Installing build dependencies: started
15:05:53 Installing build dependencies: finished with status 'done'
15:05:53 Getting requirements to build wheel: started
15:05:53 Getting requirements to build wheel: finished with status 'done'
15:05:53 Preparing metadata (pyproject.toml): started
15:05:53 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:53 Building wheels for collected packages: omero_marshal
15:05:53 Building wheel for omero_marshal (pyproject.toml): started
15:05:53 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
15:05:53 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ec74d8891ba2292d0492578437aa1ca248ea80489a2e382fb8e7cb036253cbb2
15:05:53 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
15:05:54 Successfully built omero_marshal
15:05:54 Installing collected packages: omero_marshal
15:05:54 Successfully installed omero_marshal-0.9.1.dev0
15:05:54 + for x in *.tar.gz
15:05:54 + pip install -U omero_py-5.19.5.dev0.tar.gz
15:05:54 Processing ./omero_py-5.19.5.dev0.tar.gz
15:05:55 Installing build dependencies: started
15:05:56 Installing build dependencies: finished with status 'done'
15:05:56 Getting requirements to build wheel: started
15:05:57 Getting requirements to build wheel: finished with status 'done'
15:05:57 Preparing metadata (pyproject.toml): started
15:05:57 Preparing metadata (pyproject.toml): finished with status 'done'
15:05:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.19)
15:05:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4)
15:05:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0)
15:05:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4)
15:05:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0)
15:05:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2)
15:05:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5)
15:05:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3)
15:05:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1)
15:05:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2)
15:05:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.8)
15:05:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.7.4)
15:05:57 Building wheels for collected packages: omero-py
15:05:57 Building wheel for omero-py (pyproject.toml): started
15:05:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
15:05:58 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=fa51654c73a56b39fba0fd87afc2962fcb3ec9eafddfa25e41977cd712ddff1d
15:05:58 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16
15:05:58 Successfully built omero-py
15:05:58 Installing collected packages: omero-py
15:05:58 Attempting uninstall: omero-py
15:05:58 Found existing installation: omero-py 5.19.4
15:05:58 Uninstalling omero-py-5.19.4:
15:05:59 Successfully uninstalled omero-py-5.19.4
15:06:00 Successfully installed omero-py-5.19.5.dev0
15:06:00 + for x in *.tar.gz
15:06:00 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
15:06:01 Processing ./omero_scripts-5.8.4.dev0.tar.gz
15:06:01 Installing build dependencies: started
15:06:03 Installing build dependencies: finished with status 'done'
15:06:03 Getting requirements to build wheel: started
15:06:03 Getting requirements to build wheel: finished with status 'done'
15:06:03 Preparing metadata (pyproject.toml): started
15:06:03 Preparing metadata (pyproject.toml): finished with status 'done'
15:06:03 Building wheels for collected packages: omero-scripts
15:06:03 Building wheel for omero-scripts (pyproject.toml): started
15:06:03 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
15:06:03 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116559 sha256=5bf1c0d68c303d28360d27d80757b99b1f958b6772823059dfd0050c2ddc88cf
15:06:03 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
15:06:03 Successfully built omero-scripts
15:06:03 Installing collected packages: omero-scripts
15:06:03 Successfully installed omero-scripts-5.8.4.dev0
15:06:03 + for x in *.tar.gz
15:06:03 + pip install -U omero_web-5.27.1.dev0.tar.gz
15:06:04 Processing ./omero_web-5.27.1.dev0.tar.gz
15:06:04 Installing build dependencies: started
15:06:06 Installing build dependencies: finished with status 'done'
15:06:06 Getting requirements to build wheel: started
15:06:06 Getting requirements to build wheel: finished with status 'done'
15:06:06 Preparing metadata (pyproject.toml): started
15:06:06 Preparing metadata (pyproject.toml): finished with status 'done'
15:06:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (5.19.5.dev0)
15:06:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.1.dev0)
15:06:06 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
15:06:07 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.1.dev0)
15:06:07 Using cached Django-4.2.15-py3-none-any.whl.metadata (4.1 kB)
15:06:07 Collecting django-pipeline==2.1.0 (from omero-web==5.27.1.dev0)
15:06:07 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
15:06:07 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.1.dev0)
15:06:07 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
15:06:07 Collecting django-csp (from omero-web==5.27.1.dev0)
15:06:07 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
15:06:07 Collecting whitenoise>=5.3.0 (from omero-web==5.27.1.dev0)
15:06:07 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
15:06:07 Collecting gunicorn>=19.3 (from omero-web==5.27.1.dev0)
15:06:07 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
15:06:07 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (0.9.1.dev0)
15:06:07 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (10.4.0)
15:06:07 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2024.1)
15:06:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (2.10.1)
15:06:07 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.1.dev0) (24.1)
15:06:07 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0)
15:06:07 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
15:06:07 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.1.dev0)
15:06:07 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
15:06:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.19)
15:06:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.4.4)
15:06:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.0.0)
15:06:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (1.26.4)
15:06:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (6.0.2)
15:06:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.6.5)
15:06:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.1.dev0) (2.32.3)
15:06:07 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.1.dev0)
15:06:07 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
15:06:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.3.2)
15:06:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (3.8)
15:06:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.1.dev0) (2024.7.4)
15:06:07 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
15:06:07 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
15:06:07 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
15:06:07 Using cached Django-4.2.15-py3-none-any.whl (8.0 MB)
15:06:08 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
15:06:08 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
15:06:08 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
15:06:08 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
15:06:08 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
15:06:08 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
15:06:08 Building wheels for collected packages: omero-web
15:06:08 Building wheel for omero-web (pyproject.toml): started
15:06:09 Building wheel for omero-web (pyproject.toml): finished with status 'done'
15:06:09 Created wheel for omero-web: filename=omero_web-5.27.1.dev0-py3-none-any.whl size=2766640 sha256=31c5c44c842c0cf327388c6dfeb85be480c11b9e1ed5765b9910bea1cf0b6897
15:06:09 Stored in directory: /home/omero/.cache/pip/wheels/95/a2/6f/d45832b3b9dfb05411e1514f5c4953422c04f1662dacdfe59a
15:06:09 Successfully built omero-web
15:06:09 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
15:06:12 Successfully installed Django-4.2.15 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
15:06:12 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:06:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
15:06:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
15:06:12 --2024-08-27 15:06:12-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:06:13 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.108.133, ...
15:06:13 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
15:06:13 HTTP request sent, awaiting response... 200 OK
15:06:13 Length: 95606 (93K) [text/plain]
15:06:13 Saving to: ‘Figure_To_Pdf.py’
15:06:13
15:06:13 0K .......... .......... .......... .......... .......... 53% 2.86M 0s
15:06:13 50K .......... .......... .......... .......... ... 100% 7.74M=0.02s
15:06:13
15:06:13 2024-08-27 15:06:13 (4.05 MB/s) - ‘Figure_To_Pdf.py’ saved [95606/95606]
15:06:13
15:06:13 + chmod 755 Figure_To_Pdf.py
15:06:13 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
15:06:13 + omero config set omero.db.name OMERO-server
15:06:15 + omero config set omero.db.host pg
15:06:16 + omero config set omero.db.user postgres
15:06:17 + omero config set omero.data.dir /home/omero/omero-server-data
15:06:18 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
15:06:20 + omero config set omero.db.poolsize 25
15:06:21 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
15:06:22 + omero config set omero.security.trustStorePassword changeit
15:06:24 + omero config set omero.mail.config true
15:06:25 + omero config set omero.mail.from qa@openmicroscopy.org.uk
15:06:26 + omero config set omero.mail.host smtp.dundee.ac.uk
15:06:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
15:06:29 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
15:06:30 + omero certificates
15:06:31 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
15:06:31 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
15:06:31 + '[' false = true ']'
15:06:31 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
15:06:31 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
15:06:31 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG dbcommand => upgrade
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG dbhost => localhost
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG dbname => OMERO-server
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG dbpass => omero
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG dbuser => omero
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG rootpass => omero
15:06:32 2024-08-27 15:06:32,105 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
15:06:32 2024-08-27 15:06:32,105 [omego.extern] INFO Executing : omero version
15:06:33 OMERO.py version:
15:06:33 OMERO.server version:
15:06:33 5.6.3-500-84affee5bf-ice36
15:06:33 5.19.5.dev0
15:06:33 2024-08-27 15:06:33,513 [omego.extern] INFO Completed [1.407 s]
15:06:33 2024-08-27 15:06:33,513 [omego.extern] DEBUG Using omero CLI from omero
15:06:33 2024-08-27 15:06:33,513 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
15:06:33 2024-08-27 15:06:33,513 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:06:33 2024-08-27 15:06:33,513 [omego.extern] INFO Executing : omero config get --show-password
15:06:34 2024-08-27 15:06:34,827 [omego.extern] INFO Completed [1.314 s]
15:06:34 2024-08-27 15:06:34,827 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:06:34 2024-08-27 15:06:34,827 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
15:06:35 2024-08-27 15:06:35,105 [omego.extern] INFO Completed [0.277 s]
15:06:35 2024-08-27 15:06:35,105 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
15:06:35 2024-08-27 15:06:35,105 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
15:06:35
15:06:35 2024-08-27 15:06:35,105 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:06:35 2024-08-27 15:06:35,105 [omego.extern] INFO Executing : omero config get --show-password
15:06:36 2024-08-27 15:06:36,426 [omego.extern] INFO Completed [1.321 s]
15:06:36 2024-08-27 15:06:36,426 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:06:36 2024-08-27 15:06:36,427 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
15:06:36 2024-08-27 15:06:36,651 [omego.extern] INFO Completed [0.224 s]
15:06:36 2024-08-27 15:06:36,651 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.2") at port "5432".\n'
15:06:36 2024-08-27 15:06:36,651 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:06:36 2024-08-27 15:06:36,651 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:06:36 2024-08-27 15:06:36,651 [omego.extern] INFO Executing : omero config get --show-password
15:06:37 2024-08-27 15:06:37,973 [omego.extern] INFO Completed [1.322 s]
15:06:37 2024-08-27 15:06:37,974 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:06:37 2024-08-27 15:06:37,974 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:06:38 2024-08-27 15:06:38,707 [omego.extern] INFO Completed [0.733 s]
15:06:38 2024-08-27 15:06:38,707 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
15:06:38 2024-08-27 15:06:38,707 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
15:06:38 2024-08-27 15:06:38,709 [ omego.db] INFO Database is already at OMERO5.4__0
15:06:38 + export LANG=en_US.UTF-8
15:06:38 + LANG=en_US.UTF-8
15:06:38 + export LANGUAGE=en_US:en
15:06:38 + LANGUAGE=en_US:en
15:06:38 + export LC_ALL=en_US.UTF-8
15:06:38 + LC_ALL=en_US.UTF-8
15:06:38 + BUILD_ID=DONT_KILL_ME
15:06:38 + omero admin start
15:06:48 No descriptor given. Using etc/grid/default.xml
15:06:58 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
15:06:58 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
15:06:58 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
15:06:58 Waiting on startup. Use CTRL-C to exit
15:06:58 + omero admin waitup
15:06:59 Waiting on startup. Use CTRL-C to exit
15:06:59 + omero admin diagnostics
15:07:01
15:07:01 ================================================================================
15:07:01 OMERO Diagnostics (admin)
15:07:01 ================================================================================
15:07:01
15:07:01 Commands: java -version 11.0.22 (/usr/bin/java)
15:07:01 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
15:07:01 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
15:07:01 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
15:07:01 Commands: psql --version 16.2 (/usr/bin/psql)
15:07:01 Commands: openssl version 3.0.71 (/usr/bin/openssl)
15:07:01
15:07:01 Component: OMERO.py 5.19.5.dev0
15:07:01 Component: OMERO.server 5.6.3-500-84affee5bf-ice36
15:07:01
15:07:01 Server: icegridnode running
15:07:01 Server: Blitz-0 active (pid = 2757, enabled)
15:07:01 Server: Indexer-0 activating (enabled)
15:07:01 Server: OMERO.Glacier2 active (pid = 2786, enabled)
15:07:01 Server: OMERO.IceStorm active (pid = 2806, enabled)
15:07:01 Server: Processor-0 activating (enabled)
15:07:01 Server: Tables-0 activating (enabled)
15:07:01
15:07:01 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
15:07:01 Log files: Blitz-0.log 12.8 KB errors=0 warnings=1
15:07:01 Log files: DropBox.log n/a
15:07:01 Log files: FileServer.log n/a
15:07:01 Log files: Indexer-0.log 598 B
15:07:01 Log files: MonitorServer.log n/a
15:07:01 Log files: Processor-0.log 281 B
15:07:01 Log files: Tables-0.log 281 B
15:07:01 Log files: TestDropBox.log n/a
15:07:01 Log files: master.err 180 B
15:07:01 Log files: master.out 30.1 KB
15:07:01 Log files: Total size 0.04 MB
15:07:01
15:07:01
15:07:01 Environment:OMERO_HOME=(unset)
15:07:01 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:07:01 Environment:OMERO_NODE=(unset)
15:07:01 Environment:OMERO_MASTER=(unset)
15:07:01 Environment:OMERO_USERDIR=(unset)
15:07:01 Environment:OMERO_TMPDIR=(unset)
15:07:01 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:07:01 Environment:PYTHONPATH=(unset)
15:07:01 Environment:ICE_HOME=/opt/ice-3.6.5
15:07:01 Environment:LD_LIBRARY_PATH=(unset)
15:07:01 Environment:DYLD_LIBRARY_PATH=(unset)
15:07:01
15:07:01 OMERO SSL port:4064
15:07:01 OMERO TCP port:4063
15:07:01 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
15:07:01 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
15:07:01
15:07:01 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:07:01 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:07:01 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:07:01 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:07:01
15:07:01 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 26 August 2024 30b881f2f19e3084020f49f0761dc8d222690dbe
15:07:01 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 26 August 2024 30b881f2f19e3084020f49f0761dc8d222690dbe
15:07:01 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 26 August 2024 30b881f2f19e3084020f49f0761dc8d222690dbe
15:07:01 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 26 August 2024 081bf0f126114f32507f0b259250769ca0c9acbf
15:07:01 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
15:07:01 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
15:07:01 Jar: lib/server/omero-gateway.jar jar 5.9.3-SNAPSHOT
15:07:01 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
15:07:01 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
15:07:01 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
15:07:01 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
15:07:01 + deactivate
15:07:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:07:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:07:01 + export PATH
15:07:01 + unset _OLD_VIRTUAL_PATH
15:07:01 + '[' -n '' ']'
15:07:01 + '[' -n /bin/bash -o -n '' ']'
15:07:01 + hash -r
15:07:01 + '[' -n '' ']'
15:07:01 + unset VIRTUAL_ENV
15:07:01 + '[' '!' '' = nondestructive ']'
15:07:01 + unset -f deactivate
15:07:01 Finished: SUCCESS
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