00:45:47 Started by upstream project "Trigger" build number 191
00:45:47 originally caused by:
00:45:47 Started by timer
00:45:47 Running as SYSTEM
00:45:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8780047507485591381.sh
00:45:47 + source /home/settings.env
00:45:47 ++ OMERO_DB_HOST=pg
00:45:47 ++ OMERO_DB_USER=postgres
00:45:47 ++ OMERO_DB_PASS=
00:45:47 ++ OMERO_ROOT_PASS=omero
00:45:47 ++ OMERO_DATA_DIR=/OMERO
00:45:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:47 + OMERO_DB_NAME=OMERO-server
00:45:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:47 ++ deactivate nondestructive
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ '[' -n /bin/bash -o -n '' ']'
00:45:47 ++ hash -r
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ unset VIRTUAL_ENV
00:45:47 ++ '[' '!' nondestructive = nondestructive ']'
00:45:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:47 ++ export VIRTUAL_ENV
00:45:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:47 ++ export PATH
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ '[' -z '' ']'
00:45:47 ++ _OLD_VIRTUAL_PS1=
00:45:47 ++ PS1='(.venv3) '
00:45:47 ++ export PS1
00:45:47 ++ '[' -n /bin/bash -o -n '' ']'
00:45:47 ++ hash -r
00:45:47 + omero admin stop
00:45:55 Waiting on shutdown. Use CTRL-C to exit
00:45:55 .+ sleep 5
00:46:10 + deactivate
00:46:10 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:10 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:10 + export PATH
00:46:10 + unset _OLD_VIRTUAL_PATH
00:46:10 + '[' -n '' ']'
00:46:10 + '[' -n /bin/bash -o -n '' ']'
00:46:10 + hash -r
00:46:10 + '[' -n '' ']'
00:46:10 + unset VIRTUAL_ENV
00:46:10 + '[' '!' '' = nondestructive ']'
00:46:10 + unset -f deactivate
00:46:10 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:11 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:14 + '[' false = true ']'
00:46:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:14 Skipping PURGE_DATA:CleanDbAndRepo
00:46:14 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.5.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:17 Copied 1 artifact from "OMERO-build" build number 161
00:46:17 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 159
00:46:17 Copied 2 artifacts from "OMERO-build-build" build number 166
00:46:17 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12234949302259846725.sh
00:46:17 + source /home/settings.env
00:46:17 ++ OMERO_DB_HOST=pg
00:46:17 ++ OMERO_DB_USER=postgres
00:46:17 ++ OMERO_DB_PASS=
00:46:17 ++ OMERO_ROOT_PASS=omero
00:46:17 ++ OMERO_DATA_DIR=/OMERO
00:46:17 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:17 + OMERO_DB_NAME=OMERO-server
00:46:17 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:17 + mkdir -p /home/omero/omero-server-data
00:46:17 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:17 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:17 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:17 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:17 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:17 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:17 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:17 ++ ls OMERO.server-5.6.3-500-b7d7be90f8-ice36.zip
00:46:17 + ZIP=OMERO.server-5.6.3-500-b7d7be90f8-ice36.zip
00:46:17 + '[' '!' -z '' ']'
00:46:17 + DIST=OMERO.server-5.6.3-500-b7d7be90f8-ice36
00:46:17 + unzip OMERO.server-5.6.3-500-b7d7be90f8-ice36.zip
00:46:17 Archive: OMERO.server-5.6.3-500-b7d7be90f8-ice36.zip
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/blitz/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/grid/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/profiles/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/error/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/grid/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/luts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/luts/janelia/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/luts/ncsa_paledit/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/luts/wcif/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/analysis_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/annotation_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/export_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/figure_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/import_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/scripts/omero/util_scripts/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/server/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/share/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/share/licenses/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/misc/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__1/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__10/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__11/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__2/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__3/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__4/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__5/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__6/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__7/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__8/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3A__9/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3__4/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3__5/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3__6/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO3__7/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4.1__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4.2__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4.2__0/t/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4.3__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4.4__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO4__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.0__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.1__1/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.2__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.3__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4DEV__1/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4DEV__2/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4DEV__3/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/
00:46:17 creating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/var/
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/LICENSE.txt
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/backup.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/blitz/mail-senders.example
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/blitz/mail-server.example
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/build.properties
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/env.bat
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/env.sh
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/hibernate.properties
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/ice.config
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/logback-cli.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/logback-indexing-cli.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/logback-indexing.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/logback.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/mime.types
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/node1.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/node2.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/omero.properties
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/profiles/psql
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/rollover.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/Windows.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/error/maintainance.html
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/grid/README
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/grid/default.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/grid/templates.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/grid/windefault.xml
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/ice.config
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/internal.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/master.cfg
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/templates/robot.template
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/etc/testdropbox.config
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/history.rst
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/OMEZarrReader.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/activation.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aggdesigner-algorithm.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aircompressor.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/annotations.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/antlr.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aopalliance.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/avatica-core.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/avatica-metrics.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aws-java-sdk-core.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aws-java-sdk-kms.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/aws-java-sdk-s3.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/base.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-all.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-anim.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-awt-util.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-bridge.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-codec.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-constants.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-css.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-dom.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-ext.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-extension.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-gui-util.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-gvt.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-i18n.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-parser.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-rasterizer-ext.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-rasterizer.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-script.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-slideshow.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-squiggle-ext.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-squiggle.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-svg-dom.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-svgbrowser.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-svggen.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-svgpp.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-svgrasterizer.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-swing.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-transcoder.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-ttf2svg.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-util.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/batik-xml.jar
00:46:17 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/lib/client/btm.jar
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00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/psql-header.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/schema.sql
00:46:19 inflating: OMERO.server-5.6.3-500-b7d7be90f8-ice36/sql/psql/OMERO5.4__0/views.sql
00:46:19 + rm -f OMERO.server-5.6.3-500-b7d7be90f8-ice36.zip
00:46:19 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-500-b7d7be90f8-ice36 /home/omero/workspace/OMERO-server/OMERO.server
00:46:19 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:19 ++ deactivate nondestructive
00:46:19 ++ '[' -n '' ']'
00:46:19 ++ '[' -n '' ']'
00:46:19 ++ '[' -n /bin/bash -o -n '' ']'
00:46:19 ++ hash -r
00:46:19 ++ '[' -n '' ']'
00:46:19 ++ unset VIRTUAL_ENV
00:46:19 ++ '[' '!' nondestructive = nondestructive ']'
00:46:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:19 ++ export VIRTUAL_ENV
00:46:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:19 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:19 ++ export PATH
00:46:19 ++ '[' -n '' ']'
00:46:19 ++ '[' -z '' ']'
00:46:19 ++ _OLD_VIRTUAL_PS1=
00:46:19 ++ PS1='(.venv3) '
00:46:19 ++ export PS1
00:46:19 ++ '[' -n /bin/bash -o -n '' ']'
00:46:19 ++ hash -r
00:46:19 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
00:46:20 Collecting zeroc-ice==3.6.5
00:46:20 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:46:22 Installing collected packages: zeroc-ice
00:46:23 Successfully installed zeroc-ice-3.6.5
00:46:23 + pip install -U pip future
00:46:23 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
00:46:23 Collecting pip
00:46:23 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
00:46:23 Collecting future
00:46:23 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:46:24 Installing collected packages: pip, future
00:46:24 Attempting uninstall: pip
00:46:24 Found existing installation: pip 21.2.3
00:46:24 Uninstalling pip-21.2.3:
00:46:24 Successfully uninstalled pip-21.2.3
00:46:25 Successfully installed future-1.0.0 pip-24.2
00:46:25 + pip install markdown
00:46:26 Collecting markdown
00:46:26 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
00:46:26 Collecting importlib-metadata>=4.4 (from markdown)
00:46:26 Using cached importlib_metadata-8.4.0-py3-none-any.whl.metadata (4.7 kB)
00:46:26 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
00:46:26 Using cached zipp-3.20.1-py3-none-any.whl.metadata (3.7 kB)
00:46:26 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
00:46:26 Using cached importlib_metadata-8.4.0-py3-none-any.whl (26 kB)
00:46:26 Using cached zipp-3.20.1-py3-none-any.whl (9.0 kB)
00:46:26 Installing collected packages: zipp, importlib-metadata, markdown
00:46:26 Successfully installed importlib-metadata-8.4.0 markdown-3.7 zipp-3.20.1
00:46:26 + pip install reportlab
00:46:27 Collecting reportlab
00:46:27 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
00:46:27 Collecting pillow>=9.0.0 (from reportlab)
00:46:27 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
00:46:27 Collecting chardet (from reportlab)
00:46:27 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
00:46:27 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
00:46:27 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
00:46:27 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
00:46:27 Installing collected packages: pillow, chardet, reportlab
00:46:29 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
00:46:29 + pip install omego
00:46:29 Collecting omego
00:46:29 Using cached omego-0.7.0-py3-none-any.whl
00:46:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
00:46:29 Collecting yaclifw>=0.1.1 (from omego)
00:46:29 Using cached yaclifw-0.2.0-py3-none-any.whl
00:46:29 Collecting six (from yaclifw>=0.1.1->omego)
00:46:29 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
00:46:29 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
00:46:29 Installing collected packages: six, yaclifw, omego
00:46:30 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
00:46:30 + pip install tables
00:46:30 Collecting tables
00:46:30 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
00:46:30 Collecting numpy>=1.19.0 (from tables)
00:46:30 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
00:46:31 Collecting numexpr>=2.6.2 (from tables)
00:46:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
00:46:31 Collecting packaging (from tables)
00:46:31 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
00:46:31 Collecting py-cpuinfo (from tables)
00:46:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:31 Collecting blosc2>=2.3.0 (from tables)
00:46:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
00:46:31 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
00:46:31 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
00:46:31 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
00:46:31 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:46:31 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
00:46:31 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
00:46:31 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
00:46:31 Using cached packaging-24.1-py3-none-any.whl (53 kB)
00:46:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:46:31 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
00:46:31 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
00:46:32 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
00:46:35 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
00:46:35 + pip install jinja2
00:46:36 Collecting jinja2
00:46:36 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
00:46:36 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:36 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
00:46:36 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
00:46:36 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
00:46:36 Installing collected packages: MarkupSafe, jinja2
00:46:36 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
00:46:36 + pip install omero-py
00:46:36 Collecting omero-py
00:46:36 Using cached omero_py-5.19.4-py3-none-any.whl.metadata (6.3 kB)
00:46:36 Collecting urllib3<2 (from omero-py)
00:46:36 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:46:37 Collecting appdirs (from omero-py)
00:46:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:46:37 Collecting numpy<2 (from omero-py)
00:46:37 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
00:46:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
00:46:37 Collecting PyYAML (from omero-py)
00:46:37 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:46:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:46:37 Collecting requests (from omero-py)
00:46:37 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
00:46:37 Collecting portalocker (from omero-py)
00:46:37 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
00:46:37 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
00:46:37 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
00:46:37 Collecting idna<4,>=2.5 (from requests->omero-py)
00:46:37 Using cached idna-3.8-py3-none-any.whl.metadata (9.9 kB)
00:46:37 Collecting certifi>=2017.4.17 (from requests->omero-py)
00:46:37 Downloading certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
00:46:37 Using cached omero_py-5.19.4-py3-none-any.whl (2.8 MB)
00:46:38 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
00:46:38 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:46:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:38 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
00:46:38 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
00:46:38 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:46:38 Downloading certifi-2024.8.30-py3-none-any.whl (167 kB)
00:46:38 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
00:46:38 Using cached idna-3.8-py3-none-any.whl (66 kB)
00:46:38 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
00:46:38 Attempting uninstall: numpy
00:46:38 Found existing installation: numpy 2.0.2
00:46:38 Uninstalling numpy-2.0.2:
00:46:38 Successfully uninstalled numpy-2.0.2
00:46:43 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.8 numpy-1.26.4 omero-py-5.19.4 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
00:46:43 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:43 Collecting omero-metadata
00:46:43 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-r11b_joq/omero-metadata_d9fa39f87a8e4e1798eff11f713ae1ea
00:46:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-r11b_joq/omero-metadata_d9fa39f87a8e4e1798eff11f713ae1ea
00:46:44 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f9dc67261936bb535009147cdfd4450ae93be1e5
00:46:44 Installing build dependencies: started
00:46:46 Installing build dependencies: finished with status 'done'
00:46:46 Getting requirements to build wheel: started
00:46:46 Getting requirements to build wheel: finished with status 'done'
00:46:46 Preparing metadata (pyproject.toml): started
00:46:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.4)
00:46:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
00:46:46 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
00:46:47 Collecting pandas (from omero-metadata)
00:46:47 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
00:46:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
00:46:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:47 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
00:46:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
00:46:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
00:46:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
00:46:47 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
00:46:47 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:47 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:47 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:46:47 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
00:46:47 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:46:47 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
00:46:47 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
00:46:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
00:46:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.8)
00:46:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
00:46:47 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
00:46:47 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:47 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
00:46:47 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
00:46:47 Building wheels for collected packages: omero-metadata
00:46:47 Building wheel for omero-metadata (pyproject.toml): started
00:46:47 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:47 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39188 sha256=c11bf048ae4632dc6cc87e87c4ab0e26e26ba308736d9bcf857802661a1f663b
00:46:47 Stored in directory: /tmp/pip-ephem-wheel-cache-x4ff9pcf/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
00:46:47 Successfully built omero-metadata
00:46:48 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:46:53 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
00:46:53 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:53 Collecting omero-cli-render
00:46:53 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-3jqa6z1c/omero-cli-render_1965a284be834eaeb9ac5c083bfef519
00:46:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-3jqa6z1c/omero-cli-render_1965a284be834eaeb9ac5c083bfef519
00:46:54 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:54 Switched to a new branch 'merge_ci'
00:46:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:54 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0dd6fa590bf291597dd2b1caa6b2c413bc778316
00:46:54 Installing build dependencies: started
00:46:56 Installing build dependencies: finished with status 'done'
00:46:56 Getting requirements to build wheel: started
00:46:56 Getting requirements to build wheel: finished with status 'done'
00:46:56 Preparing metadata (pyproject.toml): started
00:46:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
00:46:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.4)
00:46:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
00:46:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
00:46:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
00:46:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
00:46:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
00:46:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
00:46:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.8)
00:46:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
00:46:57 Building wheels for collected packages: omero-cli-render
00:46:57 Building wheel for omero-cli-render (pyproject.toml): started
00:46:57 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:57 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18032 sha256=fc43f7482973d823530f758f49ca3333050407bb78c5f1cf68ada545554d63cb
00:46:57 Stored in directory: /tmp/pip-ephem-wheel-cache-9t4h5sp6/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
00:46:57 Successfully built omero-cli-render
00:46:57 Installing collected packages: omero-cli-render
00:46:57 Successfully installed omero-cli-render-0.8.2.dev0
00:46:57 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:58 Collecting omero-cli-duplicate
00:46:58 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-brh0mhy5/omero-cli-duplicate_53fafbb7637147eaa492f1dcd57e58ef
00:46:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-brh0mhy5/omero-cli-duplicate_53fafbb7637147eaa492f1dcd57e58ef
00:46:58 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:59 Switched to a new branch 'merge_ci'
00:46:59 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:59 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 810fe1e49436bd984bfd3af9cae59a633c021fe1
00:46:59 Installing build dependencies: started
00:47:01 Installing build dependencies: finished with status 'done'
00:47:01 Getting requirements to build wheel: started
00:47:01 Getting requirements to build wheel: finished with status 'done'
00:47:01 Preparing metadata (pyproject.toml): started
00:47:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:01 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.4)
00:47:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
00:47:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:47:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:47:01 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
00:47:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
00:47:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
00:47:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:47:01 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
00:47:01 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
00:47:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
00:47:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.8)
00:47:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
00:47:01 Building wheels for collected packages: omero-cli-duplicate
00:47:01 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:47:02 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:47:02 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=0995bb4c0d12b3f6473ad7e2ec7df0562b8c56d5e65b2617f94f1e4089d33c15
00:47:02 Stored in directory: /tmp/pip-ephem-wheel-cache-vnis4h34/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
00:47:02 Successfully built omero-cli-duplicate
00:47:02 Installing collected packages: omero-cli-duplicate
00:47:02 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:47:02 + pip install omero-certificates
00:47:02 Collecting omero-certificates
00:47:02 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
00:47:02 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.4)
00:47:03 Collecting distro==1.8.0 (from omero-certificates)
00:47:03 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
00:47:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
00:47:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:03 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
00:47:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
00:47:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
00:47:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
00:47:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
00:47:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
00:47:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.8)
00:47:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
00:47:03 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
00:47:03 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
00:47:03 Installing collected packages: distro, omero-certificates
00:47:03 Successfully installed distro-1.8.0 omero-certificates-0.3.2
00:47:03 + for x in *.tar.gz
00:47:03 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:03 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:03 Installing build dependencies: started
00:47:06 Installing build dependencies: finished with status 'done'
00:47:06 Getting requirements to build wheel: started
00:47:06 Getting requirements to build wheel: finished with status 'done'
00:47:06 Preparing metadata (pyproject.toml): started
00:47:06 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:06 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.4)
00:47:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
00:47:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
00:47:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
00:47:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
00:47:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
00:47:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
00:47:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
00:47:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.8)
00:47:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
00:47:06 Building wheels for collected packages: omero-dropbox
00:47:06 Building wheel for omero-dropbox (pyproject.toml): started
00:47:06 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:06 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=0dd396079f3ab9a8779fc6e67245468814646d594e77b927152123bb72bc2376
00:47:07 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
00:47:07 Successfully built omero-dropbox
00:47:07 Installing collected packages: omero-dropbox
00:47:07 Successfully installed omero-dropbox-5.7.1.dev0
00:47:07 + for x in *.tar.gz
00:47:07 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:47:07 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:47:07 Installing build dependencies: started
00:47:10 Installing build dependencies: finished with status 'done'
00:47:10 Getting requirements to build wheel: started
00:47:10 Getting requirements to build wheel: finished with status 'done'
00:47:10 Preparing metadata (pyproject.toml): started
00:47:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:10 Building wheels for collected packages: omero_marshal
00:47:10 Building wheel for omero_marshal (pyproject.toml): started
00:47:11 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:11 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88029 sha256=ed3ad53dbaaaa291e81f2e0fde99f1362feb4c8081a62031f20f3e04a0c879dd
00:47:11 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
00:47:11 Successfully built omero_marshal
00:47:11 Installing collected packages: omero_marshal
00:47:11 Successfully installed omero_marshal-0.9.1.dev0
00:47:11 + for x in *.tar.gz
00:47:11 + pip install -U omero_py-5.19.5.dev0.tar.gz
00:47:12 Processing ./omero_py-5.19.5.dev0.tar.gz
00:47:12 Installing build dependencies: started
00:47:17 Installing build dependencies: finished with status 'done'
00:47:17 Getting requirements to build wheel: started
00:47:18 Getting requirements to build wheel: finished with status 'done'
00:47:18 Preparing metadata (pyproject.toml): started
00:47:18 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.20)
00:47:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.4.4)
00:47:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.0.0)
00:47:18 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (1.26.4)
00:47:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (10.4.0)
00:47:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (6.0.2)
00:47:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (3.6.5)
00:47:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.32.3)
00:47:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.5.dev0) (2.10.1)
00:47:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.3.2)
00:47:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (3.8)
00:47:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.5.dev0) (2024.8.30)
00:47:18 Building wheels for collected packages: omero-py
00:47:18 Building wheel for omero-py (pyproject.toml): started
00:47:19 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:19 Created wheel for omero-py: filename=omero_py-5.19.5.dev0-py3-none-any.whl size=2782856 sha256=4b861706b594e834569676da41198a435113456320d51ba829be4563bc94958f
00:47:19 Stored in directory: /home/omero/.cache/pip/wheels/f8/22/3c/b4269ea2035cdd4c3f15d9990f88c807cd4a53e7b729c42a16
00:47:19 Successfully built omero-py
00:47:19 Installing collected packages: omero-py
00:47:19 Attempting uninstall: omero-py
00:47:19 Found existing installation: omero-py 5.19.4
00:47:19 Uninstalling omero-py-5.19.4:
00:47:20 Successfully uninstalled omero-py-5.19.4
00:47:22 Successfully installed omero-py-5.19.5.dev0
00:47:23 + for x in *.tar.gz
00:47:23 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
00:47:23 Processing ./omero_scripts-5.8.4.dev0.tar.gz
00:47:23 Installing build dependencies: started
00:47:25 Installing build dependencies: finished with status 'done'
00:47:25 Getting requirements to build wheel: started
00:47:25 Getting requirements to build wheel: finished with status 'done'
00:47:25 Preparing metadata (pyproject.toml): started
00:47:26 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:26 Building wheels for collected packages: omero-scripts
00:47:26 Building wheel for omero-scripts (pyproject.toml): started
00:47:26 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:47:26 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116558 sha256=10027262f45fa825df77ad0af8cfe414a022c49845c53a1e5964d22425d3ad2e
00:47:26 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
00:47:26 Successfully built omero-scripts
00:47:26 Installing collected packages: omero-scripts
00:47:26 Successfully installed omero-scripts-5.8.4.dev0
00:47:26 + for x in *.tar.gz
00:47:26 + pip install -U omero_web-5.27.2.dev0.tar.gz
00:47:27 Processing ./omero_web-5.27.2.dev0.tar.gz
00:47:27 Installing build dependencies: started
00:47:29 Installing build dependencies: finished with status 'done'
00:47:29 Getting requirements to build wheel: started
00:47:30 Getting requirements to build wheel: finished with status 'done'
00:47:30 Preparing metadata (pyproject.toml): started
00:47:30 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:30 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (5.19.5.dev0)
00:47:30 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.2.dev0)
00:47:30 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
00:47:31 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.2.dev0)
00:47:31 Using cached Django-4.2.15-py3-none-any.whl.metadata (4.1 kB)
00:47:31 Collecting django-pipeline==2.1.0 (from omero-web==5.27.2.dev0)
00:47:31 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
00:47:31 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.2.dev0)
00:47:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:47:31 Collecting django-csp (from omero-web==5.27.2.dev0)
00:47:31 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
00:47:31 Collecting whitenoise>=5.3.0 (from omero-web==5.27.2.dev0)
00:47:31 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
00:47:31 Collecting gunicorn>=19.3 (from omero-web==5.27.2.dev0)
00:47:31 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:47:31 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (0.9.1.dev0)
00:47:31 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (10.4.0)
00:47:31 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (2024.1)
00:47:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (2.10.1)
00:47:31 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.2.dev0) (24.1)
00:47:31 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.2.dev0)
00:47:31 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
00:47:31 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.2.dev0)
00:47:31 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
00:47:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (1.26.20)
00:47:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (1.4.4)
00:47:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (1.0.0)
00:47:31 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (1.26.4)
00:47:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (6.0.2)
00:47:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (3.6.5)
00:47:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.2.dev0) (2.32.3)
00:47:31 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.2.dev0)
00:47:31 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
00:47:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.2.dev0) (3.3.2)
00:47:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.2.dev0) (3.8)
00:47:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.2.dev0) (2024.8.30)
00:47:32 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:47:32 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
00:47:32 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
00:47:32 Using cached Django-4.2.15-py3-none-any.whl (8.0 MB)
00:47:32 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:47:32 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
00:47:32 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
00:47:32 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
00:47:32 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
00:47:32 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
00:47:32 Building wheels for collected packages: omero-web
00:47:32 Building wheel for omero-web (pyproject.toml): started
00:47:33 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:47:33 Created wheel for omero-web: filename=omero_web-5.27.2.dev0-py3-none-any.whl size=2766596 sha256=1accb7630a82ec1a4f37ba9db0b6ddfda47c0482bd6269fae0e821733ff008f6
00:47:33 Stored in directory: /home/omero/.cache/pip/wheels/53/93/5a/c866f999be09594020559a403f4e4c537245520a409e5e11b1
00:47:34 Successfully built omero-web
00:47:34 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
00:47:37 Successfully installed Django-4.2.15 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.2.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
00:47:37 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:37 --2024-08-31 00:47:37-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:37 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ...
00:47:37 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:47:37 HTTP request sent, awaiting response... 200 OK
00:47:38 Length: 95606 (93K) [text/plain]
00:47:38 Saving to: ‘Figure_To_Pdf.py’
00:47:38
00:47:38 0K .......... .......... .......... .......... .......... 53% 3.56M 0s
00:47:38 50K .......... .......... .......... .......... ... 100% 4.37M=0.02s
00:47:38
00:47:38 2024-08-31 00:47:38 (3.89 MB/s) - ‘Figure_To_Pdf.py’ saved [95606/95606]
00:47:38
00:47:38 + chmod 755 Figure_To_Pdf.py
00:47:38 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:47:38 + omero config set omero.db.name OMERO-server
00:47:40 + omero config set omero.db.host pg
00:47:42 + omero config set omero.db.user postgres
00:47:44 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:46 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:49 + omero config set omero.db.poolsize 25
00:47:52 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:55 + omero config set omero.security.trustStorePassword changeit
00:47:58 + omero config set omero.mail.config true
00:48:01 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:48:04 + omero config set omero.mail.host smtp.dundee.ac.uk
00:48:07 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:48:10 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:48:13 + omero certificates
00:48:15 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
00:48:15 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:48:15 + '[' false = true ']'
00:48:15 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:48:15 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:48:15 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:48:15 2024-08-31 00:48:15,800 [ omego.db] DEBUG dbcommand => upgrade
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG dbhost => localhost
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG dbname => OMERO-server
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG dbpass => omero
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG dbuser => omero
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG rootpass => omero
00:48:15 2024-08-31 00:48:15,801 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:48:15 2024-08-31 00:48:15,801 [omego.extern] INFO Executing : omero version
00:48:17 OMERO.py version:
00:48:17 OMERO.server version:
00:48:17 5.6.3-500-b7d7be90f8-ice36
00:48:17 5.19.5.dev0
00:48:18 2024-08-31 00:48:18,245 [omego.extern] INFO Completed [2.444 s]
00:48:18 2024-08-31 00:48:18,246 [omego.extern] DEBUG Using omero CLI from omero
00:48:18 2024-08-31 00:48:18,246 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:48:18 2024-08-31 00:48:18,246 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:18 2024-08-31 00:48:18,246 [omego.extern] INFO Executing : omero config get --show-password
00:48:20 2024-08-31 00:48:20,652 [omego.extern] INFO Completed [2.406 s]
00:48:20 2024-08-31 00:48:20,652 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:20 2024-08-31 00:48:20,653 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:48:20 2024-08-31 00:48:20,833 [omego.extern] INFO Completed [0.180 s]
00:48:20 2024-08-31 00:48:20,834 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
00:48:20 2024-08-31 00:48:20,834 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
00:48:20
00:48:20 2024-08-31 00:48:20,834 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:20 2024-08-31 00:48:20,834 [omego.extern] INFO Executing : omero config get --show-password
00:48:23 2024-08-31 00:48:23,037 [omego.extern] INFO Completed [2.203 s]
00:48:23 2024-08-31 00:48:23,037 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:23 2024-08-31 00:48:23,037 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:48:23 2024-08-31 00:48:23,053 [omego.extern] INFO Completed [0.015 s]
00:48:23 2024-08-31 00:48:23,053 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.2") at port "5432".\n'
00:48:23 2024-08-31 00:48:23,053 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:23 2024-08-31 00:48:23,053 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:23 2024-08-31 00:48:23,053 [omego.extern] INFO Executing : omero config get --show-password
00:48:25 2024-08-31 00:48:25,220 [omego.extern] INFO Completed [2.166 s]
00:48:25 2024-08-31 00:48:25,220 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:25 2024-08-31 00:48:25,220 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:25 2024-08-31 00:48:25,261 [omego.extern] INFO Completed [0.041 s]
00:48:25 2024-08-31 00:48:25,262 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:25 2024-08-31 00:48:25,262 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:25 2024-08-31 00:48:25,264 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:25 + export LANG=en_US.UTF-8
00:48:25 + LANG=en_US.UTF-8
00:48:25 + export LANGUAGE=en_US:en
00:48:25 + LANGUAGE=en_US:en
00:48:25 + export LC_ALL=en_US.UTF-8
00:48:25 + LC_ALL=en_US.UTF-8
00:48:25 + BUILD_ID=DONT_KILL_ME
00:48:25 + omero admin start
00:48:47 No descriptor given. Using etc/grid/default.xml
00:49:08 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:49:08 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:49:08 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:49:08 Waiting on startup. Use CTRL-C to exit
00:49:09 + omero admin waitup
00:49:10 Waiting on startup. Use CTRL-C to exit
00:49:11 + omero admin diagnostics
00:49:12
00:49:12 ================================================================================
00:49:12 OMERO Diagnostics (admin)
00:49:12 ================================================================================
00:49:12
00:49:12 Commands: java -version 11.0.22 (/usr/bin/java)
00:49:13 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:49:13 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:49:13 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:49:13 Commands: psql --version 16.2 (/usr/bin/psql)
00:49:13 Commands: openssl version 3.0.71 (/usr/bin/openssl)
00:49:13
00:49:13 Component: OMERO.py 5.19.5.dev0
00:49:13 Component: OMERO.server 5.6.3-500-b7d7be90f8-ice36
00:49:13
00:49:13 Server: icegridnode running
00:49:13 Server: Blitz-0 active (pid = 59258, enabled)
00:49:13 Server: Indexer-0 active (pid = 59280, enabled)
00:49:13 Server: OMERO.Glacier2 active (pid = 59307, enabled)
00:49:13 Server: OMERO.IceStorm active (pid = 59292, enabled)
00:49:13 Server: Processor-0 activating (enabled)
00:49:13 Server: Tables-0 activating (enabled)
00:49:13
00:49:13 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:49:13 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
00:49:13 Log files: DropBox.log n/a
00:49:13 Log files: FileServer.log n/a
00:49:13 Log files: Indexer-0.log 2.6 KB
00:49:13 Log files: MonitorServer.log n/a
00:49:13 Log files: Processor-0.log 592 B
00:49:13 Log files: Tables-0.log 841 B
00:49:13 Log files: TestDropBox.log n/a
00:49:13 Log files: master.err 180 B
00:49:13 Log files: master.out 30.1 KB
00:49:13 Log files: Total size 0.06 MB
00:49:13
00:49:13
00:49:13 Environment:OMERO_HOME=(unset)
00:49:13 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:49:13 Environment:OMERO_NODE=(unset)
00:49:13 Environment:OMERO_MASTER=(unset)
00:49:13 Environment:OMERO_USERDIR=(unset)
00:49:13 Environment:OMERO_TMPDIR=(unset)
00:49:13 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:13 Environment:PYTHONPATH=(unset)
00:49:13 Environment:ICE_HOME=/opt/ice-3.6.5
00:49:13 Environment:LD_LIBRARY_PATH=(unset)
00:49:13 Environment:DYLD_LIBRARY_PATH=(unset)
00:49:13
00:49:13 OMERO SSL port:4064
00:49:13 OMERO TCP port:4063
00:49:13 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:49:13 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:49:13
00:49:13 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:49:13 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:49:13 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:49:13 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:49:13
00:49:13 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 31 August 2024 ae0750cf3a55f12d1de25f8c3340cbe667f337bb
00:49:13 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 31 August 2024 ae0750cf3a55f12d1de25f8c3340cbe667f337bb
00:49:13 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 31 August 2024 ae0750cf3a55f12d1de25f8c3340cbe667f337bb
00:49:13 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 31 August 2024 6b17d9d3c35a5a06c1eecf33a2903c70464feadc
00:49:13 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
00:49:13 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
00:49:13 Jar: lib/server/omero-gateway.jar jar 5.9.3-SNAPSHOT
00:49:13 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
00:49:13 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
00:49:13 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
00:49:13 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
00:49:13 + deactivate
00:49:13 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:49:13 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:13 + export PATH
00:49:13 + unset _OLD_VIRTUAL_PATH
00:49:13 + '[' -n '' ']'
00:49:13 + '[' -n /bin/bash -o -n '' ']'
00:49:13 + hash -r
00:49:13 + '[' -n '' ']'
00:49:13 + unset VIRTUAL_ENV
00:49:13 + '[' '!' '' = nondestructive ']'
00:49:13 + unset -f deactivate
00:49:13 Finished: SUCCESS
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