14:20:33 Started by upstream project "Trigger" build number 17
14:20:33 originally caused by:
14:20:33 Started by user devspace
14:20:33 Restarted from build #16, stage OMERO Jars
14:20:33 Running as SYSTEM
14:20:33 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
14:20:33 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14114845724813123165.sh
14:20:33 + source /home/settings.env
14:20:33 ++ OMERO_DB_HOST=pg
14:20:33 ++ OMERO_DB_USER=postgres
14:20:33 ++ OMERO_DB_PASS=
14:20:33 ++ OMERO_ROOT_PASS=omero
14:20:33 ++ OMERO_DATA_DIR=/OMERO
14:20:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:20:33 + OMERO_DB_NAME=OMERO-server
14:20:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
14:20:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:20:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:20:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
14:20:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
14:20:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
14:20:33 ++ deactivate nondestructive
14:20:33 ++ '[' -n '' ']'
14:20:33 ++ '[' -n '' ']'
14:20:33 ++ '[' -n /bin/bash -o -n '' ']'
14:20:33 ++ hash -r
14:20:33 ++ '[' -n '' ']'
14:20:33 ++ unset VIRTUAL_ENV
14:20:33 ++ '[' '!' nondestructive = nondestructive ']'
14:20:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
14:20:33 ++ export VIRTUAL_ENV
14:20:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:20:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:20:33 ++ export PATH
14:20:33 ++ '[' -n '' ']'
14:20:33 ++ '[' -z '' ']'
14:20:33 ++ _OLD_VIRTUAL_PS1=
14:20:33 ++ PS1='(.venv3) '
14:20:33 ++ export PS1
14:20:33 ++ '[' -n /bin/bash -o -n '' ']'
14:20:33 ++ hash -r
14:20:33 + omero admin stop
14:20:34 Waiting on shutdown. Use CTRL-C to exit
14:20:34 .+ sleep 5
14:20:49 + deactivate
14:20:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
14:20:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:20:49 + export PATH
14:20:49 + unset _OLD_VIRTUAL_PATH
14:20:49 + '[' -n '' ']'
14:20:49 + '[' -n /bin/bash -o -n '' ']'
14:20:49 + hash -r
14:20:49 + '[' -n '' ']'
14:20:49 + unset VIRTUAL_ENV
14:20:49 + '[' '!' '' = nondestructive ']'
14:20:49 + unset -f deactivate
14:20:49 + rm -rf /home/omero/workspace/OMERO-server/.venv3
14:20:50 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
14:20:52 + '[' false = true ']'
14:20:52 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
14:20:52 Skipping PURGE_DATA:CleanDbAndRepo
14:20:52 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
14:20:55 Copied 1 artifact from "OMERO-build" build number 14
14:20:55 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 14
14:20:55 Copied 2 artifacts from "OMERO-build-build" build number 14
14:20:55 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13287430567573650668.sh
14:20:55 + source /home/settings.env
14:20:55 ++ OMERO_DB_HOST=pg
14:20:55 ++ OMERO_DB_USER=postgres
14:20:55 ++ OMERO_DB_PASS=
14:20:55 ++ OMERO_ROOT_PASS=omero
14:20:55 ++ OMERO_DATA_DIR=/OMERO
14:20:55 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:20:55 + OMERO_DB_NAME=OMERO-server
14:20:55 + OMERO_DATA_DIR=/home/omero/omero-server-data
14:20:55 + mkdir -p /home/omero/omero-server-data
14:20:55 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
14:20:55 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:20:55 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:20:55 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
14:20:55 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
14:20:55 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
14:20:55 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
14:20:55 ++ ls OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:20:55 + ZIP=OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:20:55 + '[' '!' -z '' ']'
14:20:55 + DIST=OMERO.server-5.6.3-437-54c08a8db8-ice36
14:20:55 + unzip OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:20:55 Archive: OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/blitz/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/grid/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/profiles/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/error/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/janelia/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/ncsa_paledit/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/luts/wcif/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/analysis_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/annotation_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/export_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/figure_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/import_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/scripts/omero/util_scripts/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/server/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/share/licenses/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/misc/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__1/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__10/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__11/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__2/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__3/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__4/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__5/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__6/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__7/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__8/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3A__9/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__4/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__5/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__6/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO3__7/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.1__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/t/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.3__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.4__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__1/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__2/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__3/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/
14:20:55 creating: OMERO.server-5.6.3-437-54c08a8db8-ice36/var/
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/LICENSE.txt
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/backup.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/blitz/mail-senders.example
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/blitz/mail-server.example
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/build.properties
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/env.bat
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/env.sh
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/hibernate.properties
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/ice.config
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/logback-cli.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/logback-indexing-cli.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/logback-indexing.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/logback.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/mime.types
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/node1.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/node2.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/omero.properties
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/profiles/psql
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/rollover.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/Windows.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/error/maintainance.html
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/README
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/default.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/templates.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/grid/windefault.xml
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/ice.config
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/internal.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/master.cfg
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/templates/robot.template
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/etc/testdropbox.config
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/history.rst
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/OMEZarrReader.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/activation.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aggdesigner-algorithm.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aircompressor.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/annotations.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/antlr.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aopalliance.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/apache-client.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/arns.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/auth.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/avatica-core.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/avatica-metrics.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aws-core.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aws-query-protocol.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/aws-xml-protocol.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/base.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-all.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-anim.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-awt-util.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-bridge.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-codec.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-constants.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-css.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-dom.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-ext.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-extension.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-gui-util.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-gvt.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-i18n.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-parser.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-rasterizer-ext.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-rasterizer.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-script.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-slideshow.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-squiggle-ext.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-squiggle.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-svg-dom.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-svgbrowser.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-svggen.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-svgpp.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-svgrasterizer.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-swing.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-transcoder.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-ttf2svg.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-util.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/batik-xml.jar
14:20:55 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/lib/client/btm.jar
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14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/psql-header.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/schema.sql
14:20:58 inflating: OMERO.server-5.6.3-437-54c08a8db8-ice36/sql/psql/OMERO5.4__0/views.sql
14:20:58 + rm -f OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:20:58 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-437-54c08a8db8-ice36 /home/omero/workspace/OMERO-server/OMERO.server
14:20:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
14:20:58 ++ deactivate nondestructive
14:20:58 ++ '[' -n '' ']'
14:20:58 ++ '[' -n '' ']'
14:20:58 ++ '[' -n /bin/bash -o -n '' ']'
14:20:58 ++ hash -r
14:20:58 ++ '[' -n '' ']'
14:20:58 ++ unset VIRTUAL_ENV
14:20:58 ++ '[' '!' nondestructive = nondestructive ']'
14:20:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
14:20:58 ++ export VIRTUAL_ENV
14:20:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:20:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:20:58 ++ export PATH
14:20:58 ++ '[' -n '' ']'
14:20:58 ++ '[' -z '' ']'
14:20:58 ++ _OLD_VIRTUAL_PS1=
14:20:58 ++ PS1='(.venv3) '
14:20:58 ++ export PS1
14:20:58 ++ '[' -n /bin/bash -o -n '' ']'
14:20:58 ++ hash -r
14:20:58 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
14:20:58 Collecting zeroc-ice==3.6.5
14:20:59 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
14:21:01 Installing collected packages: zeroc-ice
14:21:01 Successfully installed zeroc-ice-3.6.5
14:21:01 + pip install -U pip future
14:21:02 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
14:21:02 Collecting pip
14:21:02 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
14:21:02 Collecting future
14:21:02 Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:21:02 Installing collected packages: pip, future
14:21:02 Attempting uninstall: pip
14:21:02 Found existing installation: pip 21.2.3
14:21:02 Uninstalling pip-21.2.3:
14:21:02 Successfully uninstalled pip-21.2.3
14:21:04 Successfully installed future-1.0.0 pip-24.0
14:21:04 + pip install markdown
14:21:04 Collecting markdown
14:21:04 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
14:21:04 Collecting importlib-metadata>=4.4 (from markdown)
14:21:04 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
14:21:04 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
14:21:04 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
14:21:04 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
14:21:04 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
14:21:04 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
14:21:04 Installing collected packages: zipp, importlib-metadata, markdown
14:21:05 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
14:21:05 + pip install reportlab
14:21:05 Collecting reportlab
14:21:05 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB)
14:21:05 Collecting pillow>=9.0.0 (from reportlab)
14:21:05 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
14:21:06 Collecting chardet (from reportlab)
14:21:06 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
14:21:06 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB)
14:21:06 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
14:21:06 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
14:21:06 Installing collected packages: pillow, chardet, reportlab
14:21:07 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0
14:21:07 + pip install omego
14:21:07 Collecting omego
14:21:07 Using cached omego-0.7.0-py3-none-any.whl
14:21:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
14:21:07 Collecting yaclifw>=0.1.1 (from omego)
14:21:07 Using cached yaclifw-0.2.0-py3-none-any.whl
14:21:07 Collecting six (from yaclifw>=0.1.1->omego)
14:21:07 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
14:21:07 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
14:21:08 Installing collected packages: six, yaclifw, omego
14:21:08 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
14:21:08 + pip install tables
14:21:08 Collecting tables
14:21:08 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
14:21:08 Collecting numpy>=1.19.0 (from tables)
14:21:08 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
14:21:09 Collecting numexpr>=2.6.2 (from tables)
14:21:09 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
14:21:09 Collecting packaging (from tables)
14:21:09 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
14:21:09 Collecting py-cpuinfo (from tables)
14:21:09 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
14:21:09 Collecting blosc2>=2.3.0 (from tables)
14:21:09 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
14:21:09 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
14:21:09 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
14:21:09 Collecting msgpack (from blosc2>=2.3.0->tables)
14:21:09 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
14:21:09 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
14:21:09 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
14:21:09 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
14:21:09 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
14:21:09 Using cached packaging-24.0-py3-none-any.whl (53 kB)
14:21:09 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
14:21:09 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
14:21:09 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
14:21:09 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
14:21:12 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
14:21:12 + pip install jinja2
14:21:13 Collecting jinja2
14:21:13 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
14:21:13 Collecting MarkupSafe>=2.0 (from jinja2)
14:21:13 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
14:21:13 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
14:21:13 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
14:21:13 Installing collected packages: MarkupSafe, jinja2
14:21:13 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
14:21:13 + pip install omero-py
14:21:14 Collecting omero-py
14:21:14 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB)
14:21:14 Collecting urllib3<2 (from omero-py)
14:21:14 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
14:21:14 Collecting appdirs (from omero-py)
14:21:14 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
14:21:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
14:21:14 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
14:21:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0)
14:21:14 Collecting PyYAML (from omero-py)
14:21:14 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
14:21:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
14:21:14 Collecting requests (from omero-py)
14:21:14 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
14:21:14 Collecting portalocker (from omero-py)
14:21:14 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
14:21:14 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
14:21:14 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
14:21:14 Collecting idna<4,>=2.5 (from requests->omero-py)
14:21:14 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
14:21:14 Collecting certifi>=2017.4.17 (from requests->omero-py)
14:21:14 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
14:21:14 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB)
14:21:14 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
14:21:14 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:21:14 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
14:21:14 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
14:21:14 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
14:21:14 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
14:21:14 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
14:21:14 Using cached idna-3.6-py3-none-any.whl (61 kB)
14:21:14 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
14:21:17 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
14:21:17 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
14:21:17 Collecting omero-metadata
14:21:17 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-b5o690ei/omero-metadata_ab1d9b0f08c24a9bac1ce6d4a78253b8
14:21:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-b5o690ei/omero-metadata_ab1d9b0f08c24a9bac1ce6d4a78253b8
14:21:18 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 7bdf868be50de63f3349103618a3c4b7f06f667b
14:21:18 Installing build dependencies: started
14:21:20 Installing build dependencies: finished with status 'done'
14:21:20 Getting requirements to build wheel: started
14:21:20 Getting requirements to build wheel: finished with status 'done'
14:21:20 Installing backend dependencies: started
14:21:21 Installing backend dependencies: finished with status 'done'
14:21:21 Preparing metadata (pyproject.toml): started
14:21:21 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.1)
14:21:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
14:21:21 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
14:21:21 Collecting pandas (from omero-metadata)
14:21:21 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
14:21:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
14:21:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
14:21:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
14:21:21 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
14:21:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0)
14:21:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
14:21:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
14:21:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
14:21:21 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
14:21:21 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
14:21:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
14:21:21 Collecting pytz>=2020.1 (from pandas->omero-metadata)
14:21:21 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
14:21:21 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
14:21:21 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
14:21:21 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
14:21:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
14:21:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6)
14:21:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
14:21:21 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
14:21:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
14:21:21 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
14:21:21 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
14:21:22 Building wheels for collected packages: omero-metadata
14:21:22 Building wheel for omero-metadata (pyproject.toml): started
14:21:22 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
14:21:22 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=09ac3147579c61619b2d58c8a5c9e8c405c4b74682a823f6b0f40856a7172b1f
14:21:22 Stored in directory: /tmp/pip-ephem-wheel-cache-5tqytztv/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
14:21:22 Successfully built omero-metadata
14:21:22 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
14:21:27 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
14:21:27 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
14:21:27 Collecting omero-cli-render
14:21:27 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-mojkiavw/omero-cli-render_68f21f1c830a4ccc8b7820f0db1c56fb
14:21:27 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-mojkiavw/omero-cli-render_68f21f1c830a4ccc8b7820f0db1c56fb
14:21:28 Running command git checkout -b merge_ci --track origin/merge_ci
14:21:29 Switched to a new branch 'merge_ci'
14:21:29 branch 'merge_ci' set up to track 'origin/merge_ci'.
14:21:29 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c0d477efc8c6f9c4965ac2ffba16a2983b680be1
14:21:29 Installing build dependencies: started
14:21:30 Installing build dependencies: finished with status 'done'
14:21:30 Getting requirements to build wheel: started
14:21:31 Getting requirements to build wheel: finished with status 'done'
14:21:31 Installing backend dependencies: started
14:21:32 Installing backend dependencies: finished with status 'done'
14:21:32 Preparing metadata (pyproject.toml): started
14:21:32 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:32 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
14:21:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.1)
14:21:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
14:21:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
14:21:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
14:21:32 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
14:21:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0)
14:21:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
14:21:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
14:21:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
14:21:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
14:21:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6)
14:21:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
14:21:32 Building wheels for collected packages: omero-cli-render
14:21:32 Building wheel for omero-cli-render (pyproject.toml): started
14:21:32 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
14:21:32 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=181e17b4a8af01ee81f6579868a8538a0d9af155999d4538920880533536de83
14:21:32 Stored in directory: /tmp/pip-ephem-wheel-cache-c1gkq5yz/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
14:21:32 Successfully built omero-cli-render
14:21:32 Installing collected packages: omero-cli-render
14:21:32 Successfully installed omero-cli-render-0.8.1.dev0
14:21:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
14:21:33 Collecting omero-cli-duplicate
14:21:33 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-sx8huedx/omero-cli-duplicate_a6b41b3bc2f14f36b2701a83bfe9e39f
14:21:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-sx8huedx/omero-cli-duplicate_a6b41b3bc2f14f36b2701a83bfe9e39f
14:21:34 Running command git checkout -b merge_ci --track origin/merge_ci
14:21:34 Switched to a new branch 'merge_ci'
14:21:34 branch 'merge_ci' set up to track 'origin/merge_ci'.
14:21:34 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit b17c07044eac5c80c9d5c866338a6af3838400d8
14:21:34 Installing build dependencies: started
14:21:36 Installing build dependencies: finished with status 'done'
14:21:36 Getting requirements to build wheel: started
14:21:36 Getting requirements to build wheel: finished with status 'done'
14:21:36 Installing backend dependencies: started
14:21:37 Installing backend dependencies: finished with status 'done'
14:21:37 Preparing metadata (pyproject.toml): started
14:21:37 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:37 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.1)
14:21:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
14:21:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
14:21:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
14:21:37 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
14:21:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0)
14:21:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
14:21:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
14:21:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
14:21:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
14:21:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
14:21:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6)
14:21:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
14:21:37 Building wheels for collected packages: omero-cli-duplicate
14:21:37 Building wheel for omero-cli-duplicate (pyproject.toml): started
14:21:37 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
14:21:37 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=f4c894bf1e2814fd00eb110b43eb29b7a817f98aee1030e2a680614d7486d2ba
14:21:37 Stored in directory: /tmp/pip-ephem-wheel-cache-69_cnaef/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
14:21:37 Successfully built omero-cli-duplicate
14:21:38 Installing collected packages: omero-cli-duplicate
14:21:38 Successfully installed omero-cli-duplicate-0.4.1.dev0
14:21:38 + pip install omero-certificates
14:21:38 Collecting omero-certificates
14:21:38 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
14:21:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.1)
14:21:38 Collecting distro==1.8.0 (from omero-certificates)
14:21:38 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
14:21:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
14:21:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
14:21:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
14:21:38 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
14:21:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0)
14:21:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
14:21:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
14:21:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
14:21:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
14:21:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
14:21:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6)
14:21:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
14:21:38 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
14:21:38 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
14:21:39 Installing collected packages: distro, omero-certificates
14:21:39 Successfully installed distro-1.8.0 omero-certificates-0.3.2
14:21:39 + for x in *.tar.gz
14:21:39 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz
14:21:39 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
14:21:39 Installing build dependencies: started
14:21:41 Installing build dependencies: finished with status 'done'
14:21:41 Getting requirements to build wheel: started
14:21:41 Getting requirements to build wheel: finished with status 'done'
14:21:41 Installing backend dependencies: started
14:21:42 Installing backend dependencies: finished with status 'done'
14:21:42 Preparing metadata (pyproject.toml): started
14:21:42 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:42 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.1)
14:21:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
14:21:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
14:21:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
14:21:42 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
14:21:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0)
14:21:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
14:21:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
14:21:42 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
14:21:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
14:21:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
14:21:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6)
14:21:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
14:21:42 Building wheels for collected packages: omero-dropbox
14:21:42 Building wheel for omero-dropbox (pyproject.toml): started
14:21:42 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
14:21:42 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=557043931a4620c2cd4c978c5c0c18278bb0cfec6d9a01a9db8863ff23722ce9
14:21:42 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1
14:21:42 Successfully built omero-dropbox
14:21:42 Installing collected packages: omero-dropbox
14:21:42 Successfully installed omero-dropbox-5.6.3.dev0
14:21:43 + for x in *.tar.gz
14:21:43 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
14:21:43 Processing ./omero_marshal-0.9.1.dev0.tar.gz
14:21:43 Installing build dependencies: started
14:21:45 Installing build dependencies: finished with status 'done'
14:21:45 Getting requirements to build wheel: started
14:21:45 Getting requirements to build wheel: finished with status 'done'
14:21:45 Installing backend dependencies: started
14:21:46 Installing backend dependencies: finished with status 'done'
14:21:46 Preparing metadata (pyproject.toml): started
14:21:46 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:46 Building wheels for collected packages: omero_marshal
14:21:46 Building wheel for omero_marshal (pyproject.toml): started
14:21:46 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
14:21:46 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=dd7a65f3cea7c08f8ab82846c2c9ab52fa35133078aba4d65179a1b49a55616d
14:21:46 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
14:21:46 Successfully built omero_marshal
14:21:46 Installing collected packages: omero_marshal
14:21:46 Successfully installed omero_marshal-0.9.1.dev0
14:21:46 + for x in *.tar.gz
14:21:46 + pip install -U omero-py-5.19.2.dev0.tar.gz
14:21:47 Processing ./omero-py-5.19.2.dev0.tar.gz
14:21:47 Installing build dependencies: started
14:21:49 Installing build dependencies: finished with status 'done'
14:21:49 Getting requirements to build wheel: started
14:21:49 Getting requirements to build wheel: finished with status 'done'
14:21:49 Installing backend dependencies: started
14:21:50 Installing backend dependencies: finished with status 'done'
14:21:50 Preparing metadata (pyproject.toml): started
14:21:50 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18)
14:21:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4)
14:21:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0)
14:21:50 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4)
14:21:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0)
14:21:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1)
14:21:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5)
14:21:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0)
14:21:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2)
14:21:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2)
14:21:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6)
14:21:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2)
14:21:50 Building wheels for collected packages: omero-py
14:21:50 Building wheel for omero-py (pyproject.toml): started
14:21:51 Building wheel for omero-py (pyproject.toml): finished with status 'done'
14:21:51 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2781847 sha256=5e6948b1536d1d5fca3a0fd3dcc942b198641c330c849b5d8e4ab5db7ec9b9d3
14:21:51 Stored in directory: /home/omero/.cache/pip/wheels/9c/89/be/2493ce5a19b07550997c567708af9d7056cfee1f4f39ac699d
14:21:51 Successfully built omero-py
14:21:51 Installing collected packages: omero-py
14:21:51 Attempting uninstall: omero-py
14:21:51 Found existing installation: omero-py 5.19.1
14:21:51 Uninstalling omero-py-5.19.1:
14:21:52 Successfully uninstalled omero-py-5.19.1
14:21:55 Successfully installed omero-py-5.19.2.dev0
14:21:55 + for x in *.tar.gz
14:21:55 + pip install -U omero-scripts-5.8.1.dev0.tar.gz
14:21:55 Processing ./omero-scripts-5.8.1.dev0.tar.gz
14:21:55 Installing build dependencies: started
14:21:57 Installing build dependencies: finished with status 'done'
14:21:57 Getting requirements to build wheel: started
14:21:57 Getting requirements to build wheel: finished with status 'done'
14:21:57 Installing backend dependencies: started
14:21:58 Installing backend dependencies: finished with status 'done'
14:21:58 Preparing metadata (pyproject.toml): started
14:21:58 Preparing metadata (pyproject.toml): finished with status 'done'
14:21:58 Building wheels for collected packages: omero-scripts
14:21:58 Building wheel for omero-scripts (pyproject.toml): started
14:21:58 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
14:21:58 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=194c7b125d12f814d5d650957e090721c4df0a9c5c9a5ce6c49adda74b3445ad
14:21:58 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf
14:21:58 Successfully built omero-scripts
14:21:59 Installing collected packages: omero-scripts
14:21:59 Successfully installed omero-scripts-5.8.1.dev0
14:21:59 + for x in *.tar.gz
14:21:59 + pip install -U omero-web-5.25.1.dev0.tar.gz
14:21:59 Processing ./omero-web-5.25.1.dev0.tar.gz
14:21:59 Installing build dependencies: started
14:22:01 Installing build dependencies: finished with status 'done'
14:22:01 Getting requirements to build wheel: started
14:22:01 Getting requirements to build wheel: finished with status 'done'
14:22:01 Installing backend dependencies: started
14:22:02 Installing backend dependencies: finished with status 'done'
14:22:02 Preparing metadata (pyproject.toml): started
14:22:02 Preparing metadata (pyproject.toml): finished with status 'done'
14:22:02 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0)
14:22:02 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
14:22:02 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
14:22:03 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
14:22:03 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
14:22:03 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
14:22:03 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
14:22:03 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
14:22:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
14:22:03 Collecting django-csp (from omero-web==5.25.1.dev0)
14:22:03 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
14:22:03 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
14:22:03 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
14:22:03 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
14:22:03 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
14:22:03 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
14:22:03 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
14:22:03 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
14:22:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
14:22:03 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
14:22:03 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
14:22:03 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
14:22:03 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
14:22:03 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
14:22:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
14:22:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
14:22:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
14:22:03 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
14:22:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
14:22:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
14:22:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
14:22:03 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
14:22:03 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
14:22:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
14:22:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
14:22:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
14:22:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
14:22:03 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
14:22:03 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
14:22:03 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
14:22:03 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
14:22:03 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
14:22:03 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
14:22:03 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
14:22:03 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
14:22:03 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
14:22:03 Building wheels for collected packages: omero-web
14:22:03 Building wheel for omero-web (pyproject.toml): started
14:22:04 Building wheel for omero-web (pyproject.toml): finished with status 'done'
14:22:04 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=a0251ecb69b59485b2b790b7f6c9fc2cab73f542efec8da94b132b9ba341c281
14:22:04 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a
14:22:04 Successfully built omero-web
14:22:05 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
14:22:07 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
14:22:07 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
14:22:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
14:22:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
14:22:07 --2024-03-27 14:22:07-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
14:22:08 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ...
14:22:08 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
14:22:08 HTTP request sent, awaiting response... 200 OK
14:22:08 Length: 94614 (92K) [text/plain]
14:22:08 Saving to: ‘Figure_To_Pdf.py’
14:22:08
14:22:08 0K .......... .......... .......... .......... .......... 54% 1.57M 0s
14:22:08 50K .......... .......... .......... .......... .. 100% 7.39M=0.04s
14:22:08
14:22:08 2024-03-27 14:22:08 (2.46 MB/s) - ‘Figure_To_Pdf.py’ saved [94614/94614]
14:22:08
14:22:08 + chmod 755 Figure_To_Pdf.py
14:22:08 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
14:22:08 + omero config set omero.db.name OMERO-server
14:22:09 + omero config set omero.db.host pg
14:22:11 + omero config set omero.db.user postgres
14:22:12 + omero config set omero.data.dir /home/omero/omero-server-data
14:22:13 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
14:22:14 + omero config set omero.db.poolsize 25
14:22:16 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
14:22:17 + omero config set omero.security.trustStorePassword changeit
14:22:18 + omero config set omero.mail.config true
14:22:19 + omero config set omero.mail.from qa@openmicroscopy.org.uk
14:22:21 + omero config set omero.mail.host smtp.dundee.ac.uk
14:22:22 + omero certificates
14:22:23 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
14:22:23 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
14:22:23 + '[' false = true ']'
14:22:23 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
14:22:23 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
14:22:23 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG dbcommand => upgrade
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG dbhost => localhost
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG dbname => OMERO-server
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG dbpass => omero
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG dbuser => omero
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG rootpass => omero
14:22:24 2024-03-27 14:22:24,064 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
14:22:24 2024-03-27 14:22:24,064 [omego.extern] INFO Executing : omero version
14:22:25 OMERO.py version:
14:22:25 OMERO.server version:
14:22:25 5.6.3-437-54c08a8db8-ice36
14:22:25 5.19.2.dev0
14:22:25 2024-03-27 14:22:25,412 [omego.extern] INFO Completed [1.348 s]
14:22:25 2024-03-27 14:22:25,413 [omego.extern] DEBUG Using omero CLI from omero
14:22:25 2024-03-27 14:22:25,413 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
14:22:25 2024-03-27 14:22:25,413 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:22:25 2024-03-27 14:22:25,413 [omego.extern] INFO Executing : omero config get --show-password
14:22:26 2024-03-27 14:22:26,667 [omego.extern] INFO Completed [1.254 s]
14:22:26 2024-03-27 14:22:26,667 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:22:26 2024-03-27 14:22:26,667 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
14:22:26 2024-03-27 14:22:26,673 [omego.extern] INFO Completed [0.005 s]
14:22:26 2024-03-27 14:22:26,673 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
14:22:26 2024-03-27 14:22:26,673 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
14:22:26
14:22:26 2024-03-27 14:22:26,673 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:22:26 2024-03-27 14:22:26,673 [omego.extern] INFO Executing : omero config get --show-password
14:22:27 2024-03-27 14:22:27,927 [omego.extern] INFO Completed [1.253 s]
14:22:27 2024-03-27 14:22:27,927 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:22:27 2024-03-27 14:22:27,927 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
14:22:27 2024-03-27 14:22:27,936 [omego.extern] INFO Completed [0.009 s]
14:22:27 2024-03-27 14:22:27,936 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
14:22:27 2024-03-27 14:22:27,936 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
14:22:27 2024-03-27 14:22:27,936 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:22:27 2024-03-27 14:22:27,936 [omego.extern] INFO Executing : omero config get --show-password
14:22:29 2024-03-27 14:22:29,229 [omego.extern] INFO Completed [1.292 s]
14:22:29 2024-03-27 14:22:29,229 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:22:29 2024-03-27 14:22:29,229 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
14:22:29 2024-03-27 14:22:29,240 [omego.extern] INFO Completed [0.010 s]
14:22:29 2024-03-27 14:22:29,240 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
14:22:29 2024-03-27 14:22:29,240 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
14:22:29 2024-03-27 14:22:29,242 [ omego.db] INFO Database is already at OMERO5.4__0
14:22:29 + export LANG=en_US.UTF-8
14:22:29 + LANG=en_US.UTF-8
14:22:29 + export LANGUAGE=en_US:en
14:22:29 + LANGUAGE=en_US:en
14:22:29 + export LC_ALL=en_US.UTF-8
14:22:29 + LC_ALL=en_US.UTF-8
14:22:29 + BUILD_ID=DONT_KILL_ME
14:22:29 + omero admin start
14:22:38 No descriptor given. Using etc/grid/default.xml
14:22:45 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
14:22:45 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
14:22:45 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
14:22:45 Waiting on startup. Use CTRL-C to exit
14:22:45 + omero admin waitup
14:22:46 Waiting on startup. Use CTRL-C to exit
14:22:47 + omero admin diagnostics
14:22:48
14:22:48 ================================================================================
14:22:48 OMERO Diagnostics (admin)
14:22:48 ================================================================================
14:22:48
14:22:48 Commands: java -version 11.0.22 (/usr/bin/java)
14:22:48 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
14:22:48 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
14:22:48 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
14:22:48 Commands: psql --version 16.2 (/usr/bin/psql)
14:22:48 Commands: openssl version 3.0.71 (/usr/bin/openssl)
14:22:48
14:22:48 Component: OMERO.py 5.19.2.dev0
14:22:48 Component: OMERO.server 5.6.3-437-54c08a8db8-ice36
14:22:48
14:22:48 Server: icegridnode running
14:22:48 Server: Blitz-0 active (pid = 18055, enabled)
14:22:48 Server: DropBox activating (enabled)
14:22:48 Server: FileServer active (pid = 18119, enabled)
14:22:48 Server: Indexer-0 activating (enabled)
14:22:48 Server: MonitorServer active (pid = 18091, enabled)
14:22:48 Server: OMERO.Glacier2 active (pid = 18106, enabled)
14:22:48 Server: OMERO.IceStorm active (pid = 18118, enabled)
14:22:48 Server: PixelData-0 activating (enabled)
14:22:48 Server: Processor-0 activating (enabled)
14:22:48 Server: Tables-0 activating (enabled)
14:22:48 Server: TestDropBox inactive (enabled)
14:22:48
14:22:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
14:22:48 Log files: Blitz-0.log 21.3 KB errors=0 warnings=1
14:22:48 Log files: DropBox.log 121 B
14:22:48 Log files: FileServer.log 114 B
14:22:48 Log files: Indexer-0.log 114 B
14:22:48 Log files: MonitorServer.log 117 B
14:22:48 Log files: PixelData-0.log 114 B
14:22:48 Log files: Processor-0.log 281 B
14:22:48 Log files: Tables-0.log 281 B
14:22:48 Log files: TestDropBox.log n/a
14:22:48 Log files: master.err 869 B
14:22:48 Log files: master.out 41.5 KB
14:22:48 Log files: Total size 0.06 MB
14:22:48
14:22:48
14:22:48 Environment:OMERO_HOME=(unset)
14:22:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:22:48 Environment:OMERO_NODE=(unset)
14:22:48 Environment:OMERO_MASTER=(unset)
14:22:48 Environment:OMERO_USERDIR=(unset)
14:22:48 Environment:OMERO_TMPDIR=(unset)
14:22:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:22:48 Environment:PYTHONPATH=(unset)
14:22:48 Environment:ICE_HOME=/opt/ice-3.6.5
14:22:48 Environment:LD_LIBRARY_PATH=(unset)
14:22:48 Environment:DYLD_LIBRARY_PATH=(unset)
14:22:48
14:22:48 OMERO SSL port:4064
14:22:48 OMERO TCP port:4063
14:22:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
14:22:48 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
14:22:48
14:22:48 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
14:22:48 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
14:22:48 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
14:22:48 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
14:22:48
14:22:48 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 27 March 2024 6db045849120ce622ca77e80fca6eb6607aad9f7
14:22:48 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 27 March 2024 6db045849120ce622ca77e80fca6eb6607aad9f7
14:22:48 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 27 March 2024 6db045849120ce622ca77e80fca6eb6607aad9f7
14:22:48 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.2-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/ome-common.jar OME Common Java 6.0.22-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/ome-jai.jar OME JAI 0.1.3-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.3-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/ome-poi.jar OME POI 5.3.9-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/ome-xml.jar OME XML library 6.3.5-SNAPSHOT 27 March 2024 d1d6fe9c4d52211c55aeb3ba4679be1980dfffa3
14:22:48 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT
14:22:48 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT
14:22:48 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT
14:22:48 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT
14:22:48 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT
14:22:48 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT
14:22:48 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT
14:22:48 + deactivate
14:22:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
14:22:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:22:48 + export PATH
14:22:48 + unset _OLD_VIRTUAL_PATH
14:22:48 + '[' -n '' ']'
14:22:48 + '[' -n /bin/bash -o -n '' ']'
14:22:48 + hash -r
14:22:48 + '[' -n '' ']'
14:22:48 + unset VIRTUAL_ENV
14:22:48 + '[' '!' '' = nondestructive ']'
14:22:48 + unset -f deactivate
14:22:48 Finished: SUCCESS
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