09:52:05 Started by user devspace
09:52:05 Running as SYSTEM
09:52:05 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:52:05 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8747312772235331035.sh
09:52:05 + source /home/settings.env
09:52:05 ++ OMERO_DB_HOST=pg
09:52:05 ++ OMERO_DB_USER=postgres
09:52:05 ++ OMERO_DB_PASS=
09:52:05 ++ OMERO_ROOT_PASS=omero
09:52:05 ++ OMERO_DATA_DIR=/OMERO
09:52:05 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:52:05 + OMERO_DB_NAME=OMERO-server
09:52:05 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:52:05 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:52:05 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:52:05 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:52:05 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:52:05 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:52:05 ++ deactivate nondestructive
09:52:05 ++ '[' -n '' ']'
09:52:05 ++ '[' -n '' ']'
09:52:05 ++ '[' -n /bin/bash -o -n '' ']'
09:52:05 ++ hash -r
09:52:05 ++ '[' -n '' ']'
09:52:05 ++ unset VIRTUAL_ENV
09:52:05 ++ '[' '!' nondestructive = nondestructive ']'
09:52:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:52:05 ++ export VIRTUAL_ENV
09:52:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:52:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:52:05 ++ export PATH
09:52:05 ++ '[' -n '' ']'
09:52:05 ++ '[' -z '' ']'
09:52:05 ++ _OLD_VIRTUAL_PS1=
09:52:05 ++ PS1='(.venv3) '
09:52:05 ++ export PS1
09:52:05 ++ '[' -n /bin/bash -o -n '' ']'
09:52:05 ++ hash -r
09:52:05 + omero admin stop
09:52:26 Waiting on shutdown. Use CTRL-C to exit
09:52:26 .+ sleep 5
09:52:42 + deactivate
09:52:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:52:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:52:42 + export PATH
09:52:42 + unset _OLD_VIRTUAL_PATH
09:52:42 + '[' -n '' ']'
09:52:42 + '[' -n /bin/bash -o -n '' ']'
09:52:42 + hash -r
09:52:42 + '[' -n '' ']'
09:52:42 + unset VIRTUAL_ENV
09:52:42 + '[' '!' '' = nondestructive ']'
09:52:42 + unset -f deactivate
09:52:42 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:52:43 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
09:52:48 + '[' false = true ']'
09:52:48 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:52:48 Skipping PURGE_DATA:CleanDbAndRepo
09:52:49 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:52:51 Copied 1 artifact from "OMERO-build" build number 238
09:52:51 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 234
09:52:51 Copied 2 artifacts from "OMERO-build-build" build number 245
09:52:51 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5840917110727457915.sh
09:52:51 + source /home/settings.env
09:52:51 ++ OMERO_DB_HOST=pg
09:52:51 ++ OMERO_DB_USER=postgres
09:52:51 ++ OMERO_DB_PASS=
09:52:51 ++ OMERO_ROOT_PASS=omero
09:52:51 ++ OMERO_DATA_DIR=/OMERO
09:52:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:52:51 + OMERO_DB_NAME=OMERO-server
09:52:51 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:52:51 + mkdir -p /home/omero/omero-server-data
09:52:51 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:52:51 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:52:51 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:52:51 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:52:51 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:52:51 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:52:51 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:52:51 ++ ls OMERO.server-5.6.3-520-1fef8f9fda-ice36.zip
09:52:51 + ZIP=OMERO.server-5.6.3-520-1fef8f9fda-ice36.zip
09:52:51 + '[' '!' -z '' ']'
09:52:51 + DIST=OMERO.server-5.6.3-520-1fef8f9fda-ice36
09:52:51 + unzip OMERO.server-5.6.3-520-1fef8f9fda-ice36.zip
09:52:51 Archive: OMERO.server-5.6.3-520-1fef8f9fda-ice36.zip
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/blitz/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/grid/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/profiles/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/error/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/grid/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/janelia/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/matplotlib/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/ncsa_paledit/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/seaborn/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/luts/wcif/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/analysis_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/annotation_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/export_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/figure_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/import_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/scripts/omero/util_scripts/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/server/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/share/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/share/licenses/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/misc/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__1/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__10/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__11/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__2/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__3/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__4/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__5/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__6/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__7/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__8/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3A__9/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3__4/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3__5/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3__6/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO3__7/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4.1__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4.2__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4.2__0/t/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4.3__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4.4__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO4__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.0__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.1__1/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.2__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__1/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__2/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__3/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/
09:52:51 creating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/var/
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/LICENSE.txt
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/backup.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/blitz/mail-senders.example
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/blitz/mail-server.example
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/build.properties
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/env.bat
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/env.sh
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/hibernate.properties
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/ice.config
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/logback-cli.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/logback-indexing-cli.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/logback-indexing.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/logback.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/mime.types
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/node1.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/node2.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/omero.properties
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/profiles/psql
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/rollover.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/Windows.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/error/maintainance.html
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/grid/README
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/grid/default.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/grid/templates.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/grid/windefault.xml
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/ice.config
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/internal.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/master.cfg
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/templates/robot.template
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/etc/testdropbox.config
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/history.rst
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/OMEZarrReader.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/activation.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aggdesigner-algorithm.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aircompressor.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/annotations.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/antlr.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aopalliance.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/avatica-core.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/avatica-metrics.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aws-java-sdk-core.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aws-java-sdk-kms.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/aws-java-sdk-s3.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/base.jar
09:52:51 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-all.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-anim.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-awt-util.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-bridge.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-codec.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-constants.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-css.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-dom.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-ext.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-extension.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-gui-util.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-gvt.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-i18n.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-parser.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-rasterizer-ext.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-rasterizer.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-script.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-slideshow.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-squiggle-ext.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-squiggle.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-svg-dom.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-svgbrowser.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-svggen.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-svgpp.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-svgrasterizer.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-swing.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-transcoder.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-ttf2svg.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-util.jar
09:52:52 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/lib/client/batik-xml.jar
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09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/psql-header.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/schema.sql
09:52:54 inflating: OMERO.server-5.6.3-520-1fef8f9fda-ice36/sql/psql/OMERO5.4__0/views.sql
09:52:54 + rm -f OMERO.server-5.6.3-520-1fef8f9fda-ice36.zip
09:52:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-520-1fef8f9fda-ice36 /home/omero/workspace/OMERO-server/OMERO.server
09:52:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:52:54 ++ deactivate nondestructive
09:52:54 ++ '[' -n '' ']'
09:52:54 ++ '[' -n '' ']'
09:52:54 ++ '[' -n /bin/bash -o -n '' ']'
09:52:54 ++ hash -r
09:52:54 ++ '[' -n '' ']'
09:52:54 ++ unset VIRTUAL_ENV
09:52:54 ++ '[' '!' nondestructive = nondestructive ']'
09:52:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:52:54 ++ export VIRTUAL_ENV
09:52:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:52:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:52:54 ++ export PATH
09:52:54 ++ '[' -n '' ']'
09:52:54 ++ '[' -z '' ']'
09:52:54 ++ _OLD_VIRTUAL_PS1=
09:52:54 ++ PS1='(.venv3) '
09:52:54 ++ export PS1
09:52:54 ++ '[' -n /bin/bash -o -n '' ']'
09:52:54 ++ hash -r
09:52:54 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
09:52:54 Collecting zeroc-ice==3.6.5
09:52:55 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
09:52:57 Installing collected packages: zeroc-ice
09:52:57 Successfully installed zeroc-ice-3.6.5
09:52:58 + pip install -U pip future
09:52:58 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
09:52:58 Collecting pip
09:52:58 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
09:52:59 Collecting future
09:52:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:52:59 Installing collected packages: pip, future
09:52:59 Attempting uninstall: pip
09:52:59 Found existing installation: pip 21.2.3
09:52:59 Uninstalling pip-21.2.3:
09:52:59 Successfully uninstalled pip-21.2.3
09:53:00 Successfully installed future-1.0.0 pip-24.3.1
09:53:00 + pip install markdown
09:53:01 Collecting markdown
09:53:01 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
09:53:01 Collecting importlib-metadata>=4.4 (from markdown)
09:53:01 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
09:53:01 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
09:53:01 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
09:53:01 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
09:53:01 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
09:53:01 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
09:53:01 Installing collected packages: zipp, importlib-metadata, markdown
09:53:02 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.21.0
09:53:02 + pip install reportlab
09:53:03 Collecting reportlab
09:53:03 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB)
09:53:03 Collecting pillow>=9.0.0 (from reportlab)
09:53:03 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
09:53:03 Collecting chardet (from reportlab)
09:53:03 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
09:53:03 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB)
09:53:04 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB)
09:53:04 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
09:53:04 Installing collected packages: pillow, chardet, reportlab
09:53:05 Successfully installed chardet-5.2.0 pillow-11.0.0 reportlab-4.2.5
09:53:05 + pip install omego
09:53:06 Collecting omego
09:53:06 Using cached omego-0.7.0-py3-none-any.whl
09:53:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
09:53:06 Collecting yaclifw>=0.1.1 (from omego)
09:53:06 Using cached yaclifw-0.2.0-py3-none-any.whl
09:53:06 Collecting six (from yaclifw>=0.1.1->omego)
09:53:06 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
09:53:06 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
09:53:06 Installing collected packages: six, yaclifw, omego
09:53:06 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
09:53:06 + pip install tables
09:53:07 Collecting tables
09:53:07 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
09:53:07 Collecting numpy>=1.19.0 (from tables)
09:53:07 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
09:53:08 Collecting numexpr>=2.6.2 (from tables)
09:53:08 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
09:53:08 Collecting packaging (from tables)
09:53:08 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
09:53:08 Collecting py-cpuinfo (from tables)
09:53:08 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:53:08 Collecting blosc2>=2.3.0 (from tables)
09:53:08 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
09:53:09 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
09:53:09 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
09:53:09 Collecting msgpack (from blosc2>=2.3.0->tables)
09:53:09 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
09:53:09 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:53:09 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
09:53:09 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
09:53:09 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
09:53:10 Using cached packaging-24.2-py3-none-any.whl (65 kB)
09:53:10 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:53:10 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
09:53:10 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
09:53:10 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
09:53:13 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
09:53:14 + pip install jinja2
09:53:14 Collecting jinja2
09:53:14 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
09:53:14 Collecting MarkupSafe>=2.0 (from jinja2)
09:53:14 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
09:53:14 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
09:53:15 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
09:53:15 Installing collected packages: MarkupSafe, jinja2
09:53:15 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.4
09:53:15 + pip install omero-py
09:53:15 Collecting omero-py
09:53:15 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
09:53:16 Collecting urllib3<2 (from omero-py)
09:53:16 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
09:53:16 Collecting appdirs (from omero-py)
09:53:16 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:53:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
09:53:16 Collecting numpy<2 (from omero-py)
09:53:16 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
09:53:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.0.0)
09:53:16 Collecting PyYAML (from omero-py)
09:53:16 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
09:53:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
09:53:16 Collecting requests (from omero-py)
09:53:16 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
09:53:16 Collecting portalocker (from omero-py)
09:53:16 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
09:53:17 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
09:53:17 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
09:53:17 Collecting idna<4,>=2.5 (from requests->omero-py)
09:53:17 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
09:53:17 Collecting certifi>=2017.4.17 (from requests->omero-py)
09:53:17 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
09:53:17 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
09:53:18 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
09:53:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:53:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:53:18 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
09:53:18 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
09:53:18 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
09:53:18 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
09:53:18 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
09:53:18 Using cached idna-3.10-py3-none-any.whl (70 kB)
09:53:18 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
09:53:19 Attempting uninstall: numpy
09:53:19 Found existing installation: numpy 2.0.2
09:53:19 Uninstalling numpy-2.0.2:
09:53:19 Successfully uninstalled numpy-2.0.2
09:53:23 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.4.0 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
09:53:23 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:53:23 Collecting omero-metadata
09:53:23 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0nq6f60m/omero-metadata_eb2665c6dab2448bb59c8c04fc1a5574
09:53:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0nq6f60m/omero-metadata_eb2665c6dab2448bb59c8c04fc1a5574
09:53:26 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9a8daa0488b12181f896a045604f447ce77d1210
09:53:26 Installing build dependencies: started
09:53:31 Installing build dependencies: finished with status 'done'
09:53:31 Getting requirements to build wheel: started
09:53:31 Getting requirements to build wheel: finished with status 'done'
09:53:31 Preparing metadata (pyproject.toml): started
09:53:32 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
09:53:32 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
09:53:32 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
09:53:32 Collecting pandas (from omero-metadata)
09:53:32 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
09:53:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
09:53:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:53:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:53:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
09:53:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.0.0)
09:53:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:53:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
09:53:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
09:53:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
09:53:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:53:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:53:33 Collecting pytz>=2020.1 (from pandas->omero-metadata)
09:53:33 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
09:53:33 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
09:53:33 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
09:53:33 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
09:53:33 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.0)
09:53:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
09:53:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
09:53:33 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
09:53:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:53:33 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
09:53:33 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB)
09:53:33 Building wheels for collected packages: omero-metadata
09:53:33 Building wheel for omero-metadata (pyproject.toml): started
09:53:33 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:53:33 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39190 sha256=aaf21898dd9e922e954d7bfdcb0843f53d07fd9ccdaeb2f743a375a599177961
09:53:33 Stored in directory: /tmp/pip-ephem-wheel-cache-zl5f5n1d/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
09:53:33 Successfully built omero-metadata
09:53:33 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
09:53:38 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2
09:53:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:53:38 Collecting omero-cli-render
09:53:38 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-lwb11bs8/omero-cli-render_270f0fb8e28a45e0a9fc1b171b8de7a4
09:53:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-lwb11bs8/omero-cli-render_270f0fb8e28a45e0a9fc1b171b8de7a4
09:53:39 Running command git checkout -b merge_ci --track origin/merge_ci
09:53:40 Switched to a new branch 'merge_ci'
09:53:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:53:40 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit b71525963e1681237289dda2f29b9775a6a1027b
09:53:40 Installing build dependencies: started
09:53:41 Installing build dependencies: finished with status 'done'
09:53:41 Getting requirements to build wheel: started
09:53:41 Getting requirements to build wheel: finished with status 'done'
09:53:41 Preparing metadata (pyproject.toml): started
09:53:42 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
09:53:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
09:53:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
09:53:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:53:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:53:42 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
09:53:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.0.0)
09:53:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:53:42 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
09:53:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
09:53:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.0)
09:53:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
09:53:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
09:53:42 Building wheels for collected packages: omero-cli-render
09:53:42 Building wheel for omero-cli-render (pyproject.toml): started
09:53:42 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:53:42 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=17981 sha256=bcd5ed17c9a501a492c0cf143b0d2a4d95052e9c03180132ad48ef5c797f4e62
09:53:42 Stored in directory: /tmp/pip-ephem-wheel-cache-p5l3ejdg/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
09:53:42 Successfully built omero-cli-render
09:53:42 Installing collected packages: omero-cli-render
09:53:42 Successfully installed omero-cli-render-0.8.2.dev0
09:53:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:53:42 Collecting omero-cli-duplicate
09:53:42 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-gn3ys7u1/omero-cli-duplicate_98203c586c6e40ebacb175f4c29ba1f4
09:53:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-gn3ys7u1/omero-cli-duplicate_98203c586c6e40ebacb175f4c29ba1f4
09:53:43 Running command git checkout -b merge_ci --track origin/merge_ci
09:53:43 Switched to a new branch 'merge_ci'
09:53:43 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:53:43 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit a6f954900b8289acbf57611bc68ca98ad69037dd
09:53:44 Installing build dependencies: started
09:53:45 Installing build dependencies: finished with status 'done'
09:53:45 Getting requirements to build wheel: started
09:53:45 Getting requirements to build wheel: finished with status 'done'
09:53:45 Preparing metadata (pyproject.toml): started
09:53:46 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:46 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
09:53:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
09:53:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:53:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:53:46 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
09:53:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0)
09:53:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
09:53:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:53:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
09:53:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
09:53:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.0)
09:53:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
09:53:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
09:53:46 Building wheels for collected packages: omero-cli-duplicate
09:53:46 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:53:46 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:53:46 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=d020128d5a7f4dd454e0f9f8f30459ec643078e1bc57a93aa9fa2ede22296b02
09:53:46 Stored in directory: /tmp/pip-ephem-wheel-cache-qt6ta6r9/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
09:53:46 Successfully built omero-cli-duplicate
09:53:46 Installing collected packages: omero-cli-duplicate
09:53:46 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:53:46 + pip install omero-certificates
09:53:47 Collecting omero-certificates
09:53:47 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
09:53:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
09:53:47 Collecting distro==1.8.0 (from omero-certificates)
09:53:47 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
09:53:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
09:53:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:53:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:53:47 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
09:53:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0)
09:53:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
09:53:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:53:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
09:53:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
09:53:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.0)
09:53:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
09:53:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
09:53:47 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
09:53:47 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
09:53:48 Installing collected packages: distro, omero-certificates
09:53:48 Successfully installed distro-1.8.0 omero-certificates-0.3.2
09:53:48 + for x in *.tar.gz
09:53:48 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:53:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:53:48 Installing build dependencies: started
09:53:50 Installing build dependencies: finished with status 'done'
09:53:50 Getting requirements to build wheel: started
09:53:50 Getting requirements to build wheel: finished with status 'done'
09:53:50 Preparing metadata (pyproject.toml): started
09:53:50 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:50 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
09:53:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
09:53:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:53:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:53:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
09:53:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0)
09:53:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
09:53:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:53:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
09:53:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
09:53:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.0)
09:53:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
09:53:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
09:53:50 Building wheels for collected packages: omero-dropbox
09:53:50 Building wheel for omero-dropbox (pyproject.toml): started
09:53:50 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:53:50 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=4239a5441a70e9bd5b66faffe9aac520a6b44d79ae7f7b81a2fd5722795ce499
09:53:50 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
09:53:50 Successfully built omero-dropbox
09:53:50 Installing collected packages: omero-dropbox
09:53:50 Successfully installed omero-dropbox-5.7.1.dev0
09:53:51 + for x in *.tar.gz
09:53:51 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
09:53:51 Processing ./omero_marshal-0.9.1.dev0.tar.gz
09:53:51 Installing build dependencies: started
09:53:53 Installing build dependencies: finished with status 'done'
09:53:53 Getting requirements to build wheel: started
09:53:53 Getting requirements to build wheel: finished with status 'done'
09:53:53 Preparing metadata (pyproject.toml): started
09:53:53 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:53 Building wheels for collected packages: omero_marshal
09:53:53 Building wheel for omero_marshal (pyproject.toml): started
09:53:53 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:53:53 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88029 sha256=4092eab1aba2b22aa38aebe231b42bbfc5c3ad54fc355c60e930bc7682a62adf
09:53:53 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
09:53:54 Successfully built omero_marshal
09:53:54 Installing collected packages: omero_marshal
09:53:54 Successfully installed omero_marshal-0.9.1.dev0
09:53:54 + for x in *.tar.gz
09:53:54 + pip install -U omero_py-5.19.6.dev0.tar.gz
09:53:54 Processing ./omero_py-5.19.6.dev0.tar.gz
09:53:55 Installing build dependencies: started
09:53:56 Installing build dependencies: finished with status 'done'
09:53:56 Getting requirements to build wheel: started
09:53:57 Getting requirements to build wheel: finished with status 'done'
09:53:57 Preparing metadata (pyproject.toml): started
09:53:57 Preparing metadata (pyproject.toml): finished with status 'done'
09:53:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
09:53:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
09:53:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
09:53:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
09:53:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0)
09:53:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
09:53:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
09:53:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
09:53:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
09:53:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.0)
09:53:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
09:53:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
09:53:57 Building wheels for collected packages: omero-py
09:53:57 Building wheel for omero-py (pyproject.toml): started
09:53:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:53:58 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783246 sha256=a7038e8636e370ebb55d64ee7289a0745dd212b14d6a93bd085e9543ba284ff2
09:53:58 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
09:53:58 Successfully built omero-py
09:53:58 Installing collected packages: omero-py
09:53:58 Attempting uninstall: omero-py
09:53:58 Found existing installation: omero-py 5.19.5
09:53:58 Uninstalling omero-py-5.19.5:
09:53:59 Successfully uninstalled omero-py-5.19.5
09:54:01 Successfully installed omero-py-5.19.6.dev0
09:54:01 + for x in *.tar.gz
09:54:01 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
09:54:01 Processing ./omero_scripts-5.8.4.dev0.tar.gz
09:54:01 Installing build dependencies: started
09:54:03 Installing build dependencies: finished with status 'done'
09:54:03 Getting requirements to build wheel: started
09:54:03 Getting requirements to build wheel: finished with status 'done'
09:54:03 Preparing metadata (pyproject.toml): started
09:54:03 Preparing metadata (pyproject.toml): finished with status 'done'
09:54:03 Building wheels for collected packages: omero-scripts
09:54:03 Building wheel for omero-scripts (pyproject.toml): started
09:54:03 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:54:03 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=52e471125408a5ec355657c5d4c0b57c8598b26bbcc8c1cdb3abaeb2a3aa8674
09:54:03 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
09:54:03 Successfully built omero-scripts
09:54:04 Installing collected packages: omero-scripts
09:54:04 Successfully installed omero-scripts-5.8.4.dev0
09:54:04 + for x in *.tar.gz
09:54:04 + pip install -U omero_web-5.27.3.dev0.tar.gz
09:54:04 Processing ./omero_web-5.27.3.dev0.tar.gz
09:54:04 Installing build dependencies: started
09:54:06 Installing build dependencies: finished with status 'done'
09:54:06 Getting requirements to build wheel: started
09:54:06 Getting requirements to build wheel: finished with status 'done'
09:54:06 Preparing metadata (pyproject.toml): started
09:54:07 Preparing metadata (pyproject.toml): finished with status 'done'
09:54:07 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
09:54:07 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
09:54:07 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
09:54:07 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
09:54:07 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
09:54:08 Collecting django-pipeline (from omero-web==5.27.3.dev0)
09:54:08 Using cached django_pipeline-3.1.0-py3-none-any.whl.metadata (13 kB)
09:54:08 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
09:54:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:54:08 Collecting django-csp (from omero-web==5.27.3.dev0)
09:54:08 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
09:54:08 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
09:54:08 Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB)
09:54:08 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
09:54:08 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
09:54:08 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
09:54:08 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (11.0.0)
09:54:08 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
09:54:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
09:54:08 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.2)
09:54:08 Collecting importlib-resources (from omero-web==5.27.3.dev0)
09:54:08 Using cached importlib_resources-6.4.5-py3-none-any.whl.metadata (4.0 kB)
09:54:08 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
09:54:08 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
09:54:08 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
09:54:08 Using cached sqlparse-0.5.2-py3-none-any.whl.metadata (3.9 kB)
09:54:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
09:54:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
09:54:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
09:54:08 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
09:54:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
09:54:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
09:54:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
09:54:08 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.27.3.dev0) (3.21.0)
09:54:08 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
09:54:08 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
09:54:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.4.0)
09:54:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
09:54:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
09:54:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:54:08 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
09:54:08 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
09:54:09 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
09:54:09 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB)
09:54:09 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
09:54:09 Using cached django_pipeline-3.1.0-py3-none-any.whl (40 kB)
09:54:09 Using cached importlib_resources-6.4.5-py3-none-any.whl (36 kB)
09:54:09 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
09:54:09 Using cached sqlparse-0.5.2-py3-none-any.whl (44 kB)
09:54:09 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
09:54:09 Building wheels for collected packages: omero-web
09:54:09 Building wheel for omero-web (pyproject.toml): started
09:54:11 Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:54:11 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2768198 sha256=c75c32e35176c0dc4a1d13cc31ad4ac872ec91188c62471074789b9a3e2dca9e
09:54:11 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
09:54:11 Successfully built omero-web
09:54:11 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
09:54:13 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-3.1.0 gunicorn-23.0.0 importlib-resources-6.4.5 omero-web-5.27.3.dev0 sqlparse-0.5.2 typing-extensions-4.12.2 whitenoise-6.8.2
09:54:14 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:54:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:54:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:54:15 --2024-11-18 09:54:15-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:54:16 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ...
09:54:16 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
09:54:16 HTTP request sent, awaiting response... 200 OK
09:54:16 Length: 102160 (100K) [text/plain]
09:54:16 Saving to: ‘Figure_To_Pdf.py’
09:54:16
09:54:16 0K .......... .......... .......... .......... .......... 50% 2.01M 0s
09:54:16 50K .......... .......... .......... .......... ......... 100% 15.6M=0.03s
09:54:16
09:54:16 2024-11-18 09:54:16 (3.56 MB/s) - ‘Figure_To_Pdf.py’ saved [102160/102160]
09:54:16
09:54:16 + chmod 755 Figure_To_Pdf.py
09:54:16 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:54:16 + omero config set omero.db.name OMERO-server
09:54:17 + omero config set omero.db.host pg
09:54:18 + omero config set omero.db.user postgres
09:54:20 + omero config set omero.data.dir /home/omero/omero-server-data
09:54:21 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:54:22 + omero config set omero.db.poolsize 25
09:54:23 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:54:24 + omero config set omero.security.trustStorePassword changeit
09:54:26 + omero config set omero.mail.config true
09:54:27 + omero config set omero.mail.from qa@openmicroscopy.org.uk
09:54:28 + omero config set omero.mail.host smtp.dundee.ac.uk
09:54:29 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:54:31 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:54:32 + omero certificates
09:54:33 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
09:54:33 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:54:33 + '[' false = true ']'
09:54:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:54:33 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:54:33 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG dbcommand => upgrade
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG dbhost => localhost
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG dbname => OMERO-server
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG dbpass => omero
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG dbuser => omero
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG rootpass => omero
09:54:34 2024-11-18 09:54:34,034 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:54:34 2024-11-18 09:54:34,034 [omego.extern] INFO Executing : omero version
09:54:35 OMERO.py version:
09:54:35 OMERO.server version:
09:54:35 5.6.3-520-1fef8f9fda-ice36
09:54:35 5.19.6.dev0
09:54:35 2024-11-18 09:54:35,329 [omego.extern] INFO Completed [1.295 s]
09:54:35 2024-11-18 09:54:35,330 [omego.extern] DEBUG Using omero CLI from omero
09:54:35 2024-11-18 09:54:35,330 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:54:35 2024-11-18 09:54:35,330 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:54:35 2024-11-18 09:54:35,330 [omego.extern] INFO Executing : omero config get --show-password
09:54:36 2024-11-18 09:54:36,538 [omego.extern] INFO Completed [1.208 s]
09:54:36 2024-11-18 09:54:36,538 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:54:36 2024-11-18 09:54:36,539 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:54:37 2024-11-18 09:54:37,446 [omego.extern] INFO Completed [0.907 s]
09:54:37 2024-11-18 09:54:37,446 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
09:54:37 2024-11-18 09:54:37,446 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
09:54:37
09:54:37 2024-11-18 09:54:37,446 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:54:37 2024-11-18 09:54:37,446 [omego.extern] INFO Executing : omero config get --show-password
09:54:38 2024-11-18 09:54:38,655 [omego.extern] INFO Completed [1.209 s]
09:54:38 2024-11-18 09:54:38,656 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:54:38 2024-11-18 09:54:38,656 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:54:38 2024-11-18 09:54:38,782 [omego.extern] INFO Completed [0.126 s]
09:54:38 2024-11-18 09:54:38,782 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
09:54:38 2024-11-18 09:54:38,782 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:54:38 2024-11-18 09:54:38,782 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:54:38 2024-11-18 09:54:38,782 [omego.extern] INFO Executing : omero config get --show-password
09:54:39 2024-11-18 09:54:39,987 [omego.extern] INFO Completed [1.205 s]
09:54:39 2024-11-18 09:54:39,987 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:54:39 2024-11-18 09:54:39,988 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:54:40 2024-11-18 09:54:40,219 [omego.extern] INFO Completed [0.231 s]
09:54:40 2024-11-18 09:54:40,219 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:54:40 2024-11-18 09:54:40,219 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
09:54:40 2024-11-18 09:54:40,220 [ omego.db] INFO Database is already at OMERO5.4__0
09:54:40 + export LANG=en_US.UTF-8
09:54:40 + LANG=en_US.UTF-8
09:54:40 + export LANGUAGE=en_US:en
09:54:40 + LANGUAGE=en_US:en
09:54:40 + export LC_ALL=en_US.UTF-8
09:54:40 + LC_ALL=en_US.UTF-8
09:54:40 + BUILD_ID=DONT_KILL_ME
09:54:40 + omero admin start
09:54:51 No descriptor given. Using etc/grid/default.xml
09:55:00 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:55:00 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:55:00 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:55:00 Waiting on startup. Use CTRL-C to exit
09:55:00 + omero admin waitup
09:55:01 Waiting on startup. Use CTRL-C to exit
09:55:01 + omero admin diagnostics
09:55:03
09:55:03 ================================================================================
09:55:03 OMERO Diagnostics (admin)
09:55:03 ================================================================================
09:55:03
09:55:03 Commands: java -version 11.0.24 (/usr/bin/java)
09:55:03 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:55:03 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
09:55:03 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
09:55:03 Commands: psql --version 16.4 (/usr/bin/psql)
09:55:03 Commands: openssl version 3.0.71 (/usr/bin/openssl)
09:55:03
09:55:03 Component: OMERO.py 5.19.6.dev0
09:55:03 Component: OMERO.server 5.6.3-520-1fef8f9fda-ice36
09:55:03
09:55:03 Server: icegridnode running
09:55:03 Server: Blitz-0 active (pid = 64562, enabled)
09:55:03 Server: Indexer-0 activating (enabled)
09:55:03 Server: OMERO.Glacier2 active (pid = 64615, enabled)
09:55:03 Server: OMERO.IceStorm active (pid = 64604, enabled)
09:55:03 Server: Processor-0 activating (enabled)
09:55:03 Server: Tables-0 activating (enabled)
09:55:03
09:55:03 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:55:03 Log files: Blitz-0.log 29.5 KB errors=0 warnings=5
09:55:03 Log files: DropBox.log n/a
09:55:03 Log files: FileServer.log n/a
09:55:03 Log files: Indexer-0.log 358 B
09:55:03 Log files: MonitorServer.log n/a
09:55:03 Log files: Processor-0.log 281 B
09:55:03 Log files: Tables-0.log 281 B
09:55:03 Log files: TestDropBox.log n/a
09:55:03 Log files: master.err 180 B
09:55:03 Log files: master.out 30.1 KB
09:55:03 Log files: Total size 0.06 MB
09:55:03
09:55:03
09:55:03 Environment:OMERO_HOME=(unset)
09:55:03 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:55:03 Environment:OMERO_NODE=(unset)
09:55:03 Environment:OMERO_MASTER=(unset)
09:55:03 Environment:OMERO_USERDIR=(unset)
09:55:03 Environment:OMERO_TMPDIR=(unset)
09:55:03 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:55:03 Environment:PYTHONPATH=(unset)
09:55:03 Environment:ICE_HOME=/opt/ice-3.6.5
09:55:03 Environment:LD_LIBRARY_PATH=(unset)
09:55:03 Environment:DYLD_LIBRARY_PATH=(unset)
09:55:03
09:55:03 OMERO SSL port:4064
09:55:03 OMERO TCP port:4063
09:55:03 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
09:55:03 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
09:55:03
09:55:03 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:55:03 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:55:03 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:55:03 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:55:03
09:55:03 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 18 November 2024 8352d39f81c969bdc4b81f0d77b48a9124bbabea
09:55:03 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 18 November 2024 8352d39f81c969bdc4b81f0d77b48a9124bbabea
09:55:03 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 18 November 2024 8352d39f81c969bdc4b81f0d77b48a9124bbabea
09:55:03 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 18 November 2024 b92d54640fb630df8027b67b3746b3a85b55fc9f
09:55:03 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
09:55:03 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
09:55:03 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
09:55:03 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
09:55:03 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
09:55:03 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
09:55:03 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
09:55:03 + deactivate
09:55:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:55:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:55:03 + export PATH
09:55:03 + unset _OLD_VIRTUAL_PATH
09:55:03 + '[' -n '' ']'
09:55:03 + '[' -n /bin/bash -o -n '' ']'
09:55:03 + hash -r
09:55:03 + '[' -n '' ']'
09:55:03 + unset VIRTUAL_ENV
09:55:03 + '[' '!' '' = nondestructive ']'
09:55:03 + unset -f deactivate
09:55:03 Finished: SUCCESS
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