14:29:50 Started by user devspace
14:29:50 Running as SYSTEM
14:29:50 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
14:29:50 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7213219074493279292.sh
14:29:50 + source /home/settings.env
14:29:50 ++ OMERO_DB_HOST=pg
14:29:50 ++ OMERO_DB_USER=postgres
14:29:50 ++ OMERO_DB_PASS=
14:29:50 ++ OMERO_ROOT_PASS=omero
14:29:50 ++ OMERO_DATA_DIR=/OMERO
14:29:50 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:29:50 + OMERO_DB_NAME=OMERO-server
14:29:50 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
14:29:50 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:29:50 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:29:50 + OMERO_DATA_DIR=/home/omero/omero-server-data
14:29:50 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
14:29:50 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
14:29:50 ++ deactivate nondestructive
14:29:50 ++ '[' -n '' ']'
14:29:50 ++ '[' -n '' ']'
14:29:50 ++ hash -r
14:29:50 ++ '[' -n '' ']'
14:29:50 ++ unset VIRTUAL_ENV
14:29:50 ++ unset VIRTUAL_ENV_PROMPT
14:29:50 ++ '[' '!' nondestructive = nondestructive ']'
14:29:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
14:29:50 ++ export VIRTUAL_ENV
14:29:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:29:50 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:29:50 ++ export PATH
14:29:50 ++ '[' -n '' ']'
14:29:50 ++ '[' -z '' ']'
14:29:50 ++ _OLD_VIRTUAL_PS1=
14:29:50 ++ PS1='(.venv3) '
14:29:50 ++ export PS1
14:29:50 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
14:29:50 ++ export VIRTUAL_ENV_PROMPT
14:29:50 ++ hash -r
14:29:50 + omero admin stop
14:29:51 Waiting on shutdown. Use CTRL-C to exit
14:29:51 .+ sleep 5
14:30:06 + deactivate
14:30:06 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
14:30:06 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:30:06 + export PATH
14:30:06 + unset _OLD_VIRTUAL_PATH
14:30:06 + '[' -n '' ']'
14:30:06 + hash -r
14:30:06 + '[' -n '' ']'
14:30:06 + unset VIRTUAL_ENV
14:30:06 + unset VIRTUAL_ENV_PROMPT
14:30:06 + '[' '!' '' = nondestructive ']'
14:30:06 + unset -f deactivate
14:30:06 + rm -rf /home/omero/workspace/OMERO-server/.venv3
14:30:07 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
14:30:10 + '[' false = true ']'
14:30:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
14:30:10 Skipping PURGE_DATA:CleanDbAndRepo
14:30:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
14:30:12 Copied 1 artifact from "OMERO-build" build number 17
14:30:12 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 17
14:30:12 Copied 2 artifacts from "OMERO-build-build" build number 20
14:30:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins170339136949045988.sh
14:30:12 + source /home/settings.env
14:30:12 ++ OMERO_DB_HOST=pg
14:30:12 ++ OMERO_DB_USER=postgres
14:30:12 ++ OMERO_DB_PASS=
14:30:12 ++ OMERO_ROOT_PASS=omero
14:30:12 ++ OMERO_DATA_DIR=/OMERO
14:30:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:30:12 + OMERO_DB_NAME=OMERO-server
14:30:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
14:30:12 + mkdir -p /home/omero/omero-server-data
14:30:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
14:30:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:30:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:30:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
14:30:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
14:30:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
14:30:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
14:30:12 ++ ls OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
14:30:12 + ZIP=OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
14:30:12 + '[' '!' -z '' ']'
14:30:12 + DIST=OMERO.server-5.6.3-578-31c47ae256-ice36-b17
14:30:12 + unzip OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
14:30:12 Archive: OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/grid/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/profiles/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/error/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/janelia/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/matplotlib/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/ncsa_paledit/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/seaborn/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/wcif/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/analysis_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/annotation_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/export_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/figure_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/import_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/util_scripts/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/server/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/share/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/share/licenses/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/misc/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__1/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__10/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__11/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__2/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__3/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__4/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__5/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__6/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__7/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__8/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__9/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__4/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__5/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__6/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__7/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.1__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.2__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.2__0/t/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.3__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.4__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.0__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.1__1/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.2__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.3__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__1/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__2/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__3/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/var/
14:30:12 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/var/tmp/
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/LICENSE.txt
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/backup.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/mail-senders.example
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/mail-server.example
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/build.properties
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/env.bat
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/env.sh
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/hibernate.properties
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/ice.config
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-cli.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-indexing-cli.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-indexing.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/mime.types
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/node1.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/node2.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/omero.properties
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/profiles/psql
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/rollover.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/Windows.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/error/maintainance.html
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/README
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/default.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/templates.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/windefault.xml
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/ice.config
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/internal.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/master.cfg
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/robot.template
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/testdropbox.config
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/history.rst
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/OMEZarrReader.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/accessors-smart.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/activation.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aggdesigner-algorithm.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aircompressor.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/antlr.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aopalliance.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/apiguardian-api.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/asm.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/avatica-core.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/avatica-metrics.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-core.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-kms.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-s3.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/base.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-anim.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-awt-util.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-bridge.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-codec.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-constants.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-css.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-dom.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-ext.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-gvt.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-i18n.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-parser.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-script.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-shared-resources.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-svg-dom.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-svggen.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-transcoder.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-util.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-xml.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/btm.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/calcite-core.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/calcite-linq4j.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/cdm-core.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/checker-qual.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-beanutils.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-codec.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-collections.jar
14:30:12 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-collections4.jar
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14:30:14 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/psql-header.sql
14:30:14 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/schema.sql
14:30:14 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/views.sql
14:30:14 + rm -f OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
14:30:14 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-31c47ae256-ice36-b17 /home/omero/workspace/OMERO-server/OMERO.server
14:30:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
14:30:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
14:30:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
14:30:14 --2026-01-13 14:30:14-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
14:30:14 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
14:30:14 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
14:30:15 HTTP request sent, awaiting response... 200 OK
14:30:15 Length: 889211 (868K) [application/java-archive]
14:30:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
14:30:15
14:30:15 0K .......... .......... .......... .......... .......... 5% 31.6M 0s
14:30:15 50K .......... .......... .......... .......... .......... 11% 3.47M 0s
14:30:15 100K .......... .......... .......... .......... .......... 17% 3.78M 0s
14:30:15 150K .......... .......... .......... .......... .......... 23% 151M 0s
14:30:15 200K .......... .......... .......... .......... .......... 28% 43.9M 0s
14:30:15 250K .......... .......... .......... .......... .......... 34% 279M 0s
14:30:15 300K .......... .......... .......... .......... .......... 40% 4.12M 0s
14:30:15 350K .......... .......... .......... .......... .......... 46% 64.9M 0s
14:30:15 400K .......... .......... .......... .......... .......... 51% 112M 0s
14:30:15 450K .......... .......... .......... .......... .......... 57% 47.7M 0s
14:30:15 500K .......... .......... .......... .......... .......... 63% 4.33M 0s
14:30:15 550K .......... .......... .......... .......... .......... 69% 68.0M 0s
14:30:15 600K .......... .......... .......... .......... .......... 74% 139M 0s
14:30:15 650K .......... .......... .......... .......... .......... 80% 43.5M 0s
14:30:15 700K .......... .......... .......... .......... .......... 86% 122M 0s
14:30:15 750K .......... .......... .......... .......... .......... 92% 4.07M 0s
14:30:15 800K .......... .......... .......... .......... .......... 97% 165M 0s
14:30:15 850K .......... ........ 100% 304M=0.07s
14:30:15
14:30:15 2026-01-13 14:30:15 (12.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
14:30:15
14:30:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
14:30:15 ++ deactivate nondestructive
14:30:15 ++ '[' -n '' ']'
14:30:15 ++ '[' -n '' ']'
14:30:15 ++ hash -r
14:30:15 ++ '[' -n '' ']'
14:30:15 ++ unset VIRTUAL_ENV
14:30:15 ++ unset VIRTUAL_ENV_PROMPT
14:30:15 ++ '[' '!' nondestructive = nondestructive ']'
14:30:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
14:30:15 ++ export VIRTUAL_ENV
14:30:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:30:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:30:15 ++ export PATH
14:30:15 ++ '[' -n '' ']'
14:30:15 ++ '[' -z '' ']'
14:30:15 ++ _OLD_VIRTUAL_PS1=
14:30:15 ++ PS1='(.venv3) '
14:30:15 ++ export PS1
14:30:15 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
14:30:15 ++ export VIRTUAL_ENV_PROMPT
14:30:15 ++ hash -r
14:30:15 + pip install -U pip
14:30:15 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
14:30:15 Collecting pip
14:30:15 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
14:30:15 Installing collected packages: pip
14:30:15 Attempting uninstall: pip
14:30:15 Found existing installation: pip 22.3.1
14:30:15 Uninstalling pip-22.3.1:
14:30:15 Successfully uninstalled pip-22.3.1
14:30:16 Successfully installed pip-25.3
14:30:16 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
14:30:17 Collecting zeroc-ice==3.6.5
14:30:17 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
14:30:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 21.9 MB/s 0:00:01
14:30:19 Installing collected packages: zeroc-ice
14:30:20 Successfully installed zeroc-ice-3.6.5
14:30:20 + pip install markdown
14:30:20 Collecting markdown
14:30:20 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
14:30:20 Using cached markdown-3.10-py3-none-any.whl (107 kB)
14:30:20 Installing collected packages: markdown
14:30:20 Successfully installed markdown-3.10
14:30:20 + pip install reportlab
14:30:21 Collecting reportlab
14:30:21 Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB)
14:30:21 Collecting pillow>=9.0.0 (from reportlab)
14:30:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
14:30:21 Collecting charset-normalizer (from reportlab)
14:30:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
14:30:21 Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB)
14:30:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
14:30:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
14:30:21 Installing collected packages: pillow, charset-normalizer, reportlab
14:30:22
14:30:22 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7
14:30:22 + pip install omego
14:30:22 Collecting omego
14:30:22 Using cached omego-0.7.0-py3-none-any.whl
14:30:23 Collecting future (from omego)
14:30:23 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
14:30:23 Collecting yaclifw>=0.1.1 (from omego)
14:30:23 Using cached yaclifw-0.2.0-py3-none-any.whl
14:30:23 Collecting six (from yaclifw>=0.1.1->omego)
14:30:23 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
14:30:23 Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:30:23 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
14:30:23 Installing collected packages: six, future, yaclifw, omego
14:30:23
14:30:23 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
14:30:23 + pip install tables
14:30:23 Collecting tables
14:30:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
14:30:24 Collecting numpy>=1.20.0 (from tables)
14:30:24 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
14:30:24 Collecting numexpr>=2.6.2 (from tables)
14:30:24 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
14:30:24 Collecting packaging (from tables)
14:30:24 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
14:30:24 Collecting py-cpuinfo (from tables)
14:30:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
14:30:24 Collecting blosc2>=2.3.0 (from tables)
14:30:24 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
14:30:24 Collecting typing-extensions>=4.4.0 (from tables)
14:30:24 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
14:30:24 Collecting ndindex (from blosc2>=2.3.0->tables)
14:30:24 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
14:30:24 Collecting msgpack (from blosc2>=2.3.0->tables)
14:30:24 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
14:30:24 Collecting platformdirs (from blosc2>=2.3.0->tables)
14:30:24 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
14:30:24 Collecting requests (from blosc2>=2.3.0->tables)
14:30:24 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
14:30:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
14:30:24 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
14:30:24 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
14:30:24 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
14:30:24 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
14:30:24 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
14:30:24 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
14:30:24 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
14:30:24 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
14:30:24 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
14:30:24 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
14:30:24 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
14:30:24 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
14:30:24 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
14:30:24 Using cached packaging-25.0-py3-none-any.whl (66 kB)
14:30:24 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
14:30:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
14:30:24 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
14:30:24 Using cached idna-3.11-py3-none-any.whl (71 kB)
14:30:24 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
14:30:24 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
14:30:24 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
14:30:28
14:30:28 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
14:30:28 + pip install jinja2
14:30:28 Collecting jinja2
14:30:28 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
14:30:28 Collecting MarkupSafe>=2.0 (from jinja2)
14:30:28 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
14:30:28 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
14:30:28 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
14:30:28 Installing collected packages: MarkupSafe, jinja2
14:30:28
14:30:28 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
14:30:28 + pip install omero-py
14:30:29 Collecting omero-py
14:30:29 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
14:30:29 Collecting appdirs (from omero-py)
14:30:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
14:30:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
14:30:29 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
14:30:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
14:30:29 Collecting PyYAML (from omero-py)
14:30:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
14:30:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
14:30:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
14:30:29 Collecting portalocker (from omero-py)
14:30:29 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
14:30:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
14:30:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
14:30:29 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
14:30:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
14:30:29 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
14:30:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:30:29 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
14:30:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
14:30:29 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
14:30:31
14:30:31 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
14:30:31 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
14:30:31 Collecting omero-metadata
14:30:31 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-201bt3ni/omero-metadata_7e35731966c7474b94b48f7d27ad0054
14:30:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-201bt3ni/omero-metadata_7e35731966c7474b94b48f7d27ad0054
14:30:32 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b93d0c4f51c52a2ae3038db29507e3ff5578edb6
14:30:32 Installing build dependencies: started
14:30:33 Installing build dependencies: finished with status 'done'
14:30:33 Getting requirements to build wheel: started
14:30:33 Getting requirements to build wheel: finished with status 'done'
14:30:33 Preparing metadata (pyproject.toml): started
14:30:34 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
14:30:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
14:30:34 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
14:30:34 Collecting pandas (from omero-metadata)
14:30:34 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
14:30:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
14:30:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
14:30:34 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
14:30:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
14:30:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
14:30:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
14:30:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
14:30:34 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
14:30:34 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
14:30:34 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
14:30:34 Collecting pytz>=2020.1 (from pandas->omero-metadata)
14:30:34 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
14:30:34 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
14:30:34 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
14:30:34 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
14:30:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
14:30:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
14:30:34 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
14:30:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
14:30:34 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
14:30:34 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
14:30:34 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
14:30:34 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
14:30:34 Building wheels for collected packages: omero-metadata
14:30:34 Building wheel for omero-metadata (pyproject.toml): started
14:30:34 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
14:30:34 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=ed59aca52c693a709b263f55e12634c1b3a4935b726ec8fbb11a858eba7f42d2
14:30:34 Stored in directory: /tmp/pip-ephem-wheel-cache-le0r9yp9/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
14:30:34 Successfully built omero-metadata
14:30:34 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
14:30:39
14:30:39 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
14:30:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
14:30:39 Collecting omero-cli-render
14:30:39 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-qvntodhd/omero-cli-render_33f40b13677a49ae8c503711dbf3a2ba
14:30:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-qvntodhd/omero-cli-render_33f40b13677a49ae8c503711dbf3a2ba
14:30:41 Running command git checkout -b merge_ci --track origin/merge_ci
14:30:42 Switched to a new branch 'merge_ci'
14:30:42 branch 'merge_ci' set up to track 'origin/merge_ci'.
14:30:42 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c0cae4edbf876a5cef9e459c7560575e6e68be3d
14:30:42 Installing build dependencies: started
14:30:43 Installing build dependencies: finished with status 'done'
14:30:43 Getting requirements to build wheel: started
14:30:43 Getting requirements to build wheel: finished with status 'done'
14:30:43 Preparing metadata (pyproject.toml): started
14:30:43 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
14:30:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
14:30:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
14:30:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
14:30:43 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
14:30:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
14:30:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
14:30:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
14:30:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
14:30:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
14:30:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
14:30:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
14:30:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
14:30:43 Building wheels for collected packages: omero-cli-render
14:30:43 Building wheel for omero-cli-render (pyproject.toml): started
14:30:43 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
14:30:43 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=6bf3358a4c32a2b34c36be7d992ee203c6caae657cb10bfdb0c60d95f33e3562
14:30:43 Stored in directory: /tmp/pip-ephem-wheel-cache-6caico4s/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
14:30:43 Successfully built omero-cli-render
14:30:43 Installing collected packages: omero-cli-render
14:30:43 Successfully installed omero-cli-render-0.8.2.dev0
14:30:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
14:30:44 Collecting omero-cli-duplicate
14:30:44 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-mg3h_mh4/omero-cli-duplicate_aef255f55ac548c08bc37cfbae6f68fb
14:30:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-mg3h_mh4/omero-cli-duplicate_aef255f55ac548c08bc37cfbae6f68fb
14:30:46 Running command git checkout -b merge_ci --track origin/merge_ci
14:30:47 Switched to a new branch 'merge_ci'
14:30:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
14:30:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e187fc15b190a303bf3b81a4cc9b00c3be68ed20
14:30:47 Installing build dependencies: started
14:30:47 Installing build dependencies: finished with status 'done'
14:30:47 Getting requirements to build wheel: started
14:30:48 Getting requirements to build wheel: finished with status 'done'
14:30:48 Preparing metadata (pyproject.toml): started
14:30:48 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
14:30:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
14:30:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
14:30:48 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
14:30:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
14:30:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
14:30:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
14:30:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
14:30:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
14:30:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
14:30:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
14:30:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
14:30:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
14:30:48 Building wheels for collected packages: omero-cli-duplicate
14:30:48 Building wheel for omero-cli-duplicate (pyproject.toml): started
14:30:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
14:30:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=9e315853171331b589976b5846c99e4427d3ccc996bfc299ea8baaa8b0bc3089
14:30:48 Stored in directory: /tmp/pip-ephem-wheel-cache-z5i43w8y/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
14:30:48 Successfully built omero-cli-duplicate
14:30:48 Installing collected packages: omero-cli-duplicate
14:30:48 Successfully installed omero-cli-duplicate-0.4.1.dev0
14:30:48 + pip install omero-certificates
14:30:49 Collecting omero-certificates
14:30:49 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
14:30:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
14:30:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
14:30:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
14:30:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
14:30:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
14:30:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
14:30:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
14:30:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
14:30:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
14:30:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
14:30:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
14:30:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
14:30:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
14:30:49 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
14:30:49 Installing collected packages: omero-certificates
14:30:49 Successfully installed omero-certificates-0.4.0
14:30:49 + for x in *.tar.gz
14:30:49 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
14:30:49 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
14:30:49 Installing build dependencies: started
14:30:50 Installing build dependencies: finished with status 'done'
14:30:50 Getting requirements to build wheel: started
14:30:50 Getting requirements to build wheel: finished with status 'done'
14:30:50 Preparing metadata (pyproject.toml): started
14:30:50 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:50 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
14:30:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
14:30:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
14:30:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
14:30:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
14:30:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
14:30:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
14:30:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
14:30:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
14:30:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
14:30:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
14:30:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
14:30:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
14:30:50 Building wheels for collected packages: omero-dropbox
14:30:50 Building wheel for omero-dropbox (pyproject.toml): started
14:30:51 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
14:30:51 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=03d558cfb1d353ed94e4edb3743dfae7a627a1e2e5df2c214e1c2dfe0f543673
14:30:51 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
14:30:51 Successfully built omero-dropbox
14:30:51 Installing collected packages: omero-dropbox
14:30:51 Successfully installed omero-dropbox-5.7.1.dev0
14:30:51 + for x in *.tar.gz
14:30:51 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
14:30:51 Processing ./omero_marshal-0.9.2.dev0.tar.gz
14:30:51 Installing build dependencies: started
14:30:52 Installing build dependencies: finished with status 'done'
14:30:52 Getting requirements to build wheel: started
14:30:52 Getting requirements to build wheel: finished with status 'done'
14:30:52 Preparing metadata (pyproject.toml): started
14:30:52 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:52 Building wheels for collected packages: omero_marshal
14:30:52 Building wheel for omero_marshal (pyproject.toml): started
14:30:53 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
14:30:53 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=7dcb5e1eeac29593e56d8cfd784f342fcd068b26b5d6a71eab46a2285ab69b6c
14:30:53 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
14:30:53 Successfully built omero_marshal
14:30:53 Installing collected packages: omero_marshal
14:30:53 Successfully installed omero_marshal-0.9.2.dev0
14:30:53 + for x in *.tar.gz
14:30:53 + pip install -U omero_py-5.22.0.dev0.tar.gz
14:30:53 Processing ./omero_py-5.22.0.dev0.tar.gz
14:30:53 Installing build dependencies: started
14:30:54 Installing build dependencies: finished with status 'done'
14:30:54 Getting requirements to build wheel: started
14:30:55 Getting requirements to build wheel: finished with status 'done'
14:30:55 Preparing metadata (pyproject.toml): started
14:30:55 Preparing metadata (pyproject.toml): finished with status 'done'
14:30:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
14:30:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
14:30:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
14:30:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
14:30:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
14:30:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
14:30:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
14:30:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
14:30:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
14:30:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
14:30:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
14:30:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
14:30:55 Building wheels for collected packages: omero-py
14:30:55 Building wheel for omero-py (pyproject.toml): started
14:30:56 Building wheel for omero-py (pyproject.toml): finished with status 'done'
14:30:56 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2785928 sha256=03d3ec7426fee3481c9f031f7a61cfb08552b7c434e9362578f85f2ecb7107b7
14:30:56 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
14:30:56 Successfully built omero-py
14:30:56 Installing collected packages: omero-py
14:30:56 Attempting uninstall: omero-py
14:30:56 Found existing installation: omero-py 5.21.3
14:30:56 Uninstalling omero-py-5.21.3:
14:30:56 Successfully uninstalled omero-py-5.21.3
14:30:58 Successfully installed omero-py-5.22.0.dev0
14:30:58 + for x in *.tar.gz
14:30:58 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
14:30:58 Processing ./omero_scripts-5.9.2.dev0.tar.gz
14:30:58 Installing build dependencies: started
14:30:59 Installing build dependencies: finished with status 'done'
14:30:59 Getting requirements to build wheel: started
14:31:00 Getting requirements to build wheel: finished with status 'done'
14:31:00 Preparing metadata (pyproject.toml): started
14:31:00 Preparing metadata (pyproject.toml): finished with status 'done'
14:31:00 Building wheels for collected packages: omero-scripts
14:31:00 Building wheel for omero-scripts (pyproject.toml): started
14:31:00 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
14:31:00 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=771d76000d389299d72b84ccc8e7df0ca13c7079403c7c29523081f938bd829f
14:31:00 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
14:31:00 Successfully built omero-scripts
14:31:00 Installing collected packages: omero-scripts
14:31:00 Successfully installed omero-scripts-5.9.2.dev0
14:31:00 + for x in *.tar.gz
14:31:00 + pip install -U omero_web-5.30.2.dev0.tar.gz
14:31:01 Processing ./omero_web-5.30.2.dev0.tar.gz
14:31:01 Installing build dependencies: started
14:31:02 Installing build dependencies: finished with status 'done'
14:31:02 Getting requirements to build wheel: started
14:31:02 Getting requirements to build wheel: finished with status 'done'
14:31:02 Preparing metadata (pyproject.toml): started
14:31:02 Preparing metadata (pyproject.toml): finished with status 'done'
14:31:02 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
14:31:02 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
14:31:02 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
14:31:02 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
14:31:02 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
14:31:02 Collecting django-pipeline (from omero-web==5.30.2.dev0)
14:31:02 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
14:31:02 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
14:31:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
14:31:02 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
14:31:02 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
14:31:02 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
14:31:02 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
14:31:02 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
14:31:02 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
14:31:02 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
14:31:02 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
14:31:02 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
14:31:03 Collecting importlib-resources (from omero-web==5.30.2.dev0)
14:31:03 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
14:31:03 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
14:31:03 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
14:31:03 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
14:31:03 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
14:31:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
14:31:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
14:31:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
14:31:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
14:31:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
14:31:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
14:31:03 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
14:31:03 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
14:31:03 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
14:31:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
14:31:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
14:31:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
14:31:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
14:31:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
14:31:03 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
14:31:03 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
14:31:03 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
14:31:03 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
14:31:03 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
14:31:03 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
14:31:03 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
14:31:03 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
14:31:03 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
14:31:03 Building wheels for collected packages: omero-web
14:31:03 Building wheel for omero-web (pyproject.toml): started
14:31:04 Building wheel for omero-web (pyproject.toml): finished with status 'done'
14:31:04 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819190 sha256=987323642c5e63ac5434769b08e5f1f76fd38a749106711d9009d9aac0e94f59
14:31:04 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
14:31:04 Successfully built omero-web
14:31:04 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
14:31:06
14:31:06 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
14:31:06 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
14:31:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
14:31:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
14:31:06 --2026-01-13 14:31:06-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
14:31:07 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ...
14:31:07 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
14:31:07 HTTP request sent, awaiting response... 200 OK
14:31:07 Length: 129235 (126K) [text/plain]
14:31:07 Saving to: ‘Figure_To_Pdf.py’
14:31:07
14:31:07 0K .......... .......... .......... .......... .......... 39% 4.03M 0s
14:31:07 50K .......... .......... .......... .......... .......... 79% 11.6M 0s
14:31:07 100K .......... .......... ...... 100% 5.15M=0.02s
14:31:07
14:31:07 2026-01-13 14:31:07 (5.79 MB/s) - ‘Figure_To_Pdf.py’ saved [129235/129235]
14:31:07
14:31:07 + chmod 755 Figure_To_Pdf.py
14:31:07 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
14:31:07 + omero config set omero.db.name OMERO-server
14:31:08 + omero config set omero.db.host pg
14:31:09 + omero config set omero.db.user postgres
14:31:10 + omero config set omero.data.dir /home/omero/omero-server-data
14:31:11 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
14:31:12 + omero config set omero.db.poolsize 25
14:31:13 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
14:31:15 + omero config set omero.security.trustStorePassword changeit
14:31:16 + omero config set omero.mail.config true
14:31:17 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
14:31:18 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
14:31:19 + omero certificates
14:31:20 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
14:31:20 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
14:31:20 + '[' false = true ']'
14:31:20 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
14:31:20 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
14:31:20 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG dbcommand => upgrade
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG dbhost => localhost
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG dbname => OMERO-server
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG dbpass => omero
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG dbuser => omero
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG rootpass => omero
14:31:20 2026-01-13 14:31:20,942 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
14:31:20 2026-01-13 14:31:20,942 [omego.extern] INFO Executing : omero version
14:31:21 OMERO.py version:
14:31:22 OMERO.server version:
14:31:22 5.6.3-578-31c47ae256-ice36-b17
14:31:22 5.22.0.dev0
14:31:22 2026-01-13 14:31:22,154 [omego.extern] INFO Completed [1.212 s]
14:31:22 2026-01-13 14:31:22,154 [omego.extern] DEBUG Using omero CLI from omero
14:31:22 2026-01-13 14:31:22,154 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
14:31:22 2026-01-13 14:31:22,154 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:31:22 2026-01-13 14:31:22,154 [omego.extern] INFO Executing : omero config get --show-password
14:31:23 2026-01-13 14:31:23,307 [omego.extern] INFO Completed [1.153 s]
14:31:23 2026-01-13 14:31:23,307 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:31:23 2026-01-13 14:31:23,307 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
14:31:23 2026-01-13 14:31:23,313 [omego.extern] INFO Completed [0.005 s]
14:31:23 2026-01-13 14:31:23,313 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
14:31:23 2026-01-13 14:31:23,313 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
14:31:23
14:31:23 2026-01-13 14:31:23,313 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:31:23 2026-01-13 14:31:23,313 [omego.extern] INFO Executing : omero config get --show-password
14:31:24 2026-01-13 14:31:24,474 [omego.extern] INFO Completed [1.161 s]
14:31:24 2026-01-13 14:31:24,475 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:31:24 2026-01-13 14:31:24,475 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
14:31:24 2026-01-13 14:31:24,484 [omego.extern] INFO Completed [0.009 s]
14:31:24 2026-01-13 14:31:24,484 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n'
14:31:24 2026-01-13 14:31:24,484 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
14:31:24 2026-01-13 14:31:24,484 [omego.extern] INFO Running [current environment]: omero config get --show-password
14:31:24 2026-01-13 14:31:24,484 [omego.extern] INFO Executing : omero config get --show-password
14:31:25 2026-01-13 14:31:25,635 [omego.extern] INFO Completed [1.151 s]
14:31:25 2026-01-13 14:31:25,635 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
14:31:25 2026-01-13 14:31:25,635 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
14:31:25 2026-01-13 14:31:25,646 [omego.extern] INFO Completed [0.010 s]
14:31:25 2026-01-13 14:31:25,646 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
14:31:25 2026-01-13 14:31:25,646 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
14:31:25 2026-01-13 14:31:25,647 [ omego.db] INFO Database is already at OMERO5.4__0
14:31:25 + export LANG=en_US.UTF-8
14:31:25 + LANG=en_US.UTF-8
14:31:25 + export LANGUAGE=en_US:en
14:31:25 + LANGUAGE=en_US:en
14:31:25 + export LC_ALL=en_US.UTF-8
14:31:25 + LC_ALL=en_US.UTF-8
14:31:25 + BUILD_ID=DONT_KILL_ME
14:31:25 + omero admin start
14:31:29 No descriptor given. Using etc/grid/default.xml
14:31:36 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
14:31:36 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
14:31:36 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
14:31:36 Waiting on startup. Use CTRL-C to exit
14:31:37 + omero admin waitup
14:31:38 Waiting on startup. Use CTRL-C to exit
14:31:38 + omero admin diagnostics
14:31:39
14:31:39 ================================================================================
14:31:39 OMERO Diagnostics (admin)
14:31:39 ================================================================================
14:31:39
14:31:39 Commands: java -version 17.0.17 (/usr/bin/java)
14:31:39 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
14:31:39 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
14:31:39 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
14:31:39 Commands: psql --version 16.11 (/usr/bin/psql)
14:31:39 Commands: openssl version 3.5.11 (/usr/bin/openssl)
14:31:39
14:31:39 Component: OMERO.py 5.22.0.dev0
14:31:39 Component: OMERO.server 5.6.3-578-31c47ae256-ice36-b17
14:31:39
14:31:39 Server: icegridnode running
14:31:39 Server: Blitz-0 active (pid = 110944, enabled)
14:31:39 Server: Indexer-0 activating (enabled)
14:31:39 Server: OMERO.Glacier2 active (pid = 110977, enabled)
14:31:39 Server: OMERO.IceStorm active (pid = 110994, enabled)
14:31:39 Server: Processor-0 activating (enabled)
14:31:39 Server: Tables-0 activating (enabled)
14:31:39
14:31:39 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
14:31:39 Log files: Blitz-0.log 22.7 KB errors=0 warnings=1
14:31:39 Log files: DropBox.log n/a
14:31:39 Log files: FileServer.log n/a
14:31:39 Log files: Indexer-0.log 114 B
14:31:39 Log files: MonitorServer.log n/a
14:31:39 Log files: Processor-0.log 281 B
14:31:39 Log files: Tables-0.log 281 B
14:31:39 Log files: TestDropBox.log n/a
14:31:39 Log files: master.err empty
14:31:39 Log files: master.out 30.5 KB
14:31:39 Log files: Total size 0.05 MB
14:31:39
14:31:39
14:31:39 Environment:OMERO_HOME=(unset)
14:31:39 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
14:31:39 Environment:OMERO_NODE=(unset)
14:31:39 Environment:OMERO_MASTER=(unset)
14:31:39 Environment:OMERO_USERDIR=(unset)
14:31:39 Environment:OMERO_TMPDIR=(unset)
14:31:39 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:31:39 Environment:PYTHONPATH=(unset)
14:31:39 Environment:ICE_HOME=/opt/ice-3.6.5
14:31:39 Environment:LD_LIBRARY_PATH=(unset)
14:31:39 Environment:DYLD_LIBRARY_PATH=(unset)
14:31:39
14:31:39 OMERO SSL port:4064
14:31:39 OMERO TCP port:4063
14:31:39 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
14:31:39 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
14:31:39
14:31:39 JVM settings: Blitz-${index} -Xmx7200m
14:31:39 JVM settings: Indexer-${index} -Xmx4800m
14:31:39 JVM settings: PixelData-${index} -Xmx7200m
14:31:39 JVM settings: Repository-${index} -Xmx4800m
14:31:39
14:31:39 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
14:31:39 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
14:31:39 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
14:31:39 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
14:31:39 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
14:31:39 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
14:31:39 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
14:31:39 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
14:31:39 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
14:31:39 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
14:31:39 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
14:31:39 + deactivate
14:31:39 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
14:31:39 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:31:39 + export PATH
14:31:39 + unset _OLD_VIRTUAL_PATH
14:31:39 + '[' -n '' ']'
14:31:39 + hash -r
14:31:39 + '[' -n '' ']'
14:31:39 + unset VIRTUAL_ENV
14:31:39 + unset VIRTUAL_ENV_PROMPT
14:31:39 + '[' '!' '' = nondestructive ']'
14:31:39 + unset -f deactivate
14:31:39 Finished: SUCCESS
