Console

13:18:21 Started by upstream project "Trigger" build number 36
13:18:21 originally caused by:
13:18:21  Started by user devspace
13:18:21 Running as SYSTEM
13:18:22 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
13:18:22 [OMERO-server] $ /bin/bash -xe /tmp/jenkins863007112580199628.sh
13:18:22 + source /home/settings.env
13:18:22 ++ OMERO_DB_HOST=pg
13:18:22 ++ OMERO_DB_USER=postgres
13:18:22 ++ OMERO_DB_PASS=
13:18:22 ++ OMERO_ROOT_PASS=omero
13:18:22 ++ OMERO_DATA_DIR=/OMERO
13:18:22 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:18:22 + OMERO_DB_NAME=OMERO-server
13:18:22 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
13:18:22 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:18:22 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:18:22 + OMERO_DATA_DIR=/home/omero/omero-server-data
13:18:22 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
13:18:22 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
13:18:22 ++ deactivate nondestructive
13:18:22 ++ '[' -n '' ']'
13:18:22 ++ '[' -n '' ']'
13:18:22 ++ hash -r
13:18:22 ++ '[' -n '' ']'
13:18:22 ++ unset VIRTUAL_ENV
13:18:22 ++ unset VIRTUAL_ENV_PROMPT
13:18:22 ++ '[' '!' nondestructive = nondestructive ']'
13:18:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
13:18:22 ++ export VIRTUAL_ENV
13:18:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:18:22 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:18:22 ++ export PATH
13:18:22 ++ '[' -n '' ']'
13:18:22 ++ '[' -z '' ']'
13:18:22 ++ _OLD_VIRTUAL_PS1=
13:18:22 ++ PS1='(.venv3) '
13:18:22 ++ export PS1
13:18:22 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
13:18:22 ++ export VIRTUAL_ENV_PROMPT
13:18:22 ++ hash -r
13:18:22 + omero admin stop
13:18:58 Server not running
13:18:58 + echo not running
13:18:58 not running
13:18:58 + sleep 5
13:19:03 + deactivate
13:19:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
13:19:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:19:03 + export PATH
13:19:03 + unset _OLD_VIRTUAL_PATH
13:19:03 + '[' -n '' ']'
13:19:03 + hash -r
13:19:03 + '[' -n '' ']'
13:19:03 + unset VIRTUAL_ENV
13:19:03 + unset VIRTUAL_ENV_PROMPT
13:19:03 + '[' '!' '' = nondestructive ']'
13:19:03 + unset -f deactivate
13:19:03 + rm -rf /home/omero/workspace/OMERO-server/.venv3
13:21:36 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
13:21:56 + '[' false = true ']'
13:21:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
13:21:56 Skipping PURGE_DATA:CleanDbAndRepo
13:21:56 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
13:22:02 Copied 1 artifact from "OMERO-build" build number 26
13:22:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 22
13:22:02 Copied 2 artifacts from "OMERO-build-build" build number 34
13:22:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7287550926543271700.sh
13:22:02 + source /home/settings.env
13:22:02 ++ OMERO_DB_HOST=pg
13:22:02 ++ OMERO_DB_USER=postgres
13:22:02 ++ OMERO_DB_PASS=
13:22:02 ++ OMERO_ROOT_PASS=omero
13:22:02 ++ OMERO_DATA_DIR=/OMERO
13:22:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:22:02 + OMERO_DB_NAME=OMERO-server
13:22:02 + OMERO_DATA_DIR=/home/omero/omero-server-data
13:22:02 + mkdir -p /home/omero/omero-server-data
13:22:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
13:22:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:22:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
13:22:02 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
13:22:02 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
13:22:02 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
13:22:02 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
13:22:02 ++ ls OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:22:02 + ZIP=OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:22:02 + '[' '!' -z '' ']'
13:22:02 + DIST=OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26
13:22:02 + unzip OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:22:02 Archive:  OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/grid/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/profiles/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/error/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/janelia/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/matplotlib/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/ncsa_paledit/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/seaborn/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/luts/wcif/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/analysis_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/annotation_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/export_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/figure_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/import_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/scripts/omero/util_scripts/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/server/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/share/licenses/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__1/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__10/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__2/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__5/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__6/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__7/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__8/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__9/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__4/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__5/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__6/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__7/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.1__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__1/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__2/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__3/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/var/
13:22:03    creating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/var/tmp/
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/LICENSE.txt  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/backup.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/mail-senders.example  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/blitz/mail-server.example  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/build.properties  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/env.bat  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/env.sh  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/hibernate.properties  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/ice.config  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-cli.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-indexing-cli.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback-indexing.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/logback.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/mime.types  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/node1.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/node2.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/omero.properties  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/profiles/psql  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/rollover.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/Windows.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/error/maintainance.html  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/README  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/default.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/templates.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/grid/windefault.xml  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/ice.config  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/internal.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/master.cfg  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/templates/robot.template  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/etc/testdropbox.config  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/history.rst  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/OMEZarrReader.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/accessors-smart.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/activation.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aggdesigner-algorithm.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aircompressor.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/antlr.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aopalliance.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/apiguardian-api.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/asm.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/avatica-core.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/avatica-metrics.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-core.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-kms.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/aws-java-sdk-s3.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/base.jar  
13:22:03   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-anim.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-awt-util.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-bridge.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-codec.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-constants.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-css.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-dom.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-ext.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-gvt.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-i18n.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-parser.jar  
13:22:04   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/lib/client/batik-script.jar  
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13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/misc/enums.py  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__1/OMERO3__7.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__10/OMERO3A__9.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/OMERO3A__10.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__11/OMERO3A__5.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__2/OMERO3A__1.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/OMERO3A__2.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__3/OMERO3__5.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/OMERO3A__3.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__4/OMERO3__5.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__5/OMERO3A__4.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__6/OMERO3A__5.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__7/OMERO3A__6.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__8/OMERO3A__6.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3A__9/OMERO3A__8.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__4/OMERO3__1.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__5/OMERO3__4.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__6/OMERO3__5.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO3__7/OMERO3__6.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.1__0/OMERO4__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO4__0/OMERO3A__11.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
13:22:16   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/psql-footer.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/psql-header.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/schema.sql  
13:22:17   inflating: OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26/sql/psql/OMERO5.4__0/views.sql  
13:22:17 + rm -f OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26.zip
13:22:17 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-623-fbd2e29eae-ice36-b26 /home/omero/workspace/OMERO-server/OMERO.server
13:22:17 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
13:22:17 ++ deactivate nondestructive
13:22:17 ++ '[' -n '' ']'
13:22:17 ++ '[' -n '' ']'
13:22:17 ++ hash -r
13:22:17 ++ '[' -n '' ']'
13:22:17 ++ unset VIRTUAL_ENV
13:22:17 ++ unset VIRTUAL_ENV_PROMPT
13:22:17 ++ '[' '!' nondestructive = nondestructive ']'
13:22:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
13:22:17 ++ export VIRTUAL_ENV
13:22:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:22:17 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:22:17 ++ export PATH
13:22:17 ++ '[' -n '' ']'
13:22:17 ++ '[' -z '' ']'
13:22:17 ++ _OLD_VIRTUAL_PS1=
13:22:17 ++ PS1='(.venv3) '
13:22:17 ++ export PS1
13:22:17 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
13:22:17 ++ export VIRTUAL_ENV_PROMPT
13:22:17 ++ hash -r
13:22:17 + pip install -U pip
13:22:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
13:22:18 Collecting pip
13:22:18   Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
13:22:18 Installing collected packages: pip
13:22:18   Attempting uninstall: pip
13:22:18     Found existing installation: pip 22.3.1
13:22:19     Uninstalling pip-22.3.1:
13:22:19       Successfully uninstalled pip-22.3.1
13:22:32 Successfully installed pip-26.1.2
13:22:32 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
13:22:33 Collecting zeroc-ice==3.6.5
13:22:34   Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
13:22:37      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s  0:00:02
13:22:37 Installing collected packages: zeroc-ice
13:22:40 Successfully installed zeroc-ice-3.6.5
13:22:40 + pip install markdown
13:22:41 Collecting markdown
13:22:41   Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
13:22:41 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
13:22:41 Installing collected packages: markdown
13:22:42 Successfully installed markdown-3.10.2
13:22:42 + pip install reportlab
13:22:43 Collecting reportlab
13:22:43   Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
13:22:43 Collecting pillow>=9.0.0 (from reportlab)
13:22:43   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
13:22:43 Collecting charset-normalizer (from reportlab)
13:22:43   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
13:22:44 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
13:22:44 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
13:22:44 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
13:22:44 Installing collected packages: pillow, charset-normalizer, reportlab
13:22:52 
13:22:52 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
13:22:52 + pip install omego
13:22:53 Collecting omego
13:22:53   Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
13:22:53 Collecting future (from omego)
13:22:53   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
13:22:53 Collecting yaclifw>=0.1.1 (from omego)
13:22:53   Using cached yaclifw-0.2.0-py3-none-any.whl
13:22:53 Collecting six (from yaclifw>=0.1.1->omego)
13:22:54   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
13:22:54 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
13:22:54 Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:22:54 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
13:22:54 Installing collected packages: six, future, yaclifw, omego
13:22:59 
13:22:59 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
13:22:59 + pip install tables
13:23:00 Collecting tables
13:23:00   Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
13:23:00 Collecting numpy>=1.20.0 (from tables)
13:23:00   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
13:23:00 Collecting numexpr>=2.6.2 (from tables)
13:23:00   Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
13:23:00 Collecting packaging (from tables)
13:23:00   Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
13:23:00 Collecting py-cpuinfo (from tables)
13:23:01   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
13:23:01 Collecting blosc2>=2.3.0 (from tables)
13:23:01   Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
13:23:01 Collecting ndindex (from blosc2>=2.3.0->tables)
13:23:01   Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
13:23:01 Collecting msgpack (from blosc2>=2.3.0->tables)
13:23:01   Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
13:23:01 Collecting pydantic (from blosc2>=2.3.0->tables)
13:23:01   Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
13:23:01 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
13:23:02   Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
13:23:02 Collecting rich (from blosc2>=2.3.0->tables)
13:23:02   Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
13:23:02 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
13:23:02   Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
13:23:02 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
13:23:02   Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
13:23:02 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
13:23:02   Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
13:23:02 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
13:23:02   Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
13:23:02 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
13:23:02   Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
13:23:03 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
13:23:03   Using cached h2-4.4.0-py3-none-any.whl.metadata (3.8 kB)
13:23:03 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
13:23:03   Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
13:23:03 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
13:23:03   Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
13:23:03 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
13:23:03   Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
13:23:03 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
13:23:03   Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
13:23:03 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
13:23:03   Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
13:23:04 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
13:23:04   Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
13:23:04 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
13:23:04   Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
13:23:04 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
13:23:04   Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
13:23:04 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
13:23:04   Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
13:23:05 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
13:23:05   Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
13:23:05 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
13:23:05 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
13:23:05 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
13:23:05 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
13:23:05 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
13:23:05 Using cached h2-4.4.0-py3-none-any.whl (62 kB)
13:23:05 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
13:23:05 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
13:23:05 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
13:23:05 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
13:23:05 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
13:23:05 Using cached idna-3.18-py3-none-any.whl (65 kB)
13:23:05 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
13:23:06 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
13:23:06 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
13:23:06 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
13:23:06 Using cached packaging-26.2-py3-none-any.whl (100 kB)
13:23:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
13:23:06 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
13:23:06 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
13:23:06 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
13:23:06 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
13:23:06 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
13:23:06 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
13:23:06 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
13:23:06 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
13:23:06 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
13:23:06 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
13:23:52 
13:23:52 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.9.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
13:23:52 + pip install jinja2
13:23:53 Collecting jinja2
13:23:53   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
13:23:53 Collecting MarkupSafe>=2.0 (from jinja2)
13:23:53   Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
13:23:53 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
13:23:53 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
13:23:53 Installing collected packages: MarkupSafe, jinja2
13:23:54 
13:23:54 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
13:23:54 + pip install omero-py
13:23:55 Collecting omero-py
13:23:55   Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
13:23:55 Collecting appdirs (from omero-py)
13:23:55   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
13:23:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
13:23:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
13:23:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
13:23:56 Collecting PyYAML (from omero-py)
13:23:56   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
13:23:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
13:23:56 Collecting requests (from omero-py)
13:23:56   Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
13:23:56 Collecting portalocker (from omero-py)
13:23:56   Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
13:23:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
13:23:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
13:23:56 Collecting urllib3<3,>=1.26 (from requests->omero-py)
13:23:56   Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
13:23:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
13:23:56 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
13:23:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:23:56 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
13:23:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
13:23:56 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
13:23:56 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
13:23:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
13:24:14 
13:24:14 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
13:24:14 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
13:24:15 Collecting omero-metadata
13:24:15   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-sdu1mmz5/omero-metadata_1d2e1e61985049dcab879420b4b010da
13:24:15   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-sdu1mmz5/omero-metadata_1d2e1e61985049dcab879420b4b010da
13:24:16   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a16d6e427a68ad6c8ce3f5941e2381839fa2efb7
13:24:16   Installing build dependencies: started
13:24:18   Installing build dependencies: finished with status 'done'
13:24:18   Getting requirements to build wheel: started
13:24:18   Getting requirements to build wheel: finished with status 'done'
13:24:18   Preparing metadata (pyproject.toml): started
13:24:18   Preparing metadata (pyproject.toml): finished with status 'done'
13:24:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
13:24:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
13:24:18 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
13:24:19 Collecting pandas (from omero-metadata)
13:24:19   Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
13:24:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
13:24:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
13:24:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
13:24:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
13:24:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
13:24:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
13:24:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
13:24:19 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
13:24:19 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
13:24:19   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
13:24:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
13:24:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
13:24:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
13:24:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
13:24:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
13:24:19 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
13:24:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
13:24:19 Building wheels for collected packages: omero-metadata
13:24:19   Building wheel for omero-metadata (pyproject.toml): started
13:24:19   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
13:24:19   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=813f5a6863ea05603605e8205b7bad3b476b79443163eab8527991f91d6b29ff
13:24:19   Stored in directory: /tmp/pip-ephem-wheel-cache-190mlb8t/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
13:24:19 Successfully built omero-metadata
13:24:19 Installing collected packages: python-dateutil, pandas, omero-metadata
13:24:57 
13:24:58 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0
13:24:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
13:24:59 Collecting omero-cli-render
13:24:59   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-avxld2sz/omero-cli-render_8024c7668fcd46e783cf2e2b4f00c9ea
13:24:59   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-avxld2sz/omero-cli-render_8024c7668fcd46e783cf2e2b4f00c9ea
13:25:03   Running command git checkout -b merge_ci --track origin/merge_ci
13:25:03   Switched to a new branch 'merge_ci'
13:25:03   branch 'merge_ci' set up to track 'origin/merge_ci'.
13:25:03   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bb2c073b33d455edef24ec8e5ad2fe0b30320b14
13:25:03   Installing build dependencies: started
13:25:05   Installing build dependencies: finished with status 'done'
13:25:05   Getting requirements to build wheel: started
13:25:05   Getting requirements to build wheel: finished with status 'done'
13:25:05   Preparing metadata (pyproject.toml): started
13:25:05   Preparing metadata (pyproject.toml): finished with status 'done'
13:25:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
13:25:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
13:25:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
13:25:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
13:25:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
13:25:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
13:25:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
13:25:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
13:25:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
13:25:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
13:25:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
13:25:05 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
13:25:05 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
13:25:05 Building wheels for collected packages: omero-cli-render
13:25:05   Building wheel for omero-cli-render (pyproject.toml): started
13:25:06   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
13:25:06   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=b1cc65afd667ba811292f3631823376c45bdd2611c65d18bc541f67aaa902680
13:25:06   Stored in directory: /tmp/pip-ephem-wheel-cache-l97g57po/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
13:25:06 Successfully built omero-cli-render
13:25:06 Installing collected packages: omero-cli-render
13:25:06 Successfully installed omero-cli-render-0.8.2.dev0
13:25:06 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
13:25:07 Collecting omero-cli-duplicate
13:25:07   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-zwrhxmms/omero-cli-duplicate_cf6e3431fac546ea83db2a547b1b5b2d
13:25:07   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-zwrhxmms/omero-cli-duplicate_cf6e3431fac546ea83db2a547b1b5b2d
13:25:08   Running command git checkout -b merge_ci --track origin/merge_ci
13:25:08   Switched to a new branch 'merge_ci'
13:25:08   branch 'merge_ci' set up to track 'origin/merge_ci'.
13:25:08   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1f8b6eefedb0b03fb0417615c64515cae44f06a8
13:25:08   Installing build dependencies: started
13:25:09   Installing build dependencies: finished with status 'done'
13:25:09   Getting requirements to build wheel: started
13:25:10   Getting requirements to build wheel: finished with status 'done'
13:25:10   Preparing metadata (pyproject.toml): started
13:25:10   Preparing metadata (pyproject.toml): finished with status 'done'
13:25:10 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
13:25:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
13:25:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
13:25:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
13:25:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
13:25:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
13:25:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
13:25:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
13:25:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
13:25:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
13:25:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
13:25:10 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
13:25:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
13:25:10 Building wheels for collected packages: omero-cli-duplicate
13:25:10   Building wheel for omero-cli-duplicate (pyproject.toml): started
13:25:10   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
13:25:10   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=071199fb7e261582dada75b64ecdf6d806794ad6139c1189cf1ce724ab3aa3db
13:25:10   Stored in directory: /tmp/pip-ephem-wheel-cache-cidzzc85/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
13:25:10 Successfully built omero-cli-duplicate
13:25:10 Installing collected packages: omero-cli-duplicate
13:25:11 Successfully installed omero-cli-duplicate-0.4.1.dev0
13:25:11 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
13:25:11 Collecting omero-cli-zarr
13:25:11   Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-imgk3wh9/omero-cli-zarr_ffe84e6ddb654949b43f63a246ba1779
13:25:11   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-imgk3wh9/omero-cli-zarr_ffe84e6ddb654949b43f63a246ba1779
13:25:14   Running command git checkout -b merge_ci --track origin/merge_ci
13:25:15   Switched to a new branch 'merge_ci'
13:25:15   branch 'merge_ci' set up to track 'origin/merge_ci'.
13:25:15   Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 2fe722c7703dd9c7d6d5b1dd2eaecfa6cbc82ad0
13:25:15   Installing build dependencies: started
13:25:16   Installing build dependencies: finished with status 'done'
13:25:16   Getting requirements to build wheel: started
13:25:16   Getting requirements to build wheel: finished with status 'done'
13:25:16   Installing backend dependencies: started
13:25:18   Installing backend dependencies: finished with status 'done'
13:25:18   Preparing metadata (pyproject.toml): started
13:25:18   Preparing metadata (pyproject.toml): finished with status 'done'
13:25:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
13:25:18 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
13:25:18   Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
13:25:18 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
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13:25:29 Building wheels for collected packages: omero-cli-zarr
13:25:29   Building wheel for omero-cli-zarr (pyproject.toml): started
13:25:29   Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
13:25:29   Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g2fe722c-py3-none-any.whl size=38401 sha256=39a09c7719f059757f959b61b1681d06aab0939710cdb8480253e8129b072d9d
13:25:29   Stored in directory: /tmp/pip-ephem-wheel-cache-gqvpcuiz/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
13:25:29 Successfully built omero-cli-zarr
13:25:30 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
13:26:03   Attempting uninstall: pydantic-core
13:26:03     Found existing installation: pydantic_core 2.46.4
13:26:03     Uninstalling pydantic_core-2.46.4:
13:26:03       Successfully uninstalled pydantic_core-2.46.4
13:26:35   Attempting uninstall: pydantic
13:26:35     Found existing installation: pydantic 2.13.4
13:26:35     Uninstalling pydantic-2.13.4:
13:26:36       Successfully uninstalled pydantic-2.13.4
13:27:13 
13:27:14 Successfully installed Deprecated-1.3.1 aiobotocore-3.8.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.46 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g2fe722c partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
13:27:14 + pip install omero-certificates
13:27:15 Collecting omero-certificates
13:27:15   Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
13:27:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
13:27:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
13:27:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
13:27:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
13:27:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
13:27:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
13:27:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
13:27:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
13:27:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
13:27:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
13:27:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
13:27:15 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
13:27:15 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
13:27:15 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
13:27:15 Installing collected packages: omero-certificates
13:27:16 Successfully installed omero-certificates-0.4.0
13:27:16 + for x in *.tar.gz
13:27:16 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
13:27:17 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
13:27:17   Installing build dependencies: started
13:27:18   Installing build dependencies: finished with status 'done'
13:27:18   Getting requirements to build wheel: started
13:27:18   Getting requirements to build wheel: finished with status 'done'
13:27:18   Preparing metadata (pyproject.toml): started
13:27:19   Preparing metadata (pyproject.toml): finished with status 'done'
13:27:19 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
13:27:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
13:27:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
13:27:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
13:27:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
13:27:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
13:27:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
13:27:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
13:27:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
13:27:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
13:27:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
13:27:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
13:27:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
13:27:19 Building wheels for collected packages: omero-dropbox
13:27:19   Building wheel for omero-dropbox (pyproject.toml): started
13:27:19   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
13:27:19   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=418739dadf059b03e5edb78320068c6dffec66e165a2341acf4905ee8698af17
13:27:19   Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
13:27:19 Successfully built omero-dropbox
13:27:19 Installing collected packages: omero-dropbox
13:27:20 Successfully installed omero-dropbox-5.7.1.dev0
13:27:20 + for x in *.tar.gz
13:27:20 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
13:27:21 Processing ./omero_marshal-0.9.2.dev0.tar.gz
13:27:21   Installing build dependencies: started
13:27:22   Installing build dependencies: finished with status 'done'
13:27:22   Getting requirements to build wheel: started
13:27:22   Getting requirements to build wheel: finished with status 'done'
13:27:22   Preparing metadata (pyproject.toml): started
13:27:23   Preparing metadata (pyproject.toml): finished with status 'done'
13:27:23 Building wheels for collected packages: omero_marshal
13:27:23   Building wheel for omero_marshal (pyproject.toml): started
13:27:23   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
13:27:23   Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=38c5ed4180c2d9379a343aca3132d918f03e0b02ae67689c6eaef8f061a14cc4
13:27:23   Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
13:27:23 Successfully built omero_marshal
13:27:23 Installing collected packages: omero_marshal
13:27:26 Successfully installed omero_marshal-0.9.2.dev0
13:27:26 + for x in *.tar.gz
13:27:26 + pip install -U omero_py-5.22.2.dev0.tar.gz
13:27:26 Processing ./omero_py-5.22.2.dev0.tar.gz
13:27:27   Installing build dependencies: started
13:27:28   Installing build dependencies: finished with status 'done'
13:27:28   Getting requirements to build wheel: started
13:27:28   Getting requirements to build wheel: finished with status 'done'
13:27:28   Preparing metadata (pyproject.toml): started
13:27:29   Preparing metadata (pyproject.toml): finished with status 'done'
13:27:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
13:27:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
13:27:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
13:27:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
13:27:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
13:27:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
13:27:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
13:27:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
13:27:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
13:27:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
13:27:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
13:27:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.7.22)
13:27:29 Building wheels for collected packages: omero-py
13:27:29   Building wheel for omero-py (pyproject.toml): started
13:27:30   Building wheel for omero-py (pyproject.toml): finished with status 'done'
13:27:30   Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=7b486d0a9592ab30426fac9a52a403b6ca60ab107656357f143a6b208c04f335
13:27:30   Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
13:27:30 Successfully built omero-py
13:27:30 Installing collected packages: omero-py
13:27:30   Attempting uninstall: omero-py
13:27:30     Found existing installation: omero-py 5.22.1
13:27:31     Uninstalling omero-py-5.22.1:
13:27:42       Successfully uninstalled omero-py-5.22.1
13:27:58 Successfully installed omero-py-5.22.2.dev0
13:27:58 + for x in *.tar.gz
13:27:58 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
13:27:59 Processing ./omero_scripts-5.10.1.dev0.tar.gz
13:27:59   Installing build dependencies: started
13:28:00   Installing build dependencies: finished with status 'done'
13:28:00   Getting requirements to build wheel: started
13:28:00   Getting requirements to build wheel: finished with status 'done'
13:28:00   Preparing metadata (pyproject.toml): started
13:28:01   Preparing metadata (pyproject.toml): finished with status 'done'
13:28:01 Building wheels for collected packages: omero-scripts
13:28:01   Building wheel for omero-scripts (pyproject.toml): started
13:28:01   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
13:28:01   Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=1ae4b06d9f915261eba964aee4b88c7d82ec7b167c1e9167618f0bab3d6a7b7e
13:28:01   Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
13:28:01 Successfully built omero-scripts
13:28:01 Installing collected packages: omero-scripts
13:28:02 Successfully installed omero-scripts-5.10.1.dev0
13:28:02 + for x in *.tar.gz
13:28:02 + pip install -U omero_web-5.32.1.dev0.tar.gz
13:28:03 Processing ./omero_web-5.32.1.dev0.tar.gz
13:28:03   Installing build dependencies: started
13:28:05   Installing build dependencies: finished with status 'done'
13:28:05   Getting requirements to build wheel: started
13:28:05   Getting requirements to build wheel: finished with status 'done'
13:28:05   Preparing metadata (pyproject.toml): started
13:28:06   Preparing metadata (pyproject.toml): finished with status 'done'
13:28:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
13:28:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
13:28:06   Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
13:28:06 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
13:28:06   Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
13:28:06 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
13:28:06   Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
13:28:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
13:28:06   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
13:28:06 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
13:28:07   Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
13:28:07 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
13:28:07   Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
13:28:07 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
13:28:07 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
13:28:07 Collecting pytz (from omero-web==5.32.1.dev0)
13:28:07   Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
13:28:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
13:28:07 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
13:28:07 Collecting importlib-resources (from omero-web==5.32.1.dev0)
13:28:07   Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
13:28:07 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
13:28:07   Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
13:28:07 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
13:28:07   Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
13:28:07 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
13:28:07 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
13:28:07   Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
13:28:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
13:28:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
13:28:07 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
13:28:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
13:28:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
13:28:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
13:28:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
13:28:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
13:28:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
13:28:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22)
13:28:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
13:28:08 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
13:28:08 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
13:28:08 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
13:28:08 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
13:28:08 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
13:28:08 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
13:28:08 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
13:28:08 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
13:28:08 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
13:28:08 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
13:28:08 Building wheels for collected packages: omero-web
13:28:08   Building wheel for omero-web (pyproject.toml): started
13:28:09   Building wheel for omero-web (pyproject.toml): finished with status 'done'
13:28:09   Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820499 sha256=d90a8ff370dd4b02bdbd75deb5db3a5f628179efb9be0b6d9201d8b3ac14cfb8
13:28:09   Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
13:28:09 Successfully built omero-web
13:28:10 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
13:29:16 
13:29:16 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
13:29:16 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
13:29:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
13:29:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
13:29:17 --2026-07-29 13:29:17--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
13:29:17 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ...
13:29:17 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
13:29:17 HTTP request sent, awaiting response... 200 OK
13:29:17 Length: 139337 (136K) [text/plain]
13:29:17 Saving to: ‘Figure_To_Pdf.py’
13:29:17 
13:29:17      0K .......... .......... .......... .......... .......... 36% 2.87M 0s
13:29:17     50K .......... .......... .......... .......... .......... 73% 8.52M 0s
13:29:17    100K .......... .......... .......... ......               100% 3.69M=0.03s
13:29:17 
13:29:17 2026-07-29 13:29:17 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
13:29:17 
13:29:17 + chmod 755 Figure_To_Pdf.py
13:29:17 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
13:29:17 + omero config set omero.db.name OMERO-server
13:29:24 + omero config set omero.db.host pg
13:29:29 + omero config set omero.db.user postgres
13:29:34 + omero config set omero.data.dir /home/omero/omero-server-data
13:29:38 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
13:29:43 + omero config set omero.db.poolsize 25
13:29:48 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
13:29:52 + omero config set omero.security.trustStorePassword changeit
13:29:57 + omero config set omero.mail.config true
13:30:02 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
13:30:07 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
13:30:11 + omero certificates
13:30:16 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
13:30:16 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
13:30:16 + '[' false = true ']'
13:30:16 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
13:30:16 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
13:30:16 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
13:30:16 2026-07-29 13:30:16,799 [    omego.db] DEBUG            dbcommand => upgrade
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG               dbhost => localhost
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG               dbname => OMERO-server
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG               dbpass => omero
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG               dbuser => omero
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG             rootpass => omero
13:30:16 2026-07-29 13:30:16,800 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
13:30:16 2026-07-29 13:30:16,800 [omego.extern] INFO  Executing : omero version
13:30:21 OMERO.py version:
13:30:21 OMERO.server version:
13:30:21 5.6.3-623-fbd2e29eae-ice36-b26
13:30:21 5.22.2.dev0
13:30:21 2026-07-29 13:30:21,787 [omego.extern] INFO  Completed [4.987 s]
13:30:21 2026-07-29 13:30:21,788 [omego.extern] DEBUG Using omero CLI from omero
13:30:21 2026-07-29 13:30:21,788 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
13:30:21 2026-07-29 13:30:21,788 [omego.extern] INFO  Running [current environment]: omero config get --show-password
13:30:21 2026-07-29 13:30:21,788 [omego.extern] INFO  Executing : omero config get --show-password
13:30:26 2026-07-29 13:30:26,118 [omego.extern] INFO  Completed [4.330 s]
13:30:26 2026-07-29 13:30:26,118 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
13:30:26 2026-07-29 13:30:26,118 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO  Completed [0.109 s]
13:30:26 2026-07-29 13:30:26,228 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
13:30:26 2026-07-29 13:30:26,228 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.14
13:30:26 
13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO  Running [current environment]: omero config get --show-password
13:30:26 2026-07-29 13:30:26,228 [omego.extern] INFO  Executing : omero config get --show-password
13:30:30 2026-07-29 13:30:30,727 [omego.extern] INFO  Completed [4.499 s]
13:30:30 2026-07-29 13:30:30,727 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
13:30:30 2026-07-29 13:30:30,727 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO  Completed [0.059 s]
13:30:30 2026-07-29 13:30:30,786 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
13:30:30 2026-07-29 13:30:30,786 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO  Running [current environment]: omero config get --show-password
13:30:30 2026-07-29 13:30:30,786 [omego.extern] INFO  Executing : omero config get --show-password
13:30:35 2026-07-29 13:30:35,482 [omego.extern] INFO  Completed [4.696 s]
13:30:35 2026-07-29 13:30:35,482 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
13:30:35 2026-07-29 13:30:35,482 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
13:30:35 2026-07-29 13:30:35,991 [omego.extern] INFO  Completed [0.508 s]
13:30:35 2026-07-29 13:30:35,991 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
13:30:35 2026-07-29 13:30:35,991 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
13:30:36 2026-07-29 13:30:36,035 [    omego.db] INFO  Database is already at OMERO5.4__0
13:30:36 + export LANG=en_US.UTF-8
13:30:36 + LANG=en_US.UTF-8
13:30:36 + export LANGUAGE=en_US:en
13:30:36 + LANGUAGE=en_US:en
13:30:36 + export LC_ALL=en_US.UTF-8
13:30:36 + LC_ALL=en_US.UTF-8
13:30:36 + BUILD_ID=DONT_KILL_ME
13:30:36 + omero admin start
13:30:47 No descriptor given. Using etc/grid/default.xml
13:30:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
13:30:59 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
13:30:59 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
13:30:59 Waiting on startup. Use CTRL-C to exit
13:30:59 + omero admin waitup
13:31:03 Waiting on startup. Use CTRL-C to exit
13:31:04 + omero admin diagnostics
13:31:08 
13:31:08 ================================================================================
13:31:08 OMERO Diagnostics (admin)
13:31:08 ================================================================================
13:31:08         
13:31:08 Commands:   java -version                  21.0.11   (/usr/bin/java)
13:31:08 Commands:   python -V                      3.11.13   (/home/omero/workspace/OMERO-server/.venv3/bin/python)
13:31:08 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
13:31:08 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
13:31:08 Commands:   psql --version                 16.14     (/usr/bin/psql)
13:31:08 Commands:   openssl version                3.5.527   (/usr/bin/openssl)
13:31:08 
13:31:08 Component:  OMERO.py                       5.22.2.dev0
13:31:08 Component:  OMERO.server                   5.6.3-623-fbd2e29eae-ice36-b26
13:31:08 
13:31:08 Server:     icegridnode                    running
13:31:08 Server:     Blitz-0                        active (pid = 3316, enabled)
13:31:08 Server:     Indexer-0                      active (pid = 3339, enabled)
13:31:08 Server:     OMERO.Glacier2                 active (pid = 3344, enabled)
13:31:08 Server:     OMERO.IceStorm                 active (pid = 3371, enabled)
13:31:08 Server:     Processor-0                    activating (enabled)
13:31:08 Server:     Tables-0                       activating (enabled)
13:31:08 
13:31:08 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
13:31:08 Log files:  Blitz-0.log                    22.7 KB       errors=0    warnings=1   
13:31:08 Log files:  DropBox.log                    n/a
13:31:08 Log files:  FileServer.log                 n/a
13:31:08 Log files:  Indexer-0.log                  2.6 KB       
13:31:08 Log files:  MonitorServer.log              n/a
13:31:08 Log files:  Processor-0.log                592 B        
13:31:08 Log files:  Tables-0.log                   841 B        
13:31:08 Log files:  TestDropBox.log                n/a
13:31:08 Log files:  master.err                     empty
13:31:08 Log files:  master.out                     30.5 KB      
13:31:08 Log files:  Total size                     0.06 MB
13:31:08 
13:31:08 
13:31:08 Environment:OMERO_HOME=(unset)             
13:31:08 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
13:31:08 Environment:OMERO_NODE=(unset)             
13:31:08 Environment:OMERO_MASTER=(unset)           
13:31:08 Environment:OMERO_USERDIR=(unset)          
13:31:08 Environment:OMERO_TMPDIR=(unset)           
13:31:08 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
13:31:08 Environment:PYTHONPATH=(unset)             
13:31:08 Environment:ICE_HOME=/opt/ice-3.6.5        
13:31:08 Environment:LD_LIBRARY_PATH=(unset)        
13:31:08 Environment:DYLD_LIBRARY_PATH=(unset)      
13:31:08 
13:31:08 OMERO SSL port:4064                           
13:31:08 OMERO TCP port:4063                           
13:31:08 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
13:31:08 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
13:31:08 
13:31:08 JVM settings: Blitz-${index}                -Xmx7200m
13:31:08 JVM settings: Indexer-${index}              -Xmx4800m
13:31:08 JVM settings: PixelData-${index}            -Xmx7200m
13:31:08 JVM settings: Repository-${index}           -Xmx4800m
13:31:08 
13:31:08 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
13:31:08 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
13:31:08 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
13:31:08 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.3	26 February 2026	70fd9b72a9834f1af4852c1e5b5676c57a2c360e
13:31:08 Jar:        lib/server/ome-common.jar      OME Common Java	6.2.1	27 February 2026	a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
13:31:08 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5	30 June 2025	257a1c1410c0103485248d05752a5174262a38b6
13:31:08 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4	25 June 2025	57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
13:31:08 Jar:        lib/server/ome-poi.jar         OME POI	5.3.11	11 November 2025	a2f3944ac71db9e7e51a6f64ec46beeb60613afb
13:31:08 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.3	22 January 2026	21d1362abd9ce26e13888d2b2d028753d21ac96e
13:31:09 Jar:        lib/server/omero-blitz.jar     jar	5.8.6-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-common.jar    jar	5.7.6-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-gateway.jar   jar	5.11.1-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-model.jar     jar	5.7.6-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-renderer.jar  jar	5.6.6-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-romio.jar     jar	5.8.6-SNAPSHOT		
13:31:09 Jar:        lib/server/omero-server.jar    jar	5.7.6-SNAPSHOT		
13:31:09 + deactivate
13:31:09 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
13:31:09 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:31:09 + export PATH
13:31:09 + unset _OLD_VIRTUAL_PATH
13:31:09 + '[' -n '' ']'
13:31:09 + hash -r
13:31:09 + '[' -n '' ']'
13:31:09 + unset VIRTUAL_ENV
13:31:09 + unset VIRTUAL_ENV_PROMPT
13:31:09 + '[' '!' '' = nondestructive ']'
13:31:09 + unset -f deactivate
13:31:09 Finished: SUCCESS