01:01:41 Started by upstream project "Trigger" build number 328
01:01:41 originally caused by:
01:01:41 Started by timer
01:01:41 Running as SYSTEM
01:01:41 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:01:41 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10385042881684609179.sh
01:01:41 + source /home/settings.env
01:01:41 ++ OMERO_DB_HOST=pg
01:01:41 ++ OMERO_DB_USER=postgres
01:01:41 ++ OMERO_DB_PASS=
01:01:41 ++ OMERO_ROOT_PASS=omero
01:01:41 ++ OMERO_DATA_DIR=/OMERO
01:01:41 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:01:41 + OMERO_DB_NAME=OMERO-server
01:01:41 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:01:41 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:01:41 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:01:41 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:01:41 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:01:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:01:42 ++ deactivate nondestructive
01:01:42 ++ '[' -n '' ']'
01:01:42 ++ '[' -n '' ']'
01:01:42 ++ '[' -n /bin/bash -o -n '' ']'
01:01:42 ++ hash -r
01:01:42 ++ '[' -n '' ']'
01:01:42 ++ unset VIRTUAL_ENV
01:01:42 ++ '[' '!' nondestructive = nondestructive ']'
01:01:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:01:42 ++ export VIRTUAL_ENV
01:01:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:01:42 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:01:42 ++ export PATH
01:01:42 ++ '[' -n '' ']'
01:01:42 ++ '[' -z '' ']'
01:01:42 ++ _OLD_VIRTUAL_PS1=
01:01:42 ++ PS1='(.venv3) '
01:01:42 ++ export PS1
01:01:42 ++ '[' -n /bin/bash -o -n '' ']'
01:01:42 ++ hash -r
01:01:42 + omero admin stop
01:02:00 Waiting on shutdown. Use CTRL-C to exit
01:02:00 .+ sleep 5
01:02:16 + deactivate
01:02:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:02:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:02:16 + export PATH
01:02:16 + unset _OLD_VIRTUAL_PATH
01:02:16 + '[' -n '' ']'
01:02:16 + '[' -n /bin/bash -o -n '' ']'
01:02:16 + hash -r
01:02:16 + '[' -n '' ']'
01:02:16 + unset VIRTUAL_ENV
01:02:16 + '[' '!' '' = nondestructive ']'
01:02:16 + unset -f deactivate
01:02:16 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:02:17 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:02:23 + '[' false = true ']'
01:02:23 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:02:23 Skipping PURGE_DATA:CleanDbAndRepo
01:02:23 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.28.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:02:26 Copied 1 artifact from "OMERO-build" build number 280
01:02:26 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 276
01:02:26 Copied 2 artifacts from "OMERO-build-build" build number 287
01:02:26 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7516263343772647910.sh
01:02:26 + source /home/settings.env
01:02:26 ++ OMERO_DB_HOST=pg
01:02:26 ++ OMERO_DB_USER=postgres
01:02:26 ++ OMERO_DB_PASS=
01:02:26 ++ OMERO_ROOT_PASS=omero
01:02:26 ++ OMERO_DATA_DIR=/OMERO
01:02:26 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:02:26 + OMERO_DB_NAME=OMERO-server
01:02:26 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:02:26 + mkdir -p /home/omero/omero-server-data
01:02:26 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:02:26 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:02:26 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:02:26 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:02:26 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:02:26 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:02:26 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:02:26 ++ ls OMERO.server-5.6.3-531-4dcae468a5-ice36.zip
01:02:26 + ZIP=OMERO.server-5.6.3-531-4dcae468a5-ice36.zip
01:02:26 + '[' '!' -z '' ']'
01:02:26 + DIST=OMERO.server-5.6.3-531-4dcae468a5-ice36
01:02:26 + unzip OMERO.server-5.6.3-531-4dcae468a5-ice36.zip
01:02:26 Archive: OMERO.server-5.6.3-531-4dcae468a5-ice36.zip
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/blitz/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/grid/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/profiles/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/error/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/grid/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/janelia/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/matplotlib/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/ncsa_paledit/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/seaborn/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/luts/wcif/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/analysis_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/annotation_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/export_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/figure_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/import_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/scripts/omero/util_scripts/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/server/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/share/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/share/licenses/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/misc/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__1/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__10/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__11/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__2/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__3/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__4/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__5/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__6/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__7/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__8/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3A__9/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3__4/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3__5/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3__6/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO3__7/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4.1__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4.2__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4.2__0/t/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4.3__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4.4__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO4__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.0__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.1__1/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.2__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.3__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4DEV__1/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4DEV__2/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4DEV__3/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/
01:02:26 creating: OMERO.server-5.6.3-531-4dcae468a5-ice36/var/
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/LICENSE.txt
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/backup.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/blitz/mail-senders.example
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/blitz/mail-server.example
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/build.properties
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/env.bat
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/env.sh
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/hibernate.properties
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/ice.config
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/logback-cli.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/logback-indexing-cli.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/logback-indexing.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/logback.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/mime.types
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/node1.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/node2.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/omero.properties
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/profiles/psql
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/rollover.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/Windows.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/error/maintainance.html
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/grid/README
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/grid/default.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/grid/templates.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/grid/windefault.xml
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/ice.config
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/internal.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/master.cfg
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/templates/robot.template
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/etc/testdropbox.config
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/history.rst
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/OMEZarrReader.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/activation.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aggdesigner-algorithm.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aircompressor.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/annotations.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/antlr.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aopalliance.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/avatica-core.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/avatica-metrics.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aws-java-sdk-core.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aws-java-sdk-kms.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/aws-java-sdk-s3.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/base.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-all.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-anim.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-awt-util.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-bridge.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-codec.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-constants.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-css.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-dom.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-ext.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-extension.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-gui-util.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-gvt.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-i18n.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-parser.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-rasterizer-ext.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-rasterizer.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-script.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-slideshow.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-squiggle-ext.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-squiggle.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-svg-dom.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-svgbrowser.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-svggen.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-svgpp.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-svgrasterizer.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-swing.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-transcoder.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-ttf2svg.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-util.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/batik-xml.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/btm.jar
01:02:26 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/lib/client/bufr.jar
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01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/schema.sql
01:02:29 inflating: OMERO.server-5.6.3-531-4dcae468a5-ice36/sql/psql/OMERO5.4__0/views.sql
01:02:29 + rm -f OMERO.server-5.6.3-531-4dcae468a5-ice36.zip
01:02:29 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-531-4dcae468a5-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:02:29 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:02:29 ++ deactivate nondestructive
01:02:29 ++ '[' -n '' ']'
01:02:29 ++ '[' -n '' ']'
01:02:29 ++ '[' -n /bin/bash -o -n '' ']'
01:02:29 ++ hash -r
01:02:29 ++ '[' -n '' ']'
01:02:29 ++ unset VIRTUAL_ENV
01:02:29 ++ '[' '!' nondestructive = nondestructive ']'
01:02:29 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:02:29 ++ export VIRTUAL_ENV
01:02:29 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:02:29 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:02:29 ++ export PATH
01:02:29 ++ '[' -n '' ']'
01:02:29 ++ '[' -z '' ']'
01:02:29 ++ _OLD_VIRTUAL_PS1=
01:02:29 ++ PS1='(.venv3) '
01:02:29 ++ export PS1
01:02:29 ++ '[' -n /bin/bash -o -n '' ']'
01:02:29 ++ hash -r
01:02:29 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:02:29 Collecting zeroc-ice==3.6.5
01:02:30 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:02:32 Installing collected packages: zeroc-ice
01:02:34 Successfully installed zeroc-ice-3.6.5
01:02:34 + pip install -U pip future
01:02:34 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:02:34 Collecting pip
01:02:34 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
01:02:34 Collecting future
01:02:35 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:02:35 Installing collected packages: pip, future
01:02:35 Attempting uninstall: pip
01:02:35 Found existing installation: pip 21.2.3
01:02:35 Uninstalling pip-21.2.3:
01:02:35 Successfully uninstalled pip-21.2.3
01:02:36 Successfully installed future-1.0.0 pip-24.3.1
01:02:36 + pip install markdown
01:02:37 Collecting markdown
01:02:37 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:02:37 Collecting importlib-metadata>=4.4 (from markdown)
01:02:37 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:02:38 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:02:38 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
01:02:38 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:02:38 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:02:38 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
01:02:38 Installing collected packages: zipp, importlib-metadata, markdown
01:02:38 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.21.0
01:02:38 + pip install reportlab
01:02:39 Collecting reportlab
01:02:39 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB)
01:02:39 Collecting pillow>=9.0.0 (from reportlab)
01:02:39 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:02:39 Collecting chardet (from reportlab)
01:02:39 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:02:39 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB)
01:02:39 Using cached pillow-11.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.4 MB)
01:02:40 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:02:40 Installing collected packages: pillow, chardet, reportlab
01:02:41 Successfully installed chardet-5.2.0 pillow-11.0.0 reportlab-4.2.5
01:02:41 + pip install omego
01:02:42 Collecting omego
01:02:42 Using cached omego-0.7.0-py3-none-any.whl
01:02:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
01:02:42 Collecting yaclifw>=0.1.1 (from omego)
01:02:42 Using cached yaclifw-0.2.0-py3-none-any.whl
01:02:42 Collecting six (from yaclifw>=0.1.1->omego)
01:02:42 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:02:42 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:02:42 Installing collected packages: six, yaclifw, omego
01:02:42 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
01:02:43 + pip install tables
01:02:43 Collecting tables
01:02:43 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:02:44 Collecting numpy>=1.19.0 (from tables)
01:02:44 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:02:44 Collecting numexpr>=2.6.2 (from tables)
01:02:44 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
01:02:44 Collecting packaging (from tables)
01:02:44 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
01:02:45 Collecting py-cpuinfo (from tables)
01:02:45 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:02:45 Collecting blosc2>=2.3.0 (from tables)
01:02:45 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:02:45 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:02:45 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:02:45 Collecting msgpack (from blosc2>=2.3.0->tables)
01:02:45 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:02:45 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:02:46 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:02:46 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
01:02:46 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:02:46 Using cached packaging-24.2-py3-none-any.whl (65 kB)
01:02:46 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:02:46 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:02:47 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:02:47 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:02:50 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
01:02:51 + pip install jinja2
01:02:51 Collecting jinja2
01:02:51 Using cached jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB)
01:02:51 Collecting MarkupSafe>=2.0 (from jinja2)
01:02:52 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:02:52 Using cached jinja2-3.1.5-py3-none-any.whl (134 kB)
01:02:52 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:02:52 Installing collected packages: MarkupSafe, jinja2
01:02:52 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.5
01:02:52 + pip install omero-py
01:02:53 Collecting omero-py
01:02:53 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:02:53 Collecting urllib3<2 (from omero-py)
01:02:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:02:53 Collecting appdirs (from omero-py)
01:02:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:02:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:02:53 Collecting numpy<2 (from omero-py)
01:02:53 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:02:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.0.0)
01:02:54 Collecting PyYAML (from omero-py)
01:02:54 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:02:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:02:54 Collecting requests (from omero-py)
01:02:54 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:02:54 Collecting portalocker (from omero-py)
01:02:54 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:02:54 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:02:54 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:02:55 Collecting idna<4,>=2.5 (from requests->omero-py)
01:02:55 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:02:55 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:02:55 Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
01:02:55 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:02:55 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:02:55 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:02:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:02:55 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:02:55 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:02:55 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:02:55 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
01:02:56 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
01:02:56 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:02:56 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
01:02:56 Attempting uninstall: numpy
01:02:56 Found existing installation: numpy 2.0.2
01:02:56 Uninstalling numpy-2.0.2:
01:02:56 Successfully uninstalled numpy-2.0.2
01:03:01 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.12.14 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
01:03:01 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:03:01 Collecting omero-metadata
01:03:01 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-8jftvryz/omero-metadata_6058050ed01c4ab3be0ca902dc084a3f
01:03:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-8jftvryz/omero-metadata_6058050ed01c4ab3be0ca902dc084a3f
01:03:04 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit bc3d69181e430ffdaebf7bf8d292d7e64d39cdfd
01:03:04 Installing build dependencies: started
01:03:06 Installing build dependencies: finished with status 'done'
01:03:06 Getting requirements to build wheel: started
01:03:06 Getting requirements to build wheel: finished with status 'done'
01:03:06 Preparing metadata (pyproject.toml): started
01:03:07 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
01:03:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
01:03:07 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.5)
01:03:07 Collecting pandas (from omero-metadata)
01:03:07 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:03:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:03:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:03:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:03:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:03:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.0.0)
01:03:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:03:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:03:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
01:03:07 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
01:03:07 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:03:07 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:03:08 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:03:08 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:03:08 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:03:08 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
01:03:08 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:03:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
01:03:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:03:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.12.14)
01:03:08 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:03:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:03:08 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:03:08 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB)
01:03:08 Building wheels for collected packages: omero-metadata
01:03:08 Building wheel for omero-metadata (pyproject.toml): started
01:03:09 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:03:09 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39188 sha256=625fd44ac34391bba502bdac211f4763f7b9e12bc5710414d5d4c5b0cc25a0e6
01:03:09 Stored in directory: /tmp/pip-ephem-wheel-cache-v1cv11ib/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
01:03:09 Successfully built omero-metadata
01:03:09 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:03:14 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2
01:03:15 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:03:15 Collecting omero-cli-render
01:03:15 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-_nloa80p/omero-cli-render_1d0141d2d4ee4f20b1ff9e0386aa7956
01:03:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-_nloa80p/omero-cli-render_1d0141d2d4ee4f20b1ff9e0386aa7956
01:03:16 Running command git checkout -b merge_ci --track origin/merge_ci
01:03:16 Switched to a new branch 'merge_ci'
01:03:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:03:16 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit be3828e16335321cdb35fb96aedf0af0c33fc9cd
01:03:16 Installing build dependencies: started
01:03:19 Installing build dependencies: finished with status 'done'
01:03:19 Getting requirements to build wheel: started
01:03:19 Getting requirements to build wheel: finished with status 'done'
01:03:19 Preparing metadata (pyproject.toml): started
01:03:19 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
01:03:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
01:03:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:03:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:03:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:03:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:03:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.0.0)
01:03:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:03:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:03:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
01:03:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
01:03:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:03:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.12.14)
01:03:19 Building wheels for collected packages: omero-cli-render
01:03:19 Building wheel for omero-cli-render (pyproject.toml): started
01:03:20 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:03:20 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19513 sha256=fdf44e3038b1e1bf88565d9329276d607336c07428be2d48641592fc898edfc7
01:03:20 Stored in directory: /tmp/pip-ephem-wheel-cache-hc6c_hix/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
01:03:20 Successfully built omero-cli-render
01:03:21 Installing collected packages: omero-cli-render
01:03:21 Successfully installed omero-cli-render-0.8.2.dev0
01:03:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:03:21 Collecting omero-cli-duplicate
01:03:21 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-plv02g21/omero-cli-duplicate_e01e2e4e82304d5babd27cd6d616cafb
01:03:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-plv02g21/omero-cli-duplicate_e01e2e4e82304d5babd27cd6d616cafb
01:03:22 Running command git checkout -b merge_ci --track origin/merge_ci
01:03:22 Switched to a new branch 'merge_ci'
01:03:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:03:22 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1ad5af8fb8ebf0c17ad2b3e8dfb6de7380141037
01:03:22 Installing build dependencies: started
01:03:24 Installing build dependencies: finished with status 'done'
01:03:24 Getting requirements to build wheel: started
01:03:24 Getting requirements to build wheel: finished with status 'done'
01:03:24 Preparing metadata (pyproject.toml): started
01:03:25 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:25 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
01:03:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:03:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:03:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:03:25 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:03:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.0.0)
01:03:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:03:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:03:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:03:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
01:03:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
01:03:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:03:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.12.14)
01:03:25 Building wheels for collected packages: omero-cli-duplicate
01:03:25 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:03:25 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:03:25 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=bfc098e1310071a710d84d1f3642fb94baffcfc24f24435b06808738b9134604
01:03:25 Stored in directory: /tmp/pip-ephem-wheel-cache-w8v6tvin/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:03:25 Successfully built omero-cli-duplicate
01:03:25 Installing collected packages: omero-cli-duplicate
01:03:25 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:03:25 + pip install omero-certificates
01:03:26 Collecting omero-certificates
01:03:26 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:03:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
01:03:26 Collecting distro==1.8.0 (from omero-certificates)
01:03:26 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:03:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:03:26 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:03:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:03:26 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:03:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.0.0)
01:03:26 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:03:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:03:26 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:03:26 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
01:03:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
01:03:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:03:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.12.14)
01:03:26 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:03:26 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:03:26 Installing collected packages: distro, omero-certificates
01:03:26 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:03:26 + for x in *.tar.gz
01:03:26 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:03:27 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:03:27 Installing build dependencies: started
01:03:28 Installing build dependencies: finished with status 'done'
01:03:28 Getting requirements to build wheel: started
01:03:29 Getting requirements to build wheel: finished with status 'done'
01:03:29 Preparing metadata (pyproject.toml): started
01:03:29 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:29 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:03:29 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:03:29 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:03:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:03:29 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:03:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.0.0)
01:03:29 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:03:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:03:29 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:03:29 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
01:03:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
01:03:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:03:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.12.14)
01:03:29 Building wheels for collected packages: omero-dropbox
01:03:29 Building wheel for omero-dropbox (pyproject.toml): started
01:03:29 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:03:29 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=09b710634bb35d59c809206b17eed5fdff5fa0d0d59f0b929081883258931792
01:03:29 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
01:03:29 Successfully built omero-dropbox
01:03:29 Installing collected packages: omero-dropbox
01:03:29 Successfully installed omero-dropbox-5.7.1.dev0
01:03:29 + for x in *.tar.gz
01:03:29 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:03:30 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:03:30 Installing build dependencies: started
01:03:32 Installing build dependencies: finished with status 'done'
01:03:32 Getting requirements to build wheel: started
01:03:32 Getting requirements to build wheel: finished with status 'done'
01:03:32 Preparing metadata (pyproject.toml): started
01:03:33 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:33 Building wheels for collected packages: omero_marshal
01:03:33 Building wheel for omero_marshal (pyproject.toml): started
01:03:33 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:03:33 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88032 sha256=2ba8e516beebb22ff1ed29cff915101a1db08738dd0324365d36303f18dee488
01:03:33 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
01:03:33 Successfully built omero_marshal
01:03:33 Installing collected packages: omero_marshal
01:03:33 Successfully installed omero_marshal-0.9.1.dev0
01:03:34 + for x in *.tar.gz
01:03:34 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:03:34 Processing ./omero_py-5.19.6.dev0.tar.gz
01:03:34 Installing build dependencies: started
01:03:37 Installing build dependencies: finished with status 'done'
01:03:37 Getting requirements to build wheel: started
01:03:37 Getting requirements to build wheel: finished with status 'done'
01:03:37 Preparing metadata (pyproject.toml): started
01:03:38 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:03:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:03:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:03:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:03:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (11.0.0)
01:03:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:03:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:03:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:03:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.1.1)
01:03:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.4.1)
01:03:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:03:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.12.14)
01:03:38 Building wheels for collected packages: omero-py
01:03:38 Building wheel for omero-py (pyproject.toml): started
01:03:39 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:03:39 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783250 sha256=f2176854d7d9bff5ec56fe60381ff185be1778350723fe555814eb64c8df6a41
01:03:39 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
01:03:39 Successfully built omero-py
01:03:39 Installing collected packages: omero-py
01:03:39 Attempting uninstall: omero-py
01:03:39 Found existing installation: omero-py 5.19.5
01:03:39 Uninstalling omero-py-5.19.5:
01:03:40 Successfully uninstalled omero-py-5.19.5
01:03:42 Successfully installed omero-py-5.19.6.dev0
01:03:42 + for x in *.tar.gz
01:03:42 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
01:03:43 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:03:43 Installing build dependencies: started
01:03:45 Installing build dependencies: finished with status 'done'
01:03:45 Getting requirements to build wheel: started
01:03:46 Getting requirements to build wheel: finished with status 'done'
01:03:46 Preparing metadata (pyproject.toml): started
01:03:46 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:46 Building wheels for collected packages: omero-scripts
01:03:46 Building wheel for omero-scripts (pyproject.toml): started
01:03:46 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:03:46 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136799 sha256=25c1e1ce0492312389259053b1593b133b414eb70336f68fe805078a97c2162f
01:03:46 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
01:03:46 Successfully built omero-scripts
01:03:46 Installing collected packages: omero-scripts
01:03:46 Successfully installed omero-scripts-5.9.1.dev0
01:03:46 + for x in *.tar.gz
01:03:46 + pip install -U omero_web-5.28.1.dev0.tar.gz
01:03:47 Processing ./omero_web-5.28.1.dev0.tar.gz
01:03:47 Installing build dependencies: started
01:03:49 Installing build dependencies: finished with status 'done'
01:03:49 Getting requirements to build wheel: started
01:03:50 Getting requirements to build wheel: finished with status 'done'
01:03:50 Preparing metadata (pyproject.toml): started
01:03:50 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:50 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (5.19.6.dev0)
01:03:50 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.28.1.dev0)
01:03:50 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:03:50 Collecting Django<4.3,>=4.2.3 (from omero-web==5.28.1.dev0)
01:03:50 Using cached Django-4.2.17-py3-none-any.whl.metadata (4.1 kB)
01:03:51 Collecting django-pipeline (from omero-web==5.28.1.dev0)
01:03:51 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:03:51 Collecting django-cors-headers==3.7.0 (from omero-web==5.28.1.dev0)
01:03:51 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:03:51 Collecting django-csp (from omero-web==5.28.1.dev0)
01:03:51 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:03:51 Collecting whitenoise>=5.3.0 (from omero-web==5.28.1.dev0)
01:03:51 Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB)
01:03:51 Collecting gunicorn>=19.3 (from omero-web==5.28.1.dev0)
01:03:51 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:03:51 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (0.9.1.dev0)
01:03:51 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (11.0.0)
01:03:51 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (2024.2)
01:03:51 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (3.1.1)
01:03:51 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (24.2)
01:03:51 Collecting importlib-resources (from omero-web==5.28.1.dev0)
01:03:51 Using cached importlib_resources-6.4.5-py3-none-any.whl.metadata (4.0 kB)
01:03:52 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:03:52 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:03:52 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:03:52 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:03:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.20)
01:03:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.4.4)
01:03:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.0.0)
01:03:52 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.4)
01:03:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (6.0.2)
01:03:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.6.5)
01:03:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (2.32.3)
01:03:52 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.28.1.dev0) (53.0.0)
01:03:52 Collecting wheel (from django-pipeline->omero-web==5.28.1.dev0)
01:03:52 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:03:52 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.28.1.dev0) (3.21.0)
01:03:52 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:03:52 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:03:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.4.1)
01:03:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.10)
01:03:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (2024.12.14)
01:03:52 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:03:53 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:03:53 Using cached Django-4.2.17-py3-none-any.whl (8.0 MB)
01:03:53 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:03:53 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB)
01:03:53 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:03:54 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:03:54 Using cached importlib_resources-6.4.5-py3-none-any.whl (36 kB)
01:03:54 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:03:54 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:03:54 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:03:54 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:03:54 Building wheels for collected packages: omero-web
01:03:54 Building wheel for omero-web (pyproject.toml): started
01:03:55 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:03:55 Created wheel for omero-web: filename=omero_web-5.28.1.dev0-py3-none-any.whl size=2771008 sha256=d734d14802ed11a657cdd38bddb9ceb54e2e0f4192bb976f3db47615483d8a91
01:03:55 Stored in directory: /home/omero/.cache/pip/wheels/97/1e/88/508867809512b265cdeb53be905e01f64ea0b8d6c0b64f8ebd
01:03:55 Successfully built omero-web
01:03:55 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
01:03:58 Successfully installed Django-4.2.17 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.4.5 omero-web-5.28.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.8.2
01:03:59 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:04:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:04:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:04:00 --2025-01-02 01:04:00-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:04:00 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
01:04:00 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
01:04:00 HTTP request sent, awaiting response... 200 OK
01:04:01 Length: 102311 (100K) [text/plain]
01:04:01 Saving to: ‘Figure_To_Pdf.py’
01:04:01
01:04:01 0K .......... .......... .......... .......... .......... 50% 3.51M 0s
01:04:01 50K .......... .......... .......... .......... ......... 100% 5.40M=0.02s
01:04:01
01:04:01 2025-01-02 01:04:01 (4.25 MB/s) - ‘Figure_To_Pdf.py’ saved [102311/102311]
01:04:01
01:04:01 + chmod 755 Figure_To_Pdf.py
01:04:01 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:04:01 + omero config set omero.db.name OMERO-server
01:04:02 + omero config set omero.db.host pg
01:04:04 + omero config set omero.db.user postgres
01:04:05 + omero config set omero.data.dir /home/omero/omero-server-data
01:04:06 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:04:08 + omero config set omero.db.poolsize 25
01:04:09 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:04:11 + omero config set omero.security.trustStorePassword changeit
01:04:12 + omero config set omero.mail.config true
01:04:14 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:04:15 + omero config set omero.mail.host smtp.dundee.ac.uk
01:04:17 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:04:18 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:04:19 + omero certificates
01:04:21 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:04:21 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:04:21 + '[' false = true ']'
01:04:21 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:04:21 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:04:21 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:04:21 2025-01-02 01:04:21,901 [ omego.db] DEBUG dbcommand => upgrade
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG dbhost => localhost
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG dbname => OMERO-server
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG dbpass => omero
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG dbuser => omero
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG rootpass => omero
01:04:21 2025-01-02 01:04:21,902 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:04:21 2025-01-02 01:04:21,902 [omego.extern] INFO Executing : omero version
01:04:23 OMERO.py version:
01:04:23 OMERO.server version:
01:04:23 5.6.3-531-4dcae468a5-ice36
01:04:23 5.19.6.dev0
01:04:23 2025-01-02 01:04:23,399 [omego.extern] INFO Completed [1.497 s]
01:04:23 2025-01-02 01:04:23,399 [omego.extern] DEBUG Using omero CLI from omero
01:04:23 2025-01-02 01:04:23,399 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:04:23 2025-01-02 01:04:23,399 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:04:23 2025-01-02 01:04:23,399 [omego.extern] INFO Executing : omero config get --show-password
01:04:24 2025-01-02 01:04:24,841 [omego.extern] INFO Completed [1.442 s]
01:04:24 2025-01-02 01:04:24,842 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:04:24 2025-01-02 01:04:24,842 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:04:25 2025-01-02 01:04:25,657 [omego.extern] INFO Completed [0.815 s]
01:04:25 2025-01-02 01:04:25,657 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
01:04:25 2025-01-02 01:04:25,657 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
01:04:25
01:04:25 2025-01-02 01:04:25,657 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:04:25 2025-01-02 01:04:25,657 [omego.extern] INFO Executing : omero config get --show-password
01:04:27 2025-01-02 01:04:27,067 [omego.extern] INFO Completed [1.409 s]
01:04:27 2025-01-02 01:04:27,067 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:04:27 2025-01-02 01:04:27,067 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:04:27 2025-01-02 01:04:27,238 [omego.extern] INFO Completed [0.171 s]
01:04:27 2025-01-02 01:04:27,238 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
01:04:27 2025-01-02 01:04:27,238 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:04:27 2025-01-02 01:04:27,238 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:04:27 2025-01-02 01:04:27,238 [omego.extern] INFO Executing : omero config get --show-password
01:04:28 2025-01-02 01:04:28,600 [omego.extern] INFO Completed [1.361 s]
01:04:28 2025-01-02 01:04:28,600 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:04:28 2025-01-02 01:04:28,600 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:04:29 2025-01-02 01:04:29,003 [omego.extern] INFO Completed [0.402 s]
01:04:29 2025-01-02 01:04:29,003 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:04:29 2025-01-02 01:04:29,003 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
01:04:29 2025-01-02 01:04:29,005 [ omego.db] INFO Database is already at OMERO5.4__0
01:04:29 + export LANG=en_US.UTF-8
01:04:29 + LANG=en_US.UTF-8
01:04:29 + export LANGUAGE=en_US:en
01:04:29 + LANGUAGE=en_US:en
01:04:29 + export LC_ALL=en_US.UTF-8
01:04:29 + LC_ALL=en_US.UTF-8
01:04:29 + BUILD_ID=DONT_KILL_ME
01:04:29 + omero admin start
01:04:40 No descriptor given. Using etc/grid/default.xml
01:04:54 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:04:54 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:04:54 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:04:54 Waiting on startup. Use CTRL-C to exit
01:04:54 + omero admin waitup
01:04:55 Waiting on startup. Use CTRL-C to exit
01:04:56 + omero admin diagnostics
01:04:57
01:04:57 ================================================================================
01:04:57 OMERO Diagnostics (admin)
01:04:57 ================================================================================
01:04:57
01:04:57 Commands: java -version 11.0.24 (/usr/bin/java)
01:04:57 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:04:57 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:04:57 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:04:57 Commands: psql --version 16.4 (/usr/bin/psql)
01:04:57 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:04:57
01:04:57 Component: OMERO.py 5.19.6.dev0
01:04:57 Component: OMERO.server 5.6.3-531-4dcae468a5-ice36
01:04:57
01:04:57 Server: icegridnode running
01:04:57 Server: Blitz-0 active (pid = 13617, enabled)
01:04:57 Server: Indexer-0 activating (enabled)
01:04:57 Server: OMERO.Glacier2 active (pid = 13650, enabled)
01:04:57 Server: OMERO.IceStorm active (pid = 13661, enabled)
01:04:57 Server: Processor-0 activating (enabled)
01:04:57 Server: Tables-0 activating (enabled)
01:04:57
01:04:57 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:04:57 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
01:04:57 Log files: DropBox.log n/a
01:04:57 Log files: FileServer.log n/a
01:04:57 Log files: Indexer-0.log 2.4 KB
01:04:57 Log files: MonitorServer.log n/a
01:04:57 Log files: Processor-0.log 592 B
01:04:57 Log files: Tables-0.log 841 B
01:04:57 Log files: TestDropBox.log n/a
01:04:57 Log files: master.err 180 B
01:04:57 Log files: master.out 30.1 KB
01:04:57 Log files: Total size 0.06 MB
01:04:57
01:04:57
01:04:57 Environment:OMERO_HOME=(unset)
01:04:57 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:04:57 Environment:OMERO_NODE=(unset)
01:04:57 Environment:OMERO_MASTER=(unset)
01:04:57 Environment:OMERO_USERDIR=(unset)
01:04:57 Environment:OMERO_TMPDIR=(unset)
01:04:57 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:57 Environment:PYTHONPATH=(unset)
01:04:57 Environment:ICE_HOME=/opt/ice-3.6.5
01:04:57 Environment:LD_LIBRARY_PATH=(unset)
01:04:57 Environment:DYLD_LIBRARY_PATH=(unset)
01:04:58
01:04:58 OMERO SSL port:4064
01:04:58 OMERO TCP port:4063
01:04:58 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
01:04:58 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
01:04:58
01:04:58 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:04:58 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:04:58 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:04:58 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:04:58
01:04:58 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 2 January 2025 a06f8280a585aa90ddb2c7c05c6b22ccc9f1d807
01:04:58 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 2 January 2025 a06f8280a585aa90ddb2c7c05c6b22ccc9f1d807
01:04:58 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 2 January 2025 a06f8280a585aa90ddb2c7c05c6b22ccc9f1d807
01:04:58 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 2 January 2025 24bdc921cfdbb385bb2ae10ba73f15ce6cd29ccf
01:04:58 Jar: lib/server/omero-blitz.jar jar 5.8.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-common.jar jar 5.7.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-gateway.jar jar 5.10.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-model.jar jar 5.7.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-renderer.jar jar 5.6.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-romio.jar jar 5.8.1-SNAPSHOT
01:04:58 Jar: lib/server/omero-server.jar jar 5.7.1-SNAPSHOT
01:04:58 + deactivate
01:04:58 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:04:58 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:04:58 + export PATH
01:04:58 + unset _OLD_VIRTUAL_PATH
01:04:58 + '[' -n '' ']'
01:04:58 + '[' -n /bin/bash -o -n '' ']'
01:04:58 + hash -r
01:04:58 + '[' -n '' ']'
01:04:58 + unset VIRTUAL_ENV
01:04:58 + '[' '!' '' = nondestructive ']'
01:04:58 + unset -f deactivate
01:04:58 Finished: SUCCESS
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