10:32:17 Started by upstream project "Trigger" build number 341
10:32:17 originally caused by:
10:32:17 Started by user devspace
10:32:17 Running as SYSTEM
10:32:18 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:32:20 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9039551168494126746.sh
10:32:21 + source /home/settings.env
10:32:21 ++ OMERO_DB_HOST=pg
10:32:21 ++ OMERO_DB_USER=postgres
10:32:21 ++ OMERO_DB_PASS=
10:32:21 ++ OMERO_ROOT_PASS=omero
10:32:21 ++ OMERO_DATA_DIR=/OMERO
10:32:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:32:21 + OMERO_DB_NAME=OMERO-server
10:32:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:32:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:32:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:32:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:32:21 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:32:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:32:21 ++ deactivate nondestructive
10:32:21 ++ '[' -n '' ']'
10:32:21 ++ '[' -n '' ']'
10:32:21 ++ '[' -n /bin/bash -o -n '' ']'
10:32:21 ++ hash -r
10:32:21 ++ '[' -n '' ']'
10:32:21 ++ unset VIRTUAL_ENV
10:32:21 ++ '[' '!' nondestructive = nondestructive ']'
10:32:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:32:21 ++ export VIRTUAL_ENV
10:32:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:32:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:32:21 ++ export PATH
10:32:21 ++ '[' -n '' ']'
10:32:21 ++ '[' -z '' ']'
10:32:21 ++ _OLD_VIRTUAL_PS1=
10:32:21 ++ PS1='(.venv3) '
10:32:21 ++ export PS1
10:32:21 ++ '[' -n /bin/bash -o -n '' ']'
10:32:21 ++ hash -r
10:32:21 + omero admin stop
10:32:41 Waiting on shutdown. Use CTRL-C to exit
10:32:41 .+ sleep 5
10:32:57 + deactivate
10:32:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:32:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:32:57 + export PATH
10:32:57 + unset _OLD_VIRTUAL_PATH
10:32:57 + '[' -n '' ']'
10:32:57 + '[' -n /bin/bash -o -n '' ']'
10:32:57 + hash -r
10:32:57 + '[' -n '' ']'
10:32:57 + unset VIRTUAL_ENV
10:32:57 + '[' '!' '' = nondestructive ']'
10:32:57 + unset -f deactivate
10:32:57 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:32:57 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
10:33:04 + '[' false = true ']'
10:33:04 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:33:04 Skipping PURGE_DATA:CleanDbAndRepo
10:33:04 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.28.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:33:30 Copied 1 artifact from "OMERO-build" build number 291
10:33:30 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 287
10:33:30 Copied 2 artifacts from "OMERO-build-build" build number 299
10:33:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6169034492742034565.sh
10:33:30 + source /home/settings.env
10:33:30 ++ OMERO_DB_HOST=pg
10:33:30 ++ OMERO_DB_USER=postgres
10:33:30 ++ OMERO_DB_PASS=
10:33:30 ++ OMERO_ROOT_PASS=omero
10:33:30 ++ OMERO_DATA_DIR=/OMERO
10:33:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:33:30 + OMERO_DB_NAME=OMERO-server
10:33:30 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:33:30 + mkdir -p /home/omero/omero-server-data
10:33:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:33:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:33:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:33:30 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:33:30 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:33:30 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:33:30 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:33:30 ++ ls OMERO.server-5.6.3-531-5d9812eafd-ice36.zip
10:33:30 + ZIP=OMERO.server-5.6.3-531-5d9812eafd-ice36.zip
10:33:30 + '[' '!' -z '' ']'
10:33:30 + DIST=OMERO.server-5.6.3-531-5d9812eafd-ice36
10:33:30 + unzip OMERO.server-5.6.3-531-5d9812eafd-ice36.zip
10:33:30 Archive: OMERO.server-5.6.3-531-5d9812eafd-ice36.zip
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/blitz/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/grid/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/profiles/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/error/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/grid/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/janelia/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/matplotlib/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/ncsa_paledit/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/seaborn/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/luts/wcif/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/analysis_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/annotation_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/export_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/figure_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/import_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/scripts/omero/util_scripts/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/server/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/share/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/share/licenses/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/misc/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__1/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__10/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__11/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__2/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__3/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__4/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__5/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__6/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__7/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__8/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3A__9/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3__4/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3__5/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3__6/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO3__7/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4.1__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4.2__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4.2__0/t/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4.3__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4.4__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO4__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.0__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.1__1/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.2__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__1/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__2/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__3/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/
10:33:30 creating: OMERO.server-5.6.3-531-5d9812eafd-ice36/var/
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/LICENSE.txt
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/backup.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/blitz/mail-senders.example
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/blitz/mail-server.example
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/build.properties
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/env.bat
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/env.sh
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/hibernate.properties
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/ice.config
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/logback-cli.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/logback-indexing-cli.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/logback-indexing.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/logback.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/mime.types
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/node1.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/node2.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/omero.properties
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/profiles/psql
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/rollover.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/Windows.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/error/maintainance.html
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/grid/README
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/grid/default.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/grid/templates.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/grid/windefault.xml
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/ice.config
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/internal.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/master.cfg
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/templates/robot.template
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/etc/testdropbox.config
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/history.rst
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/OMEZarrReader.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/activation.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aggdesigner-algorithm.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aircompressor.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/annotations.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/antlr.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aopalliance.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/avatica-core.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/avatica-metrics.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aws-java-sdk-core.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aws-java-sdk-kms.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/aws-java-sdk-s3.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/base.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-all.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-anim.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-awt-util.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-bridge.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-codec.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-constants.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-css.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-dom.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-ext.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-extension.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-gui-util.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-gvt.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-i18n.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-parser.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-rasterizer-ext.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-rasterizer.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-script.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-slideshow.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-squiggle-ext.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-squiggle.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-svg-dom.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-svgbrowser.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-svggen.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-svgpp.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-svgrasterizer.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-swing.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-transcoder.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-ttf2svg.jar
10:33:30 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/lib/client/batik-util.jar
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10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/psql-header.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/schema.sql
10:33:33 inflating: OMERO.server-5.6.3-531-5d9812eafd-ice36/sql/psql/OMERO5.4__0/views.sql
10:33:33 + rm -f OMERO.server-5.6.3-531-5d9812eafd-ice36.zip
10:33:33 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-531-5d9812eafd-ice36 /home/omero/workspace/OMERO-server/OMERO.server
10:33:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:33:33 ++ deactivate nondestructive
10:33:33 ++ '[' -n '' ']'
10:33:33 ++ '[' -n '' ']'
10:33:33 ++ '[' -n /bin/bash -o -n '' ']'
10:33:33 ++ hash -r
10:33:33 ++ '[' -n '' ']'
10:33:33 ++ unset VIRTUAL_ENV
10:33:33 ++ '[' '!' nondestructive = nondestructive ']'
10:33:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:33:33 ++ export VIRTUAL_ENV
10:33:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:33:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:33:33 ++ export PATH
10:33:33 ++ '[' -n '' ']'
10:33:33 ++ '[' -z '' ']'
10:33:33 ++ _OLD_VIRTUAL_PS1=
10:33:33 ++ PS1='(.venv3) '
10:33:33 ++ export PS1
10:33:33 ++ '[' -n /bin/bash -o -n '' ']'
10:33:33 ++ hash -r
10:33:33 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
10:33:33 Collecting zeroc-ice==3.6.5
10:33:34 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
10:33:36 Installing collected packages: zeroc-ice
10:33:38 Successfully installed zeroc-ice-3.6.5
10:33:38 + pip install -U pip future
10:33:38 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
10:33:39 Collecting pip
10:33:39 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
10:33:39 Collecting future
10:33:40 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:33:40 Installing collected packages: pip, future
10:33:40 Attempting uninstall: pip
10:33:40 Found existing installation: pip 21.2.3
10:33:40 Uninstalling pip-21.2.3:
10:33:40 Successfully uninstalled pip-21.2.3
10:33:41 Successfully installed future-1.0.0 pip-24.3.1
10:33:41 + pip install markdown
10:33:42 Collecting markdown
10:33:42 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
10:33:42 Collecting importlib-metadata>=4.4 (from markdown)
10:33:42 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
10:33:42 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
10:33:42 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
10:33:42 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
10:33:42 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
10:33:42 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
10:33:42 Installing collected packages: zipp, importlib-metadata, markdown
10:33:42 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.21.0
10:33:42 + pip install reportlab
10:33:43 Collecting reportlab
10:33:43 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB)
10:33:43 Collecting pillow>=9.0.0 (from reportlab)
10:33:43 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
10:33:43 Collecting chardet (from reportlab)
10:33:44 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
10:33:44 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB)
10:33:44 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
10:33:44 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
10:33:44 Installing collected packages: pillow, chardet, reportlab
10:33:45 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.2.5
10:33:45 + pip install omego
10:33:46 Collecting omego
10:33:46 Using cached omego-0.7.0-py3-none-any.whl
10:33:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
10:33:46 Collecting yaclifw>=0.1.1 (from omego)
10:33:46 Using cached yaclifw-0.2.0-py3-none-any.whl
10:33:46 Collecting six (from yaclifw>=0.1.1->omego)
10:33:46 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:33:46 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:33:46 Installing collected packages: six, yaclifw, omego
10:33:46 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
10:33:46 + pip install tables
10:33:47 Collecting tables
10:33:47 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
10:33:48 Collecting numpy>=1.19.0 (from tables)
10:33:48 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
10:33:48 Collecting numexpr>=2.6.2 (from tables)
10:33:48 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
10:33:48 Collecting packaging (from tables)
10:33:48 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
10:33:48 Collecting py-cpuinfo (from tables)
10:33:48 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:33:49 Collecting blosc2>=2.3.0 (from tables)
10:33:49 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
10:33:49 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
10:33:49 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
10:33:49 Collecting msgpack (from blosc2>=2.3.0->tables)
10:33:49 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
10:33:49 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
10:33:50 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
10:33:50 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
10:33:50 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
10:33:50 Using cached packaging-24.2-py3-none-any.whl (65 kB)
10:33:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
10:33:50 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
10:33:50 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
10:33:51 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
10:33:54 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
10:33:54 + pip install jinja2
10:33:55 Collecting jinja2
10:33:55 Using cached jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB)
10:33:55 Collecting MarkupSafe>=2.0 (from jinja2)
10:33:55 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
10:33:55 Using cached jinja2-3.1.5-py3-none-any.whl (134 kB)
10:33:55 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
10:33:55 Installing collected packages: MarkupSafe, jinja2
10:33:55 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.5
10:33:55 + pip install omero-py
10:33:56 Collecting omero-py
10:33:56 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB)
10:33:56 Collecting urllib3<2 (from omero-py)
10:33:56 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
10:33:56 Collecting appdirs (from omero-py)
10:33:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:33:56 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
10:33:57 Collecting numpy<2 (from omero-py)
10:33:57 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
10:33:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0)
10:33:57 Collecting PyYAML (from omero-py)
10:33:57 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
10:33:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
10:33:57 Collecting requests (from omero-py)
10:33:57 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
10:33:57 Collecting portalocker (from omero-py)
10:33:57 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
10:33:58 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
10:33:58 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
10:33:58 Collecting idna<4,>=2.5 (from requests->omero-py)
10:33:58 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
10:33:58 Collecting certifi>=2017.4.17 (from requests->omero-py)
10:33:58 Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
10:33:58 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB)
10:33:58 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
10:33:58 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
10:33:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:33:58 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
10:33:58 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
10:33:59 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
10:33:59 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
10:33:59 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
10:33:59 Using cached idna-3.10-py3-none-any.whl (70 kB)
10:33:59 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
10:33:59 Attempting uninstall: numpy
10:33:59 Found existing installation: numpy 2.0.2
10:33:59 Uninstalling numpy-2.0.2:
10:33:59 Successfully uninstalled numpy-2.0.2
10:34:04 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.12.14 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
10:34:04 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:34:04 Collecting omero-metadata
10:34:04 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-_ic6qhku/omero-metadata_a7d3821ef2c34a5481568884cba356f4
10:34:04 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-_ic6qhku/omero-metadata_a7d3821ef2c34a5481568884cba356f4
10:34:06 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2041849b935a11dfe01e02236143fada5b32cda6
10:34:06 Installing build dependencies: started
10:34:08 Installing build dependencies: finished with status 'done'
10:34:08 Getting requirements to build wheel: started
10:34:08 Getting requirements to build wheel: finished with status 'done'
10:34:08 Preparing metadata (pyproject.toml): started
10:34:08 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6)
10:34:08 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
10:34:08 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.5)
10:34:08 Collecting pandas (from omero-metadata)
10:34:08 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
10:34:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
10:34:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:34:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:34:09 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
10:34:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
10:34:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:34:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
10:34:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
10:34:09 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
10:34:09 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
10:34:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:34:09 Collecting pytz>=2020.1 (from pandas->omero-metadata)
10:34:09 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
10:34:09 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
10:34:09 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
10:34:09 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
10:34:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
10:34:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
10:34:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.12.14)
10:34:09 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
10:34:09 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:34:09 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
10:34:10 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB)
10:34:10 Building wheels for collected packages: omero-metadata
10:34:10 Building wheel for omero-metadata (pyproject.toml): started
10:34:10 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:34:10 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39249 sha256=5db7603478e55192a073d7276379f2f689a2af643f8b6170bf5bf3b88f34f9fc
10:34:10 Stored in directory: /tmp/pip-ephem-wheel-cache-x8gu219u/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
10:34:10 Successfully built omero-metadata
10:34:10 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
10:34:15 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2
10:34:15 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:34:16 Collecting omero-cli-render
10:34:16 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-wzzdbc31/omero-cli-render_f402939090d642cbbc50c84aa4405111
10:34:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-wzzdbc31/omero-cli-render_f402939090d642cbbc50c84aa4405111
10:34:16 Running command git checkout -b merge_ci --track origin/merge_ci
10:34:17 Switched to a new branch 'merge_ci'
10:34:17 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:34:17 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit d85a2dd6cd6f605aca12fac760360a6faba41fcf
10:34:17 Installing build dependencies: started
10:34:19 Installing build dependencies: finished with status 'done'
10:34:19 Getting requirements to build wheel: started
10:34:19 Getting requirements to build wheel: finished with status 'done'
10:34:19 Preparing metadata (pyproject.toml): started
10:34:19 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
10:34:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6)
10:34:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
10:34:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:34:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:34:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
10:34:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
10:34:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:34:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
10:34:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
10:34:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
10:34:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
10:34:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.12.14)
10:34:19 Building wheels for collected packages: omero-cli-render
10:34:19 Building wheel for omero-cli-render (pyproject.toml): started
10:34:19 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:34:19 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19580 sha256=116ebe6a0fcacf118be8c48d994b594dd6205fea29724e9a2e201b39591edbc1
10:34:19 Stored in directory: /tmp/pip-ephem-wheel-cache-gpw6725q/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
10:34:19 Successfully built omero-cli-render
10:34:19 Installing collected packages: omero-cli-render
10:34:19 Successfully installed omero-cli-render-0.8.2.dev0
10:34:19 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:34:20 Collecting omero-cli-duplicate
10:34:20 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-dp77sx22/omero-cli-duplicate_8feb6a2a977246b8a438b041e1d43ad7
10:34:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-dp77sx22/omero-cli-duplicate_8feb6a2a977246b8a438b041e1d43ad7
10:34:21 Running command git checkout -b merge_ci --track origin/merge_ci
10:34:21 Switched to a new branch 'merge_ci'
10:34:21 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:34:21 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c7bbbfabde505f4731f2943c5425180608eecb3b
10:34:21 Installing build dependencies: started
10:34:23 Installing build dependencies: finished with status 'done'
10:34:23 Getting requirements to build wheel: started
10:34:23 Getting requirements to build wheel: finished with status 'done'
10:34:23 Preparing metadata (pyproject.toml): started
10:34:23 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:23 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6)
10:34:23 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
10:34:23 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:34:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:34:23 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
10:34:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
10:34:23 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
10:34:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:34:23 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
10:34:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
10:34:23 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
10:34:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
10:34:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.12.14)
10:34:23 Building wheels for collected packages: omero-cli-duplicate
10:34:23 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:34:24 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:34:24 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11507 sha256=af7f5a9bf250ff9f489ff186a132b9d8843a0808fabfad557dfcba8e93f88f67
10:34:24 Stored in directory: /tmp/pip-ephem-wheel-cache-pwu5yx17/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
10:34:24 Successfully built omero-cli-duplicate
10:34:24 Installing collected packages: omero-cli-duplicate
10:34:24 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:34:24 + pip install omero-certificates
10:34:24 Collecting omero-certificates
10:34:24 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
10:34:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6)
10:34:25 Collecting distro==1.8.0 (from omero-certificates)
10:34:25 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
10:34:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
10:34:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:34:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:34:25 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
10:34:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
10:34:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
10:34:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:34:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
10:34:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
10:34:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
10:34:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
10:34:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.12.14)
10:34:25 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
10:34:25 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
10:34:25 Installing collected packages: distro, omero-certificates
10:34:27 Successfully installed distro-1.8.0 omero-certificates-0.3.2
10:34:27 + for x in *.tar.gz
10:34:27 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:34:27 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:34:27 Installing build dependencies: started
10:34:29 Installing build dependencies: finished with status 'done'
10:34:29 Getting requirements to build wheel: started
10:34:29 Getting requirements to build wheel: finished with status 'done'
10:34:29 Preparing metadata (pyproject.toml): started
10:34:29 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:29 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6)
10:34:29 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
10:34:29 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:34:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:34:29 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
10:34:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
10:34:29 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
10:34:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:34:29 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
10:34:29 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
10:34:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
10:34:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
10:34:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.12.14)
10:34:29 Building wheels for collected packages: omero-dropbox
10:34:29 Building wheel for omero-dropbox (pyproject.toml): started
10:34:30 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:34:30 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49107 sha256=2a063d14dc36b1726835d57dc6b639b196442b838e1dc37012284fc3fca5f1a7
10:34:30 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
10:34:30 Successfully built omero-dropbox
10:34:30 Installing collected packages: omero-dropbox
10:34:30 Successfully installed omero-dropbox-5.7.1.dev0
10:34:30 + for x in *.tar.gz
10:34:30 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
10:34:30 Processing ./omero_marshal-0.9.1.dev0.tar.gz
10:34:30 Installing build dependencies: started
10:34:32 Installing build dependencies: finished with status 'done'
10:34:32 Getting requirements to build wheel: started
10:34:32 Getting requirements to build wheel: finished with status 'done'
10:34:32 Preparing metadata (pyproject.toml): started
10:34:33 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:33 Building wheels for collected packages: omero_marshal
10:34:33 Building wheel for omero_marshal (pyproject.toml): started
10:34:33 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:34:33 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88094 sha256=212f4cbde718ccb5a1d6e2c86d13364ebfe6c335978ed3b2bc75822b39d64b44
10:34:33 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
10:34:33 Successfully built omero_marshal
10:34:33 Installing collected packages: omero_marshal
10:34:33 Successfully installed omero_marshal-0.9.1.dev0
10:34:33 + for x in *.tar.gz
10:34:33 + pip install -U omero_py-5.19.7.dev0.tar.gz
10:34:34 Processing ./omero_py-5.19.7.dev0.tar.gz
10:34:34 Installing build dependencies: started
10:34:36 Installing build dependencies: finished with status 'done'
10:34:36 Getting requirements to build wheel: started
10:34:36 Getting requirements to build wheel: finished with status 'done'
10:34:36 Preparing metadata (pyproject.toml): started
10:34:36 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20)
10:34:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4)
10:34:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0)
10:34:36 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4)
10:34:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0)
10:34:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2)
10:34:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5)
10:34:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3)
10:34:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1)
10:34:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1)
10:34:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10)
10:34:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2024.12.14)
10:34:36 Building wheels for collected packages: omero-py
10:34:36 Building wheel for omero-py (pyproject.toml): started
10:34:37 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:34:37 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783322 sha256=64be67229236e99d56fcd622f750d0cee5e109500a6e38e766d179714cf4ec46
10:34:37 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b
10:34:37 Successfully built omero-py
10:34:38 Installing collected packages: omero-py
10:34:38 Attempting uninstall: omero-py
10:34:38 Found existing installation: omero-py 5.19.6
10:34:38 Uninstalling omero-py-5.19.6:
10:34:38 Successfully uninstalled omero-py-5.19.6
10:34:40 Successfully installed omero-py-5.19.7.dev0
10:34:40 + for x in *.tar.gz
10:34:40 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
10:34:41 Processing ./omero_scripts-5.9.1.dev0.tar.gz
10:34:41 Installing build dependencies: started
10:34:43 Installing build dependencies: finished with status 'done'
10:34:43 Getting requirements to build wheel: started
10:34:43 Getting requirements to build wheel: finished with status 'done'
10:34:43 Preparing metadata (pyproject.toml): started
10:34:43 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:43 Building wheels for collected packages: omero-scripts
10:34:43 Building wheel for omero-scripts (pyproject.toml): started
10:34:44 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:34:44 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136850 sha256=d89824d407b82b4ca32178010a99ceaeb34da04b51e4ae2634b38a3502d8dad5
10:34:44 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
10:34:44 Successfully built omero-scripts
10:34:44 Installing collected packages: omero-scripts
10:34:44 Successfully installed omero-scripts-5.9.1.dev0
10:34:44 + for x in *.tar.gz
10:34:44 + pip install -U omero_web-5.28.1.dev0.tar.gz
10:34:44 Processing ./omero_web-5.28.1.dev0.tar.gz
10:34:45 Installing build dependencies: started
10:34:46 Installing build dependencies: finished with status 'done'
10:34:46 Getting requirements to build wheel: started
10:34:47 Getting requirements to build wheel: finished with status 'done'
10:34:47 Preparing metadata (pyproject.toml): started
10:34:47 Preparing metadata (pyproject.toml): finished with status 'done'
10:34:47 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (5.19.7.dev0)
10:34:47 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.28.1.dev0)
10:34:47 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
10:34:47 Collecting Django<4.3,>=4.2.3 (from omero-web==5.28.1.dev0)
10:34:47 Using cached Django-4.2.17-py3-none-any.whl.metadata (4.1 kB)
10:34:48 Collecting django-pipeline (from omero-web==5.28.1.dev0)
10:34:48 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
10:34:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.28.1.dev0)
10:34:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:34:48 Collecting django-csp (from omero-web==5.28.1.dev0)
10:34:48 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
10:34:48 Collecting whitenoise>=5.3.0 (from omero-web==5.28.1.dev0)
10:34:48 Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB)
10:34:48 Collecting gunicorn>=19.3 (from omero-web==5.28.1.dev0)
10:34:48 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
10:34:48 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (0.9.1.dev0)
10:34:48 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (11.1.0)
10:34:48 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (2024.2)
10:34:48 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (3.1.1)
10:34:48 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (24.2)
10:34:48 Collecting importlib-resources (from omero-web==5.28.1.dev0)
10:34:48 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
10:34:49 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
10:34:49 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
10:34:49 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
10:34:49 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
10:34:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.20)
10:34:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.4.4)
10:34:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.0.0)
10:34:49 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.4)
10:34:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (6.0.2)
10:34:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.6.5)
10:34:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (2.32.3)
10:34:49 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.28.1.dev0) (53.0.0)
10:34:49 Collecting wheel (from django-pipeline->omero-web==5.28.1.dev0)
10:34:49 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
10:34:49 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.28.1.dev0) (3.21.0)
10:34:49 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
10:34:49 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
10:34:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.4.1)
10:34:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.10)
10:34:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (2024.12.14)
10:34:49 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:34:49 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
10:34:49 Using cached Django-4.2.17-py3-none-any.whl (8.0 MB)
10:34:50 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
10:34:50 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB)
10:34:50 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
10:34:50 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
10:34:50 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
10:34:50 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
10:34:51 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
10:34:51 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
10:34:51 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
10:34:51 Building wheels for collected packages: omero-web
10:34:51 Building wheel for omero-web (pyproject.toml): started
10:34:52 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:34:52 Created wheel for omero-web: filename=omero_web-5.28.1.dev0-py3-none-any.whl size=2771059 sha256=1017680acc610d1cdef9a0cad7931807689bda533b398b99f84af0075b26724d
10:34:52 Stored in directory: /home/omero/.cache/pip/wheels/97/1e/88/508867809512b265cdeb53be905e01f64ea0b8d6c0b64f8ebd
10:34:52 Successfully built omero-web
10:34:52 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
10:34:55 Successfully installed Django-4.2.17 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.28.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.8.2
10:34:55 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:34:57 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:34:57 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:34:57 --2025-01-14 10:34:57-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:34:57 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.110.133, ...
10:34:57 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
10:34:57 HTTP request sent, awaiting response... 200 OK
10:34:57 Length: 111766 (109K) [text/plain]
10:34:57 Saving to: ‘Figure_To_Pdf.py’
10:34:57
10:34:57 0K .......... .......... .......... .......... .......... 45% 3.53M 0s
10:34:57 50K .......... .......... .......... .......... .......... 91% 5.15M 0s
10:34:57 100K ......... 100% 204M=0.02s
10:34:57
10:34:57 2025-01-14 10:34:57 (4.56 MB/s) - ‘Figure_To_Pdf.py’ saved [111766/111766]
10:34:57
10:34:57 + chmod 755 Figure_To_Pdf.py
10:34:57 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:34:57 + omero config set omero.db.name OMERO-server
10:34:59 + omero config set omero.db.host pg
10:35:00 + omero config set omero.db.user postgres
10:35:02 + omero config set omero.data.dir /home/omero/omero-server-data
10:35:03 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:35:05 + omero config set omero.db.poolsize 25
10:35:06 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:35:07 + omero config set omero.security.trustStorePassword changeit
10:35:09 + omero config set omero.mail.config true
10:35:10 + omero config set omero.mail.from qa@openmicroscopy.org.uk
10:35:12 + omero config set omero.mail.host smtp.dundee.ac.uk
10:35:13 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:35:15 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:35:16 + omero certificates
10:35:18 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
10:35:18 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:35:18 + '[' false = true ']'
10:35:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:35:18 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:35:18 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG dbcommand => upgrade
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG dbhost => localhost
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG dbname => OMERO-server
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG dbpass => omero
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG dbuser => omero
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG rootpass => omero
10:35:18 2025-01-14 10:35:18,726 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:35:18 2025-01-14 10:35:18,726 [omego.extern] INFO Executing : omero version
10:35:19 OMERO.py version:
10:35:19 OMERO.server version:
10:35:19 5.6.3-531-5d9812eafd-ice36
10:35:19 5.19.7.dev0
10:35:20 2025-01-14 10:35:20,199 [omego.extern] INFO Completed [1.473 s]
10:35:20 2025-01-14 10:35:20,200 [omego.extern] DEBUG Using omero CLI from omero
10:35:20 2025-01-14 10:35:20,200 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:35:20 2025-01-14 10:35:20,200 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:35:20 2025-01-14 10:35:20,200 [omego.extern] INFO Executing : omero config get --show-password
10:35:21 2025-01-14 10:35:21,542 [omego.extern] INFO Completed [1.342 s]
10:35:21 2025-01-14 10:35:21,543 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:35:21 2025-01-14 10:35:21,543 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:35:22 2025-01-14 10:35:22,728 [omego.extern] INFO Completed [1.185 s]
10:35:22 2025-01-14 10:35:22,729 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
10:35:22 2025-01-14 10:35:22,729 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
10:35:22
10:35:22 2025-01-14 10:35:22,729 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:35:22 2025-01-14 10:35:22,729 [omego.extern] INFO Executing : omero config get --show-password
10:35:24 2025-01-14 10:35:24,259 [omego.extern] INFO Completed [1.530 s]
10:35:24 2025-01-14 10:35:24,260 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:35:24 2025-01-14 10:35:24,260 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:35:24 2025-01-14 10:35:24,458 [omego.extern] INFO Completed [0.198 s]
10:35:24 2025-01-14 10:35:24,458 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
10:35:24 2025-01-14 10:35:24,458 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:35:24 2025-01-14 10:35:24,458 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:35:24 2025-01-14 10:35:24,458 [omego.extern] INFO Executing : omero config get --show-password
10:35:25 2025-01-14 10:35:25,795 [omego.extern] INFO Completed [1.337 s]
10:35:25 2025-01-14 10:35:25,796 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:35:25 2025-01-14 10:35:25,796 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:35:26 2025-01-14 10:35:26,002 [omego.extern] INFO Completed [0.206 s]
10:35:26 2025-01-14 10:35:26,002 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:35:26 2025-01-14 10:35:26,003 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:35:26 2025-01-14 10:35:26,004 [ omego.db] INFO Database is already at OMERO5.4__0
10:35:26 + export LANG=en_US.UTF-8
10:35:26 + LANG=en_US.UTF-8
10:35:26 + export LANGUAGE=en_US:en
10:35:26 + LANGUAGE=en_US:en
10:35:26 + export LC_ALL=en_US.UTF-8
10:35:26 + LC_ALL=en_US.UTF-8
10:35:26 + BUILD_ID=DONT_KILL_ME
10:35:26 + omero admin start
10:35:37 No descriptor given. Using etc/grid/default.xml
10:35:49 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:35:49 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:35:49 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:35:49 Waiting on startup. Use CTRL-C to exit
10:35:49 + omero admin waitup
10:35:50 Waiting on startup. Use CTRL-C to exit
10:35:50 + omero admin diagnostics
10:35:52
10:35:52 ================================================================================
10:35:52 OMERO Diagnostics (admin)
10:35:52 ================================================================================
10:35:52
10:35:52 Commands: java -version 11.0.24 (/usr/bin/java)
10:35:52 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:35:52 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:35:52 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:35:52 Commands: psql --version 16.4 (/usr/bin/psql)
10:35:52 Commands: openssl version 3.0.71 (/usr/bin/openssl)
10:35:52
10:35:52 Component: OMERO.py 5.19.7.dev0
10:35:52 Component: OMERO.server 5.6.3-531-5d9812eafd-ice36
10:35:52
10:35:52 Server: icegridnode running
10:35:52 Server: Blitz-0 active (pid = 59290, enabled)
10:35:52 Server: Indexer-0 activating (enabled)
10:35:52 Server: OMERO.Glacier2 active (pid = 59314, enabled)
10:35:52 Server: OMERO.IceStorm active (pid = 59343, enabled)
10:35:52 Server: Processor-0 active (pid = 59334, enabled)
10:35:52 Server: Tables-0 active (pid = 59342, enabled)
10:35:52
10:35:52 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:35:52 Log files: Blitz-0.log 30.6 KB errors=0 warnings=1
10:35:52 Log files: DropBox.log n/a
10:35:52 Log files: FileServer.log n/a
10:35:52 Log files: Indexer-0.log 598 B
10:35:52 Log files: MonitorServer.log n/a
10:35:52 Log files: Processor-0.log 735 B
10:35:52 Log files: Tables-0.log 961 B
10:35:52 Log files: TestDropBox.log n/a
10:35:52 Log files: master.err 180 B
10:35:52 Log files: master.out 30.1 KB
10:35:52 Log files: Total size 0.06 MB
10:35:52
10:35:52
10:35:52 Environment:OMERO_HOME=(unset)
10:35:52 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:35:52 Environment:OMERO_NODE=(unset)
10:35:52 Environment:OMERO_MASTER=(unset)
10:35:52 Environment:OMERO_USERDIR=(unset)
10:35:52 Environment:OMERO_TMPDIR=(unset)
10:35:52 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:35:52 Environment:PYTHONPATH=(unset)
10:35:52 Environment:ICE_HOME=/opt/ice-3.6.5
10:35:52 Environment:LD_LIBRARY_PATH=(unset)
10:35:52 Environment:DYLD_LIBRARY_PATH=(unset)
10:35:52
10:35:52 OMERO SSL port:4064
10:35:52 OMERO TCP port:4063
10:35:52 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:35:52 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:35:52
10:35:52 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:35:52 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:35:52 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:35:52 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
10:35:52
10:35:52 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 14 January 2025 120dcfd127a4956b22907def61b21f56aa28a4e6
10:35:52 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 14 January 2025 120dcfd127a4956b22907def61b21f56aa28a4e6
10:35:52 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 14 January 2025 120dcfd127a4956b22907def61b21f56aa28a4e6
10:35:52 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/ome-common.jar OME Common Java 6.0.25-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 14 January 2025 99515ac518bd615d4a04197187069ec09acc5f45
10:35:52 Jar: lib/server/omero-blitz.jar jar 5.8.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-common.jar jar 5.7.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-gateway.jar jar 5.10.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-model.jar jar 5.7.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-renderer.jar jar 5.6.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-romio.jar jar 5.8.1-SNAPSHOT
10:35:52 Jar: lib/server/omero-server.jar jar 5.7.1-SNAPSHOT
10:35:53 + deactivate
10:35:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:35:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:35:53 + export PATH
10:35:53 + unset _OLD_VIRTUAL_PATH
10:35:53 + '[' -n '' ']'
10:35:53 + '[' -n /bin/bash -o -n '' ']'
10:35:53 + hash -r
10:35:53 + '[' -n '' ']'
10:35:53 + unset VIRTUAL_ENV
10:35:53 + '[' '!' '' = nondestructive ']'
10:35:53 + unset -f deactivate
10:35:53 Finished: SUCCESS
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