Console

09:42:30 Started by upstream project "Trigger" build number 42
09:42:30 originally caused by:
09:42:30  Started by user devspace
09:42:30 Running as SYSTEM
09:42:30 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:42:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins17251174678007908867.sh
09:42:30 + source /home/settings.env
09:42:30 ++ OMERO_DB_HOST=pg
09:42:30 ++ OMERO_DB_USER=postgres
09:42:30 ++ OMERO_DB_PASS=
09:42:30 ++ OMERO_ROOT_PASS=omero
09:42:30 ++ OMERO_DATA_DIR=/OMERO
09:42:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:42:30 + OMERO_DB_NAME=OMERO-server
09:42:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:42:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:42:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:42:30 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:42:30 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:42:30 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:42:30 ++ deactivate nondestructive
09:42:30 ++ '[' -n '' ']'
09:42:30 ++ '[' -n '' ']'
09:42:30 ++ hash -r
09:42:30 ++ '[' -n '' ']'
09:42:30 ++ unset VIRTUAL_ENV
09:42:30 ++ unset VIRTUAL_ENV_PROMPT
09:42:30 ++ '[' '!' nondestructive = nondestructive ']'
09:42:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:42:30 ++ export VIRTUAL_ENV
09:42:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:42:30 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:42:30 ++ export PATH
09:42:30 ++ '[' -n '' ']'
09:42:30 ++ '[' -z '' ']'
09:42:30 ++ _OLD_VIRTUAL_PS1=
09:42:30 ++ PS1='(.venv3) '
09:42:30 ++ export PS1
09:42:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:42:30 ++ export VIRTUAL_ENV_PROMPT
09:42:30 ++ hash -r
09:42:30 + omero admin stop
09:42:37 Waiting on shutdown. Use CTRL-C to exit
09:42:37 .+ sleep 5
09:42:52 + deactivate
09:42:52 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:42:52 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:42:52 + export PATH
09:42:52 + unset _OLD_VIRTUAL_PATH
09:42:52 + '[' -n '' ']'
09:42:52 + hash -r
09:42:52 + '[' -n '' ']'
09:42:52 + unset VIRTUAL_ENV
09:42:52 + unset VIRTUAL_ENV_PROMPT
09:42:52 + '[' '!' '' = nondestructive ']'
09:42:52 + unset -f deactivate
09:42:52 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:44:24 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
09:44:43 + '[' false = true ']'
09:44:43 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:44:43 Skipping PURGE_DATA:CleanDbAndRepo
09:44:43 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:44:48 Copied 1 artifact from "OMERO-build" build number 31
09:44:48 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 27
09:44:48 Copied 2 artifacts from "OMERO-build-build" build number 39
09:44:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3399286407760195349.sh
09:44:48 + source /home/settings.env
09:44:48 ++ OMERO_DB_HOST=pg
09:44:48 ++ OMERO_DB_USER=postgres
09:44:48 ++ OMERO_DB_PASS=
09:44:48 ++ OMERO_ROOT_PASS=omero
09:44:48 ++ OMERO_DATA_DIR=/OMERO
09:44:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:44:48 + OMERO_DB_NAME=OMERO-server
09:44:48 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:44:48 + mkdir -p /home/omero/omero-server-data
09:44:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:44:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:44:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:44:48 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:44:48 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:44:48 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:44:48 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:44:48 ++ ls OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:44:48 + ZIP=OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:44:48 + '[' '!' -z '' ']'
09:44:48 + DIST=OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31
09:44:48 + unzip OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:44:48 Archive:  OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/grid/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/profiles/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/error/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/janelia/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/matplotlib/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/ncsa_paledit/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/seaborn/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/luts/wcif/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/analysis_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/annotation_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/export_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/figure_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/import_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/scripts/omero/util_scripts/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/server/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/share/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/share/licenses/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/misc/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__1/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__10/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__11/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__2/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__3/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__4/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__5/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__6/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__7/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__8/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__9/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__4/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__5/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__6/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__7/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.1__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__1/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__2/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__3/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/var/
09:44:48    creating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/var/tmp/
09:44:48   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/LICENSE.txt  
09:44:48   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/backup.cfg  
09:44:48   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/mail-senders.example  
09:44:48   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/blitz/mail-server.example  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/build.properties  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/env.bat  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/env.sh  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/hibernate.properties  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/ice.config  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-cli.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-indexing-cli.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback-indexing.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/logback.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/mime.types  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/node1.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/node2.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/omero.properties  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/profiles/psql  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/rollover.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/Windows.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/error/maintainance.html  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/README  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/default.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/templates.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/grid/windefault.xml  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/ice.config  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/internal.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/master.cfg  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/templates/robot.template  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/etc/testdropbox.config  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/history.rst  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/OMEZarrReader.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/accessors-smart.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/activation.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aggdesigner-algorithm.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aircompressor.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/antlr.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aopalliance.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/apiguardian-api.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/asm.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/avatica-core.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/avatica-metrics.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-core.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-kms.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/aws-java-sdk-s3.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/base.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-anim.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-awt-util.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-bridge.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-codec.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-constants.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-css.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-dom.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-ext.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-gvt.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-i18n.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-parser.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-script.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-shared-resources.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-svg-dom.jar  
09:44:49   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/lib/client/batik-svggen.jar  
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09:45:11   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__6/OMERO3A__5.sql  
09:45:11   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__7/OMERO3A__6.sql  
09:45:11   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__8/OMERO3A__6.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3A__9/OMERO3A__8.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__4/OMERO3__1.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__5/OMERO3__4.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__6/OMERO3__5.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO3__7/OMERO3__6.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.1__0/OMERO4__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO4__0/OMERO3A__11.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/psql-footer.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/psql-header.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/schema.sql  
09:45:12   inflating: OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31/sql/psql/OMERO5.4__0/views.sql  
09:45:12 + rm -f OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip
09:45:12 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31 /home/omero/workspace/OMERO-server/OMERO.server
09:45:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:45:12 ++ deactivate nondestructive
09:45:12 ++ '[' -n '' ']'
09:45:12 ++ '[' -n '' ']'
09:45:12 ++ hash -r
09:45:12 ++ '[' -n '' ']'
09:45:12 ++ unset VIRTUAL_ENV
09:45:12 ++ unset VIRTUAL_ENV_PROMPT
09:45:12 ++ '[' '!' nondestructive = nondestructive ']'
09:45:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:45:12 ++ export VIRTUAL_ENV
09:45:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:12 ++ export PATH
09:45:12 ++ '[' -n '' ']'
09:45:12 ++ '[' -z '' ']'
09:45:12 ++ _OLD_VIRTUAL_PS1=
09:45:12 ++ PS1='(.venv3) '
09:45:12 ++ export PS1
09:45:12 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:45:12 ++ export VIRTUAL_ENV_PROMPT
09:45:12 ++ hash -r
09:45:12 + pip install -U pip
09:45:13 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
09:45:13 Collecting pip
09:45:13   Using cached pip-26.2-py3-none-any.whl (1.8 MB)
09:45:14 Installing collected packages: pip
09:45:14   Attempting uninstall: pip
09:45:14     Found existing installation: pip 22.3.1
09:45:14     Uninstalling pip-22.3.1:
09:45:14       Successfully uninstalled pip-22.3.1
09:45:27 Successfully installed pip-26.2
09:45:28 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:45:29 Collecting zeroc-ice==3.6.5
09:45:29   Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:45:32      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.3 MB/s  0:00:02
09:45:32 Installing collected packages: zeroc-ice
09:45:44 Successfully installed zeroc-ice-3.6.5
09:45:44 + pip install markdown
09:45:45 Collecting markdown
09:45:45   Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
09:45:45 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
09:45:45 Installing collected packages: markdown
09:45:46 Successfully installed markdown-3.10.3
09:45:46 + pip install reportlab
09:45:47 Collecting reportlab
09:45:47   Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
09:45:47 Collecting pillow>=9.0.0 (from reportlab)
09:45:47   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
09:45:48 Collecting charset-normalizer (from reportlab)
09:45:48   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
09:45:48 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
09:45:48 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:45:48 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
09:45:48 Installing collected packages: pillow, charset-normalizer, reportlab
09:45:57 
09:45:57 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
09:45:57 + pip install omego
09:45:58 Collecting omego
09:45:58   Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
09:45:58 Collecting future (from omego)
09:45:58   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:45:58 Collecting yaclifw>=0.1.1 (from omego)
09:45:58   Using cached yaclifw-0.2.0-py3-none-any.whl
09:45:58 Collecting six (from yaclifw>=0.1.1->omego)
09:45:58   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:45:58 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
09:45:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:45:58 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:45:58 Installing collected packages: six, future, yaclifw, omego
09:46:03 
09:46:03 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
09:46:03 + pip install tables
09:46:04 Collecting tables
09:46:04   Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
09:46:04 Collecting numpy>=1.20.0 (from tables)
09:46:04   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
09:46:04 Collecting numexpr>=2.6.2 (from tables)
09:46:04   Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
09:46:04 Collecting packaging (from tables)
09:46:04   Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
09:46:04 Collecting py-cpuinfo (from tables)
09:46:04   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:46:05 Collecting blosc2>=2.3.0 (from tables)
09:46:05   Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
09:46:05 Collecting ndindex (from blosc2>=2.3.0->tables)
09:46:05   Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
09:46:05 Collecting msgpack (from blosc2>=2.3.0->tables)
09:46:05   Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
09:46:05 Collecting pydantic (from blosc2>=2.3.0->tables)
09:46:05   Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
09:46:05 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
09:46:05   Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
09:46:05 Collecting rich (from blosc2>=2.3.0->tables)
09:46:05   Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
09:46:05 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
09:46:05   Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
09:46:05 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
09:46:05   Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
09:46:05 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
09:46:05   Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
09:46:05 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
09:46:05   Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
09:46:05 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
09:46:05   Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
09:46:06 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
09:46:06   Using cached h2-4.4.0-py3-none-any.whl.metadata (3.8 kB)
09:46:06 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
09:46:06   Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
09:46:06 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
09:46:06   Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
09:46:06 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
09:46:06   Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
09:46:06 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
09:46:06   Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
09:46:06 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
09:46:06   Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
09:46:07 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
09:46:07   Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
09:46:07 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
09:46:07   Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
09:46:07 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
09:46:07   Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
09:46:07 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
09:46:07   Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
09:46:07 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
09:46:07   Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
09:46:07 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
09:46:07 Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
09:46:07 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
09:46:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:46:07 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
09:46:07 Using cached h2-4.4.0-py3-none-any.whl (62 kB)
09:46:07 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
09:46:07 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
09:46:07 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
09:46:07 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
09:46:07 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
09:46:07 Using cached idna-3.18-py3-none-any.whl (65 kB)
09:46:07 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
09:46:07 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
09:46:07 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
09:46:07 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
09:46:07 Using cached packaging-26.2-py3-none-any.whl (100 kB)
09:46:07 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:46:07 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
09:46:07 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
09:46:07 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
09:46:07 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
09:46:07 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
09:46:07 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
09:46:07 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
09:46:07 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
09:46:07 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
09:46:07 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
09:47:00 
09:47:00 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.9.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
09:47:00 + pip install jinja2
09:47:01 Collecting jinja2
09:47:01   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
09:47:01 Collecting MarkupSafe>=2.0 (from jinja2)
09:47:01   Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
09:47:01 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
09:47:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
09:47:01 Installing collected packages: MarkupSafe, jinja2
09:47:02 
09:47:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
09:47:02 + pip install omero-py
09:47:03 Collecting omero-py
09:47:03   Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
09:47:03 Collecting appdirs (from omero-py)
09:47:03   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:47:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
09:47:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
09:47:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
09:47:03 Collecting PyYAML (from omero-py)
09:47:03   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
09:47:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:47:03 Collecting requests (from omero-py)
09:47:03   Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
09:47:03 Collecting portalocker (from omero-py)
09:47:03   Using cached portalocker-4.0.0-py3-none-any.whl.metadata (10 kB)
09:47:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
09:47:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
09:47:03 Collecting urllib3<3,>=1.26 (from requests->omero-py)
09:47:03   Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
09:47:03 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
09:47:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
09:47:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:47:03 Using cached portalocker-4.0.0-py3-none-any.whl (33 kB)
09:47:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:47:03 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:47:03 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
09:47:04 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
09:47:20 
09:47:21 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 urllib3-2.7.0
09:47:21 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:47:21 Collecting omero-metadata
09:47:21   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-mnfygoi7/omero-metadata_f6a3fcaf7aa449a7aa446c96b23ed76d
09:47:21   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-mnfygoi7/omero-metadata_f6a3fcaf7aa449a7aa446c96b23ed76d
09:47:25   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2f873ee5e99ccb4cf22a6a42896759f589caee66
09:47:25   Installing build dependencies: started
09:47:26   Installing build dependencies: finished with status 'done'
09:47:26   Getting requirements to build wheel: started
09:47:27   Getting requirements to build wheel: finished with status 'done'
09:47:27   Preparing metadata (pyproject.toml): started
09:47:27   Preparing metadata (pyproject.toml): finished with status 'done'
09:47:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
09:47:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
09:47:27 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
09:47:27 Collecting pandas (from omero-metadata)
09:47:27   Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
09:47:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:47:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:47:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
09:47:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
09:47:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:47:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
09:47:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.0.0)
09:47:27 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
09:47:27 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:47:27   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:47:27 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
09:47:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
09:47:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
09:47:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
09:47:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
09:47:27 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
09:47:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:47:27 Building wheels for collected packages: omero-metadata
09:47:27   Building wheel for omero-metadata (pyproject.toml): started
09:47:28   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:47:28   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=6b73cef163291c9d8262a0dbc73bb64fc4b238b49ed5a32c4a47eb6d52990c71
09:47:28   Stored in directory: /tmp/pip-ephem-wheel-cache-dde9ucon/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
09:47:28 Successfully built omero-metadata
09:47:28 Installing collected packages: python-dateutil, pandas, omero-metadata
09:48:07 
09:48:07 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0
09:48:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:48:08 Collecting omero-cli-render
09:48:08   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-q_uztnx3/omero-cli-render_c161b751b9474443bef120f2da4e0126
09:48:08   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-q_uztnx3/omero-cli-render_c161b751b9474443bef120f2da4e0126
09:48:09   Running command git checkout -b merge_ci --track origin/merge_ci
09:48:09   Switched to a new branch 'merge_ci'
09:48:09   branch 'merge_ci' set up to track 'origin/merge_ci'.
09:48:09   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 044f1bfb7352954f33e1c0b1ec4c9a510e88089e
09:48:09   Installing build dependencies: started
09:48:10   Installing build dependencies: finished with status 'done'
09:48:10   Getting requirements to build wheel: started
09:48:11   Getting requirements to build wheel: finished with status 'done'
09:48:11   Preparing metadata (pyproject.toml): started
09:48:11   Preparing metadata (pyproject.toml): finished with status 'done'
09:48:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
09:48:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
09:48:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:48:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:48:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
09:48:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
09:48:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:48:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
09:48:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.0.0)
09:48:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
09:48:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
09:48:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
09:48:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
09:48:11 Building wheels for collected packages: omero-cli-render
09:48:11   Building wheel for omero-cli-render (pyproject.toml): started
09:48:11   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:48:11   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=7779d4125aaad79c73b89ebb6bf35e4c9b2ea5c6cd9cfdec62753fc46e1de2a8
09:48:11   Stored in directory: /tmp/pip-ephem-wheel-cache-l_3d0gfr/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
09:48:11 Successfully built omero-cli-render
09:48:11 Installing collected packages: omero-cli-render
09:48:12 Successfully installed omero-cli-render-0.8.2.dev0
09:48:12 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:48:13 Collecting omero-cli-duplicate
09:48:13   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-w0p9sy1c/omero-cli-duplicate_ad341f419c004d2caa558eb0f8ae9431
09:48:13   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-w0p9sy1c/omero-cli-duplicate_ad341f419c004d2caa558eb0f8ae9431
09:48:14   Running command git checkout -b merge_ci --track origin/merge_ci
09:48:14   Switched to a new branch 'merge_ci'
09:48:14   branch 'merge_ci' set up to track 'origin/merge_ci'.
09:48:14   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 2ec37301fcf4d6956c52af82bddcb12302f091bb
09:48:14   Installing build dependencies: started
09:48:15   Installing build dependencies: finished with status 'done'
09:48:15   Getting requirements to build wheel: started
09:48:15   Getting requirements to build wheel: finished with status 'done'
09:48:15   Preparing metadata (pyproject.toml): started
09:48:16   Preparing metadata (pyproject.toml): finished with status 'done'
09:48:16 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
09:48:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:48:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:48:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
09:48:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
09:48:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
09:48:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:48:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
09:48:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.0.0)
09:48:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
09:48:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
09:48:16 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
09:48:16 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
09:48:16 Building wheels for collected packages: omero-cli-duplicate
09:48:16   Building wheel for omero-cli-duplicate (pyproject.toml): started
09:48:16   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:48:16   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=71e4a617cfebc34ade7bede85a88e407e71c6ae9d22317f58493bd82dc170b56
09:48:16   Stored in directory: /tmp/pip-ephem-wheel-cache-f48yokaw/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
09:48:16 Successfully built omero-cli-duplicate
09:48:16 Installing collected packages: omero-cli-duplicate
09:48:16 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:48:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
09:48:17 Collecting omero-cli-zarr
09:48:17   Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-y2w5lp__/omero-cli-zarr_bc067729fd074073817522d4357fce86
09:48:17   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-y2w5lp__/omero-cli-zarr_bc067729fd074073817522d4357fce86
09:48:18   Running command git checkout -b merge_ci --track origin/merge_ci
09:48:18   Switched to a new branch 'merge_ci'
09:48:18   branch 'merge_ci' set up to track 'origin/merge_ci'.
09:48:18   Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 8bf746e92a2a93308a7f400d216c4d7e876524ca
09:48:18   Installing build dependencies: started
09:48:19   Installing build dependencies: finished with status 'done'
09:48:19   Getting requirements to build wheel: started
09:48:20   Getting requirements to build wheel: finished with status 'done'
09:48:20   Installing backend dependencies: started
09:48:21   Installing backend dependencies: finished with status 'done'
09:48:21   Preparing metadata (pyproject.toml): started
09:48:21   Preparing metadata (pyproject.toml): finished with status 'done'
09:48:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
09:48:22 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
09:48:22   Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
09:48:22 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
09:48:22 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:48:22   Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB)
09:48:22 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:48:22   Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
09:48:22 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:22   Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
09:48:23 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
09:48:23   Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
09:48:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
09:48:23 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:48:23   Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
09:48:23 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
09:48:23   Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
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09:48:23 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:23 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:23 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:23 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:24 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:24 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:25 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:25 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:25 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:25   Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
09:48:25 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:25   Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
09:48:25 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
09:48:26 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:26   Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
09:48:26 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:26 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:26   Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
09:48:26 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:26   Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
09:48:26 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
09:48:26   Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
09:48:26 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:26 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:27 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:27 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:27 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:27 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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09:48:27 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB)
09:48:27 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
09:48:27 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
09:48:27 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
09:48:27 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
09:48:27 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
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09:48:27 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
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09:48:27 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
09:48:27 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
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09:48:27 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB)
09:48:27 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
09:48:27 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
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09:48:28 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
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09:48:28 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
09:48:28 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
09:48:28 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
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09:48:28 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
09:48:28 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
09:48:28 Building wheels for collected packages: omero-cli-zarr
09:48:28   Building wheel for omero-cli-zarr (pyproject.toml): started
09:48:28   Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
09:48:28   Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g8bf746e-py3-none-any.whl size=38402 sha256=abb36744db0d9acf10de09f3def189e7c8b5f404afbe226a4a071f92f7f7710e
09:48:28   Stored in directory: /tmp/pip-ephem-wheel-cache-3wltyox2/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
09:48:28 Successfully built omero-cli-zarr
09:48:29 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
09:49:02   Attempting uninstall: pydantic-core
09:49:07     Found existing installation: pydantic_core 2.46.4
09:49:07     Uninstalling pydantic_core-2.46.4:
09:49:07       Successfully uninstalled pydantic_core-2.46.4
09:49:46   Attempting uninstall: pydantic
09:49:46     Found existing installation: pydantic 2.13.4
09:49:47     Uninstalling pydantic-2.13.4:
09:49:47       Successfully uninstalled pydantic-2.13.4
09:50:22 
09:50:22 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g8bf746e partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
09:50:22 + pip install omero-certificates
09:50:23 Collecting omero-certificates
09:50:23   Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
09:50:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
09:50:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:50:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:50:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
09:50:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
09:50:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
09:50:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:50:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
09:50:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.0.0)
09:50:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
09:50:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
09:50:23 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
09:50:23 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
09:50:23 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
09:50:23 Installing collected packages: omero-certificates
09:50:24 Successfully installed omero-certificates-0.4.0
09:50:24 + for x in *.tar.gz
09:50:24 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:50:24 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:50:24   Installing build dependencies: started
09:50:26   Installing build dependencies: finished with status 'done'
09:50:26   Getting requirements to build wheel: started
09:50:26   Getting requirements to build wheel: finished with status 'done'
09:50:26   Preparing metadata (pyproject.toml): started
09:50:26   Preparing metadata (pyproject.toml): finished with status 'done'
09:50:26 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
09:50:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:50:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:50:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
09:50:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
09:50:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
09:50:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:50:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
09:50:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.0.0)
09:50:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
09:50:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
09:50:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
09:50:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
09:50:26 Building wheels for collected packages: omero-dropbox
09:50:26   Building wheel for omero-dropbox (pyproject.toml): started
09:50:26   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:50:26   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=33745353f8e665526623891e17364a583f96c9e372b00dbbacf9a491be22aa16
09:50:26   Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
09:50:26 Successfully built omero-dropbox
09:50:27 Installing collected packages: omero-dropbox
09:50:27 Successfully installed omero-dropbox-5.7.1.dev0
09:50:27 + for x in *.tar.gz
09:50:27 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
09:50:28 Processing ./omero_marshal-0.9.2.dev0.tar.gz
09:50:28   Installing build dependencies: started
09:50:29   Installing build dependencies: finished with status 'done'
09:50:29   Getting requirements to build wheel: started
09:50:29   Getting requirements to build wheel: finished with status 'done'
09:50:29   Preparing metadata (pyproject.toml): started
09:50:30   Preparing metadata (pyproject.toml): finished with status 'done'
09:50:30 Building wheels for collected packages: omero_marshal
09:50:30   Building wheel for omero_marshal (pyproject.toml): started
09:50:30   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:50:30   Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=59e34ed66df4f068dd15c074a34130833d9d05b98ddac161fbdc77f991e4a5a8
09:50:30   Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
09:50:30 Successfully built omero_marshal
09:50:30 Installing collected packages: omero_marshal
09:50:32 Successfully installed omero_marshal-0.9.2.dev0
09:50:32 + for x in *.tar.gz
09:50:32 + pip install -U omero_py-5.23.1.dev0.tar.gz
09:50:33 Processing ./omero_py-5.23.1.dev0.tar.gz
09:50:33   Installing build dependencies: started
09:50:34   Installing build dependencies: finished with status 'done'
09:50:34   Getting requirements to build wheel: started
09:50:35   Getting requirements to build wheel: finished with status 'done'
09:50:35   Preparing metadata (pyproject.toml): started
09:50:35   Preparing metadata (pyproject.toml): finished with status 'done'
09:50:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
09:50:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
09:50:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
09:50:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
09:50:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
09:50:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
09:50:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
09:50:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.0.0)
09:50:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9)
09:50:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18)
09:50:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
09:50:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
09:50:35 Building wheels for collected packages: omero-py
09:50:35   Building wheel for omero-py (pyproject.toml): started
09:50:36   Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:50:36   Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786922 sha256=5165a52ae9760ccba967c99f577ebca194500c69585a090c13eda6f3b14f8c62
09:50:36   Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
09:50:36 Successfully built omero-py
09:50:37 Installing collected packages: omero-py
09:50:37   Attempting uninstall: omero-py
09:50:37     Found existing installation: omero-py 5.23.0
09:50:37     Uninstalling omero-py-5.23.0:
09:50:48       Successfully uninstalled omero-py-5.23.0
09:51:03 Successfully installed omero-py-5.23.1.dev0
09:51:03 + for x in *.tar.gz
09:51:03 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
09:51:04 Processing ./omero_scripts-5.10.1.dev0.tar.gz
09:51:04   Installing build dependencies: started
09:51:05   Installing build dependencies: finished with status 'done'
09:51:05   Getting requirements to build wheel: started
09:51:05   Getting requirements to build wheel: finished with status 'done'
09:51:05   Preparing metadata (pyproject.toml): started
09:51:05   Preparing metadata (pyproject.toml): finished with status 'done'
09:51:05 Building wheels for collected packages: omero-scripts
09:51:05   Building wheel for omero-scripts (pyproject.toml): started
09:51:06   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:51:06   Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=79662f8cb5acb3ebb830bc51fd60043fc131ab7e36e404bcd70a6660e4b26749
09:51:06   Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
09:51:06 Successfully built omero-scripts
09:51:06 Installing collected packages: omero-scripts
09:51:07 Successfully installed omero-scripts-5.10.1.dev0
09:51:07 + for x in *.tar.gz
09:51:07 + pip install -U omero_web-5.32.1.dev0.tar.gz
09:51:07 Processing ./omero_web-5.32.1.dev0.tar.gz
09:51:08   Installing build dependencies: started
09:51:09   Installing build dependencies: finished with status 'done'
09:51:09   Getting requirements to build wheel: started
09:51:09   Getting requirements to build wheel: finished with status 'done'
09:51:09   Preparing metadata (pyproject.toml): started
09:51:09   Preparing metadata (pyproject.toml): finished with status 'done'
09:51:09 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0)
09:51:10 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
09:51:10   Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
09:51:10 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
09:51:10   Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
09:51:10 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
09:51:10   Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
09:51:10 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
09:51:10   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:51:10 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
09:51:10   Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
09:51:10 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
09:51:10   Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
09:51:10 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
09:51:10 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
09:51:10 Collecting pytz (from omero-web==5.32.1.dev0)
09:51:10   Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
09:51:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.0.0)
09:51:10 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
09:51:10 Collecting importlib-resources (from omero-web==5.32.1.dev0)
09:51:10   Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
09:51:10 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
09:51:10   Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
09:51:10 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
09:51:10   Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
09:51:10 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
09:51:10 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
09:51:10   Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
09:51:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
09:51:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
09:51:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
09:51:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
09:51:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
09:51:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
09:51:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
09:51:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
09:51:10 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
09:51:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22)
09:51:10 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:51:10 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
09:51:10 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
09:51:10 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
09:51:10 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
09:51:10 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
09:51:10 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
09:51:10 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
09:51:10 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
09:51:10 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
09:51:10 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
09:51:11 Building wheels for collected packages: omero-web
09:51:11   Building wheel for omero-web (pyproject.toml): started
09:51:12   Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:51:12   Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820229 sha256=2e9c126df114332e88c16a90d99ac8afc0b7bfbf74130c58e1e08d201942d106
09:51:12   Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
09:51:12 Successfully built omero-web
09:51:12 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
09:52:13 
09:52:13 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
09:52:13 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:52:13 --2026-08-02 09:52:13--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:52:13 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ...
09:52:13 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
09:52:13 HTTP request sent, awaiting response... 200 OK
09:52:13 Length: 139337 (136K) [text/plain]
09:52:13 Saving to: ‘Figure_To_Pdf.py’
09:52:13 
09:52:13      0K .......... .......... .......... .......... .......... 36% 2.78M 0s
09:52:13     50K .......... .......... .......... .......... .......... 73% 4.90M 0s
09:52:13    100K .......... .......... .......... ......               100% 7.32M=0.03s
09:52:13 
09:52:13 2026-08-02 09:52:13 (4.11 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
09:52:13 
09:52:13 + chmod 755 Figure_To_Pdf.py
09:52:13 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:52:13 + omero config set omero.db.name OMERO-server
09:52:20 + omero config set omero.db.host pg
09:52:24 + omero config set omero.db.user postgres
09:52:29 + omero config set omero.data.dir /home/omero/omero-server-data
09:52:34 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:52:38 + omero config set omero.db.poolsize 25
09:52:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:52:48 + omero config set omero.security.trustStorePassword changeit
09:52:52 + omero config set omero.mail.config true
09:52:57 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:53:01 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:53:06 + omero certificates
09:53:10 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
09:53:10 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:53:10 + '[' false = true ']'
09:53:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:53:10 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:53:10 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG            dbcommand => upgrade
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG               dbhost => localhost
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG               dbname => OMERO-server
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG               dbpass => omero
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG               dbuser => omero
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG             rootpass => omero
09:53:10 2026-08-02 09:53:10,987 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:53:10 2026-08-02 09:53:10,988 [omego.extern] INFO  Executing : omero version
09:53:15 OMERO.py version:
09:53:15 OMERO.server version:
09:53:15 5.6.3-622-9dcf70e17e-ice36-b31
09:53:15 5.23.1.dev0
09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO  Completed [4.571 s]
09:53:15 2026-08-02 09:53:15,559 [omego.extern] DEBUG Using omero CLI from omero
09:53:15 2026-08-02 09:53:15,559 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:53:15 2026-08-02 09:53:15,559 [omego.extern] INFO  Executing : omero config get --show-password
09:53:20 2026-08-02 09:53:20,172 [omego.extern] INFO  Completed [4.613 s]
09:53:20 2026-08-02 09:53:20,172 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:53:20 2026-08-02 09:53:20,173 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:53:20 2026-08-02 09:53:20,178 [omego.extern] INFO  Completed [0.006 s]
09:53:20 2026-08-02 09:53:20,178 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
09:53:20 2026-08-02 09:53:20,179 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.14
09:53:20 
09:53:20 2026-08-02 09:53:20,179 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:53:20 2026-08-02 09:53:20,179 [omego.extern] INFO  Executing : omero config get --show-password
09:53:24 2026-08-02 09:53:24,779 [omego.extern] INFO  Completed [4.601 s]
09:53:24 2026-08-02 09:53:24,779 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:53:24 2026-08-02 09:53:24,780 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO  Completed [0.015 s]
09:53:24 2026-08-02 09:53:24,795 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n'
09:53:24 2026-08-02 09:53:24,795 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:53:24 2026-08-02 09:53:24,795 [omego.extern] INFO  Executing : omero config get --show-password
09:53:29 2026-08-02 09:53:29,119 [omego.extern] INFO  Completed [4.324 s]
09:53:29 2026-08-02 09:53:29,119 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:53:29 2026-08-02 09:53:29,119 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:53:29 2026-08-02 09:53:29,140 [omego.extern] INFO  Completed [0.021 s]
09:53:29 2026-08-02 09:53:29,140 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:53:29 2026-08-02 09:53:29,140 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
09:53:29 2026-08-02 09:53:29,180 [    omego.db] INFO  Database is already at OMERO5.4__0
09:53:29 + export LANG=en_US.UTF-8
09:53:29 + LANG=en_US.UTF-8
09:53:29 + export LANGUAGE=en_US:en
09:53:29 + LANGUAGE=en_US:en
09:53:29 + export LC_ALL=en_US.UTF-8
09:53:29 + LC_ALL=en_US.UTF-8
09:53:29 + BUILD_ID=DONT_KILL_ME
09:53:29 + omero admin start
09:53:39 No descriptor given. Using etc/grid/default.xml
09:53:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:53:55 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:53:55 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:53:55 Waiting on startup. Use CTRL-C to exit
09:53:55 + omero admin waitup
09:54:00 Waiting on startup. Use CTRL-C to exit
09:54:00 + omero admin diagnostics
09:54:05 
09:54:05 ================================================================================
09:54:05 OMERO Diagnostics (admin)
09:54:05 ================================================================================
09:54:05         
09:54:05 Commands:   java -version                  21.0.12   (/usr/bin/java)
09:54:05 Commands:   python -V                      3.11.13   (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:54:05 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
09:54:05 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
09:54:05 Commands:   psql --version                 16.14     (/usr/bin/psql)
09:54:05 Commands:   openssl version                3.5.527   (/usr/bin/openssl)
09:54:05 
09:54:05 Component:  OMERO.py                       5.23.1.dev0
09:54:05 Component:  OMERO.server                   5.6.3-622-9dcf70e17e-ice36-b31
09:54:05 
09:54:05 Server:     icegridnode                    running
09:54:05 Server:     Blitz-0                        active (pid = 29019, enabled)
09:54:05 Server:     Indexer-0                      active (pid = 29062, enabled)
09:54:05 Server:     OMERO.Glacier2                 active (pid = 29039, enabled)
09:54:05 Server:     OMERO.IceStorm                 active (pid = 29044, enabled)
09:54:05 Server:     Processor-0                    active (pid = 29082, enabled)
09:54:05 Server:     Tables-0                       active (pid = 29064, enabled)
09:54:05 
09:54:05 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:54:05 Log files:  Blitz-0.log                    32.2 KB       errors=0    warnings=1   
09:54:05 Log files:  DropBox.log                    n/a
09:54:05 Log files:  FileServer.log                 n/a
09:54:05 Log files:  Indexer-0.log                  2.6 KB       
09:54:05 Log files:  MonitorServer.log              n/a
09:54:05 Log files:  Processor-0.log                735 B        
09:54:05 Log files:  Tables-0.log                   961 B        
09:54:05 Log files:  TestDropBox.log                n/a
09:54:05 Log files:  master.err                     empty
09:54:05 Log files:  master.out                     30.5 KB      
09:54:05 Log files:  Total size                     0.07 MB
09:54:05 
09:54:05 
09:54:05 Environment:OMERO_HOME=(unset)             
09:54:05 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
09:54:05 Environment:OMERO_NODE=(unset)             
09:54:05 Environment:OMERO_MASTER=(unset)           
09:54:05 Environment:OMERO_USERDIR=(unset)          
09:54:05 Environment:OMERO_TMPDIR=(unset)           
09:54:05 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
09:54:05 Environment:PYTHONPATH=(unset)             
09:54:05 Environment:ICE_HOME=/opt/ice-3.6.5        
09:54:05 Environment:LD_LIBRARY_PATH=(unset)        
09:54:05 Environment:DYLD_LIBRARY_PATH=(unset)      
09:54:05 
09:54:05 OMERO SSL port:4064                           
09:54:05 OMERO TCP port:4063                           
09:54:05 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
09:54:05 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
09:54:05 
09:54:05 JVM settings: Blitz-${index}                -Xmx7200m
09:54:05 JVM settings: Indexer-${index}              -Xmx4800m
09:54:05 JVM settings: PixelData-${index}            -Xmx7200m
09:54:05 JVM settings: Repository-${index}           -Xmx4800m
09:54:05 
09:54:05 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
09:54:05 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
09:54:05 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
09:54:05 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.3	26 February 2026	70fd9b72a9834f1af4852c1e5b5676c57a2c360e
09:54:05 Jar:        lib/server/ome-common.jar      OME Common Java	6.2.1	27 February 2026	a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
09:54:05 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5	30 June 2025	257a1c1410c0103485248d05752a5174262a38b6
09:54:05 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4	25 June 2025	57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
09:54:05 Jar:        lib/server/ome-poi.jar         OME POI	5.3.11	11 November 2025	a2f3944ac71db9e7e51a6f64ec46beeb60613afb
09:54:05 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.3	22 January 2026	21d1362abd9ce26e13888d2b2d028753d21ac96e
09:54:05 Jar:        lib/server/omero-blitz.jar     jar	5.8.6-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-common.jar    jar	5.7.6-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-gateway.jar   jar	5.11.1-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-model.jar     jar	5.7.6-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-renderer.jar  jar	5.6.6-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-romio.jar     jar	5.8.6-SNAPSHOT		
09:54:05 Jar:        lib/server/omero-server.jar    jar	5.7.6-SNAPSHOT		
09:54:05 + deactivate
09:54:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:54:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:54:05 + export PATH
09:54:05 + unset _OLD_VIRTUAL_PATH
09:54:05 + '[' -n '' ']'
09:54:05 + hash -r
09:54:05 + '[' -n '' ']'
09:54:05 + unset VIRTUAL_ENV
09:54:05 + unset VIRTUAL_ENV_PROMPT
09:54:05 + '[' '!' '' = nondestructive ']'
09:54:05 + unset -f deactivate
09:54:06 Finished: SUCCESS