20:10:24 Started by user devspace
20:10:24 Running as SYSTEM
20:10:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
20:10:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10500744317782343363.sh
20:10:24 + source /home/settings.env
20:10:24 ++ OMERO_DB_HOST=pg
20:10:24 ++ OMERO_DB_USER=postgres
20:10:24 ++ OMERO_DB_PASS=
20:10:24 ++ OMERO_ROOT_PASS=omero
20:10:24 ++ OMERO_DATA_DIR=/OMERO
20:10:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:10:24 + OMERO_DB_NAME=OMERO-server
20:10:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:10:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:10:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:10:24 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:10:24 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
20:10:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:10:24 ++ deactivate nondestructive
20:10:24 ++ '[' -n '' ']'
20:10:24 ++ '[' -n '' ']'
20:10:24 ++ hash -r
20:10:24 ++ '[' -n '' ']'
20:10:24 ++ unset VIRTUAL_ENV
20:10:24 ++ unset VIRTUAL_ENV_PROMPT
20:10:24 ++ '[' '!' nondestructive = nondestructive ']'
20:10:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:10:24 ++ export VIRTUAL_ENV
20:10:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:10:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:10:24 ++ export PATH
20:10:24 ++ '[' -n '' ']'
20:10:24 ++ '[' -z '' ']'
20:10:24 ++ _OLD_VIRTUAL_PS1=
20:10:24 ++ PS1='(.venv3) '
20:10:24 ++ export PS1
20:10:24 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
20:10:24 ++ export VIRTUAL_ENV_PROMPT
20:10:24 ++ hash -r
20:10:24 + omero admin stop
20:10:25 Waiting on shutdown. Use CTRL-C to exit
20:10:25 .+ sleep 5
20:10:40 + deactivate
20:10:40 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:10:40 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:10:40 + export PATH
20:10:40 + unset _OLD_VIRTUAL_PATH
20:10:40 + '[' -n '' ']'
20:10:40 + hash -r
20:10:40 + '[' -n '' ']'
20:10:40 + unset VIRTUAL_ENV
20:10:40 + unset VIRTUAL_ENV_PROMPT
20:10:40 + '[' '!' '' = nondestructive ']'
20:10:40 + unset -f deactivate
20:10:40 + rm -rf /home/omero/workspace/OMERO-server/.venv3
20:10:41 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
20:10:44 + '[' false = true ']'
20:10:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
20:10:44 Skipping PURGE_DATA:CleanDbAndRepo
20:10:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer /home/omero/workspace/OMERO-server/version.properties
20:10:46 Copied 1 artifact from "OMERO-build" build number 17
20:10:46 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 17
20:10:46 Copied 2 artifacts from "OMERO-build-build" build number 20
20:10:46 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 12
20:10:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14918070631742990723.sh
20:10:46 + source /home/settings.env
20:10:46 ++ OMERO_DB_HOST=pg
20:10:46 ++ OMERO_DB_USER=postgres
20:10:46 ++ OMERO_DB_PASS=
20:10:46 ++ OMERO_ROOT_PASS=omero
20:10:46 ++ OMERO_DATA_DIR=/OMERO
20:10:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:10:46 + OMERO_DB_NAME=OMERO-server
20:10:46 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:10:46 + mkdir -p /home/omero/omero-server-data
20:10:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:10:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:10:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:10:46 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:10:46 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:10:46 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:10:46 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:10:46 ++ ls OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
20:10:46 + ZIP=OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
20:10:46 + '[' '!' -z '' ']'
20:10:46 + DIST=OMERO.server-5.6.3-578-31c47ae256-ice36-b17
20:10:46 + unzip OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
20:10:46 Archive: OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/grid/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/profiles/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/error/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/janelia/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/matplotlib/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/ncsa_paledit/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/seaborn/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/luts/wcif/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/analysis_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/annotation_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/export_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/figure_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/import_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/scripts/omero/util_scripts/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/server/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/share/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/share/licenses/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/misc/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__1/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__10/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__11/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__2/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__3/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__4/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__5/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__6/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__7/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__8/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3A__9/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__4/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__5/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__6/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO3__7/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.1__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.2__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.2__0/t/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.3__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4.4__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO4__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.0__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.1__1/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.2__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.3__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__1/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__2/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4DEV__3/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/var/
20:10:46 creating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/var/tmp/
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/LICENSE.txt
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/backup.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/mail-senders.example
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/blitz/mail-server.example
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/build.properties
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/env.bat
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/env.sh
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/hibernate.properties
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/ice.config
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-cli.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-indexing-cli.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback-indexing.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/logback.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/mime.types
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/node1.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/node2.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/omero.properties
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/profiles/psql
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/rollover.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/Windows.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/error/maintainance.html
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/README
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/default.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/templates.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/grid/windefault.xml
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/ice.config
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/internal.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/master.cfg
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/templates/robot.template
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/etc/testdropbox.config
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/history.rst
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/OMEZarrReader.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/accessors-smart.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/activation.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aggdesigner-algorithm.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aircompressor.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/antlr.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aopalliance.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/apiguardian-api.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/asm.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/avatica-core.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/avatica-metrics.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-core.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-kms.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/aws-java-sdk-s3.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/base.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-anim.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-awt-util.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-bridge.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-codec.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-constants.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-css.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-dom.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-ext.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-gvt.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-i18n.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-parser.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-script.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-shared-resources.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-svg-dom.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-svggen.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-transcoder.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-util.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/batik-xml.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/btm.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/calcite-core.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/calcite-linq4j.jar
20:10:46 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/cdm-core.jar
20:10:47 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/checker-qual.jar
20:10:47 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-beanutils.jar
20:10:47 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-codec.jar
20:10:47 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/lib/client/commons-collections.jar
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20:10:49 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
20:10:49 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/psql-footer.sql
20:10:49 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/psql-header.sql
20:10:49 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/schema.sql
20:10:49 inflating: OMERO.server-5.6.3-578-31c47ae256-ice36-b17/sql/psql/OMERO5.4__0/views.sql
20:10:49 + rm -f OMERO.server-5.6.3-578-31c47ae256-ice36-b17.zip
20:10:49 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-31c47ae256-ice36-b17 /home/omero/workspace/OMERO-server/OMERO.server
20:10:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
20:10:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:10:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:10:49 --2026-01-13 20:10:49-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
20:10:49 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
20:10:49 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
20:10:49 HTTP request sent, awaiting response... 200 OK
20:10:49 Length: 889211 (868K) [application/java-archive]
20:10:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
20:10:49
20:10:49 0K .......... .......... .......... .......... .......... 5% 32.7M 0s
20:10:49 50K .......... .......... .......... .......... .......... 11% 3.57M 0s
20:10:49 100K .......... .......... .......... .......... .......... 17% 3.91M 0s
20:10:49 150K .......... .......... .......... .......... .......... 23% 47.7M 0s
20:10:49 200K .......... .......... .......... .......... .......... 28% 167M 0s
20:10:49 250K .......... .......... .......... .......... .......... 34% 61.4M 0s
20:10:49 300K .......... .......... .......... .......... .......... 40% 65.5M 0s
20:10:49 350K .......... .......... .......... .......... .......... 46% 4.21M 0s
20:10:49 400K .......... .......... .......... .......... .......... 51% 295M 0s
20:10:49 450K .......... .......... .......... .......... .......... 57% 43.6M 0s
20:10:49 500K .......... .......... .......... .......... .......... 63% 309M 0s
20:10:49 550K .......... .......... .......... .......... .......... 69% 56.4M 0s
20:10:49 600K .......... .......... .......... .......... .......... 74% 4.28M 0s
20:10:49 650K .......... .......... .......... .......... .......... 80% 44.0M 0s
20:10:49 700K .......... .......... .......... .......... .......... 86% 274M 0s
20:10:49 750K .......... .......... .......... .......... .......... 92% 61.0M 0s
20:10:49 800K .......... .......... .......... .......... .......... 97% 276M 0s
20:10:49 850K .......... ........ 100% 30.9M=0.06s
20:10:49
20:10:49 2026-01-13 20:10:49 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
20:10:49
20:10:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
20:10:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:10:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:10:49 --2026-01-13 20:10:49-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
20:10:49 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
20:10:49 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
20:10:49 HTTP request sent, awaiting response... 200 OK
20:10:49 Length: 73309 (72K) [application/java-archive]
20:10:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
20:10:49
20:10:49 0K .......... .......... .......... .......... .......... 69% 31.5M 0s
20:10:49 50K .......... .......... . 100% 1.69M=0.01s
20:10:49
20:10:49 2026-01-13 20:10:49 (4.97 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
20:10:49
20:10:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
20:10:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:10:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:10:49 --2026-01-13 20:10:49-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
20:10:49 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
20:10:49 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
20:10:50 HTTP request sent, awaiting response... 200 OK
20:10:50 Length: 63303 (62K) [application/java-archive]
20:10:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
20:10:50
20:10:50 0K .......... .......... .......... .......... .......... 80% 33.2M 0s
20:10:50 50K .......... . 100% 183M=0.002s
20:10:50
20:10:50 2026-01-13 20:10:50 (39.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
20:10:50
20:10:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
20:10:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:10:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:10:50 --2026-01-13 20:10:50-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
20:10:50 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
20:10:50 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
20:10:50 HTTP request sent, awaiting response... 200 OK
20:10:50 Length: 1271272 (1.2M) [application/java-archive]
20:10:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
20:10:50
20:10:50 0K .......... .......... .......... .......... .......... 4% 3.32M 0s
20:10:50 50K .......... .......... .......... .......... .......... 8% 7.58M 0s
20:10:50 100K .......... .......... .......... .......... .......... 12% 4.84M 0s
20:10:50 150K .......... .......... .......... .......... .......... 16% 10.4M 0s
20:10:50 200K .......... .......... .......... .......... .......... 20% 12.8M 0s
20:10:50 250K .......... .......... .......... .......... .......... 24% 10.8M 0s
20:10:50 300K .......... .......... .......... .......... .......... 28% 18.1M 0s
20:10:50 350K .......... .......... .......... .......... .......... 32% 17.1M 0s
20:10:50 400K .......... .......... .......... .......... .......... 36% 17.8M 0s
20:10:50 450K .......... .......... .......... .......... .......... 40% 25.2M 0s
20:10:50 500K .......... .......... .......... .......... .......... 44% 14.5M 0s
20:10:50 550K .......... .......... .......... .......... .......... 48% 13.0M 0s
20:10:50 600K .......... .......... .......... .......... .......... 52% 26.7M 0s
20:10:50 650K .......... .......... .......... .......... .......... 56% 17.0M 0s
20:10:50 700K .......... .......... .......... .......... .......... 60% 22.5M 0s
20:10:50 750K .......... .......... .......... .......... .......... 64% 15.7M 0s
20:10:50 800K .......... .......... .......... .......... .......... 68% 13.0M 0s
20:10:50 850K .......... .......... .......... .......... .......... 72% 17.4M 0s
20:10:50 900K .......... .......... .......... .......... .......... 76% 27.2M 0s
20:10:50 950K .......... .......... .......... .......... .......... 80% 20.2M 0s
20:10:50 1000K .......... .......... .......... .......... .......... 84% 16.9M 0s
20:10:50 1050K .......... .......... .......... .......... .......... 88% 11.9M 0s
20:10:50 1100K .......... .......... .......... .......... .......... 92% 18.9M 0s
20:10:50 1150K .......... .......... .......... .......... .......... 96% 29.4M 0s
20:10:50 1200K .......... .......... .......... .......... . 100% 16.8M=0.1s
20:10:50
20:10:50 2026-01-13 20:10:50 (12.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
20:10:50
20:10:50 + ls
20:10:50 omero-blitz-5.8.4-SNAPSHOT-python.zip
20:10:50 omero_dropbox-5.7.1.dev0.tar.gz
20:10:50 omero_marshal-0.9.2.dev0.tar.gz
20:10:50 omero_py-5.22.0.dev0.tar.gz
20:10:50 omero_scripts-5.9.2.dev0.tar.gz
20:10:50 OMERO.server
20:10:50 omero_web-5.30.2.dev0.tar.gz
20:10:50 omero-zarr-pixel-buffer
20:10:50 version.properties
20:10:50 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:10:50 ++ deactivate nondestructive
20:10:50 ++ '[' -n '' ']'
20:10:50 ++ '[' -n '' ']'
20:10:50 ++ hash -r
20:10:50 ++ '[' -n '' ']'
20:10:50 ++ unset VIRTUAL_ENV
20:10:50 ++ unset VIRTUAL_ENV_PROMPT
20:10:50 ++ '[' '!' nondestructive = nondestructive ']'
20:10:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:10:50 ++ export VIRTUAL_ENV
20:10:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:10:50 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:10:50 ++ export PATH
20:10:50 ++ '[' -n '' ']'
20:10:50 ++ '[' -z '' ']'
20:10:50 ++ _OLD_VIRTUAL_PS1=
20:10:50 ++ PS1='(.venv3) '
20:10:50 ++ export PS1
20:10:50 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
20:10:50 ++ export VIRTUAL_ENV_PROMPT
20:10:50 ++ hash -r
20:10:50 + pip install -U pip
20:10:50 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
20:10:50 Collecting pip
20:10:50 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
20:10:50 Installing collected packages: pip
20:10:50 Attempting uninstall: pip
20:10:50 Found existing installation: pip 22.3.1
20:10:51 Uninstalling pip-22.3.1:
20:10:51 Successfully uninstalled pip-22.3.1
20:10:52 Successfully installed pip-25.3
20:10:52 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
20:10:52 Collecting zeroc-ice==3.6.5
20:10:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
20:10:54 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.4 MB/s 0:00:01
20:10:54 Installing collected packages: zeroc-ice
20:10:55 Successfully installed zeroc-ice-3.6.5
20:10:55 + pip install markdown
20:10:55 Collecting markdown
20:10:55 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
20:10:55 Using cached markdown-3.10-py3-none-any.whl (107 kB)
20:10:55 Installing collected packages: markdown
20:10:55 Successfully installed markdown-3.10
20:10:56 + pip install reportlab
20:10:56 Collecting reportlab
20:10:56 Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB)
20:10:56 Collecting pillow>=9.0.0 (from reportlab)
20:10:56 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
20:10:56 Collecting charset-normalizer (from reportlab)
20:10:56 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
20:10:56 Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB)
20:10:56 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
20:10:56 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
20:10:56 Installing collected packages: pillow, charset-normalizer, reportlab
20:10:57
20:10:57 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7
20:10:57 + pip install omego
20:10:58 Collecting omego
20:10:58 Using cached omego-0.7.0-py3-none-any.whl
20:10:58 Collecting future (from omego)
20:10:58 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
20:10:58 Collecting yaclifw>=0.1.1 (from omego)
20:10:58 Using cached yaclifw-0.2.0-py3-none-any.whl
20:10:58 Collecting six (from yaclifw>=0.1.1->omego)
20:10:58 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
20:10:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
20:10:58 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
20:10:58 Installing collected packages: six, future, yaclifw, omego
20:10:58
20:10:58 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
20:10:58 + pip install tables
20:10:59 Collecting tables
20:10:59 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
20:10:59 Collecting numpy>=1.20.0 (from tables)
20:10:59 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
20:10:59 Collecting numexpr>=2.6.2 (from tables)
20:10:59 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
20:10:59 Collecting packaging (from tables)
20:10:59 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
20:10:59 Collecting py-cpuinfo (from tables)
20:10:59 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
20:10:59 Collecting blosc2>=2.3.0 (from tables)
20:10:59 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
20:10:59 Collecting typing-extensions>=4.4.0 (from tables)
20:10:59 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
20:10:59 Collecting ndindex (from blosc2>=2.3.0->tables)
20:10:59 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
20:10:59 Collecting msgpack (from blosc2>=2.3.0->tables)
20:10:59 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
20:10:59 Collecting platformdirs (from blosc2>=2.3.0->tables)
20:10:59 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
20:10:59 Collecting requests (from blosc2>=2.3.0->tables)
20:10:59 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
20:10:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
20:10:59 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
20:10:59 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
20:10:59 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
20:10:59 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
20:10:59 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
20:10:59 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
20:10:59 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
20:10:59 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
20:11:00 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
20:11:00 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
20:11:00 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
20:11:00 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
20:11:00 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
20:11:00 Using cached packaging-25.0-py3-none-any.whl (66 kB)
20:11:00 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
20:11:00 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
20:11:00 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
20:11:00 Using cached idna-3.11-py3-none-any.whl (71 kB)
20:11:00 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
20:11:00 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
20:11:00 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
20:11:03
20:11:03 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
20:11:03 + pip install jinja2
20:11:03 Collecting jinja2
20:11:03 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
20:11:03 Collecting MarkupSafe>=2.0 (from jinja2)
20:11:03 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
20:11:03 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
20:11:03 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
20:11:03 Installing collected packages: MarkupSafe, jinja2
20:11:04
20:11:04 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
20:11:04 + pip install omero-py
20:11:04 Collecting omero-py
20:11:04 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
20:11:04 Collecting appdirs (from omero-py)
20:11:04 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
20:11:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
20:11:04 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
20:11:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
20:11:04 Collecting PyYAML (from omero-py)
20:11:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
20:11:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
20:11:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
20:11:04 Collecting portalocker (from omero-py)
20:11:04 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
20:11:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
20:11:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
20:11:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
20:11:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
20:11:04 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
20:11:04 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
20:11:04 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
20:11:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
20:11:04 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
20:11:06
20:11:06 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
20:11:06 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
20:11:06 Collecting omero-metadata
20:11:06 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0n5zfmqx/omero-metadata_1650d68b483644519c9613d8b7748abf
20:11:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0n5zfmqx/omero-metadata_1650d68b483644519c9613d8b7748abf
20:11:08 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b93d0c4f51c52a2ae3038db29507e3ff5578edb6
20:11:08 Installing build dependencies: started
20:11:09 Installing build dependencies: finished with status 'done'
20:11:09 Getting requirements to build wheel: started
20:11:09 Getting requirements to build wheel: finished with status 'done'
20:11:09 Preparing metadata (pyproject.toml): started
20:11:09 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
20:11:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
20:11:09 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
20:11:10 Collecting pandas (from omero-metadata)
20:11:10 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
20:11:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
20:11:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
20:11:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
20:11:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
20:11:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
20:11:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
20:11:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
20:11:10 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
20:11:10 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
20:11:10 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
20:11:10 Collecting pytz>=2020.1 (from pandas->omero-metadata)
20:11:10 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
20:11:10 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
20:11:10 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
20:11:10 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
20:11:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
20:11:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
20:11:10 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
20:11:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
20:11:10 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
20:11:10 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
20:11:10 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
20:11:10 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
20:11:10 Building wheels for collected packages: omero-metadata
20:11:10 Building wheel for omero-metadata (pyproject.toml): started
20:11:10 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
20:11:10 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=c5d580a7d17219dce45774ec02e3724c4ff26702b8d81f860f49055c14886655
20:11:10 Stored in directory: /tmp/pip-ephem-wheel-cache-l01zr86x/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
20:11:10 Successfully built omero-metadata
20:11:10 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
20:11:15
20:11:15 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
20:11:15 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
20:11:15 Collecting omero-cli-render
20:11:15 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ugq1vxm0/omero-cli-render_fb52d553d0f0475a9bc118af5d3cc646
20:11:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ugq1vxm0/omero-cli-render_fb52d553d0f0475a9bc118af5d3cc646
20:11:16 Running command git checkout -b merge_ci --track origin/merge_ci
20:11:16 Switched to a new branch 'merge_ci'
20:11:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:11:16 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c0cae4edbf876a5cef9e459c7560575e6e68be3d
20:11:16 Installing build dependencies: started
20:11:17 Installing build dependencies: finished with status 'done'
20:11:17 Getting requirements to build wheel: started
20:11:17 Getting requirements to build wheel: finished with status 'done'
20:11:17 Preparing metadata (pyproject.toml): started
20:11:18 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
20:11:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
20:11:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
20:11:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
20:11:18 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
20:11:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
20:11:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
20:11:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
20:11:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
20:11:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
20:11:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
20:11:18 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
20:11:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
20:11:18 Building wheels for collected packages: omero-cli-render
20:11:18 Building wheel for omero-cli-render (pyproject.toml): started
20:11:20 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
20:11:20 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=6a43ad8efdd097373a8cb1172d934d5cce4b2d42b5c8ad2268b432dc1d6ed93c
20:11:20 Stored in directory: /tmp/pip-ephem-wheel-cache-g6i9k0_6/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
20:11:20 Successfully built omero-cli-render
20:11:20 Installing collected packages: omero-cli-render
20:11:21 Successfully installed omero-cli-render-0.8.2.dev0
20:11:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
20:11:21 Collecting omero-cli-duplicate
20:11:21 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-sk0orsj7/omero-cli-duplicate_e78739c876b24dd5bef4bf92f2b65b33
20:11:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-sk0orsj7/omero-cli-duplicate_e78739c876b24dd5bef4bf92f2b65b33
20:11:22 Running command git checkout -b merge_ci --track origin/merge_ci
20:11:22 Switched to a new branch 'merge_ci'
20:11:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:11:22 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e187fc15b190a303bf3b81a4cc9b00c3be68ed20
20:11:22 Installing build dependencies: started
20:11:23 Installing build dependencies: finished with status 'done'
20:11:23 Getting requirements to build wheel: started
20:11:23 Getting requirements to build wheel: finished with status 'done'
20:11:23 Preparing metadata (pyproject.toml): started
20:11:24 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:24 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
20:11:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
20:11:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
20:11:24 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
20:11:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
20:11:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
20:11:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
20:11:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
20:11:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
20:11:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
20:11:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
20:11:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
20:11:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
20:11:24 Building wheels for collected packages: omero-cli-duplicate
20:11:24 Building wheel for omero-cli-duplicate (pyproject.toml): started
20:11:24 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
20:11:24 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=f327af9d87bca064b66062630151817d890b12938ba7168808db52070baf1e56
20:11:24 Stored in directory: /tmp/pip-ephem-wheel-cache-sj15vn30/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
20:11:24 Successfully built omero-cli-duplicate
20:11:24 Installing collected packages: omero-cli-duplicate
20:11:24 Successfully installed omero-cli-duplicate-0.4.1.dev0
20:11:24 + pip install omero-certificates
20:11:24 Collecting omero-certificates
20:11:24 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
20:11:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
20:11:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
20:11:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
20:11:24 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
20:11:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
20:11:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
20:11:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
20:11:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
20:11:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
20:11:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
20:11:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
20:11:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
20:11:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
20:11:24 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
20:11:24 Installing collected packages: omero-certificates
20:11:24 Successfully installed omero-certificates-0.4.0
20:11:25 + for x in *.tar.gz
20:11:25 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
20:11:25 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
20:11:25 Installing build dependencies: started
20:11:26 Installing build dependencies: finished with status 'done'
20:11:26 Getting requirements to build wheel: started
20:11:26 Getting requirements to build wheel: finished with status 'done'
20:11:26 Preparing metadata (pyproject.toml): started
20:11:26 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:26 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
20:11:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
20:11:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
20:11:26 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
20:11:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
20:11:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
20:11:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
20:11:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
20:11:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
20:11:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
20:11:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
20:11:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
20:11:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
20:11:26 Building wheels for collected packages: omero-dropbox
20:11:26 Building wheel for omero-dropbox (pyproject.toml): started
20:11:26 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
20:11:26 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=f701562d698df020f2fc8c531e347f2f770331e527343cc6689b767591527d77
20:11:26 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
20:11:26 Successfully built omero-dropbox
20:11:26 Installing collected packages: omero-dropbox
20:11:26 Successfully installed omero-dropbox-5.7.1.dev0
20:11:27 + for x in *.tar.gz
20:11:27 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
20:11:27 Processing ./omero_marshal-0.9.2.dev0.tar.gz
20:11:27 Installing build dependencies: started
20:11:28 Installing build dependencies: finished with status 'done'
20:11:28 Getting requirements to build wheel: started
20:11:28 Getting requirements to build wheel: finished with status 'done'
20:11:28 Preparing metadata (pyproject.toml): started
20:11:28 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:28 Building wheels for collected packages: omero_marshal
20:11:28 Building wheel for omero_marshal (pyproject.toml): started
20:11:28 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
20:11:28 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=a318003b3749572684bcf049f793a5fa663e6c03a1ae455b24db939d6635cfc4
20:11:28 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
20:11:28 Successfully built omero_marshal
20:11:29 Installing collected packages: omero_marshal
20:11:29 Successfully installed omero_marshal-0.9.2.dev0
20:11:29 + for x in *.tar.gz
20:11:29 + pip install -U omero_py-5.22.0.dev0.tar.gz
20:11:29 Processing ./omero_py-5.22.0.dev0.tar.gz
20:11:29 Installing build dependencies: started
20:11:30 Installing build dependencies: finished with status 'done'
20:11:30 Getting requirements to build wheel: started
20:11:30 Getting requirements to build wheel: finished with status 'done'
20:11:30 Preparing metadata (pyproject.toml): started
20:11:31 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
20:11:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
20:11:31 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
20:11:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
20:11:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
20:11:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
20:11:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
20:11:31 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
20:11:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
20:11:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
20:11:31 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
20:11:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
20:11:31 Building wheels for collected packages: omero-py
20:11:31 Building wheel for omero-py (pyproject.toml): started
20:11:32 Building wheel for omero-py (pyproject.toml): finished with status 'done'
20:11:32 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2785928 sha256=f8ce3dc39f5f219513e06caad3dffc0cad620c568849dae36e64130360b43e0a
20:11:32 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
20:11:32 Successfully built omero-py
20:11:32 Installing collected packages: omero-py
20:11:32 Attempting uninstall: omero-py
20:11:32 Found existing installation: omero-py 5.21.3
20:11:32 Uninstalling omero-py-5.21.3:
20:11:32 Successfully uninstalled omero-py-5.21.3
20:11:34 Successfully installed omero-py-5.22.0.dev0
20:11:34 + for x in *.tar.gz
20:11:34 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
20:11:34 Processing ./omero_scripts-5.9.2.dev0.tar.gz
20:11:34 Installing build dependencies: started
20:11:35 Installing build dependencies: finished with status 'done'
20:11:35 Getting requirements to build wheel: started
20:11:35 Getting requirements to build wheel: finished with status 'done'
20:11:35 Preparing metadata (pyproject.toml): started
20:11:36 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:36 Building wheels for collected packages: omero-scripts
20:11:36 Building wheel for omero-scripts (pyproject.toml): started
20:11:36 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
20:11:36 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=bbcd36324970d8150d4c9bdaa026d4ebc3bcbbf6017d68851e840da40dd9e1c0
20:11:36 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
20:11:36 Successfully built omero-scripts
20:11:36 Installing collected packages: omero-scripts
20:11:36 Successfully installed omero-scripts-5.9.2.dev0
20:11:36 + for x in *.tar.gz
20:11:36 + pip install -U omero_web-5.30.2.dev0.tar.gz
20:11:36 Processing ./omero_web-5.30.2.dev0.tar.gz
20:11:37 Installing build dependencies: started
20:11:38 Installing build dependencies: finished with status 'done'
20:11:38 Getting requirements to build wheel: started
20:11:38 Getting requirements to build wheel: finished with status 'done'
20:11:38 Preparing metadata (pyproject.toml): started
20:11:38 Preparing metadata (pyproject.toml): finished with status 'done'
20:11:38 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
20:11:38 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
20:11:38 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
20:11:38 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
20:11:38 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
20:11:38 Collecting django-pipeline (from omero-web==5.30.2.dev0)
20:11:38 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
20:11:38 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
20:11:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
20:11:38 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
20:11:38 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
20:11:38 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
20:11:38 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
20:11:38 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
20:11:38 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
20:11:38 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
20:11:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
20:11:38 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
20:11:39 Collecting importlib-resources (from omero-web==5.30.2.dev0)
20:11:39 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
20:11:39 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
20:11:39 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
20:11:39 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
20:11:39 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
20:11:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
20:11:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
20:11:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
20:11:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
20:11:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
20:11:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
20:11:39 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
20:11:39 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
20:11:39 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
20:11:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
20:11:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
20:11:39 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
20:11:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
20:11:39 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
20:11:39 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
20:11:39 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
20:11:39 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
20:11:39 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
20:11:39 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
20:11:39 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
20:11:39 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
20:11:39 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
20:11:39 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
20:11:39 Building wheels for collected packages: omero-web
20:11:39 Building wheel for omero-web (pyproject.toml): started
20:11:40 Building wheel for omero-web (pyproject.toml): finished with status 'done'
20:11:40 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819190 sha256=85c6de97527f7320f1f5d167a59565ad9c2e9ec72fddf68a236b7c859c76f07d
20:11:40 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
20:11:40 Successfully built omero-web
20:11:40 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
20:11:42
20:11:42 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
20:11:43 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:11:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:11:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:11:43 --2026-01-13 20:11:43-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:11:43 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.111.133, ...
20:11:43 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
20:11:43 HTTP request sent, awaiting response... 200 OK
20:11:43 Length: 129235 (126K) [text/plain]
20:11:43 Saving to: ‘Figure_To_Pdf.py’
20:11:43
20:11:43 0K .......... .......... .......... .......... .......... 39% 3.92M 0s
20:11:43 50K .......... .......... .......... .......... .......... 79% 5.79M 0s
20:11:43 100K .......... .......... ...... 100% 39.1M=0.02s
20:11:43
20:11:43 2026-01-13 20:11:43 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [129235/129235]
20:11:43
20:11:43 + chmod 755 Figure_To_Pdf.py
20:11:43 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
20:11:43 + omero config set omero.db.name OMERO-server
20:11:44 + omero config set omero.db.host pg
20:11:45 + omero config set omero.db.user postgres
20:11:46 + omero config set omero.data.dir /home/omero/omero-server-data
20:11:47 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
20:11:49 + omero config set omero.db.poolsize 25
20:11:50 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
20:11:51 + omero config set omero.security.trustStorePassword changeit
20:11:52 + omero config set omero.mail.config true
20:11:53 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
20:11:54 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
20:11:55 + omero certificates
20:11:56 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
20:11:56 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
20:11:57 + '[' false = true ']'
20:11:57 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
20:11:57 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
20:11:57 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG dbcommand => upgrade
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG dbhost => localhost
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG dbname => OMERO-server
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG dbpass => omero
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG dbuser => omero
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG rootpass => omero
20:11:57 2026-01-13 20:11:57,210 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
20:11:57 2026-01-13 20:11:57,211 [omego.extern] INFO Executing : omero version
20:11:58 OMERO.py version:
20:11:58 OMERO.server version:
20:11:58 5.6.3-578-31c47ae256-ice36-b17
20:11:58 5.22.0.dev0
20:11:58 2026-01-13 20:11:58,419 [omego.extern] INFO Completed [1.209 s]
20:11:58 2026-01-13 20:11:58,420 [omego.extern] DEBUG Using omero CLI from omero
20:11:58 2026-01-13 20:11:58,420 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
20:11:58 2026-01-13 20:11:58,420 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:11:58 2026-01-13 20:11:58,420 [omego.extern] INFO Executing : omero config get --show-password
20:11:59 2026-01-13 20:11:59,607 [omego.extern] INFO Completed [1.187 s]
20:11:59 2026-01-13 20:11:59,607 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:11:59 2026-01-13 20:11:59,607 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
20:11:59 2026-01-13 20:11:59,613 [omego.extern] INFO Completed [0.006 s]
20:11:59 2026-01-13 20:11:59,613 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
20:11:59 2026-01-13 20:11:59,613 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
20:11:59
20:11:59 2026-01-13 20:11:59,613 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:11:59 2026-01-13 20:11:59,613 [omego.extern] INFO Executing : omero config get --show-password
20:12:00 2026-01-13 20:12:00,748 [omego.extern] INFO Completed [1.134 s]
20:12:00 2026-01-13 20:12:00,748 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:12:00 2026-01-13 20:12:00,748 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
20:12:00 2026-01-13 20:12:00,757 [omego.extern] INFO Completed [0.009 s]
20:12:00 2026-01-13 20:12:00,757 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n'
20:12:00 2026-01-13 20:12:00,757 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:12:00 2026-01-13 20:12:00,757 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:12:00 2026-01-13 20:12:00,757 [omego.extern] INFO Executing : omero config get --show-password
20:12:01 2026-01-13 20:12:01,889 [omego.extern] INFO Completed [1.132 s]
20:12:01 2026-01-13 20:12:01,889 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:12:01 2026-01-13 20:12:01,890 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:12:01 2026-01-13 20:12:01,899 [omego.extern] INFO Completed [0.009 s]
20:12:01 2026-01-13 20:12:01,899 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
20:12:01 2026-01-13 20:12:01,899 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
20:12:01 2026-01-13 20:12:01,900 [ omego.db] INFO Database is already at OMERO5.4__0
20:12:01 + export LANG=en_US.UTF-8
20:12:01 + LANG=en_US.UTF-8
20:12:01 + export LANGUAGE=en_US:en
20:12:01 + LANGUAGE=en_US:en
20:12:01 + export LC_ALL=en_US.UTF-8
20:12:01 + LC_ALL=en_US.UTF-8
20:12:01 + BUILD_ID=DONT_KILL_ME
20:12:01 + omero admin start
20:12:06 No descriptor given. Using etc/grid/default.xml
20:12:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
20:12:16 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
20:12:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
20:12:16 Waiting on startup. Use CTRL-C to exit
20:12:16 + omero admin waitup
20:12:17 Waiting on startup. Use CTRL-C to exit
20:12:18 + omero admin diagnostics
20:12:19
20:12:19 ================================================================================
20:12:19 OMERO Diagnostics (admin)
20:12:19 ================================================================================
20:12:19
20:12:19 Commands: java -version 17.0.17 (/usr/bin/java)
20:12:19 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
20:12:19 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
20:12:19 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
20:12:19 Commands: psql --version 16.11 (/usr/bin/psql)
20:12:19 Commands: openssl version 3.5.11 (/usr/bin/openssl)
20:12:19
20:12:19 Component: OMERO.py 5.22.0.dev0
20:12:19 Component: OMERO.server 5.6.3-578-31c47ae256-ice36-b17
20:12:19
20:12:19 Server: icegridnode running
20:12:19 Server: Blitz-0 active (pid = 132128, enabled)
20:12:19 Server: Indexer-0 activating (enabled)
20:12:19 Server: OMERO.Glacier2 active (pid = 132161, enabled)
20:12:19 Server: OMERO.IceStorm active (pid = 132178, enabled)
20:12:19 Server: Processor-0 active (pid = 132189, enabled)
20:12:19 Server: Tables-0 active (pid = 132206, enabled)
20:12:19
20:12:19 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
20:12:19 Log files: Blitz-0.log 32.1 KB errors=0 warnings=1
20:12:19 Log files: DropBox.log n/a
20:12:19 Log files: FileServer.log n/a
20:12:19 Log files: Indexer-0.log 598 B
20:12:19 Log files: MonitorServer.log n/a
20:12:19 Log files: Processor-0.log 735 B
20:12:19 Log files: Tables-0.log 961 B
20:12:19 Log files: TestDropBox.log n/a
20:12:19 Log files: master.err empty
20:12:19 Log files: master.out 30.5 KB
20:12:19 Log files: Total size 0.06 MB
20:12:19
20:12:19
20:12:19 Environment:OMERO_HOME=(unset)
20:12:19 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:12:19 Environment:OMERO_NODE=(unset)
20:12:19 Environment:OMERO_MASTER=(unset)
20:12:19 Environment:OMERO_USERDIR=(unset)
20:12:19 Environment:OMERO_TMPDIR=(unset)
20:12:19 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:12:19 Environment:PYTHONPATH=(unset)
20:12:19 Environment:ICE_HOME=/opt/ice-3.6.5
20:12:19 Environment:LD_LIBRARY_PATH=(unset)
20:12:19 Environment:DYLD_LIBRARY_PATH=(unset)
20:12:19
20:12:19 OMERO SSL port:4064
20:12:19 OMERO TCP port:4063
20:12:19 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
20:12:19 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
20:12:19
20:12:19 JVM settings: Blitz-${index} -Xmx7200m
20:12:19 JVM settings: Indexer-${index} -Xmx4800m
20:12:19 JVM settings: PixelData-${index} -Xmx7200m
20:12:19 JVM settings: Repository-${index} -Xmx4800m
20:12:19
20:12:19 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
20:12:19 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
20:12:19 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 13 January 2026 0d988788af3c196d8fd23672119bd8527c975ae5
20:12:19 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 13 January 2026 88107bf2f599560081918f71ba8a1dd20f6f89be
20:12:19 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
20:12:19 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
20:12:19 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
20:12:19 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
20:12:19 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
20:12:19 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
20:12:19 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
20:12:19 + deactivate
20:12:19 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:12:19 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:12:19 + export PATH
20:12:19 + unset _OLD_VIRTUAL_PATH
20:12:19 + '[' -n '' ']'
20:12:19 + hash -r
20:12:19 + '[' -n '' ']'
20:12:19 + unset VIRTUAL_ENV
20:12:19 + unset VIRTUAL_ENV_PROMPT
20:12:19 + '[' '!' '' = nondestructive ']'
20:12:19 + unset -f deactivate
20:12:19 Finished: SUCCESS
