17:07:14 Started by upstream project "Trigger" build number 395
17:07:14 originally caused by:
17:07:14 Started by timer
17:07:14 Running as SYSTEM
17:07:14 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
17:07:14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9459365193953568513.sh
17:07:15 + source /home/settings.env
17:07:15 ++ OMERO_DB_HOST=pg
17:07:15 ++ OMERO_DB_USER=postgres
17:07:15 ++ OMERO_DB_PASS=
17:07:15 ++ OMERO_ROOT_PASS=omero
17:07:15 ++ OMERO_DATA_DIR=/OMERO
17:07:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
17:07:15 + OMERO_DB_NAME=OMERO-server
17:07:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
17:07:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
17:07:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
17:07:15 + OMERO_DATA_DIR=/home/omero/omero-server-data
17:07:15 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
17:07:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
17:07:15 ++ deactivate nondestructive
17:07:15 ++ '[' -n '' ']'
17:07:15 ++ '[' -n '' ']'
17:07:15 ++ '[' -n /bin/bash -o -n '' ']'
17:07:15 ++ hash -r
17:07:15 ++ '[' -n '' ']'
17:07:15 ++ unset VIRTUAL_ENV
17:07:15 ++ '[' '!' nondestructive = nondestructive ']'
17:07:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
17:07:15 ++ export VIRTUAL_ENV
17:07:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:07:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:07:15 ++ export PATH
17:07:15 ++ '[' -n '' ']'
17:07:15 ++ '[' -z '' ']'
17:07:15 ++ _OLD_VIRTUAL_PS1=
17:07:15 ++ PS1='(.venv3) '
17:07:15 ++ export PS1
17:07:15 ++ '[' -n /bin/bash -o -n '' ']'
17:07:15 ++ hash -r
17:07:15 + omero admin stop
17:07:27 Waiting on shutdown. Use CTRL-C to exit
17:07:27 .+ sleep 5
17:07:42 + deactivate
17:07:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
17:07:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:07:42 + export PATH
17:07:42 + unset _OLD_VIRTUAL_PATH
17:07:42 + '[' -n '' ']'
17:07:42 + '[' -n /bin/bash -o -n '' ']'
17:07:42 + hash -r
17:07:42 + '[' -n '' ']'
17:07:42 + unset VIRTUAL_ENV
17:07:42 + '[' '!' '' = nondestructive ']'
17:07:42 + unset -f deactivate
17:07:42 + rm -rf /home/omero/workspace/OMERO-server/.venv3
17:07:43 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
17:07:47 + '[' false = true ']'
17:07:47 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
17:07:47 Skipping PURGE_DATA:CleanDbAndRepo
17:07:47 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
17:07:49 Copied 1 artifact from "OMERO-build" build number 341
17:07:49 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 337
17:07:49 Copied 2 artifacts from "OMERO-build-build" build number 350
17:07:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15977091778152216041.sh
17:07:49 + source /home/settings.env
17:07:49 ++ OMERO_DB_HOST=pg
17:07:49 ++ OMERO_DB_USER=postgres
17:07:49 ++ OMERO_DB_PASS=
17:07:49 ++ OMERO_ROOT_PASS=omero
17:07:49 ++ OMERO_DATA_DIR=/OMERO
17:07:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
17:07:49 + OMERO_DB_NAME=OMERO-server
17:07:49 + OMERO_DATA_DIR=/home/omero/omero-server-data
17:07:49 + mkdir -p /home/omero/omero-server-data
17:07:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
17:07:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
17:07:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
17:07:49 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
17:07:49 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
17:07:49 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
17:07:49 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
17:07:49 ++ ls OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
17:07:49 + ZIP=OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
17:07:49 + '[' '!' -z '' ']'
17:07:49 + DIST=OMERO.server-5.6.3-543-f11ef0093a-ice36
17:07:49 + unzip OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
17:07:49 Archive: OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/blitz/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/grid/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/profiles/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/error/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/grid/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/janelia/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/matplotlib/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/ncsa_paledit/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/seaborn/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/luts/wcif/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/analysis_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/annotation_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/export_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/figure_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/import_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/scripts/omero/util_scripts/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/misc/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__1/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__10/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__11/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__2/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__3/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__4/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__5/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__6/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__7/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__8/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__9/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__4/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__5/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__6/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__7/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.1__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.2__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.2__0/t/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.3__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.4__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.0__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.1__1/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.2__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__1/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__2/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__3/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/
17:07:49 creating: OMERO.server-5.6.3-543-f11ef0093a-ice36/var/
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/LICENSE.txt
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/backup.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/blitz/mail-senders.example
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/blitz/mail-server.example
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/build.properties
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/env.bat
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/env.sh
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/hibernate.properties
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/ice.config
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/logback-cli.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/logback-indexing-cli.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/logback-indexing.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/logback.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/mime.types
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/node1.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/node2.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/omero.properties
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/profiles/psql
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/rollover.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/Windows.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/error/maintainance.html
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/grid/README
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/grid/default.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/grid/templates.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/grid/windefault.xml
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/ice.config
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/internal.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/master.cfg
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/templates/robot.template
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/etc/testdropbox.config
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/history.rst
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/OMEZarrReader.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/activation.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aggdesigner-algorithm.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aircompressor.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/annotations.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/antlr.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aopalliance.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/avatica-core.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/avatica-metrics.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aws-java-sdk-core.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aws-java-sdk-kms.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/aws-java-sdk-s3.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/base.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-all.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-anim.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-awt-util.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-bridge.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-codec.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-constants.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-css.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-dom.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-ext.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-extension.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-gui-util.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-gvt.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-i18n.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-parser.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-rasterizer-ext.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-rasterizer.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-script.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-slideshow.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-squiggle-ext.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-squiggle.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-svg-dom.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-svgbrowser.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-svggen.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-svgpp.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-svgrasterizer.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-swing.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-transcoder.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-ttf2svg.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-util.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/batik-xml.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/btm.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/bufr.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/c3p0.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/calcite-core.jar
17:07:49 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/client/calcite-linq4j.jar
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17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/minio.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/minlog.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/native-lib-loader.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/objenesis.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/okhttp.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/okio.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-codecs.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-common.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-jai.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-mdbtools.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-poi.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/ome-xml.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-blitz.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-common.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-gateway.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-model.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-renderer.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-romio.jar
17:07:51 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/omero-server.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/pdfbox.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/perf4j.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/postgresql.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/protobuf-java.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/quartz.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/re2j.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/reflectasm.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/rhino.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/serializer.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/sketches-core.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/slf4j-api.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/snakeyaml.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/solr-analysis-extras.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/solr-commons-csv.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/solr-core.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/solr-solrj.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/specification.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-aop.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-beans.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-context-support.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-context.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-core.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-expression.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-jdbc.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-jms.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-ldap-core.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-messaging.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-orm.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-security-core.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-security-ldap.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/spring-tx.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/sqlite-jdbc.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/subethasmtp.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/turbojpeg.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/udunits.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xalan.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xercesImpl.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xml-apis-ext.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xml-apis.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xmlgraphics-commons.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xmpcore.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/lib/server/xpp3.jar
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/README
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/agpl.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/antlr.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/apache-v1.1.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/apache-v2.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/asm.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/bouncy_castle_license.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/bsd.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/cddl-v1.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/cpl-v10.html
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/crystalclear.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/django.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/dom4j.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/epl-v1.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/fbsd.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/freemarker.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/gpl-v2.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/gpl.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/gtest.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/iconsweets_license.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/jamon.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/jmock.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/jquery.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/jtidy.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/lgpl-3.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/lgpl-v2.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/lgpl-v2.1.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/lgpl-v3.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/lgpl.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/matplotlib.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/mit.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/mpl-v1_0.htm
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/npl-1_1.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/path.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/pil.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/postgresql.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/psf-v2.0.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/psf-v2.5.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/scons.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/slf4j.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/tablelayout.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/which.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/zlib-libpng.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/share/licenses/zpl-v2.1.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/README.txt
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/misc/Makefile
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/misc/current.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/misc/enums.py
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/psql-header.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/schema.sql
17:07:52 inflating: OMERO.server-5.6.3-543-f11ef0093a-ice36/sql/psql/OMERO5.4__0/views.sql
17:07:52 + rm -f OMERO.server-5.6.3-543-f11ef0093a-ice36.zip
17:07:52 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-543-f11ef0093a-ice36 /home/omero/workspace/OMERO-server/OMERO.server
17:07:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
17:07:52 ++ deactivate nondestructive
17:07:52 ++ '[' -n '' ']'
17:07:52 ++ '[' -n '' ']'
17:07:52 ++ '[' -n /bin/bash -o -n '' ']'
17:07:52 ++ hash -r
17:07:52 ++ '[' -n '' ']'
17:07:52 ++ unset VIRTUAL_ENV
17:07:52 ++ '[' '!' nondestructive = nondestructive ']'
17:07:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
17:07:52 ++ export VIRTUAL_ENV
17:07:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:07:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:07:52 ++ export PATH
17:07:52 ++ '[' -n '' ']'
17:07:52 ++ '[' -z '' ']'
17:07:52 ++ _OLD_VIRTUAL_PS1=
17:07:52 ++ PS1='(.venv3) '
17:07:52 ++ export PS1
17:07:52 ++ '[' -n /bin/bash -o -n '' ']'
17:07:52 ++ hash -r
17:07:52 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
17:07:52 Collecting zeroc-ice==3.6.5
17:07:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
17:07:54 Installing collected packages: zeroc-ice
17:07:55 Successfully installed zeroc-ice-3.6.5
17:07:55 + pip install -U pip future
17:07:55 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
17:07:56 Collecting pip
17:07:56 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
17:07:56 Collecting future
17:07:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
17:07:56 Installing collected packages: pip, future
17:07:56 Attempting uninstall: pip
17:07:56 Found existing installation: pip 21.2.3
17:07:56 Uninstalling pip-21.2.3:
17:07:56 Successfully uninstalled pip-21.2.3
17:07:57 Successfully installed future-1.0.0 pip-25.0.1
17:07:57 + pip install markdown
17:07:58 Collecting markdown
17:07:58 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
17:07:58 Collecting importlib-metadata>=4.4 (from markdown)
17:07:58 Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB)
17:07:58 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
17:07:58 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
17:07:58 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
17:07:58 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB)
17:07:58 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
17:07:58 Installing collected packages: zipp, importlib-metadata, markdown
17:07:58 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0
17:07:58 + pip install reportlab
17:07:59 Collecting reportlab
17:07:59 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB)
17:08:00 Collecting pillow>=9.0.0 (from reportlab)
17:08:00 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
17:08:00 Collecting chardet (from reportlab)
17:08:00 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
17:08:00 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB)
17:08:00 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
17:08:00 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
17:08:00 Installing collected packages: pillow, chardet, reportlab
17:08:01 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1
17:08:01 + pip install omego
17:08:02 Collecting omego
17:08:02 Using cached omego-0.7.0-py3-none-any.whl
17:08:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
17:08:02 Collecting yaclifw>=0.1.1 (from omego)
17:08:02 Using cached yaclifw-0.2.0-py3-none-any.whl
17:08:02 Collecting six (from yaclifw>=0.1.1->omego)
17:08:02 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
17:08:02 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
17:08:02 Installing collected packages: six, yaclifw, omego
17:08:02 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
17:08:02 + pip install tables
17:08:03 Collecting tables
17:08:03 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
17:08:03 Collecting numpy>=1.19.0 (from tables)
17:08:03 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
17:08:03 Collecting numexpr>=2.6.2 (from tables)
17:08:03 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
17:08:03 Collecting packaging (from tables)
17:08:03 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
17:08:04 Collecting py-cpuinfo (from tables)
17:08:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
17:08:04 Collecting blosc2>=2.3.0 (from tables)
17:08:04 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
17:08:04 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
17:08:04 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
17:08:04 Collecting msgpack (from blosc2>=2.3.0->tables)
17:08:04 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
17:08:04 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
17:08:04 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
17:08:04 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
17:08:04 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
17:08:04 Using cached packaging-24.2-py3-none-any.whl (65 kB)
17:08:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
17:08:04 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
17:08:05 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
17:08:05 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
17:08:08 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
17:08:08 + pip install jinja2
17:08:09 Collecting jinja2
17:08:09 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
17:08:09 Collecting MarkupSafe>=2.0 (from jinja2)
17:08:09 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
17:08:09 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
17:08:09 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
17:08:09 Installing collected packages: MarkupSafe, jinja2
17:08:09 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
17:08:09 + pip install omero-py
17:08:10 Collecting omero-py
17:08:10 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB)
17:08:10 Collecting urllib3<2 (from omero-py)
17:08:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
17:08:10 Collecting appdirs (from omero-py)
17:08:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
17:08:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
17:08:10 Collecting numpy<2 (from omero-py)
17:08:10 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
17:08:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0)
17:08:10 Collecting PyYAML (from omero-py)
17:08:10 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
17:08:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
17:08:10 Collecting requests (from omero-py)
17:08:10 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
17:08:10 Collecting portalocker (from omero-py)
17:08:11 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
17:08:11 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
17:08:11 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
17:08:11 Collecting idna<4,>=2.5 (from requests->omero-py)
17:08:11 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
17:08:11 Collecting certifi>=2017.4.17 (from requests->omero-py)
17:08:11 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
17:08:11 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB)
17:08:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
17:08:12 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
17:08:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
17:08:12 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
17:08:12 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
17:08:12 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
17:08:12 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
17:08:12 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
17:08:12 Using cached idna-3.10-py3-none-any.whl (70 kB)
17:08:12 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
17:08:13 Attempting uninstall: numpy
17:08:13 Found existing installation: numpy 2.0.2
17:08:13 Uninstalling numpy-2.0.2:
17:08:13 Successfully uninstalled numpy-2.0.2
17:08:17 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
17:08:17 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
17:08:17 Collecting omero-metadata
17:08:17 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ra8aycv7/omero-metadata_d966dbe1126a4ea7a97f5fbb8d0b887d
17:08:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ra8aycv7/omero-metadata_d966dbe1126a4ea7a97f5fbb8d0b887d
17:08:18 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2aa847c2513b0b11af1cc2725447e6af646b5977
17:08:18 Installing build dependencies: started
17:08:20 Installing build dependencies: finished with status 'done'
17:08:20 Getting requirements to build wheel: started
17:08:21 Getting requirements to build wheel: finished with status 'done'
17:08:21 Preparing metadata (pyproject.toml): started
17:08:21 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6)
17:08:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
17:08:21 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.6)
17:08:21 Collecting pandas (from omero-metadata)
17:08:21 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
17:08:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
17:08:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
17:08:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
17:08:21 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
17:08:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
17:08:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
17:08:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
17:08:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
17:08:21 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
17:08:21 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
17:08:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
17:08:21 Collecting pytz>=2020.1 (from pandas->omero-metadata)
17:08:21 Using cached pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB)
17:08:21 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
17:08:21 Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
17:08:21 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
17:08:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
17:08:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
17:08:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
17:08:21 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
17:08:22 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
17:08:22 Using cached pytz-2025.1-py2.py3-none-any.whl (507 kB)
17:08:22 Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
17:08:22 Building wheels for collected packages: omero-metadata
17:08:22 Building wheel for omero-metadata (pyproject.toml): started
17:08:23 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
17:08:23 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39249 sha256=60dbd9a51b0d25c3a74f09b048856fbbf4bde72361928a5630990c77ad1e0387
17:08:23 Stored in directory: /tmp/pip-ephem-wheel-cache-17mny76f/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
17:08:23 Successfully built omero-metadata
17:08:24 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
17:08:29 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.1 tzdata-2025.1
17:08:29 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
17:08:29 Collecting omero-cli-render
17:08:29 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-oootguqv/omero-cli-render_182f03bc54fd4ac89783d1aebd9f95f9
17:08:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-oootguqv/omero-cli-render_182f03bc54fd4ac89783d1aebd9f95f9
17:08:30 Running command git checkout -b merge_ci --track origin/merge_ci
17:08:30 Switched to a new branch 'merge_ci'
17:08:30 branch 'merge_ci' set up to track 'origin/merge_ci'.
17:08:30 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 726fda0a2355c126baa082cb333387795a652bfb
17:08:30 Installing build dependencies: started
17:08:32 Installing build dependencies: finished with status 'done'
17:08:32 Getting requirements to build wheel: started
17:08:32 Getting requirements to build wheel: finished with status 'done'
17:08:32 Preparing metadata (pyproject.toml): started
17:08:32 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:32 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
17:08:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6)
17:08:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
17:08:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
17:08:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
17:08:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
17:08:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
17:08:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
17:08:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
17:08:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
17:08:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
17:08:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
17:08:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
17:08:32 Building wheels for collected packages: omero-cli-render
17:08:32 Building wheel for omero-cli-render (pyproject.toml): started
17:08:33 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
17:08:33 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19566 sha256=ae70408e54102d2974ac328e0a6927f740f5a4c195d57131bf55b707085edf2f
17:08:33 Stored in directory: /tmp/pip-ephem-wheel-cache-itg5mh4q/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
17:08:33 Successfully built omero-cli-render
17:08:33 Installing collected packages: omero-cli-render
17:08:33 Successfully installed omero-cli-render-0.8.2.dev0
17:08:33 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
17:08:33 Collecting omero-cli-duplicate
17:08:33 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_zhb79r2/omero-cli-duplicate_a0635f818cd4443d9a40dad9f65f37ee
17:08:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_zhb79r2/omero-cli-duplicate_a0635f818cd4443d9a40dad9f65f37ee
17:08:34 Running command git checkout -b merge_ci --track origin/merge_ci
17:08:34 Switched to a new branch 'merge_ci'
17:08:34 branch 'merge_ci' set up to track 'origin/merge_ci'.
17:08:34 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e5330c772c67c6563f8ee5cf5dcf0a163505acde
17:08:34 Installing build dependencies: started
17:08:36 Installing build dependencies: finished with status 'done'
17:08:36 Getting requirements to build wheel: started
17:08:36 Getting requirements to build wheel: finished with status 'done'
17:08:36 Preparing metadata (pyproject.toml): started
17:08:36 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:36 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6)
17:08:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
17:08:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
17:08:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
17:08:36 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
17:08:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
17:08:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
17:08:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
17:08:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
17:08:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
17:08:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
17:08:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
17:08:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
17:08:36 Building wheels for collected packages: omero-cli-duplicate
17:08:36 Building wheel for omero-cli-duplicate (pyproject.toml): started
17:08:37 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
17:08:37 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11508 sha256=a0fa134c47822deca32d5fb670a71e15ce56945022e71e7289a238cd814f6519
17:08:37 Stored in directory: /tmp/pip-ephem-wheel-cache-hgcdvod0/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
17:08:37 Successfully built omero-cli-duplicate
17:08:37 Installing collected packages: omero-cli-duplicate
17:08:37 Successfully installed omero-cli-duplicate-0.4.1.dev0
17:08:37 + pip install omero-certificates
17:08:37 Collecting omero-certificates
17:08:37 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
17:08:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6)
17:08:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
17:08:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
17:08:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
17:08:37 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
17:08:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
17:08:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
17:08:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
17:08:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
17:08:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
17:08:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
17:08:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
17:08:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
17:08:37 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
17:08:38 Installing collected packages: omero-certificates
17:08:38 Successfully installed omero-certificates-0.4.0
17:08:38 + for x in *.tar.gz
17:08:38 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
17:08:38 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
17:08:38 Installing build dependencies: started
17:08:40 Installing build dependencies: finished with status 'done'
17:08:40 Getting requirements to build wheel: started
17:08:40 Getting requirements to build wheel: finished with status 'done'
17:08:40 Preparing metadata (pyproject.toml): started
17:08:40 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:40 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6)
17:08:40 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
17:08:40 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
17:08:40 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
17:08:40 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
17:08:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
17:08:40 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
17:08:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
17:08:40 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
17:08:40 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
17:08:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
17:08:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
17:08:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
17:08:40 Building wheels for collected packages: omero-dropbox
17:08:40 Building wheel for omero-dropbox (pyproject.toml): started
17:08:40 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
17:08:40 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49106 sha256=2f14fcfd143dcef577e814871fd3d96f3e8e740891ba57bf4579dacf3bd0cdd5
17:08:40 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
17:08:40 Successfully built omero-dropbox
17:08:40 Installing collected packages: omero-dropbox
17:08:41 Successfully installed omero-dropbox-5.7.1.dev0
17:08:41 + for x in *.tar.gz
17:08:41 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
17:08:41 Processing ./omero_marshal-0.9.1.dev0.tar.gz
17:08:41 Installing build dependencies: started
17:08:43 Installing build dependencies: finished with status 'done'
17:08:43 Getting requirements to build wheel: started
17:08:43 Getting requirements to build wheel: finished with status 'done'
17:08:43 Preparing metadata (pyproject.toml): started
17:08:43 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:43 Building wheels for collected packages: omero_marshal
17:08:43 Building wheel for omero_marshal (pyproject.toml): started
17:08:43 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
17:08:43 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88094 sha256=a6f5f478f50d18f8551d04553e0a88dddd778923c9b9abca15f9bc0ecddc9cc4
17:08:43 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
17:08:43 Successfully built omero_marshal
17:08:44 Installing collected packages: omero_marshal
17:08:44 Successfully installed omero_marshal-0.9.1.dev0
17:08:44 + for x in *.tar.gz
17:08:44 + pip install -U omero_py-5.19.7.dev0.tar.gz
17:08:44 Processing ./omero_py-5.19.7.dev0.tar.gz
17:08:45 Installing build dependencies: started
17:08:47 Installing build dependencies: finished with status 'done'
17:08:47 Getting requirements to build wheel: started
17:08:47 Getting requirements to build wheel: finished with status 'done'
17:08:47 Preparing metadata (pyproject.toml): started
17:08:47 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20)
17:08:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4)
17:08:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0)
17:08:47 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4)
17:08:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0)
17:08:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2)
17:08:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5)
17:08:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3)
17:08:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1)
17:08:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1)
17:08:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10)
17:08:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2025.1.31)
17:08:47 Building wheels for collected packages: omero-py
17:08:47 Building wheel for omero-py (pyproject.toml): started
17:08:49 Building wheel for omero-py (pyproject.toml): finished with status 'done'
17:08:49 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783368 sha256=c2278f47cfe40dc078eebf7245240b67ec07813684390495384babff24a0244e
17:08:49 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b
17:08:49 Successfully built omero-py
17:08:49 Installing collected packages: omero-py
17:08:49 Attempting uninstall: omero-py
17:08:49 Found existing installation: omero-py 5.19.6
17:08:49 Uninstalling omero-py-5.19.6:
17:08:49 Successfully uninstalled omero-py-5.19.6
17:08:51 Successfully installed omero-py-5.19.7.dev0
17:08:51 + for x in *.tar.gz
17:08:51 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
17:08:52 Processing ./omero_scripts-5.9.1.dev0.tar.gz
17:08:52 Installing build dependencies: started
17:08:54 Installing build dependencies: finished with status 'done'
17:08:54 Getting requirements to build wheel: started
17:08:54 Getting requirements to build wheel: finished with status 'done'
17:08:54 Preparing metadata (pyproject.toml): started
17:08:54 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:54 Building wheels for collected packages: omero-scripts
17:08:54 Building wheel for omero-scripts (pyproject.toml): started
17:08:54 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
17:08:54 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136850 sha256=ac485d47036eff42d0265f78a98567323705b061b5959e5599721fb86a739124
17:08:54 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
17:08:54 Successfully built omero-scripts
17:08:54 Installing collected packages: omero-scripts
17:08:54 Successfully installed omero-scripts-5.9.1.dev0
17:08:55 + for x in *.tar.gz
17:08:55 + pip install -U omero_web-5.29.1.dev0.tar.gz
17:08:55 Processing ./omero_web-5.29.1.dev0.tar.gz
17:08:55 Installing build dependencies: started
17:08:57 Installing build dependencies: finished with status 'done'
17:08:57 Getting requirements to build wheel: started
17:08:57 Getting requirements to build wheel: finished with status 'done'
17:08:57 Preparing metadata (pyproject.toml): started
17:08:58 Preparing metadata (pyproject.toml): finished with status 'done'
17:08:58 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (5.19.7.dev0)
17:08:58 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
17:08:58 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
17:08:58 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
17:08:58 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
17:08:58 Collecting django-pipeline (from omero-web==5.29.1.dev0)
17:08:58 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
17:08:58 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
17:08:58 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
17:08:58 Collecting django-csp (from omero-web==5.29.1.dev0)
17:08:58 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
17:08:58 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
17:08:58 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
17:08:58 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
17:08:58 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
17:08:58 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
17:08:58 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
17:08:58 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (2025.1)
17:08:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
17:08:58 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (24.2)
17:08:58 Collecting importlib-resources (from omero-web==5.29.1.dev0)
17:08:58 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
17:08:58 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
17:08:58 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
17:08:58 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
17:08:58 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
17:08:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
17:08:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
17:08:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
17:08:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
17:08:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
17:08:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
17:08:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
17:08:59 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (53.0.0)
17:08:59 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
17:08:59 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
17:08:59 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.29.1.dev0) (3.21.0)
17:08:59 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
17:08:59 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
17:08:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
17:08:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
17:08:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
17:08:59 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
17:08:59 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
17:08:59 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
17:08:59 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
17:08:59 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
17:08:59 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
17:08:59 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
17:08:59 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
17:08:59 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
17:08:59 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
17:08:59 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
17:08:59 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
17:08:59 Building wheels for collected packages: omero-web
17:08:59 Building wheel for omero-web (pyproject.toml): started
17:09:00 Building wheel for omero-web (pyproject.toml): finished with status 'done'
17:09:01 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817454 sha256=7d7e99a276208d6426ce98ddc515250a4d167b88e0ad49bcfb1b960297eb7d06
17:09:01 Stored in directory: /home/omero/.cache/pip/wheels/20/6a/be/a0eb92c362960a201e1b2f293382a92507134b48bed64ccadd
17:09:01 Successfully built omero-web
17:09:01 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
17:09:04 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.9.0
17:09:04 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
17:09:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
17:09:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
17:09:04 --2025-03-09 17:09:04-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
17:09:05 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ...
17:09:05 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
17:09:05 HTTP request sent, awaiting response... 200 OK
17:09:05 Length: 115529 (113K) [text/plain]
17:09:05 Saving to: ‘Figure_To_Pdf.py’
17:09:05
17:09:05 0K .......... .......... .......... .......... .......... 44% 3.46M 0s
17:09:05 50K .......... .......... .......... .......... .......... 88% 4.87M 0s
17:09:05 100K .......... .. 100% 127M=0.02s
17:09:05
17:09:05 2025-03-09 17:09:05 (4.55 MB/s) - ‘Figure_To_Pdf.py’ saved [115529/115529]
17:09:05
17:09:05 + chmod 755 Figure_To_Pdf.py
17:09:05 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
17:09:05 + omero config set omero.db.name OMERO-server
17:09:06 + omero config set omero.db.host pg
17:09:08 + omero config set omero.db.user postgres
17:09:09 + omero config set omero.data.dir /home/omero/omero-server-data
17:09:10 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
17:09:11 + omero config set omero.db.poolsize 25
17:09:13 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
17:09:14 + omero config set omero.security.trustStorePassword changeit
17:09:15 + omero config set omero.mail.config true
17:09:17 + omero config set omero.mail.from qa@openmicroscopy.org.uk
17:09:20 + omero config set omero.mail.host smtp.dundee.ac.uk
17:09:21 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
17:09:22 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
17:09:23 + omero certificates
17:09:25 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
17:09:25 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
17:09:25 + '[' false = true ']'
17:09:25 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
17:09:25 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
17:09:25 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
17:09:25 2025-03-09 17:09:25,735 [ omego.db] DEBUG dbcommand => upgrade
17:09:25 2025-03-09 17:09:25,735 [ omego.db] DEBUG dbhost => localhost
17:09:25 2025-03-09 17:09:25,735 [ omego.db] DEBUG dbname => OMERO-server
17:09:25 2025-03-09 17:09:25,735 [ omego.db] DEBUG dbpass => omero
17:09:25 2025-03-09 17:09:25,736 [ omego.db] DEBUG dbuser => omero
17:09:25 2025-03-09 17:09:25,736 [ omego.db] DEBUG rootpass => omero
17:09:25 2025-03-09 17:09:25,736 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
17:09:25 2025-03-09 17:09:25,736 [omego.extern] INFO Executing : omero version
17:09:26 OMERO.py version:
17:09:26 OMERO.server version:
17:09:26 5.6.3-543-f11ef0093a-ice36
17:09:26 5.19.7.dev0
17:09:27 2025-03-09 17:09:27,126 [omego.extern] INFO Completed [1.390 s]
17:09:27 2025-03-09 17:09:27,126 [omego.extern] DEBUG Using omero CLI from omero
17:09:27 2025-03-09 17:09:27,126 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
17:09:27 2025-03-09 17:09:27,126 [omego.extern] INFO Running [current environment]: omero config get --show-password
17:09:27 2025-03-09 17:09:27,126 [omego.extern] INFO Executing : omero config get --show-password
17:09:28 2025-03-09 17:09:28,448 [omego.extern] INFO Completed [1.322 s]
17:09:28 2025-03-09 17:09:28,448 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
17:09:28 2025-03-09 17:09:28,449 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
17:09:28 2025-03-09 17:09:28,655 [omego.extern] INFO Completed [0.206 s]
17:09:28 2025-03-09 17:09:28,655 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
17:09:28 2025-03-09 17:09:28,655 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
17:09:28
17:09:28 2025-03-09 17:09:28,655 [omego.extern] INFO Running [current environment]: omero config get --show-password
17:09:28 2025-03-09 17:09:28,655 [omego.extern] INFO Executing : omero config get --show-password
17:09:29 2025-03-09 17:09:29,990 [omego.extern] INFO Completed [1.335 s]
17:09:29 2025-03-09 17:09:29,990 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
17:09:29 2025-03-09 17:09:29,991 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
17:09:30 2025-03-09 17:09:30,174 [omego.extern] INFO Completed [0.184 s]
17:09:30 2025-03-09 17:09:30,175 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n'
17:09:30 2025-03-09 17:09:30,175 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
17:09:30 2025-03-09 17:09:30,175 [omego.extern] INFO Running [current environment]: omero config get --show-password
17:09:30 2025-03-09 17:09:30,175 [omego.extern] INFO Executing : omero config get --show-password
17:09:31 2025-03-09 17:09:31,501 [omego.extern] INFO Completed [1.326 s]
17:09:31 2025-03-09 17:09:31,501 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
17:09:31 2025-03-09 17:09:31,501 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
17:09:31 2025-03-09 17:09:31,681 [omego.extern] INFO Completed [0.180 s]
17:09:31 2025-03-09 17:09:31,681 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
17:09:31 2025-03-09 17:09:31,682 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
17:09:31 2025-03-09 17:09:31,684 [ omego.db] INFO Database is already at OMERO5.4__0
17:09:31 + export LANG=en_US.UTF-8
17:09:31 + LANG=en_US.UTF-8
17:09:31 + export LANGUAGE=en_US:en
17:09:31 + LANGUAGE=en_US:en
17:09:31 + export LC_ALL=en_US.UTF-8
17:09:31 + LC_ALL=en_US.UTF-8
17:09:31 + BUILD_ID=DONT_KILL_ME
17:09:31 + omero admin start
17:09:41 No descriptor given. Using etc/grid/default.xml
17:09:52 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
17:09:52 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
17:09:52 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
17:09:52 Waiting on startup. Use CTRL-C to exit
17:09:52 + omero admin waitup
17:09:53 Waiting on startup. Use CTRL-C to exit
17:09:53 + omero admin diagnostics
17:09:55
17:09:55 ================================================================================
17:09:55 OMERO Diagnostics (admin)
17:09:55 ================================================================================
17:09:55
17:09:55 Commands: java -version 11.0.24 (/usr/bin/java)
17:09:55 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
17:09:55 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
17:09:55 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
17:09:55 Commands: psql --version 16.4 (/usr/bin/psql)
17:09:55 Commands: openssl version 3.0.71 (/usr/bin/openssl)
17:09:55
17:09:55 Component: OMERO.py 5.19.7.dev0
17:09:55 Component: OMERO.server 5.6.3-543-f11ef0093a-ice36
17:09:55
17:09:55 Server: icegridnode running
17:09:56 Server: Blitz-0 active (pid = 44353, enabled)
17:09:56 Server: Indexer-0 activating (enabled)
17:09:56 Server: OMERO.Glacier2 active (pid = 44381, enabled)
17:09:56 Server: OMERO.IceStorm active (pid = 44409, enabled)
17:09:56 Server: Processor-0 activating (enabled)
17:09:56 Server: Tables-0 activating (enabled)
17:09:56
17:09:56 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
17:09:56 Log files: Blitz-0.log 23.8 KB errors=0 warnings=1
17:09:56 Log files: DropBox.log n/a
17:09:56 Log files: FileServer.log n/a
17:09:56 Log files: Indexer-0.log 478 B
17:09:56 Log files: MonitorServer.log n/a
17:09:56 Log files: Processor-0.log 592 B
17:09:56 Log files: Tables-0.log 841 B
17:09:56 Log files: TestDropBox.log n/a
17:09:56 Log files: master.err 24.9 KB
17:09:56 Log files: master.out 30.5 KB
17:09:56 Log files: Total size 0.08 MB
17:09:56
17:09:56
17:09:56 Environment:OMERO_HOME=(unset)
17:09:56 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
17:09:56 Environment:OMERO_NODE=(unset)
17:09:56 Environment:OMERO_MASTER=(unset)
17:09:56 Environment:OMERO_USERDIR=(unset)
17:09:56 Environment:OMERO_TMPDIR=(unset)
17:09:56 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:09:56 Environment:PYTHONPATH=(unset)
17:09:56 Environment:ICE_HOME=/opt/ice-3.6.5
17:09:56 Environment:LD_LIBRARY_PATH=(unset)
17:09:56 Environment:DYLD_LIBRARY_PATH=(unset)
17:09:56
17:09:56 OMERO SSL port:4064
17:09:56 OMERO TCP port:4063
17:09:56 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
17:09:56 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
17:09:56
17:09:56 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
17:09:56 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
17:09:56 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
17:09:56 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
17:09:56
17:09:56 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 9 March 2025 14151472978928e41055f4b94b3689c071df0bfd
17:09:56 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 9 March 2025 14151472978928e41055f4b94b3689c071df0bfd
17:09:56 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 9 March 2025 14151472978928e41055f4b94b3689c071df0bfd
17:09:56 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 9 March 2025 06d6b74fdfa9b525769f281c5a92984a95174f58
17:09:56 Jar: lib/server/omero-blitz.jar jar 5.8.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-common.jar jar 5.7.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-gateway.jar jar 5.10.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-model.jar jar 5.7.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-renderer.jar jar 5.6.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-romio.jar jar 5.8.1-SNAPSHOT
17:09:56 Jar: lib/server/omero-server.jar jar 5.7.1-SNAPSHOT
17:09:56 + deactivate
17:09:56 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
17:09:56 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:09:56 + export PATH
17:09:56 + unset _OLD_VIRTUAL_PATH
17:09:56 + '[' -n '' ']'
17:09:56 + '[' -n /bin/bash -o -n '' ']'
17:09:56 + hash -r
17:09:56 + '[' -n '' ']'
17:09:56 + unset VIRTUAL_ENV
17:09:56 + '[' '!' '' = nondestructive ']'
17:09:56 + unset -f deactivate
17:09:56 Finished: SUCCESS
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