12:39:31 Started by upstream project "Trigger" build number 41
12:39:31 originally caused by:
12:39:31 Started by user devspace
12:39:31 Running as SYSTEM
12:39:32 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
12:39:33 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1826183563273417343.sh
12:39:33 + source /home/settings.env
12:39:33 ++ OMERO_DB_HOST=pg
12:39:33 ++ OMERO_DB_USER=postgres
12:39:33 ++ OMERO_DB_PASS=
12:39:33 ++ OMERO_ROOT_PASS=omero
12:39:33 ++ OMERO_DATA_DIR=/OMERO
12:39:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:39:33 + OMERO_DB_NAME=OMERO-server
12:39:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:39:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:39:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:39:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:39:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
12:39:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:39:33 ++ deactivate nondestructive
12:39:33 ++ '[' -n '' ']'
12:39:33 ++ '[' -n '' ']'
12:39:33 ++ hash -r
12:39:33 ++ '[' -n '' ']'
12:39:33 ++ unset VIRTUAL_ENV
12:39:33 ++ unset VIRTUAL_ENV_PROMPT
12:39:33 ++ '[' '!' nondestructive = nondestructive ']'
12:39:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:39:33 ++ export VIRTUAL_ENV
12:39:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:39:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:39:33 ++ export PATH
12:39:33 ++ '[' -n '' ']'
12:39:33 ++ '[' -z '' ']'
12:39:33 ++ _OLD_VIRTUAL_PS1=
12:39:33 ++ PS1='(.venv3) '
12:39:33 ++ export PS1
12:39:33 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:39:33 ++ export VIRTUAL_ENV_PROMPT
12:39:33 ++ hash -r
12:39:33 + omero admin stop
12:39:55 Server not running
12:39:56 + echo not running
12:39:56 not running
12:39:56 + sleep 5
12:40:01 + deactivate
12:40:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:40:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:40:01 + export PATH
12:40:01 + unset _OLD_VIRTUAL_PATH
12:40:01 + '[' -n '' ']'
12:40:01 + hash -r
12:40:01 + '[' -n '' ']'
12:40:01 + unset VIRTUAL_ENV
12:40:01 + unset VIRTUAL_ENV_PROMPT
12:40:01 + '[' '!' '' = nondestructive ']'
12:40:01 + unset -f deactivate
12:40:01 + rm -rf /home/omero/workspace/OMERO-server/.venv3
12:40:01 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
12:40:06 + '[' false = true ']'
12:40:06 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
12:40:06 Skipping PURGE_DATA:CleanDbAndRepo
12:40:06 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/version.properties
12:40:09 Copied 1 artifact from "OMERO-build" build number 18
12:40:09 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 18
12:40:09 Copied 2 artifacts from "OMERO-build-build" build number 22
12:40:09 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 15
12:40:09 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10042166870154608273.sh
12:40:09 + source /home/settings.env
12:40:09 ++ OMERO_DB_HOST=pg
12:40:09 ++ OMERO_DB_USER=postgres
12:40:09 ++ OMERO_DB_PASS=
12:40:09 ++ OMERO_ROOT_PASS=omero
12:40:09 ++ OMERO_DATA_DIR=/OMERO
12:40:09 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:40:09 + OMERO_DB_NAME=OMERO-server
12:40:09 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:40:09 + mkdir -p /home/omero/omero-server-data
12:40:09 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:40:09 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:40:09 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:40:09 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:40:09 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:40:09 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:40:09 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:40:09 ++ ls OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:40:09 + ZIP=OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:40:09 + '[' '!' -z '' ']'
12:40:09 + DIST=OMERO.server-5.6.3-578-c0aeca986d-ice36-b18
12:40:09 + unzip OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:40:09 Archive: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/blitz/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/grid/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/profiles/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/error/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/grid/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/janelia/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/matplotlib/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/ncsa_paledit/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/seaborn/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/luts/wcif/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/analysis_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/annotation_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/export_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/figure_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/import_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/scripts/omero/util_scripts/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/server/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/share/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/share/licenses/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/misc/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__1/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__10/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__11/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__2/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__3/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__4/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__5/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__6/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__7/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__8/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__9/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__4/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__5/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__6/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__7/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.1__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/t/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.3__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.4__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.0__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__1/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__2/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__3/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/var/
12:40:09 creating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/var/tmp/
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/LICENSE.txt
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/backup.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/blitz/mail-senders.example
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/blitz/mail-server.example
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/build.properties
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/env.bat
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/env.sh
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/hibernate.properties
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/ice.config
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/logback-cli.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/logback-indexing-cli.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/logback-indexing.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/logback.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/mime.types
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/node1.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/node2.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/omero.properties
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/profiles/psql
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/rollover.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/Windows.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/error/maintainance.html
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/grid/README
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/grid/default.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/grid/templates.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/grid/windefault.xml
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/ice.config
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/internal.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/master.cfg
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/templates/robot.template
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/etc/testdropbox.config
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/history.rst
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/OMEZarrReader.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/accessors-smart.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/activation.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aggdesigner-algorithm.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aircompressor.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/antlr.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aopalliance.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/apiguardian-api.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/asm.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/avatica-core.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/avatica-metrics.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aws-java-sdk-core.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aws-java-sdk-kms.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/aws-java-sdk-s3.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/base.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-anim.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-awt-util.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-bridge.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-codec.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-constants.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-css.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-dom.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-ext.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-gvt.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-i18n.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-parser.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-script.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-shared-resources.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-svg-dom.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-svggen.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-transcoder.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-util.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/batik-xml.jar
12:40:09 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/lib/client/btm.jar
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12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/psql-footer.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/psql-header.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/schema.sql
12:40:11 inflating: OMERO.server-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/views.sql
12:40:11 + rm -f OMERO.server-5.6.3-578-c0aeca986d-ice36-b18.zip
12:40:11 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-c0aeca986d-ice36-b18 /home/omero/workspace/OMERO-server/OMERO.server
12:40:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
12:40:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:40:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:40:12 --2026-01-14 12:40:12-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
12:40:12 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
12:40:12 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
12:40:12 HTTP request sent, awaiting response... 200 OK
12:40:12 Length: 889211 (868K) [application/java-archive]
12:40:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
12:40:12
12:40:12 0K .......... .......... .......... .......... .......... 5% 3.52M 0s
12:40:12 50K .......... .......... .......... .......... .......... 11% 7.36M 0s
12:40:12 100K .......... .......... .......... .......... .......... 17% 4.98M 0s
12:40:12 150K .......... .......... .......... .......... .......... 23% 8.91M 0s
12:40:12 200K .......... .......... .......... .......... .......... 28% 13.3M 0s
12:40:12 250K .......... .......... .......... .......... .......... 34% 10.4M 0s
12:40:12 300K .......... .......... .......... .......... .......... 40% 17.7M 0s
12:40:12 350K .......... .......... .......... .......... .......... 46% 17.5M 0s
12:40:12 400K .......... .......... .......... .......... .......... 51% 25.5M 0s
12:40:12 450K .......... .......... .......... .......... .......... 57% 17.3M 0s
12:40:12 500K .......... .......... .......... .......... .......... 63% 13.9M 0s
12:40:12 550K .......... .......... .......... .......... .......... 69% 41.5M 0s
12:40:12 600K .......... .......... .......... .......... .......... 74% 14.3M 0s
12:40:12 650K .......... .......... .......... .......... .......... 80% 13.6M 0s
12:40:12 700K .......... .......... .......... .......... .......... 86% 23.0M 0s
12:40:12 750K .......... .......... .......... .......... .......... 92% 15.2M 0s
12:40:12 800K .......... .......... .......... .......... .......... 97% 10.9M 0s
12:40:12 850K .......... ........ 100% 110M=0.08s
12:40:12
12:40:12 2026-01-14 12:40:12 (11.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
12:40:12
12:40:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
12:40:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:40:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:40:12 --2026-01-14 12:40:12-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
12:40:13 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
12:40:13 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
12:40:13 HTTP request sent, awaiting response... 200 OK
12:40:13 Length: 73309 (72K) [application/java-archive]
12:40:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
12:40:13
12:40:13 0K .......... .......... .......... .......... .......... 69% 31.6M 0s
12:40:13 50K .......... .......... . 100% 1.72M=0.01s
12:40:13
12:40:13 2026-01-14 12:40:13 (5.07 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
12:40:13
12:40:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
12:40:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:40:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:40:13 --2026-01-14 12:40:13-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
12:40:13 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
12:40:13 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
12:40:13 HTTP request sent, awaiting response... 200 OK
12:40:13 Length: 63303 (62K) [application/java-archive]
12:40:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
12:40:13
12:40:13 0K .......... .......... .......... .......... .......... 80% 3.49M 0s
12:40:13 50K .......... . 100% 11.2M=0.02s
12:40:13
12:40:13 2026-01-14 12:40:13 (4.02 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
12:40:13
12:40:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
12:40:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:40:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:40:13 --2026-01-14 12:40:13-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
12:40:13 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
12:40:13 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
12:40:13 HTTP request sent, awaiting response... 200 OK
12:40:13 Length: 1271272 (1.2M) [application/java-archive]
12:40:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
12:40:13
12:40:13 0K .......... .......... .......... .......... .......... 4% 3.35M 0s
12:40:13 50K .......... .......... .......... .......... .......... 8% 7.43M 0s
12:40:13 100K .......... .......... .......... .......... .......... 12% 5.10M 0s
12:40:13 150K .......... .......... .......... .......... .......... 16% 10.3M 0s
12:40:13 200K .......... .......... .......... .......... .......... 20% 10.8M 0s
12:40:13 250K .......... .......... .......... .......... .......... 24% 11.7M 0s
12:40:13 300K .......... .......... .......... .......... .......... 28% 17.9M 0s
12:40:13 350K .......... .......... .......... .......... .......... 32% 19.3M 0s
12:40:13 400K .......... .......... .......... .......... .......... 36% 17.1M 0s
12:40:13 450K .......... .......... .......... .......... .......... 40% 25.6M 0s
12:40:13 500K .......... .......... .......... .......... .......... 44% 13.1M 0s
12:40:13 550K .......... .......... .......... .......... .......... 48% 14.2M 0s
12:40:13 600K .......... .......... .......... .......... .......... 52% 26.2M 0s
12:40:13 650K .......... .......... .......... .......... .......... 56% 12.9M 0s
12:40:13 700K .......... .......... .......... .......... .......... 60% 27.6M 0s
12:40:13 750K .......... .......... .......... .......... .......... 64% 16.6M 0s
12:40:13 800K .......... .......... .......... .......... .......... 68% 14.4M 0s
12:40:13 850K .......... .......... .......... .......... .......... 72% 25.6M 0s
12:40:13 900K .......... .......... .......... .......... .......... 76% 13.0M 0s
12:40:13 950K .......... .......... .......... .......... .......... 80% 28.0M 0s
12:40:13 1000K .......... .......... .......... .......... .......... 84% 18.0M 0s
12:40:13 1050K .......... .......... .......... .......... .......... 88% 13.4M 0s
12:40:13 1100K .......... .......... .......... .......... .......... 92% 28.9M 0s
12:40:13 1150K .......... .......... .......... .......... .......... 96% 12.1M 0s
12:40:13 1200K .......... .......... .......... .......... . 100% 87.5M=0.1s
12:40:13
12:40:13 2026-01-14 12:40:13 (12.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
12:40:13
12:40:13 + for x in *.jar
12:40:13 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
12:40:13 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:40:13 ++ deactivate nondestructive
12:40:13 ++ '[' -n '' ']'
12:40:13 ++ '[' -n '' ']'
12:40:13 ++ hash -r
12:40:13 ++ '[' -n '' ']'
12:40:13 ++ unset VIRTUAL_ENV
12:40:13 ++ unset VIRTUAL_ENV_PROMPT
12:40:13 ++ '[' '!' nondestructive = nondestructive ']'
12:40:13 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:40:13 ++ export VIRTUAL_ENV
12:40:13 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:40:13 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:40:13 ++ export PATH
12:40:13 ++ '[' -n '' ']'
12:40:13 ++ '[' -z '' ']'
12:40:13 ++ _OLD_VIRTUAL_PS1=
12:40:13 ++ PS1='(.venv3) '
12:40:13 ++ export PS1
12:40:13 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:40:13 ++ export VIRTUAL_ENV_PROMPT
12:40:13 ++ hash -r
12:40:13 + pip install -U pip
12:40:14 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:40:14 Collecting pip
12:40:14 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
12:40:14 Installing collected packages: pip
12:40:14 Attempting uninstall: pip
12:40:14 Found existing installation: pip 22.3.1
12:40:14 Uninstalling pip-22.3.1:
12:40:14 Successfully uninstalled pip-22.3.1
12:40:16 Successfully installed pip-25.3
12:40:16 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:40:16 Collecting zeroc-ice==3.6.5
12:40:17 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:40:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.5 MB/s 0:00:01
12:40:18 Installing collected packages: zeroc-ice
12:40:19 Successfully installed zeroc-ice-3.6.5
12:40:19 + pip install markdown
12:40:19 Collecting markdown
12:40:20 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
12:40:20 Using cached markdown-3.10-py3-none-any.whl (107 kB)
12:40:20 Installing collected packages: markdown
12:40:20 Successfully installed markdown-3.10
12:40:20 + pip install reportlab
12:40:21 Collecting reportlab
12:40:21 Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB)
12:40:21 Collecting pillow>=9.0.0 (from reportlab)
12:40:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
12:40:21 Collecting charset-normalizer (from reportlab)
12:40:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
12:40:21 Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB)
12:40:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
12:40:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
12:40:21 Installing collected packages: pillow, charset-normalizer, reportlab
12:40:22
12:40:22 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7
12:40:22 + pip install omego
12:40:23 Collecting omego
12:40:23 Using cached omego-0.7.0-py3-none-any.whl
12:40:23 Collecting future (from omego)
12:40:23 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:40:23 Collecting yaclifw>=0.1.1 (from omego)
12:40:23 Using cached yaclifw-0.2.0-py3-none-any.whl
12:40:23 Collecting six (from yaclifw>=0.1.1->omego)
12:40:23 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:40:23 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:40:23 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:40:23 Installing collected packages: six, future, yaclifw, omego
12:40:24
12:40:24 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
12:40:24 + pip install tables
12:40:24 Collecting tables
12:40:24 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
12:40:24 Collecting numpy>=1.20.0 (from tables)
12:40:24 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
12:40:25 Collecting numexpr>=2.6.2 (from tables)
12:40:25 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:40:25 Collecting packaging (from tables)
12:40:25 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
12:40:25 Collecting py-cpuinfo (from tables)
12:40:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:40:25 Collecting blosc2>=2.3.0 (from tables)
12:40:25 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
12:40:25 Collecting typing-extensions>=4.4.0 (from tables)
12:40:25 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
12:40:25 Collecting ndindex (from blosc2>=2.3.0->tables)
12:40:25 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:40:25 Collecting msgpack (from blosc2>=2.3.0->tables)
12:40:25 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
12:40:25 Collecting platformdirs (from blosc2>=2.3.0->tables)
12:40:25 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
12:40:25 Collecting requests (from blosc2>=2.3.0->tables)
12:40:25 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
12:40:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
12:40:25 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
12:40:25 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
12:40:25 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
12:40:25 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
12:40:25 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
12:40:25 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
12:40:25 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
12:40:26 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
12:40:26 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:40:26 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
12:40:26 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
12:40:26 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
12:40:26 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:40:26 Using cached packaging-25.0-py3-none-any.whl (66 kB)
12:40:26 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
12:40:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:40:26 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
12:40:26 Using cached idna-3.11-py3-none-any.whl (71 kB)
12:40:26 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
12:40:26 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
12:40:26 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
12:40:29
12:40:29 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
12:40:30 + pip install jinja2
12:40:30 Collecting jinja2
12:40:30 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:40:30 Collecting MarkupSafe>=2.0 (from jinja2)
12:40:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:40:30 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:40:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:40:30 Installing collected packages: MarkupSafe, jinja2
12:40:30
12:40:30 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:40:30 + pip install omero-py
12:40:31 Collecting omero-py
12:40:31 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
12:40:31 Collecting appdirs (from omero-py)
12:40:31 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:40:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
12:40:31 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
12:40:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
12:40:31 Collecting PyYAML (from omero-py)
12:40:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:40:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:40:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
12:40:31 Collecting portalocker (from omero-py)
12:40:31 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:40:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
12:40:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
12:40:31 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
12:40:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
12:40:31 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
12:40:31 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:40:31 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:40:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:40:31 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
12:40:33
12:40:33 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
12:40:33 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
12:40:34 Collecting omero-metadata
12:40:34 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-g3k6k1sm/omero-metadata_60e24651e0d3426f954929fff6c19d1e
12:40:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-g3k6k1sm/omero-metadata_60e24651e0d3426f954929fff6c19d1e
12:40:34 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 5aa30a501a1e3548a0f8ca64f93c8cb5d519de03
12:40:34 Installing build dependencies: started
12:40:35 Installing build dependencies: finished with status 'done'
12:40:35 Getting requirements to build wheel: started
12:40:36 Getting requirements to build wheel: finished with status 'done'
12:40:36 Preparing metadata (pyproject.toml): started
12:40:36 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
12:40:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
12:40:36 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
12:40:36 Collecting pandas (from omero-metadata)
12:40:36 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
12:40:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
12:40:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
12:40:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
12:40:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
12:40:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
12:40:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
12:40:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
12:40:36 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
12:40:36 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
12:40:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
12:40:37 Collecting pytz>=2020.1 (from pandas->omero-metadata)
12:40:37 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
12:40:37 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
12:40:37 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
12:40:37 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
12:40:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
12:40:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
12:40:37 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
12:40:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
12:40:37 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
12:40:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
12:40:37 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
12:40:37 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
12:40:37 Building wheels for collected packages: omero-metadata
12:40:37 Building wheel for omero-metadata (pyproject.toml): started
12:40:37 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
12:40:37 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=8bd4beeb67ccada78c35d8f07519d23557d029b5811305fb49bd5a42fb8529a9
12:40:37 Stored in directory: /tmp/pip-ephem-wheel-cache-dpjj4z1d/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
12:40:37 Successfully built omero-metadata
12:40:37 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
12:40:42
12:40:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
12:40:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
12:40:42 Collecting omero-cli-render
12:40:42 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-zi_84664/omero-cli-render_753d6dca9a514ec2a61bc560bb4e93b7
12:40:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-zi_84664/omero-cli-render_753d6dca9a514ec2a61bc560bb4e93b7
12:40:44 Running command git checkout -b merge_ci --track origin/merge_ci
12:40:44 Switched to a new branch 'merge_ci'
12:40:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:40:44 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit cc51a5ac58a460f95a518d56c137cae4449d9eda
12:40:44 Installing build dependencies: started
12:40:45 Installing build dependencies: finished with status 'done'
12:40:45 Getting requirements to build wheel: started
12:40:45 Getting requirements to build wheel: finished with status 'done'
12:40:45 Preparing metadata (pyproject.toml): started
12:40:46 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
12:40:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
12:40:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
12:40:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
12:40:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
12:40:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
12:40:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
12:40:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
12:40:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
12:40:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
12:40:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
12:40:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
12:40:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
12:40:46 Building wheels for collected packages: omero-cli-render
12:40:46 Building wheel for omero-cli-render (pyproject.toml): started
12:40:46 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
12:40:46 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=37b7c7417a4839a37a7a9fd6caabe66095cb80791542262925dce382e79774ca
12:40:46 Stored in directory: /tmp/pip-ephem-wheel-cache-id0etsfi/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
12:40:46 Successfully built omero-cli-render
12:40:46 Installing collected packages: omero-cli-render
12:40:46 Successfully installed omero-cli-render-0.8.2.dev0
12:40:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
12:40:46 Collecting omero-cli-duplicate
12:40:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-jlsmunxk/omero-cli-duplicate_15c24e4abf084074a4e27a570c13b278
12:40:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-jlsmunxk/omero-cli-duplicate_15c24e4abf084074a4e27a570c13b278
12:40:47 Running command git checkout -b merge_ci --track origin/merge_ci
12:40:47 Switched to a new branch 'merge_ci'
12:40:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:40:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 123a74400b1c2ee285bda934bba1e0153f6c0109
12:40:47 Installing build dependencies: started
12:40:48 Installing build dependencies: finished with status 'done'
12:40:48 Getting requirements to build wheel: started
12:40:48 Getting requirements to build wheel: finished with status 'done'
12:40:48 Preparing metadata (pyproject.toml): started
12:40:49 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:49 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
12:40:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
12:40:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
12:40:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
12:40:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
12:40:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
12:40:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
12:40:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
12:40:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
12:40:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
12:40:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
12:40:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
12:40:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
12:40:49 Building wheels for collected packages: omero-cli-duplicate
12:40:49 Building wheel for omero-cli-duplicate (pyproject.toml): started
12:40:49 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
12:40:49 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=0985f561cf7ecc908d3ab3e113561803d16705e399c308368c47c32c542e5bf2
12:40:49 Stored in directory: /tmp/pip-ephem-wheel-cache-72ez9l60/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
12:40:49 Successfully built omero-cli-duplicate
12:40:49 Installing collected packages: omero-cli-duplicate
12:40:49 Successfully installed omero-cli-duplicate-0.4.1.dev0
12:40:49 + pip install omero-certificates
12:40:50 Collecting omero-certificates
12:40:50 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
12:40:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
12:40:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
12:40:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
12:40:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
12:40:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
12:40:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
12:40:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
12:40:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
12:40:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
12:40:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
12:40:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
12:40:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
12:40:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
12:40:50 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
12:40:50 Installing collected packages: omero-certificates
12:40:50 Successfully installed omero-certificates-0.4.0
12:40:50 + for x in *.tar.gz
12:40:50 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
12:40:50 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:40:50 Installing build dependencies: started
12:40:51 Installing build dependencies: finished with status 'done'
12:40:51 Getting requirements to build wheel: started
12:40:51 Getting requirements to build wheel: finished with status 'done'
12:40:51 Preparing metadata (pyproject.toml): started
12:40:51 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
12:40:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
12:40:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
12:40:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
12:40:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
12:40:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
12:40:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:40:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
12:40:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
12:40:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
12:40:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
12:40:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
12:40:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
12:40:51 Building wheels for collected packages: omero-dropbox
12:40:51 Building wheel for omero-dropbox (pyproject.toml): started
12:40:52 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:40:52 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=e495c775b4da07894ae2316ff4d2fe2941e4a5f5e3e6c9ca8368995cf103abc7
12:40:52 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
12:40:52 Successfully built omero-dropbox
12:40:52 Installing collected packages: omero-dropbox
12:40:52 Successfully installed omero-dropbox-5.7.1.dev0
12:40:52 + for x in *.tar.gz
12:40:52 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
12:40:52 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:40:52 Installing build dependencies: started
12:40:53 Installing build dependencies: finished with status 'done'
12:40:53 Getting requirements to build wheel: started
12:40:53 Getting requirements to build wheel: finished with status 'done'
12:40:53 Preparing metadata (pyproject.toml): started
12:40:54 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:54 Building wheels for collected packages: omero_marshal
12:40:54 Building wheel for omero_marshal (pyproject.toml): started
12:40:54 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:40:54 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=25ba2aa16d404b595af14018eea09e4f2647427dc53c3b47000c8c860f852be2
12:40:54 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
12:40:54 Successfully built omero_marshal
12:40:54 Installing collected packages: omero_marshal
12:40:54 Successfully installed omero_marshal-0.9.2.dev0
12:40:54 + for x in *.tar.gz
12:40:54 + pip install -U omero_py-5.22.0.dev0.tar.gz
12:40:54 Processing ./omero_py-5.22.0.dev0.tar.gz
12:40:55 Installing build dependencies: started
12:40:55 Installing build dependencies: finished with status 'done'
12:40:55 Getting requirements to build wheel: started
12:40:56 Getting requirements to build wheel: finished with status 'done'
12:40:56 Preparing metadata (pyproject.toml): started
12:40:56 Preparing metadata (pyproject.toml): finished with status 'done'
12:40:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
12:40:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
12:40:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
12:40:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
12:40:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
12:40:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
12:40:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
12:40:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
12:40:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
12:40:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
12:40:56 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
12:40:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
12:40:56 Building wheels for collected packages: omero-py
12:40:56 Building wheel for omero-py (pyproject.toml): started
12:40:57 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:40:57 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2785928 sha256=3b2a253cced58cb1222df6cb10ba4564662b6ece0c599c82d7bdcb8d4e5d474a
12:40:57 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
12:40:57 Successfully built omero-py
12:40:57 Installing collected packages: omero-py
12:40:57 Attempting uninstall: omero-py
12:40:57 Found existing installation: omero-py 5.21.3
12:40:57 Uninstalling omero-py-5.21.3:
12:40:58 Successfully uninstalled omero-py-5.21.3
12:40:59 Successfully installed omero-py-5.22.0.dev0
12:40:59 + for x in *.tar.gz
12:40:59 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
12:41:00 Processing ./omero_scripts-5.9.2.dev0.tar.gz
12:41:00 Installing build dependencies: started
12:41:01 Installing build dependencies: finished with status 'done'
12:41:01 Getting requirements to build wheel: started
12:41:01 Getting requirements to build wheel: finished with status 'done'
12:41:01 Preparing metadata (pyproject.toml): started
12:41:01 Preparing metadata (pyproject.toml): finished with status 'done'
12:41:01 Building wheels for collected packages: omero-scripts
12:41:01 Building wheel for omero-scripts (pyproject.toml): started
12:41:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:41:01 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=606bfb0a394816cd1de45430c7eaef27ac1e612d70048c824e49b820ceaf0790
12:41:01 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
12:41:01 Successfully built omero-scripts
12:41:01 Installing collected packages: omero-scripts
12:41:02 Successfully installed omero-scripts-5.9.2.dev0
12:41:02 + for x in *.tar.gz
12:41:02 + pip install -U omero_web-5.30.2.dev0.tar.gz
12:41:02 Processing ./omero_web-5.30.2.dev0.tar.gz
12:41:02 Installing build dependencies: started
12:41:03 Installing build dependencies: finished with status 'done'
12:41:03 Getting requirements to build wheel: started
12:41:03 Getting requirements to build wheel: finished with status 'done'
12:41:03 Preparing metadata (pyproject.toml): started
12:41:04 Preparing metadata (pyproject.toml): finished with status 'done'
12:41:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
12:41:04 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
12:41:04 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
12:41:04 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
12:41:04 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
12:41:05 Collecting django-pipeline (from omero-web==5.30.2.dev0)
12:41:05 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:41:05 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
12:41:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:41:05 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
12:41:05 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
12:41:05 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
12:41:05 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
12:41:05 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
12:41:05 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
12:41:05 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
12:41:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
12:41:05 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
12:41:05 Collecting importlib-resources (from omero-web==5.30.2.dev0)
12:41:05 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
12:41:05 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
12:41:05 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
12:41:05 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
12:41:05 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:41:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
12:41:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
12:41:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
12:41:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
12:41:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
12:41:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
12:41:05 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
12:41:05 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
12:41:05 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
12:41:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
12:41:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
12:41:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
12:41:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
12:41:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:41:05 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
12:41:05 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
12:41:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
12:41:05 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
12:41:05 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:41:05 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
12:41:05 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:41:05 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
12:41:05 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
12:41:06 Building wheels for collected packages: omero-web
12:41:06 Building wheel for omero-web (pyproject.toml): started
12:41:07 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:41:07 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819260 sha256=b0ee574437cf1bcadef051ccf5c197a42b1b24ed197002313a4d6e1420fa7175
12:41:07 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
12:41:07 Successfully built omero-web
12:41:07 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:41:09
12:41:09 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
12:41:09 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:41:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
12:41:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
12:41:09 --2026-01-14 12:41:09-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:41:10 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ...
12:41:10 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
12:41:10 HTTP request sent, awaiting response... 200 OK
12:41:10 Length: 129238 (126K) [text/plain]
12:41:10 Saving to: ‘Figure_To_Pdf.py’
12:41:10
12:41:10 0K .......... .......... .......... .......... .......... 39% 4.07M 0s
12:41:10 50K .......... .......... .......... .......... .......... 79% 11.5M 0s
12:41:10 100K .......... .......... ...... 100% 5.29M=0.02s
12:41:10
12:41:10 2026-01-14 12:41:10 (5.85 MB/s) - ‘Figure_To_Pdf.py’ saved [129238/129238]
12:41:10
12:41:10 + chmod 755 Figure_To_Pdf.py
12:41:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
12:41:10 + omero config set omero.db.name OMERO-server
12:41:11 + omero config set omero.db.host pg
12:41:12 + omero config set omero.db.user postgres
12:41:13 + omero config set omero.data.dir /home/omero/omero-server-data
12:41:14 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
12:41:16 + omero config set omero.db.poolsize 25
12:41:17 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
12:41:18 + omero config set omero.security.trustStorePassword changeit
12:41:19 + omero config set omero.mail.config true
12:41:20 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
12:41:21 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
12:41:22 + omero certificates
12:41:24 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
12:41:24 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
12:41:24 + '[' false = true ']'
12:41:24 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
12:41:24 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
12:41:24 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
12:41:24 2026-01-14 12:41:24,558 [ omego.db] DEBUG dbcommand => upgrade
12:41:24 2026-01-14 12:41:24,558 [ omego.db] DEBUG dbhost => localhost
12:41:24 2026-01-14 12:41:24,558 [ omego.db] DEBUG dbname => OMERO-server
12:41:24 2026-01-14 12:41:24,558 [ omego.db] DEBUG dbpass => omero
12:41:24 2026-01-14 12:41:24,558 [ omego.db] DEBUG dbuser => omero
12:41:24 2026-01-14 12:41:24,559 [ omego.db] DEBUG rootpass => omero
12:41:24 2026-01-14 12:41:24,559 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
12:41:24 2026-01-14 12:41:24,559 [omego.extern] INFO Executing : omero version
12:41:25 OMERO.py version:
12:41:25 OMERO.server version:
12:41:25 5.6.3-578-c0aeca986d-ice36-b18
12:41:25 5.22.0.dev0
12:41:25 2026-01-14 12:41:25,775 [omego.extern] INFO Completed [1.217 s]
12:41:25 2026-01-14 12:41:25,776 [omego.extern] DEBUG Using omero CLI from omero
12:41:25 2026-01-14 12:41:25,776 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
12:41:25 2026-01-14 12:41:25,776 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:41:25 2026-01-14 12:41:25,776 [omego.extern] INFO Executing : omero config get --show-password
12:41:26 2026-01-14 12:41:26,938 [omego.extern] INFO Completed [1.162 s]
12:41:26 2026-01-14 12:41:26,938 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:41:26 2026-01-14 12:41:26,938 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
12:41:27 2026-01-14 12:41:27,311 [omego.extern] INFO Completed [0.373 s]
12:41:27 2026-01-14 12:41:27,311 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
12:41:27 2026-01-14 12:41:27,311 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
12:41:27
12:41:27 2026-01-14 12:41:27,311 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:41:27 2026-01-14 12:41:27,311 [omego.extern] INFO Executing : omero config get --show-password
12:41:28 2026-01-14 12:41:28,469 [omego.extern] INFO Completed [1.158 s]
12:41:28 2026-01-14 12:41:28,470 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:41:28 2026-01-14 12:41:28,470 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
12:41:28 2026-01-14 12:41:28,749 [omego.extern] INFO Completed [0.280 s]
12:41:28 2026-01-14 12:41:28,750 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n'
12:41:28 2026-01-14 12:41:28,750 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:41:28 2026-01-14 12:41:28,750 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:41:28 2026-01-14 12:41:28,750 [omego.extern] INFO Executing : omero config get --show-password
12:41:29 2026-01-14 12:41:29,874 [omego.extern] INFO Completed [1.125 s]
12:41:29 2026-01-14 12:41:29,875 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:41:29 2026-01-14 12:41:29,875 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:41:30 2026-01-14 12:41:30,458 [omego.extern] INFO Completed [0.583 s]
12:41:30 2026-01-14 12:41:30,458 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
12:41:30 2026-01-14 12:41:30,458 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
12:41:30 2026-01-14 12:41:30,460 [ omego.db] INFO Database is already at OMERO5.4__0
12:41:30 + export LANG=en_US.UTF-8
12:41:30 + LANG=en_US.UTF-8
12:41:30 + export LANGUAGE=en_US:en
12:41:30 + LANGUAGE=en_US:en
12:41:30 + export LC_ALL=en_US.UTF-8
12:41:30 + LC_ALL=en_US.UTF-8
12:41:30 + BUILD_ID=DONT_KILL_ME
12:41:30 + omero admin start
12:41:36 No descriptor given. Using etc/grid/default.xml
12:41:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
12:41:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
12:41:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
12:41:46 Waiting on startup. Use CTRL-C to exit
12:41:46 + omero admin waitup
12:41:47 Waiting on startup. Use CTRL-C to exit
12:41:47 + omero admin diagnostics
12:41:48
12:41:48 ================================================================================
12:41:48 OMERO Diagnostics (admin)
12:41:48 ================================================================================
12:41:48
12:41:48 Commands: java -version 11.0.25 (/usr/bin/java)
12:41:48 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
12:41:48 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
12:41:48 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
12:41:48 Commands: psql --version 16.11 (/usr/bin/psql)
12:41:48 Commands: openssl version 3.5.11 (/usr/bin/openssl)
12:41:48
12:41:48 Component: OMERO.py 5.22.0.dev0
12:41:48 Component: OMERO.server 5.6.3-578-c0aeca986d-ice36-b18
12:41:48
12:41:48 Server: icegridnode running
12:41:48 Server: Blitz-0 active (pid = 2277, enabled)
12:41:48 Server: Indexer-0 activating (enabled)
12:41:48 Server: OMERO.Glacier2 active (pid = 2308, enabled)
12:41:48 Server: OMERO.IceStorm active (pid = 2327, enabled)
12:41:48 Server: Processor-0 active (pid = 2338, enabled)
12:41:48 Server: Tables-0 active (pid = 2351, enabled)
12:41:48
12:41:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
12:41:48 Log files: Blitz-0.log 33.5 KB errors=0 warnings=1
12:41:48 Log files: DropBox.log n/a
12:41:48 Log files: FileServer.log n/a
12:41:48 Log files: Indexer-0.log 598 B
12:41:48 Log files: MonitorServer.log n/a
12:41:48 Log files: Processor-0.log 735 B
12:41:48 Log files: Tables-0.log 961 B
12:41:48 Log files: TestDropBox.log n/a
12:41:48 Log files: master.err empty
12:41:48 Log files: master.out 30.5 KB
12:41:48 Log files: Total size 0.07 MB
12:41:48
12:41:48
12:41:48 Environment:OMERO_HOME=(unset)
12:41:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:41:48 Environment:OMERO_NODE=(unset)
12:41:48 Environment:OMERO_MASTER=(unset)
12:41:48 Environment:OMERO_USERDIR=(unset)
12:41:48 Environment:OMERO_TMPDIR=(unset)
12:41:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:41:48 Environment:PYTHONPATH=(unset)
12:41:48 Environment:ICE_HOME=/opt/ice-3.6.5
12:41:48 Environment:LD_LIBRARY_PATH=(unset)
12:41:48 Environment:DYLD_LIBRARY_PATH=(unset)
12:41:48
12:41:48 OMERO SSL port:4064
12:41:48 OMERO TCP port:4063
12:41:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
12:41:48 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
12:41:48
12:41:48 JVM settings: Blitz-${index} -Xmx7200m
12:41:48 JVM settings: Indexer-${index} -Xmx4800m
12:41:48 JVM settings: PixelData-${index} -Xmx7200m
12:41:48 JVM settings: Repository-${index} -Xmx4800m
12:41:48
12:41:48 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 14 January 2026 076fa9aaf179634bc0624ad149e79086676ac761
12:41:48 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 14 January 2026 076fa9aaf179634bc0624ad149e79086676ac761
12:41:48 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 14 January 2026 076fa9aaf179634bc0624ad149e79086676ac761
12:41:48 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 14 January 2026 8a9130fd0c0d2053b0ff1a30102990ea6fb2232f
12:41:48 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
12:41:48 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
12:41:48 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 2b03c735deca5ef1c56113107e21853bfc2f0121
12:41:49 + deactivate
12:41:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:41:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:41:49 + export PATH
12:41:49 + unset _OLD_VIRTUAL_PATH
12:41:49 + '[' -n '' ']'
12:41:49 + hash -r
12:41:49 + '[' -n '' ']'
12:41:49 + unset VIRTUAL_ENV
12:41:49 + unset VIRTUAL_ENV_PROMPT
12:41:49 + '[' '!' '' = nondestructive ']'
12:41:49 + unset -f deactivate
12:41:49 Finished: SUCCESS
