11:04:30 Started by user devspace
11:04:30 Running as SYSTEM
11:04:31 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
11:04:32 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3600318580391003210.sh
11:04:33 + source /home/settings.env
11:04:33 ++ OMERO_DB_HOST=pg
11:04:33 ++ OMERO_DB_USER=postgres
11:04:33 ++ OMERO_DB_PASS=
11:04:33 ++ OMERO_ROOT_PASS=omero
11:04:33 ++ OMERO_DATA_DIR=/OMERO
11:04:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:04:33 + OMERO_DB_NAME=OMERO-server
11:04:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:04:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:04:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:04:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:04:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
11:04:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:04:33 ++ deactivate nondestructive
11:04:33 ++ '[' -n '' ']'
11:04:33 ++ '[' -n '' ']'
11:04:33 ++ '[' -n /bin/bash -o -n '' ']'
11:04:33 ++ hash -r
11:04:33 ++ '[' -n '' ']'
11:04:33 ++ unset VIRTUAL_ENV
11:04:33 ++ '[' '!' nondestructive = nondestructive ']'
11:04:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:04:33 ++ export VIRTUAL_ENV
11:04:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:04:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:04:33 ++ export PATH
11:04:33 ++ '[' -n '' ']'
11:04:33 ++ '[' -z '' ']'
11:04:33 ++ _OLD_VIRTUAL_PS1=
11:04:33 ++ PS1='(.venv3) '
11:04:33 ++ export PS1
11:04:33 ++ '[' -n /bin/bash -o -n '' ']'
11:04:33 ++ hash -r
11:04:33 + omero admin stop
11:04:39 Traceback (most recent call last):
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/bin/omero", line 8, in <module>
11:04:39 sys.exit(main())
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/main.py", line 94, in main
11:04:39 import omero.cli
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/cli.py", line 54, in <module>
11:04:39 from omero.util.concurrency import get_event
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/util/__init__.py", line 25, in <module>
11:04:39 import omero.ObjectFactoryRegistrar as ofr
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/ObjectFactoryRegistrar.py", line 10, in <module>
11:04:39 class AcquisitionModeObjectFactory(Ice.ObjectFactory):
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/ObjectFactoryRegistrar.py", line 12, in AcquisitionModeObjectFactory
11:04:39 from omero_model_AcquisitionModeI import AcquisitionModeI
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero_model_AcquisitionModeI.py", line 20, in <module>
11:04:39 from omero.rtypes import rlong
11:04:39 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/rtypes.py", line 721, in <module>
11:04:39 class RObjectI(omero.RObject):
11:04:39 AttributeError: module 'omero' has no attribute 'RObject'
11:04:39 + echo not running
11:04:39 not running
11:04:39 + sleep 5
11:04:44 + deactivate
11:04:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:04:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:04:44 + export PATH
11:04:44 + unset _OLD_VIRTUAL_PATH
11:04:44 + '[' -n '' ']'
11:04:44 + '[' -n /bin/bash -o -n '' ']'
11:04:44 + hash -r
11:04:44 + '[' -n '' ']'
11:04:44 + unset VIRTUAL_ENV
11:04:44 + '[' '!' '' = nondestructive ']'
11:04:44 + unset -f deactivate
11:04:44 + rm -rf /home/omero/workspace/OMERO-server/.venv3
11:04:45 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
11:04:51 + '[' false = true ']'
11:04:51 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
11:04:51 Skipping PURGE_DATA:CleanDbAndRepo
11:04:51 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.2-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
11:04:58 Copied 1 artifact from "OMERO-build" build number 344
11:04:58 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 341
11:04:58 Copied 2 artifacts from "OMERO-build-build" build number 368
11:04:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4839548644543116077.sh
11:04:58 + source /home/settings.env
11:04:58 ++ OMERO_DB_HOST=pg
11:04:58 ++ OMERO_DB_USER=postgres
11:04:58 ++ OMERO_DB_PASS=
11:04:58 ++ OMERO_ROOT_PASS=omero
11:04:58 ++ OMERO_DATA_DIR=/OMERO
11:04:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:04:58 + OMERO_DB_NAME=OMERO-server
11:04:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:04:58 + mkdir -p /home/omero/omero-server-data
11:04:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:04:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:04:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:04:58 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:04:58 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:04:58 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:04:58 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:04:58 ++ ls OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
11:04:58 + ZIP=OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
11:04:58 + '[' '!' -z '' ']'
11:04:58 + DIST=OMERO.server-5.6.3-548-1677ee6b23-ice36
11:04:58 + unzip OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
11:04:58 Archive: OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/blitz/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/grid/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/profiles/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/error/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/grid/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/janelia/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/matplotlib/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/ncsa_paledit/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/seaborn/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/luts/wcif/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/analysis_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/annotation_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/export_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/figure_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/import_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/scripts/omero/util_scripts/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/server/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/share/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/share/licenses/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/misc/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__1/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__10/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__11/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__2/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__3/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__4/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__5/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__6/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__7/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__8/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3A__9/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3__4/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3__5/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3__6/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO3__7/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4.1__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4.2__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4.2__0/t/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4.3__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4.4__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO4__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.0__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.1__1/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.2__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.3__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4DEV__1/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4DEV__2/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4DEV__3/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4__0/
11:04:58 creating: OMERO.server-5.6.3-548-1677ee6b23-ice36/var/
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/LICENSE.txt
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/backup.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/blitz/mail-senders.example
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/blitz/mail-server.example
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/build.properties
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/env.bat
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/env.sh
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/hibernate.properties
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/ice.config
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/logback-cli.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/logback-indexing-cli.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/logback-indexing.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/logback.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/mime.types
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/node1.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/node2.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/omero.properties
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/profiles/psql
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/rollover.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/Windows.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/error/maintainance.html
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/grid/README
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/grid/default.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/grid/templates.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/grid/windefault.xml
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/ice.config
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/internal.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/master.cfg
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/templates/robot.template
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/etc/testdropbox.config
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/history.rst
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/OMEZarrReader.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/activation.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aggdesigner-algorithm.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aircompressor.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/annotations.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/antlr.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aopalliance.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/avatica-core.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/avatica-metrics.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aws-java-sdk-core.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aws-java-sdk-kms.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/aws-java-sdk-s3.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/base.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-all.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-anim.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-awt-util.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-bridge.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-codec.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-constants.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-css.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-dom.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-ext.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-extension.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-gui-util.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-gvt.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-i18n.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-parser.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-rasterizer-ext.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-rasterizer.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-script.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-slideshow.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-squiggle-ext.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-squiggle.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-svg-dom.jar
11:04:58 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/lib/client/batik-svgbrowser.jar
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11:05:01 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
11:05:01 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4__0/psql-header.sql
11:05:01 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4__0/schema.sql
11:05:01 inflating: OMERO.server-5.6.3-548-1677ee6b23-ice36/sql/psql/OMERO5.4__0/views.sql
11:05:01 + rm -f OMERO.server-5.6.3-548-1677ee6b23-ice36.zip
11:05:01 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-548-1677ee6b23-ice36 /home/omero/workspace/OMERO-server/OMERO.server
11:05:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:05:01 ++ deactivate nondestructive
11:05:01 ++ '[' -n '' ']'
11:05:01 ++ '[' -n '' ']'
11:05:01 ++ '[' -n /bin/bash -o -n '' ']'
11:05:01 ++ hash -r
11:05:01 ++ '[' -n '' ']'
11:05:01 ++ unset VIRTUAL_ENV
11:05:01 ++ '[' '!' nondestructive = nondestructive ']'
11:05:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:05:01 ++ export VIRTUAL_ENV
11:05:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:05:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:05:01 ++ export PATH
11:05:01 ++ '[' -n '' ']'
11:05:01 ++ '[' -z '' ']'
11:05:01 ++ _OLD_VIRTUAL_PS1=
11:05:01 ++ PS1='(.venv3) '
11:05:01 ++ export PS1
11:05:01 ++ '[' -n /bin/bash -o -n '' ']'
11:05:01 ++ hash -r
11:05:01 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
11:05:01 Collecting zeroc-ice==3.6.5
11:05:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
11:05:03 Installing collected packages: zeroc-ice
11:05:04 Successfully installed zeroc-ice-3.6.5
11:05:04 + pip install -U pip future
11:05:04 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
11:05:05 Collecting pip
11:05:05 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
11:05:05 Collecting future
11:05:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:05:05 Installing collected packages: pip, future
11:05:05 Attempting uninstall: pip
11:05:05 Found existing installation: pip 21.2.3
11:05:05 Uninstalling pip-21.2.3:
11:05:05 Successfully uninstalled pip-21.2.3
11:05:06 Successfully installed future-1.0.0 pip-25.0.1
11:05:06 + pip install markdown
11:05:07 Collecting markdown
11:05:07 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
11:05:07 Collecting importlib-metadata>=4.4 (from markdown)
11:05:07 Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB)
11:05:07 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
11:05:07 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
11:05:07 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
11:05:07 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB)
11:05:08 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
11:05:08 Installing collected packages: zipp, importlib-metadata, markdown
11:05:08 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0
11:05:08 + pip install reportlab
11:05:08 Collecting reportlab
11:05:08 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB)
11:05:09 Collecting pillow>=9.0.0 (from reportlab)
11:05:09 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
11:05:09 Collecting chardet (from reportlab)
11:05:09 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
11:05:09 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB)
11:05:09 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
11:05:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
11:05:09 Installing collected packages: pillow, chardet, reportlab
11:05:10 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1
11:05:11 + pip install omego
11:05:11 Collecting omego
11:05:11 Using cached omego-0.7.0-py3-none-any.whl
11:05:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
11:05:11 Collecting yaclifw>=0.1.1 (from omego)
11:05:11 Using cached yaclifw-0.2.0-py3-none-any.whl
11:05:11 Collecting six (from yaclifw>=0.1.1->omego)
11:05:11 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
11:05:12 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
11:05:12 Installing collected packages: six, yaclifw, omego
11:05:12 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
11:05:12 + pip install tables
11:05:12 Collecting tables
11:05:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
11:05:13 Collecting numpy>=1.19.0 (from tables)
11:05:13 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
11:05:13 Collecting numexpr>=2.6.2 (from tables)
11:05:13 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
11:05:13 Collecting packaging (from tables)
11:05:13 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
11:05:14 Collecting py-cpuinfo (from tables)
11:05:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
11:05:14 Collecting blosc2>=2.3.0 (from tables)
11:05:14 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
11:05:14 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
11:05:14 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
11:05:14 Collecting msgpack (from blosc2>=2.3.0->tables)
11:05:15 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
11:05:15 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
11:05:15 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
11:05:15 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
11:05:15 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
11:05:15 Using cached packaging-24.2-py3-none-any.whl (65 kB)
11:05:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
11:05:15 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
11:05:16 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
11:05:16 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
11:05:19 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
11:05:19 + pip install jinja2
11:05:19 Collecting jinja2
11:05:19 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
11:05:20 Collecting MarkupSafe>=2.0 (from jinja2)
11:05:20 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
11:05:20 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
11:05:20 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
11:05:20 Installing collected packages: MarkupSafe, jinja2
11:05:23 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
11:05:23 + pip install omero-py
11:05:23 Collecting omero-py
11:05:23 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB)
11:05:23 Collecting urllib3<2 (from omero-py)
11:05:23 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
11:05:23 Collecting appdirs (from omero-py)
11:05:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
11:05:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
11:05:24 Collecting numpy<2 (from omero-py)
11:05:24 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
11:05:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0)
11:05:24 Collecting PyYAML (from omero-py)
11:05:24 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
11:05:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
11:05:24 Collecting requests (from omero-py)
11:05:24 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
11:05:24 Collecting portalocker (from omero-py)
11:05:24 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
11:05:24 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
11:05:24 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
11:05:24 Collecting idna<4,>=2.5 (from requests->omero-py)
11:05:24 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
11:05:24 Collecting certifi>=2017.4.17 (from requests->omero-py)
11:05:24 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
11:05:24 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB)
11:05:24 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
11:05:24 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
11:05:24 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:05:24 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
11:05:24 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
11:05:24 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
11:05:24 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
11:05:25 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
11:05:25 Using cached idna-3.10-py3-none-any.whl (70 kB)
11:05:25 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
11:05:25 Attempting uninstall: numpy
11:05:25 Found existing installation: numpy 2.0.2
11:05:25 Uninstalling numpy-2.0.2:
11:05:25 Successfully uninstalled numpy-2.0.2
11:05:30 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
11:05:30 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
11:05:30 Collecting omero-metadata
11:05:30 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-zqcy8lu7/omero-metadata_334109b633f043dfaab87604265a0827
11:05:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-zqcy8lu7/omero-metadata_334109b633f043dfaab87604265a0827
11:05:32 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 8b1ee1836ee54ee0236f4bd7a3ffbda073eaaea1
11:05:32 Installing build dependencies: started
11:05:34 Installing build dependencies: finished with status 'done'
11:05:34 Getting requirements to build wheel: started
11:05:34 Getting requirements to build wheel: finished with status 'done'
11:05:34 Preparing metadata (pyproject.toml): started
11:05:34 Preparing metadata (pyproject.toml): finished with status 'done'
11:05:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6)
11:05:34 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
11:05:34 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.6)
11:05:34 Collecting pandas (from omero-metadata)
11:05:34 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
11:05:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
11:05:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
11:05:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
11:05:35 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
11:05:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
11:05:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
11:05:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
11:05:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
11:05:35 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
11:05:35 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
11:05:35 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
11:05:35 Collecting pytz>=2020.1 (from pandas->omero-metadata)
11:05:35 Using cached pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB)
11:05:35 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
11:05:35 Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
11:05:35 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
11:05:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
11:05:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
11:05:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
11:05:35 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
11:05:35 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
11:05:35 Using cached pytz-2025.1-py2.py3-none-any.whl (507 kB)
11:05:35 Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
11:05:36 Building wheels for collected packages: omero-metadata
11:05:36 Building wheel for omero-metadata (pyproject.toml): started
11:05:36 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
11:05:36 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=15afe9e0cba41ee6543b215ea58248cb29bebd4108179bb94beada1df6d6f1d2
11:05:36 Stored in directory: /tmp/pip-ephem-wheel-cache-b0f77zr0/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
11:05:36 Successfully built omero-metadata
11:05:36 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
11:05:41 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.1 tzdata-2025.1
11:05:41 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
11:05:41 Collecting omero-cli-render
11:05:41 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-53qsone0/omero-cli-render_b756075660d74320ab0612d78ece0838
11:05:41 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-53qsone0/omero-cli-render_b756075660d74320ab0612d78ece0838
11:05:42 Running command git checkout -b merge_ci --track origin/merge_ci
11:05:42 Switched to a new branch 'merge_ci'
11:05:42 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:05:42 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 06de8eae8b8890847695372c58fe788de2e30de7
11:05:42 Installing build dependencies: started
11:05:44 Installing build dependencies: finished with status 'done'
11:05:44 Getting requirements to build wheel: started
11:05:44 Getting requirements to build wheel: finished with status 'done'
11:05:44 Preparing metadata (pyproject.toml): started
11:05:44 Preparing metadata (pyproject.toml): finished with status 'done'
11:05:44 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
11:05:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6)
11:05:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
11:05:44 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
11:05:44 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
11:05:44 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
11:05:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
11:05:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
11:05:44 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
11:05:44 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
11:05:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
11:05:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
11:05:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
11:05:44 Building wheels for collected packages: omero-cli-render
11:05:44 Building wheel for omero-cli-render (pyproject.toml): started
11:05:45 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
11:05:45 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19595 sha256=94370d4d84c933abe05f2cd0defd55dd5e5e6d7a25c8f40676f56b2dd72c995d
11:05:45 Stored in directory: /tmp/pip-ephem-wheel-cache-j8zihx60/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
11:05:45 Successfully built omero-cli-render
11:05:45 Installing collected packages: omero-cli-render
11:05:46 Successfully installed omero-cli-render-0.8.2.dev0
11:05:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
11:05:47 Collecting omero-cli-duplicate
11:05:47 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-q2y05zwa/omero-cli-duplicate_16fc4dcc6b5a4cda903a1ec1ccdcafdc
11:05:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-q2y05zwa/omero-cli-duplicate_16fc4dcc6b5a4cda903a1ec1ccdcafdc
11:05:47 Running command git checkout -b merge_ci --track origin/merge_ci
11:05:48 Switched to a new branch 'merge_ci'
11:05:48 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:05:48 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 7ad61e3bce341ea1b8952c4cf931f058b1e6dca7
11:05:48 Installing build dependencies: started
11:05:49 Installing build dependencies: finished with status 'done'
11:05:49 Getting requirements to build wheel: started
11:05:50 Getting requirements to build wheel: finished with status 'done'
11:05:50 Preparing metadata (pyproject.toml): started
11:05:50 Preparing metadata (pyproject.toml): finished with status 'done'
11:05:50 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6)
11:05:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
11:05:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
11:05:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
11:05:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
11:05:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
11:05:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
11:05:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
11:05:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
11:05:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
11:05:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
11:05:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
11:05:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
11:05:50 Building wheels for collected packages: omero-cli-duplicate
11:05:50 Building wheel for omero-cli-duplicate (pyproject.toml): started
11:05:50 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
11:05:50 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=a49c77cd60d094ae29c1eb6c0452e1169811697f0b4e5b73530b64074c4c8bc9
11:05:50 Stored in directory: /tmp/pip-ephem-wheel-cache-5ffvc8my/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
11:05:50 Successfully built omero-cli-duplicate
11:05:50 Installing collected packages: omero-cli-duplicate
11:05:50 Successfully installed omero-cli-duplicate-0.4.1.dev0
11:05:50 + pip install omero-certificates
11:05:51 Collecting omero-certificates
11:05:51 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
11:05:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6)
11:05:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
11:05:51 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
11:05:51 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
11:05:51 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
11:05:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
11:05:51 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
11:05:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
11:05:51 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
11:05:51 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
11:05:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
11:05:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
11:05:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
11:05:51 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
11:05:51 Installing collected packages: omero-certificates
11:05:51 Successfully installed omero-certificates-0.4.0
11:05:51 + for x in *.tar.gz
11:05:51 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
11:05:51 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
11:05:51 Installing build dependencies: started
11:05:53 Installing build dependencies: finished with status 'done'
11:05:53 Getting requirements to build wheel: started
11:05:53 Getting requirements to build wheel: finished with status 'done'
11:05:53 Preparing metadata (pyproject.toml): started
11:05:53 Preparing metadata (pyproject.toml): finished with status 'done'
11:05:53 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6)
11:05:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
11:05:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
11:05:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
11:05:53 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
11:05:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
11:05:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
11:05:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
11:05:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
11:05:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
11:05:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
11:05:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
11:05:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
11:05:53 Building wheels for collected packages: omero-dropbox
11:05:53 Building wheel for omero-dropbox (pyproject.toml): started
11:05:54 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
11:05:54 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49139 sha256=b278160fe0abaaf2555966168079f259a4c69847dfd8dd8a898a611bbf772105
11:05:54 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
11:05:54 Successfully built omero-dropbox
11:05:54 Installing collected packages: omero-dropbox
11:05:54 Successfully installed omero-dropbox-5.7.1.dev0
11:05:54 + for x in *.tar.gz
11:05:54 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
11:05:54 Processing ./omero_marshal-0.9.1.dev0.tar.gz
11:05:54 Installing build dependencies: started
11:05:56 Installing build dependencies: finished with status 'done'
11:05:56 Getting requirements to build wheel: started
11:05:56 Getting requirements to build wheel: finished with status 'done'
11:05:56 Preparing metadata (pyproject.toml): started
11:05:56 Preparing metadata (pyproject.toml): finished with status 'done'
11:05:56 Building wheels for collected packages: omero_marshal
11:05:56 Building wheel for omero_marshal (pyproject.toml): started
11:05:57 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
11:05:57 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=53904d879bd3f6a0e705f98e4cbf318cef9bc186e73f917133403c0fac3149ae
11:05:57 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
11:05:57 Successfully built omero_marshal
11:05:57 Installing collected packages: omero_marshal
11:05:57 Successfully installed omero_marshal-0.9.1.dev0
11:05:57 + for x in *.tar.gz
11:05:57 + pip install -U omero_py-5.19.7.dev0.tar.gz
11:05:57 Processing ./omero_py-5.19.7.dev0.tar.gz
11:05:58 Installing build dependencies: started
11:06:00 Installing build dependencies: finished with status 'done'
11:06:00 Getting requirements to build wheel: started
11:06:00 Getting requirements to build wheel: finished with status 'done'
11:06:00 Preparing metadata (pyproject.toml): started
11:06:00 Preparing metadata (pyproject.toml): finished with status 'done'
11:06:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20)
11:06:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4)
11:06:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0)
11:06:00 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4)
11:06:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0)
11:06:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2)
11:06:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5)
11:06:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3)
11:06:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1)
11:06:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1)
11:06:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10)
11:06:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2025.1.31)
11:06:00 Building wheels for collected packages: omero-py
11:06:00 Building wheel for omero-py (pyproject.toml): started
11:06:02 Building wheel for omero-py (pyproject.toml): finished with status 'done'
11:06:02 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=4640877 sha256=b78dc915a773aa09f3a1cd00f87f3145db6865f80b052be973010120f62f28f9
11:06:02 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b
11:06:02 Successfully built omero-py
11:06:02 Installing collected packages: omero-py
11:06:02 Attempting uninstall: omero-py
11:06:02 Found existing installation: omero-py 5.19.6
11:06:02 Uninstalling omero-py-5.19.6:
11:06:03 Successfully uninstalled omero-py-5.19.6
11:06:07 Successfully installed omero-py-5.19.7.dev0
11:06:07 + for x in *.tar.gz
11:06:07 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
11:06:08 Processing ./omero_scripts-5.9.1.dev0.tar.gz
11:06:08 Installing build dependencies: started
11:06:09 Installing build dependencies: finished with status 'done'
11:06:09 Getting requirements to build wheel: started
11:06:09 Getting requirements to build wheel: finished with status 'done'
11:06:09 Preparing metadata (pyproject.toml): started
11:06:10 Preparing metadata (pyproject.toml): finished with status 'done'
11:06:10 Building wheels for collected packages: omero-scripts
11:06:10 Building wheel for omero-scripts (pyproject.toml): started
11:06:10 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
11:06:10 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=b38ea8b673bd22b6a663ebfc938330b2b534b9097e3b2fb66abda60258842bba
11:06:10 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
11:06:10 Successfully built omero-scripts
11:06:10 Installing collected packages: omero-scripts
11:06:10 Successfully installed omero-scripts-5.9.1.dev0
11:06:10 + for x in *.tar.gz
11:06:10 + pip install -U omero_web-5.29.1.dev0.tar.gz
11:06:11 Processing ./omero_web-5.29.1.dev0.tar.gz
11:06:11 Installing build dependencies: started
11:06:13 Installing build dependencies: finished with status 'done'
11:06:13 Getting requirements to build wheel: started
11:06:13 Getting requirements to build wheel: finished with status 'done'
11:06:13 Preparing metadata (pyproject.toml): started
11:06:13 Preparing metadata (pyproject.toml): finished with status 'done'
11:06:13 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (5.19.7.dev0)
11:06:14 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
11:06:14 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
11:06:14 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
11:06:14 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
11:06:14 Collecting django-pipeline (from omero-web==5.29.1.dev0)
11:06:14 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
11:06:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
11:06:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
11:06:14 Collecting django-csp (from omero-web==5.29.1.dev0)
11:06:14 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
11:06:14 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
11:06:14 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
11:06:14 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
11:06:14 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
11:06:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
11:06:14 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
11:06:14 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (2025.1)
11:06:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
11:06:14 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.29.1.dev0) (24.2)
11:06:14 Collecting importlib-resources (from omero-web==5.29.1.dev0)
11:06:14 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
11:06:14 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
11:06:14 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
11:06:14 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
11:06:14 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
11:06:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
11:06:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
11:06:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
11:06:14 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
11:06:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
11:06:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
11:06:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
11:06:14 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (53.0.0)
11:06:15 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
11:06:15 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
11:06:15 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.29.1.dev0) (3.21.0)
11:06:15 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
11:06:15 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
11:06:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
11:06:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
11:06:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
11:06:15 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
11:06:15 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
11:06:15 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
11:06:15 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
11:06:15 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
11:06:15 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
11:06:15 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
11:06:15 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
11:06:15 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
11:06:15 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
11:06:15 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
11:06:15 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
11:06:15 Building wheels for collected packages: omero-web
11:06:15 Building wheel for omero-web (pyproject.toml): started
11:06:16 Building wheel for omero-web (pyproject.toml): finished with status 'done'
11:06:16 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817948 sha256=fe1b1e33641219160be6bd6611d478325dc0efa8616743d2b6496270d27a3fef
11:06:16 Stored in directory: /home/omero/.cache/pip/wheels/20/6a/be/a0eb92c362960a201e1b2f293382a92507134b48bed64ccadd
11:06:16 Successfully built omero-web
11:06:16 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
11:06:19 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.9.0
11:06:19 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:06:20 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
11:06:20 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
11:06:20 --2025-03-20 11:06:20-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:06:21 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ...
11:06:21 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
11:06:21 HTTP request sent, awaiting response... 200 OK
11:06:21 Length: 115659 (113K) [text/plain]
11:06:21 Saving to: ‘Figure_To_Pdf.py’
11:06:21
11:06:21 0K .......... .......... .......... .......... .......... 44% 3.45M 0s
11:06:21 50K .......... .......... .......... .......... .......... 88% 4.83M 0s
11:06:21 100K .......... .. 100% 216M=0.02s
11:06:21
11:06:21 2025-03-20 11:06:21 (4.54 MB/s) - ‘Figure_To_Pdf.py’ saved [115659/115659]
11:06:21
11:06:21 + chmod 755 Figure_To_Pdf.py
11:06:21 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
11:06:21 + omero config set omero.db.name OMERO-server
11:06:21 Traceback (most recent call last):
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/bin/omero", line 8, in <module>
11:06:21 sys.exit(main())
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/main.py", line 94, in main
11:06:21 import omero.cli
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/cli.py", line 54, in <module>
11:06:21 from omero.util.concurrency import get_event
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/util/__init__.py", line 25, in <module>
11:06:21 import omero.ObjectFactoryRegistrar as ofr
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/ObjectFactoryRegistrar.py", line 10, in <module>
11:06:21 class AcquisitionModeObjectFactory(Ice.ObjectFactory):
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/ObjectFactoryRegistrar.py", line 12, in AcquisitionModeObjectFactory
11:06:21 from omero_model_AcquisitionModeI import AcquisitionModeI
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero_model_AcquisitionModeI.py", line 20, in <module>
11:06:21 from omero.rtypes import rlong
11:06:21 File "/home/omero/workspace/OMERO-server/.venv3/lib64/python3.9/site-packages/omero/rtypes.py", line 721, in <module>
11:06:21 class RObjectI(omero.RObject):
11:06:21 AttributeError: module 'omero' has no attribute 'RObject'
11:06:21 Build step 'Execute shell' marked build as failure
11:06:21 Finished: FAILURE
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