09:55:46 Started by upstream project "Trigger" build number 423
09:55:46 originally caused by:
09:55:46 Started by user devspace
09:55:46 Running as SYSTEM
09:55:46 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:55:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4353733295659994238.sh
09:55:47 + source /home/settings.env
09:55:47 ++ OMERO_DB_HOST=pg
09:55:47 ++ OMERO_DB_USER=postgres
09:55:47 ++ OMERO_DB_PASS=
09:55:47 ++ OMERO_ROOT_PASS=omero
09:55:47 ++ OMERO_DATA_DIR=/OMERO
09:55:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:55:47 + OMERO_DB_NAME=OMERO-server
09:55:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:55:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:55:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:55:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:55:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:55:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:55:47 ++ deactivate nondestructive
09:55:47 ++ '[' -n '' ']'
09:55:47 ++ '[' -n '' ']'
09:55:47 ++ hash -r
09:55:47 ++ '[' -n '' ']'
09:55:47 ++ unset VIRTUAL_ENV
09:55:47 ++ unset VIRTUAL_ENV_PROMPT
09:55:47 ++ '[' '!' nondestructive = nondestructive ']'
09:55:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:55:47 ++ export VIRTUAL_ENV
09:55:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:55:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:55:47 ++ export PATH
09:55:47 ++ '[' -n '' ']'
09:55:47 ++ '[' -z '' ']'
09:55:47 ++ _OLD_VIRTUAL_PS1=
09:55:47 ++ PS1='(.venv3) '
09:55:47 ++ export PS1
09:55:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:55:47 ++ export VIRTUAL_ENV_PROMPT
09:55:47 ++ hash -r
09:55:47 + omero admin stop
09:55:52 Waiting on shutdown. Use CTRL-C to exit
09:55:52 .+ sleep 5
09:56:07 + deactivate
09:56:07 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:56:07 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:56:07 + export PATH
09:56:07 + unset _OLD_VIRTUAL_PATH
09:56:07 + '[' -n '' ']'
09:56:07 + hash -r
09:56:07 + '[' -n '' ']'
09:56:07 + unset VIRTUAL_ENV
09:56:07 + unset VIRTUAL_ENV_PROMPT
09:56:07 + '[' '!' '' = nondestructive ']'
09:56:07 + unset -f deactivate
09:56:07 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:56:07 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
09:56:13 + '[' false = true ']'
09:56:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:56:13 Skipping PURGE_DATA:CleanDbAndRepo
09:56:13 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:56:15 Copied 1 artifact from "OMERO-build" build number 365
09:56:16 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 357
09:56:16 Copied 2 artifacts from "OMERO-build-build" build number 384
09:56:16 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4600676108235978648.sh
09:56:16 + source /home/settings.env
09:56:16 ++ OMERO_DB_HOST=pg
09:56:16 ++ OMERO_DB_USER=postgres
09:56:16 ++ OMERO_DB_PASS=
09:56:16 ++ OMERO_ROOT_PASS=omero
09:56:16 ++ OMERO_DATA_DIR=/OMERO
09:56:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:56:16 + OMERO_DB_NAME=OMERO-server
09:56:16 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:56:16 + mkdir -p /home/omero/omero-server-data
09:56:16 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:56:16 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:56:16 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:56:16 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:56:16 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:56:16 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:56:16 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:56:16 ++ ls OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:56:16 + ZIP=OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:56:16 + '[' '!' -z '' ']'
09:56:16 + DIST=OMERO.server-5.6.3-546-205da1defd-ice36-b365
09:56:16 + unzip OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:56:16 Archive: OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/blitz/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/grid/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/profiles/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/error/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/grid/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/janelia/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/matplotlib/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/ncsa_paledit/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/seaborn/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/luts/wcif/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/analysis_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/annotation_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/export_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/figure_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/import_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/scripts/omero/util_scripts/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/server/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/share/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/share/licenses/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/misc/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__1/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__10/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__11/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__2/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__3/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__4/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__5/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__6/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__7/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__8/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3A__9/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3__4/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3__5/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3__6/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO3__7/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4.1__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4.2__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4.2__0/t/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4.3__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4.4__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO4__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.0__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.1__1/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.2__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.3__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__1/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__2/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__3/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/
09:56:16 creating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/var/
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/LICENSE.txt
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/backup.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/blitz/mail-senders.example
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/blitz/mail-server.example
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/build.properties
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/env.bat
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/env.sh
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/hibernate.properties
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/ice.config
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/logback-cli.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/logback-indexing-cli.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/logback-indexing.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/logback.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/mime.types
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/node1.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/node2.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/omero.properties
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/profiles/psql
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/rollover.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/Windows.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/error/maintainance.html
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/grid/README
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/grid/default.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/grid/templates.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/grid/windefault.xml
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/ice.config
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/internal.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/master.cfg
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/templates/robot.template
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/etc/testdropbox.config
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/history.rst
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/OMEZarrReader.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/activation.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aggdesigner-algorithm.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aircompressor.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/annotations.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/antlr.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aopalliance.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/avatica-core.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/avatica-metrics.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aws-java-sdk-core.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aws-java-sdk-kms.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/aws-java-sdk-s3.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/base.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-all.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-anim.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-awt-util.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-bridge.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-codec.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-constants.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-css.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-dom.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-ext.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-extension.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-gui-util.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-gvt.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-i18n.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-parser.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-rasterizer-ext.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-rasterizer.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-script.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-slideshow.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-squiggle-ext.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-squiggle.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-svg-dom.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-svgbrowser.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-svggen.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-svgpp.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-svgrasterizer.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-swing.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-transcoder.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-ttf2svg.jar
09:56:16 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/lib/client/batik-util.jar
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09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/psql-footer.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/psql-header.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/schema.sql
09:56:18 inflating: OMERO.server-5.6.3-546-205da1defd-ice36-b365/sql/psql/OMERO5.4__0/views.sql
09:56:18 + rm -f OMERO.server-5.6.3-546-205da1defd-ice36-b365.zip
09:56:18 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-546-205da1defd-ice36-b365 /home/omero/workspace/OMERO-server/OMERO.server
09:56:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:56:18 ++ deactivate nondestructive
09:56:18 ++ '[' -n '' ']'
09:56:18 ++ '[' -n '' ']'
09:56:18 ++ hash -r
09:56:18 ++ '[' -n '' ']'
09:56:18 ++ unset VIRTUAL_ENV
09:56:18 ++ unset VIRTUAL_ENV_PROMPT
09:56:18 ++ '[' '!' nondestructive = nondestructive ']'
09:56:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:56:18 ++ export VIRTUAL_ENV
09:56:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:56:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:56:18 ++ export PATH
09:56:18 ++ '[' -n '' ']'
09:56:18 ++ '[' -z '' ']'
09:56:18 ++ _OLD_VIRTUAL_PS1=
09:56:18 ++ PS1='(.venv3) '
09:56:18 ++ export PS1
09:56:18 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:56:18 ++ export VIRTUAL_ENV_PROMPT
09:56:18 ++ hash -r
09:56:18 + pip install -U pip
09:56:19 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
09:56:19 Collecting pip
09:56:19 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
09:56:19 Installing collected packages: pip
09:56:19 Attempting uninstall: pip
09:56:19 Found existing installation: pip 22.3.1
09:56:19 Uninstalling pip-22.3.1:
09:56:19 Successfully uninstalled pip-22.3.1
09:56:20 Successfully installed pip-25.0.1
09:56:20 WARNING: There was an error checking the latest version of pip.
09:56:20 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:56:21 Collecting zeroc-ice==3.6.5
09:56:21 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:56:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.2 MB/s eta 0:00:00
09:56:25 Installing collected packages: zeroc-ice
09:56:25 Successfully installed zeroc-ice-3.6.5
09:56:26 + pip install markdown
09:56:26 Collecting markdown
09:56:26 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
09:56:26 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
09:56:26 Installing collected packages: markdown
09:56:26 Successfully installed markdown-3.7
09:56:26 + pip install reportlab
09:56:27 Collecting reportlab
09:56:27 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB)
09:56:27 Collecting pillow>=9.0.0 (from reportlab)
09:56:27 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
09:56:27 Collecting chardet (from reportlab)
09:56:27 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
09:56:27 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB)
09:56:27 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
09:56:28 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
09:56:28 Installing collected packages: pillow, chardet, reportlab
09:56:29 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1
09:56:29 + pip install omego
09:56:29 Collecting omego
09:56:29 Using cached omego-0.7.0-py3-none-any.whl
09:56:29 Collecting future (from omego)
09:56:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:56:30 Collecting yaclifw>=0.1.1 (from omego)
09:56:30 Using cached yaclifw-0.2.0-py3-none-any.whl
09:56:30 Collecting six (from yaclifw>=0.1.1->omego)
09:56:30 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:56:30 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:56:30 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:56:30 Installing collected packages: six, future, yaclifw, omego
09:56:30 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
09:56:31 + pip install tables
09:56:31 Collecting tables
09:56:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
09:56:31 Collecting numpy>=1.20.0 (from tables)
09:56:31 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
09:56:31 Collecting numexpr>=2.6.2 (from tables)
09:56:32 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
09:56:32 Collecting packaging (from tables)
09:56:32 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
09:56:32 Collecting py-cpuinfo (from tables)
09:56:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:56:32 Collecting blosc2>=2.3.0 (from tables)
09:56:32 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
09:56:32 Collecting typing-extensions>=4.4.0 (from tables)
09:56:32 Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB)
09:56:32 Collecting ndindex (from blosc2>=2.3.0->tables)
09:56:32 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
09:56:33 Collecting msgpack (from blosc2>=2.3.0->tables)
09:56:33 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
09:56:33 Collecting platformdirs (from blosc2>=2.3.0->tables)
09:56:33 Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB)
09:56:33 Collecting requests (from blosc2>=2.3.0->tables)
09:56:33 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
09:56:33 Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
09:56:33 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
09:56:33 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
09:56:33 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
09:56:34 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
09:56:34 Using cached urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB)
09:56:34 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
09:56:34 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
09:56:34 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:56:34 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
09:56:34 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB)
09:56:34 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
09:56:34 Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB)
09:56:35 Using cached packaging-24.2-py3-none-any.whl (65 kB)
09:56:35 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:56:35 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
09:56:35 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB)
09:56:35 Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB)
09:56:35 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
09:56:35 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
09:56:35 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
09:56:35 Using cached idna-3.10-py3-none-any.whl (70 kB)
09:56:35 Using cached urllib3-2.3.0-py3-none-any.whl (128 kB)
09:56:35 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables
09:56:39 Successfully installed blosc2-3.2.1 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.4 packaging-24.2 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.0 urllib3-2.3.0
09:56:39 + pip install jinja2
09:56:39 Collecting jinja2
09:56:39 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
09:56:39 Collecting MarkupSafe>=2.0 (from jinja2)
09:56:39 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
09:56:40 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
09:56:40 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
09:56:40 Installing collected packages: MarkupSafe, jinja2
09:56:40 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
09:56:40 + pip install omero-py
09:56:40 Collecting omero-py
09:56:40 Using cached omero_py-5.19.8-py3-none-any.whl.metadata (6.5 kB)
09:56:41 Collecting urllib3<2 (from omero-py)
09:56:41 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
09:56:41 Collecting appdirs (from omero-py)
09:56:41 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:56:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
09:56:41 Collecting numpy<2 (from omero-py)
09:56:41 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
09:56:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.1.0)
09:56:41 Collecting PyYAML (from omero-py)
09:56:41 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
09:56:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:56:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3)
09:56:41 Collecting portalocker (from omero-py)
09:56:41 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
09:56:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1)
09:56:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
09:56:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31)
09:56:42 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
09:56:42 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
09:56:42 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:56:42 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:56:42 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
09:56:42 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
09:56:42 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, omero-py
09:56:42 Attempting uninstall: urllib3
09:56:42 Found existing installation: urllib3 2.3.0
09:56:42 Uninstalling urllib3-2.3.0:
09:56:42 Successfully uninstalled urllib3-2.3.0
09:56:43 Attempting uninstall: numpy
09:56:43 Found existing installation: numpy 2.2.4
09:56:43 Uninstalling numpy-2.2.4:
09:56:43 Successfully uninstalled numpy-2.2.4
09:56:47 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 urllib3-1.26.20
09:56:47 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:56:47 Collecting omero-metadata
09:56:47 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-u7h3x_ny/omero-metadata_3308e0d4caf24c1098f10ec490141357
09:56:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-u7h3x_ny/omero-metadata_3308e0d4caf24c1098f10ec490141357
09:56:48 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit c3ab7d846eb67aa2b5932d48045eb6689bd68c5c
09:56:48 Installing build dependencies: started
09:56:51 Installing build dependencies: finished with status 'done'
09:56:51 Getting requirements to build wheel: started
09:56:52 Getting requirements to build wheel: finished with status 'done'
09:56:52 Preparing metadata (pyproject.toml): started
09:56:52 Preparing metadata (pyproject.toml): finished with status 'done'
09:56:52 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.19.8)
09:56:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
09:56:52 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
09:56:52 Collecting pandas (from omero-metadata)
09:56:52 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
09:56:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
09:56:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:56:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:56:52 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
09:56:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
09:56:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:56:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
09:56:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
09:56:52 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
09:56:52 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:56:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:56:52 Collecting pytz>=2020.1 (from pandas->omero-metadata)
09:56:52 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
09:56:52 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
09:56:52 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
09:56:52 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
09:56:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
09:56:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
09:56:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
09:56:52 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
09:56:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:56:52 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
09:56:52 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
09:56:52 Building wheels for collected packages: omero-metadata
09:56:52 Building wheel for omero-metadata (pyproject.toml): started
09:56:53 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:56:53 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=a25659f45c2e2fd53b5b33b72c12a97f04c1a784ed1a22c6352f8eda557c5f50
09:56:53 Stored in directory: /tmp/pip-ephem-wheel-cache-mmhu6prj/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
09:56:53 Successfully built omero-metadata
09:56:53 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
09:56:58 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2
09:56:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:56:58 Collecting omero-cli-render
09:56:58 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-fl51v47b/omero-cli-render_623c5ec3b14e4b2ca084e0ccf614cd57
09:56:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-fl51v47b/omero-cli-render_623c5ec3b14e4b2ca084e0ccf614cd57
09:56:59 Running command git checkout -b merge_ci --track origin/merge_ci
09:56:59 Switched to a new branch 'merge_ci'
09:56:59 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:56:59 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a47812925f21f76aa44aaa7eb9ae123957036796
09:56:59 Installing build dependencies: started
09:57:01 Installing build dependencies: finished with status 'done'
09:57:01 Getting requirements to build wheel: started
09:57:01 Getting requirements to build wheel: finished with status 'done'
09:57:01 Preparing metadata (pyproject.toml): started
09:57:01 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
09:57:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.19.8)
09:57:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
09:57:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:57:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:57:01 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
09:57:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
09:57:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:57:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
09:57:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
09:57:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
09:57:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
09:57:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
09:57:01 Building wheels for collected packages: omero-cli-render
09:57:01 Building wheel for omero-cli-render (pyproject.toml): started
09:57:01 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:57:01 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19592 sha256=201934ab3b85513ef07e06dcc68abdfa45228e14d81e1c31c2402352e86678c1
09:57:01 Stored in directory: /tmp/pip-ephem-wheel-cache-4fcz4bvd/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
09:57:01 Successfully built omero-cli-render
09:57:01 Installing collected packages: omero-cli-render
09:57:01 Successfully installed omero-cli-render-0.8.2.dev0
09:57:02 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:57:02 Collecting omero-cli-duplicate
09:57:02 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-cab_urqn/omero-cli-duplicate_029c4bdac01942f985fa9b84325985f2
09:57:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-cab_urqn/omero-cli-duplicate_029c4bdac01942f985fa9b84325985f2
09:57:03 Running command git checkout -b merge_ci --track origin/merge_ci
09:57:03 Switched to a new branch 'merge_ci'
09:57:03 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:57:03 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 88e7c003109d6c1e60768367d3feafb093494d31
09:57:03 Installing build dependencies: started
09:57:04 Installing build dependencies: finished with status 'done'
09:57:04 Getting requirements to build wheel: started
09:57:05 Getting requirements to build wheel: finished with status 'done'
09:57:05 Preparing metadata (pyproject.toml): started
09:57:05 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:05 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8)
09:57:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
09:57:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:57:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:57:05 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
09:57:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
09:57:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
09:57:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:57:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
09:57:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
09:57:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
09:57:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
09:57:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
09:57:05 Building wheels for collected packages: omero-cli-duplicate
09:57:05 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:57:05 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:57:05 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=3f8259bb9d923190824483eed640e308c25a3a3cfb7fb53c02ac1980b7bf6264
09:57:05 Stored in directory: /tmp/pip-ephem-wheel-cache-nury5tr2/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
09:57:05 Successfully built omero-cli-duplicate
09:57:05 Installing collected packages: omero-cli-duplicate
09:57:05 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:57:05 + pip install omero-certificates
09:57:06 Collecting omero-certificates
09:57:06 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
09:57:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8)
09:57:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
09:57:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:57:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:57:06 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
09:57:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
09:57:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
09:57:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:57:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
09:57:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
09:57:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
09:57:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
09:57:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
09:57:06 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
09:57:06 Installing collected packages: omero-certificates
09:57:06 Successfully installed omero-certificates-0.4.0
09:57:06 + for x in *.tar.gz
09:57:06 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:57:06 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:57:06 Installing build dependencies: started
09:57:08 Installing build dependencies: finished with status 'done'
09:57:08 Getting requirements to build wheel: started
09:57:08 Getting requirements to build wheel: finished with status 'done'
09:57:08 Preparing metadata (pyproject.toml): started
09:57:08 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:08 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8)
09:57:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
09:57:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:57:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:57:08 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
09:57:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
09:57:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
09:57:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:57:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
09:57:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
09:57:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
09:57:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
09:57:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
09:57:08 Building wheels for collected packages: omero-dropbox
09:57:08 Building wheel for omero-dropbox (pyproject.toml): started
09:57:09 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:57:09 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=98852f630158de73bafa8dd325f80c9975cc2ddf202aa26b00626399e54d2259
09:57:09 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
09:57:09 Successfully built omero-dropbox
09:57:09 Installing collected packages: omero-dropbox
09:57:09 Successfully installed omero-dropbox-5.7.1.dev0
09:57:09 + for x in *.tar.gz
09:57:09 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
09:57:09 Processing ./omero_marshal-0.9.1.dev0.tar.gz
09:57:09 Installing build dependencies: started
09:57:11 Installing build dependencies: finished with status 'done'
09:57:11 Getting requirements to build wheel: started
09:57:11 Getting requirements to build wheel: finished with status 'done'
09:57:11 Preparing metadata (pyproject.toml): started
09:57:11 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:11 Building wheels for collected packages: omero_marshal
09:57:11 Building wheel for omero_marshal (pyproject.toml): started
09:57:12 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:57:12 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=599a41896786cf2093829dffe026e35964116088a58be5b9a46a935b1f07d2fa
09:57:12 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
09:57:12 Successfully built omero_marshal
09:57:12 Installing collected packages: omero_marshal
09:57:12 Successfully installed omero_marshal-0.9.1.dev0
09:57:12 + for x in *.tar.gz
09:57:12 + pip install -U omero_py-5.20.0.dev0.tar.gz
09:57:12 Processing ./omero_py-5.20.0.dev0.tar.gz
09:57:13 Installing build dependencies: started
09:57:14 Installing build dependencies: finished with status 'done'
09:57:14 Getting requirements to build wheel: started
09:57:14 Getting requirements to build wheel: finished with status 'done'
09:57:14 Preparing metadata (pyproject.toml): started
09:57:14 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.20)
09:57:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.4.4)
09:57:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.0.0)
09:57:14 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.4)
09:57:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (11.1.0)
09:57:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (6.0.2)
09:57:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.6.5)
09:57:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (2.32.3)
09:57:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.1.1)
09:57:14 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.4.1)
09:57:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.10)
09:57:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (2025.1.31)
09:57:15 Building wheels for collected packages: omero-py
09:57:15 Building wheel for omero-py (pyproject.toml): started
09:57:16 Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:57:16 Created wheel for omero-py: filename=omero_py-5.20.0.dev0-py3-none-any.whl size=2783560 sha256=f86d5510f63ee6e6b9db5b7100892aa2f0c61047631ba400f095b9b7135f0e0e
09:57:16 Stored in directory: /home/omero/.cache/pip/wheels/5c/d3/f5/669c3cf10fa717cb3e978234d9c068a609ce43910a81d0cc7a
09:57:16 Successfully built omero-py
09:57:16 Installing collected packages: omero-py
09:57:16 Attempting uninstall: omero-py
09:57:16 Found existing installation: omero-py 5.19.8
09:57:16 Uninstalling omero-py-5.19.8:
09:57:16 Successfully uninstalled omero-py-5.19.8
09:57:18 Successfully installed omero-py-5.20.0.dev0
09:57:18 + for x in *.tar.gz
09:57:18 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
09:57:19 Processing ./omero_scripts-5.9.1.dev0.tar.gz
09:57:19 Installing build dependencies: started
09:57:20 Installing build dependencies: finished with status 'done'
09:57:20 Getting requirements to build wheel: started
09:57:20 Getting requirements to build wheel: finished with status 'done'
09:57:20 Preparing metadata (pyproject.toml): started
09:57:21 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:21 Building wheels for collected packages: omero-scripts
09:57:21 Building wheel for omero-scripts (pyproject.toml): started
09:57:21 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:57:21 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=e363001868b0317f9f79960879c285fa38b8a6c289e5a81d8e7cadeaa0be38bf
09:57:21 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed
09:57:21 Successfully built omero-scripts
09:57:21 Installing collected packages: omero-scripts
09:57:21 Successfully installed omero-scripts-5.9.1.dev0
09:57:21 + for x in *.tar.gz
09:57:21 + pip install -U omero_web-5.29.1.dev0.tar.gz
09:57:21 Processing ./omero_web-5.29.1.dev0.tar.gz
09:57:22 Installing build dependencies: started
09:57:23 Installing build dependencies: finished with status 'done'
09:57:23 Getting requirements to build wheel: started
09:57:24 Getting requirements to build wheel: finished with status 'done'
09:57:24 Preparing metadata (pyproject.toml): started
09:57:24 Preparing metadata (pyproject.toml): finished with status 'done'
09:57:24 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.0.dev0)
09:57:24 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
09:57:24 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
09:57:24 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
09:57:24 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
09:57:25 Collecting django-pipeline (from omero-web==5.29.1.dev0)
09:57:25 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
09:57:25 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
09:57:25 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:57:25 Collecting django-csp (from omero-web==5.29.1.dev0)
09:57:25 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
09:57:25 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
09:57:25 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
09:57:25 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
09:57:25 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
09:57:25 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
09:57:25 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
09:57:25 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
09:57:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
09:57:25 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2)
09:57:25 Collecting importlib-resources (from omero-web==5.29.1.dev0)
09:57:25 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
09:57:25 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
09:57:25 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
09:57:25 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
09:57:25 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
09:57:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
09:57:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
09:57:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
09:57:25 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
09:57:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
09:57:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
09:57:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
09:57:25 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1)
09:57:25 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
09:57:25 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
09:57:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
09:57:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
09:57:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
09:57:25 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:57:25 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
09:57:25 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
09:57:25 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
09:57:25 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
09:57:25 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
09:57:25 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
09:57:25 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
09:57:25 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
09:57:26 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
09:57:26 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
09:57:26 Building wheels for collected packages: omero-web
09:57:26 Building wheel for omero-web (pyproject.toml): started
09:57:27 Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:57:27 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=81869a2318adea9373ddf86faad172ae91d7829fc817352cadb7df803540d6d2
09:57:27 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a
09:57:27 Successfully built omero-web
09:57:27 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
09:57:30 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
09:57:30 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:57:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:57:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:57:31 --2025-03-30 09:57:31-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:57:31 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.108.133, ...
09:57:31 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
09:57:31 HTTP request sent, awaiting response... 200 OK
09:57:31 Length: 121749 (119K) [text/plain]
09:57:31 Saving to: ‘Figure_To_Pdf.py’
09:57:31
09:57:31 0K .......... .......... .......... .......... .......... 42% 3.56M 0s
09:57:31 50K .......... .......... .......... .......... .......... 84% 5.15M 0s
09:57:31 100K .......... ........ 100% 39.9M=0.02s
09:57:31
09:57:31 2025-03-30 09:57:31 (4.90 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749]
09:57:31
09:57:31 + chmod 755 Figure_To_Pdf.py
09:57:31 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:57:31 + omero config set omero.db.name OMERO-server
09:57:32 + omero config set omero.db.host pg
09:57:34 + omero config set omero.db.user postgres
09:57:35 + omero config set omero.data.dir /home/omero/omero-server-data
09:57:36 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:57:37 + omero config set omero.db.poolsize 25
09:57:39 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:57:40 + omero config set omero.security.trustStorePassword changeit
09:57:41 + omero config set omero.mail.config true
09:57:42 + omero config set omero.mail.from qa@openmicroscopy.org.uk
09:57:43 + omero config set omero.mail.host smtp.dundee.ac.uk
09:57:45 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:57:46 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:57:47 + omero certificates
09:57:48 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
09:57:48 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:57:49 + '[' false = true ']'
09:57:49 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:57:49 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:57:49 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG dbcommand => upgrade
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG dbhost => localhost
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG dbname => OMERO-server
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG dbpass => omero
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG dbuser => omero
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG rootpass => omero
09:57:49 2025-03-30 09:57:49,233 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:57:49 2025-03-30 09:57:49,233 [omego.extern] INFO Executing : omero version
09:57:50 OMERO.py version:
09:57:50 OMERO.server version:
09:57:50 5.6.3-546-205da1defd-ice36-b365
09:57:50 5.20.0.dev0
09:57:50 2025-03-30 09:57:50,510 [omego.extern] INFO Completed [1.276 s]
09:57:50 2025-03-30 09:57:50,510 [omego.extern] DEBUG Using omero CLI from omero
09:57:50 2025-03-30 09:57:50,510 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:57:50 2025-03-30 09:57:50,510 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:57:50 2025-03-30 09:57:50,510 [omego.extern] INFO Executing : omero config get --show-password
09:57:51 2025-03-30 09:57:51,789 [omego.extern] INFO Completed [1.279 s]
09:57:51 2025-03-30 09:57:51,789 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:57:51 2025-03-30 09:57:51,790 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:57:51 2025-03-30 09:57:51,854 [omego.extern] INFO Completed [0.065 s]
09:57:51 2025-03-30 09:57:51,854 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n'
09:57:51 2025-03-30 09:57:51,854 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8
09:57:51
09:57:51 2025-03-30 09:57:51,854 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:57:51 2025-03-30 09:57:51,854 [omego.extern] INFO Executing : omero config get --show-password
09:57:53 2025-03-30 09:57:53,080 [omego.extern] INFO Completed [1.226 s]
09:57:53 2025-03-30 09:57:53,080 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:57:53 2025-03-30 09:57:53,081 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:57:53 2025-03-30 09:57:53,090 [omego.extern] INFO Completed [0.010 s]
09:57:53 2025-03-30 09:57:53,090 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
09:57:53 2025-03-30 09:57:53,090 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:57:53 2025-03-30 09:57:53,090 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:57:53 2025-03-30 09:57:53,091 [omego.extern] INFO Executing : omero config get --show-password
09:57:54 2025-03-30 09:57:54,315 [omego.extern] INFO Completed [1.225 s]
09:57:54 2025-03-30 09:57:54,315 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:57:54 2025-03-30 09:57:54,315 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:57:54 2025-03-30 09:57:54,635 [omego.extern] INFO Completed [0.319 s]
09:57:54 2025-03-30 09:57:54,635 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:57:54 2025-03-30 09:57:54,635 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
09:57:54 2025-03-30 09:57:54,636 [ omego.db] INFO Database is already at OMERO5.4__0
09:57:54 + export LANG=en_US.UTF-8
09:57:54 + LANG=en_US.UTF-8
09:57:54 + export LANGUAGE=en_US:en
09:57:54 + LANGUAGE=en_US:en
09:57:54 + export LC_ALL=en_US.UTF-8
09:57:54 + LC_ALL=en_US.UTF-8
09:57:54 + BUILD_ID=DONT_KILL_ME
09:57:54 + omero admin start
09:58:03 No descriptor given. Using etc/grid/default.xml
09:58:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:58:17 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:58:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:58:17 Waiting on startup. Use CTRL-C to exit
09:58:17 + omero admin waitup
09:58:18 Waiting on startup. Use CTRL-C to exit
09:58:19 + omero admin diagnostics
09:58:21
09:58:21 ================================================================================
09:58:21 OMERO Diagnostics (admin)
09:58:21 ================================================================================
09:58:21
09:58:21 Commands: java -version 11.0.25 (/usr/bin/java)
09:58:21 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:58:21 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
09:58:21 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
09:58:21 Commands: psql --version 16.8 (/usr/bin/psql)
09:58:21 Commands: openssl version 3.2.24 (/usr/bin/openssl)
09:58:21
09:58:21 Component: OMERO.py 5.20.0.dev0
09:58:21 Component: OMERO.server 5.6.3-546-205da1defd-ice36-b365
09:58:21
09:58:21 Server: icegridnode running
09:58:21 Server: Blitz-0 active (pid = 16211, enabled)
09:58:21 Server: Indexer-0 active (pid = 16231, enabled)
09:58:21 Server: OMERO.Glacier2 active (pid = 16254, enabled)
09:58:21 Server: OMERO.IceStorm active (pid = 16258, enabled)
09:58:21 Server: Processor-0 activating (enabled)
09:58:21 Server: Tables-0 activating (enabled)
09:58:21
09:58:21 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:58:21 Log files: Blitz-0.log 23.4 KB errors=0 warnings=1
09:58:21 Log files: DropBox.log n/a
09:58:21 Log files: FileServer.log n/a
09:58:21 Log files: Indexer-0.log 2.4 KB
09:58:21 Log files: MonitorServer.log n/a
09:58:21 Log files: Processor-0.log 592 B
09:58:21 Log files: Tables-0.log 842 B
09:58:21 Log files: TestDropBox.log n/a
09:58:21 Log files: master.err 25.6 KB
09:58:21 Log files: master.out 30.5 KB
09:58:21 Log files: Total size 0.08 MB
09:58:21
09:58:21
09:58:21 Environment:OMERO_HOME=(unset)
09:58:21 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:58:21 Environment:OMERO_NODE=(unset)
09:58:21 Environment:OMERO_MASTER=(unset)
09:58:21 Environment:OMERO_USERDIR=(unset)
09:58:21 Environment:OMERO_TMPDIR=(unset)
09:58:21 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:58:21 Environment:PYTHONPATH=(unset)
09:58:21 Environment:ICE_HOME=/opt/ice-3.6.5
09:58:21 Environment:LD_LIBRARY_PATH=(unset)
09:58:21 Environment:DYLD_LIBRARY_PATH=(unset)
09:58:21
09:58:21 OMERO SSL port:4064
09:58:21 OMERO TCP port:4063
09:58:21 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
09:58:21 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
09:58:21
09:58:21 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:58:21 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:58:21 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:58:21 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:58:21
09:58:21 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 30 March 2025 b7f800afc5a926851981c16f12db03a14dab8c36
09:58:21 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 30 March 2025 b7f800afc5a926851981c16f12db03a14dab8c36
09:58:21 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 30 March 2025 b7f800afc5a926851981c16f12db03a14dab8c36
09:58:21 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 30 March 2025 901bfed78926246ba2141a2a1ce1edc2c74b71da
09:58:21 Jar: lib/server/omero-blitz.jar jar 5.8.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-gateway.jar jar 5.10.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT
09:58:21 Jar: lib/server/omero-server.jar jar 5.7.3-SNAPSHOT
09:58:21 + deactivate
09:58:21 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:58:21 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:58:21 + export PATH
09:58:21 + unset _OLD_VIRTUAL_PATH
09:58:21 + '[' -n '' ']'
09:58:21 + hash -r
09:58:21 + '[' -n '' ']'
09:58:21 + unset VIRTUAL_ENV
09:58:21 + unset VIRTUAL_ENV_PROMPT
09:58:21 + '[' '!' '' = nondestructive ']'
09:58:21 + unset -f deactivate
09:58:21 Finished: SUCCESS
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