01:54:28 Started by upstream project "Trigger" build number 425
01:54:28 originally caused by:
01:54:28 Started by timer
01:54:28 Running as SYSTEM
01:54:28 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:54:28 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7727807083649716454.sh
01:54:28 + source /home/settings.env
01:54:28 ++ OMERO_DB_HOST=pg
01:54:28 ++ OMERO_DB_USER=postgres
01:54:28 ++ OMERO_DB_PASS=
01:54:28 ++ OMERO_ROOT_PASS=omero
01:54:28 ++ OMERO_DATA_DIR=/OMERO
01:54:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:54:28 + OMERO_DB_NAME=OMERO-server
01:54:28 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:54:28 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:54:28 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:54:28 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:54:28 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:54:28 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:54:28 ++ deactivate nondestructive
01:54:28 ++ '[' -n '' ']'
01:54:28 ++ '[' -n '' ']'
01:54:28 ++ hash -r
01:54:28 ++ '[' -n '' ']'
01:54:28 ++ unset VIRTUAL_ENV
01:54:28 ++ unset VIRTUAL_ENV_PROMPT
01:54:28 ++ '[' '!' nondestructive = nondestructive ']'
01:54:28 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:54:28 ++ export VIRTUAL_ENV
01:54:28 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:54:28 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:54:28 ++ export PATH
01:54:28 ++ '[' -n '' ']'
01:54:28 ++ '[' -z '' ']'
01:54:28 ++ _OLD_VIRTUAL_PS1=
01:54:28 ++ PS1='(.venv3) '
01:54:28 ++ export PS1
01:54:28 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:54:28 ++ export VIRTUAL_ENV_PROMPT
01:54:28 ++ hash -r
01:54:28 + omero admin stop
01:54:29 Waiting on shutdown. Use CTRL-C to exit
01:54:29 .+ sleep 5
01:54:44 + deactivate
01:54:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:54:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:54:44 + export PATH
01:54:44 + unset _OLD_VIRTUAL_PATH
01:54:44 + '[' -n '' ']'
01:54:44 + hash -r
01:54:44 + '[' -n '' ']'
01:54:44 + unset VIRTUAL_ENV
01:54:44 + unset VIRTUAL_ENV_PROMPT
01:54:44 + '[' '!' '' = nondestructive ']'
01:54:44 + unset -f deactivate
01:54:44 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:54:45 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
01:54:49 + '[' false = true ']'
01:54:49 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:54:49 Skipping PURGE_DATA:CleanDbAndRepo
01:54:49 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:54:51 Copied 1 artifact from "OMERO-build" build number 367
01:54:51 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 359
01:54:51 Copied 2 artifacts from "OMERO-build-build" build number 385
01:54:51 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9535071124307157748.sh
01:54:51 + source /home/settings.env
01:54:51 ++ OMERO_DB_HOST=pg
01:54:51 ++ OMERO_DB_USER=postgres
01:54:51 ++ OMERO_DB_PASS=
01:54:51 ++ OMERO_ROOT_PASS=omero
01:54:51 ++ OMERO_DATA_DIR=/OMERO
01:54:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:54:51 + OMERO_DB_NAME=OMERO-server
01:54:51 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:54:51 + mkdir -p /home/omero/omero-server-data
01:54:51 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:54:51 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:54:51 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:54:51 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:54:51 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:54:51 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:54:51 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:54:51 ++ ls OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip
01:54:51 + ZIP=OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip
01:54:51 + '[' '!' -z '' ']'
01:54:51 + DIST=OMERO.server-5.6.3-548-4b631c68af-ice36-b367
01:54:51 + unzip OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip
01:54:51 Archive: OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/blitz/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/grid/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/profiles/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/error/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/grid/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/janelia/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/matplotlib/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/ncsa_paledit/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/seaborn/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/luts/wcif/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/analysis_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/annotation_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/export_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/figure_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/import_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/scripts/omero/util_scripts/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/server/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/share/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/share/licenses/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/misc/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__1/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__10/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__11/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__2/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__3/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__4/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__5/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__6/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__7/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__8/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3A__9/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3__4/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3__5/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3__6/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3__7/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.1__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.2__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.2__0/t/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.3__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.4__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.0__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.1__1/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.2__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__1/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__2/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__3/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/
01:54:51 creating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/var/
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/LICENSE.txt
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/backup.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/blitz/mail-senders.example
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/blitz/mail-server.example
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/build.properties
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/env.bat
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/env.sh
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/hibernate.properties
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/ice.config
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/logback-cli.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/logback-indexing-cli.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/logback-indexing.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/logback.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/mime.types
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/node1.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/node2.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/omero.properties
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/profiles/psql
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/rollover.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/Windows.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/error/maintainance.html
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/grid/README
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/grid/default.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/grid/templates.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/grid/windefault.xml
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/ice.config
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/internal.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/master.cfg
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/templates/robot.template
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/etc/testdropbox.config
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/history.rst
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/OMEZarrReader.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/activation.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aggdesigner-algorithm.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aircompressor.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/annotations.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/antlr.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aopalliance.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/avatica-core.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/avatica-metrics.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aws-java-sdk-core.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aws-java-sdk-kms.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/aws-java-sdk-s3.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/base.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-all.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-anim.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-awt-util.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-bridge.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-codec.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-constants.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-css.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-dom.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-ext.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-extension.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-gui-util.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-gvt.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-i18n.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-parser.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-rasterizer-ext.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-rasterizer.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-script.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-slideshow.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-squiggle-ext.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-squiggle.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-svg-dom.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-svgbrowser.jar
01:54:51 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/lib/client/batik-svggen.jar
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01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO3__7/OMERO3__6.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO4__0/OMERO3A__11.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/psql-footer.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/psql-header.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/schema.sql
01:54:54 inflating: OMERO.server-5.6.3-548-4b631c68af-ice36-b367/sql/psql/OMERO5.4__0/views.sql
01:54:54 + rm -f OMERO.server-5.6.3-548-4b631c68af-ice36-b367.zip
01:54:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-548-4b631c68af-ice36-b367 /home/omero/workspace/OMERO-server/OMERO.server
01:54:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:54:54 ++ deactivate nondestructive
01:54:54 ++ '[' -n '' ']'
01:54:54 ++ '[' -n '' ']'
01:54:54 ++ hash -r
01:54:54 ++ '[' -n '' ']'
01:54:54 ++ unset VIRTUAL_ENV
01:54:54 ++ unset VIRTUAL_ENV_PROMPT
01:54:54 ++ '[' '!' nondestructive = nondestructive ']'
01:54:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:54:54 ++ export VIRTUAL_ENV
01:54:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:54:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:54:54 ++ export PATH
01:54:54 ++ '[' -n '' ']'
01:54:54 ++ '[' -z '' ']'
01:54:54 ++ _OLD_VIRTUAL_PS1=
01:54:54 ++ PS1='(.venv3) '
01:54:54 ++ export PS1
01:54:54 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:54:54 ++ export VIRTUAL_ENV_PROMPT
01:54:54 ++ hash -r
01:54:54 + pip install -U pip
01:54:54 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:54:54 Collecting pip
01:54:54 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
01:54:54 Installing collected packages: pip
01:54:54 Attempting uninstall: pip
01:54:54 Found existing installation: pip 22.3.1
01:54:55 Uninstalling pip-22.3.1:
01:54:55 Successfully uninstalled pip-22.3.1
01:54:56 Successfully installed pip-25.0.1
01:54:56 WARNING: There was an error checking the latest version of pip.
01:54:56 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:54:56 Collecting zeroc-ice==3.6.5
01:54:57 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:54:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.4 MB/s eta 0:00:00
01:54:59 Installing collected packages: zeroc-ice
01:55:00 Successfully installed zeroc-ice-3.6.5
01:55:00 + pip install markdown
01:55:00 Collecting markdown
01:55:00 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:55:00 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:55:00 Installing collected packages: markdown
01:55:00 Successfully installed markdown-3.7
01:55:00 + pip install reportlab
01:55:01 Collecting reportlab
01:55:01 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB)
01:55:01 Collecting pillow>=9.0.0 (from reportlab)
01:55:01 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:55:02 Collecting chardet (from reportlab)
01:55:02 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:55:02 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB)
01:55:02 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
01:55:02 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:55:02 Installing collected packages: pillow, chardet, reportlab
01:55:03 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1
01:55:03 + pip install omego
01:55:04 Collecting omego
01:55:04 Using cached omego-0.7.0-py3-none-any.whl
01:55:04 Collecting future (from omego)
01:55:04 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:55:04 Collecting yaclifw>=0.1.1 (from omego)
01:55:04 Using cached yaclifw-0.2.0-py3-none-any.whl
01:55:04 Collecting six (from yaclifw>=0.1.1->omego)
01:55:04 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:55:04 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:55:04 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:55:04 Installing collected packages: six, future, yaclifw, omego
01:55:04 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
01:55:04 + pip install tables
01:55:05 Collecting tables
01:55:05 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
01:55:05 Collecting numpy>=1.20.0 (from tables)
01:55:05 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
01:55:05 Collecting numexpr>=2.6.2 (from tables)
01:55:05 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
01:55:05 Collecting packaging (from tables)
01:55:05 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
01:55:05 Collecting py-cpuinfo (from tables)
01:55:05 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:55:05 Collecting blosc2>=2.3.0 (from tables)
01:55:05 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
01:55:05 Collecting typing-extensions>=4.4.0 (from tables)
01:55:05 Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB)
01:55:05 Collecting ndindex (from blosc2>=2.3.0->tables)
01:55:05 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:55:05 Collecting msgpack (from blosc2>=2.3.0->tables)
01:55:05 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:55:05 Collecting platformdirs (from blosc2>=2.3.0->tables)
01:55:05 Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB)
01:55:05 Collecting requests (from blosc2>=2.3.0->tables)
01:55:05 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:55:05 Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
01:55:05 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:55:05 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
01:55:05 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:55:06 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
01:55:06 Using cached urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB)
01:55:06 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
01:55:06 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
01:55:06 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:55:06 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:55:06 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB)
01:55:06 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
01:55:06 Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB)
01:55:06 Using cached packaging-24.2-py3-none-any.whl (65 kB)
01:55:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:55:06 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
01:55:06 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB)
01:55:06 Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB)
01:55:06 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:55:06 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
01:55:06 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
01:55:06 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:55:06 Using cached urllib3-2.3.0-py3-none-any.whl (128 kB)
01:55:06 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables
01:55:09 Successfully installed blosc2-3.2.1 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.4 packaging-24.2 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.0 urllib3-2.3.0
01:55:09 + pip install jinja2
01:55:10 Collecting jinja2
01:55:10 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:55:10 Collecting MarkupSafe>=2.0 (from jinja2)
01:55:10 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:55:10 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:55:10 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
01:55:10 Installing collected packages: MarkupSafe, jinja2
01:55:10 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
01:55:10 + pip install omero-py
01:55:10 Collecting omero-py
01:55:10 Using cached omero_py-5.19.8-py3-none-any.whl.metadata (6.5 kB)
01:55:10 Collecting urllib3<2 (from omero-py)
01:55:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:55:10 Collecting appdirs (from omero-py)
01:55:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:55:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
01:55:11 Collecting numpy<2 (from omero-py)
01:55:11 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:55:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.1.0)
01:55:11 Collecting PyYAML (from omero-py)
01:55:11 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:55:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:55:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3)
01:55:11 Collecting portalocker (from omero-py)
01:55:11 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:55:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1)
01:55:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
01:55:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31)
01:55:11 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
01:55:11 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
01:55:11 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:55:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:55:11 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:55:11 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:55:11 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, omero-py
01:55:11 Attempting uninstall: urllib3
01:55:11 Found existing installation: urllib3 2.3.0
01:55:11 Uninstalling urllib3-2.3.0:
01:55:11 Successfully uninstalled urllib3-2.3.0
01:55:11 Attempting uninstall: numpy
01:55:11 Found existing installation: numpy 2.2.4
01:55:11 Uninstalling numpy-2.2.4:
01:55:11 Successfully uninstalled numpy-2.2.4
01:55:15 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 urllib3-1.26.20
01:55:15 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:55:15 Collecting omero-metadata
01:55:15 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-10dzogl7/omero-metadata_12bd22a902ed4421bf3d1a342b710531
01:55:15 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-10dzogl7/omero-metadata_12bd22a902ed4421bf3d1a342b710531
01:55:16 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f8c964e89abd2bfb5fcddd1c64132f16925d5469
01:55:16 Installing build dependencies: started
01:55:19 Installing build dependencies: finished with status 'done'
01:55:19 Getting requirements to build wheel: started
01:55:19 Getting requirements to build wheel: finished with status 'done'
01:55:19 Preparing metadata (pyproject.toml): started
01:55:19 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.19.8)
01:55:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
01:55:19 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
01:55:19 Collecting pandas (from omero-metadata)
01:55:19 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:55:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:55:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:55:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:55:19 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:55:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
01:55:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:55:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:55:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
01:55:19 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
01:55:19 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:55:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:55:19 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:55:19 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
01:55:19 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:55:19 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
01:55:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:55:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
01:55:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:55:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
01:55:19 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:55:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:55:19 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
01:55:19 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
01:55:19 Building wheels for collected packages: omero-metadata
01:55:19 Building wheel for omero-metadata (pyproject.toml): started
01:55:20 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:55:20 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=b4fcf08fd8c3a970b8b7a174b3fb9d17e5028c689122b6197f1635d0080ea487
01:55:20 Stored in directory: /tmp/pip-ephem-wheel-cache-_nzxt01_/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
01:55:20 Successfully built omero-metadata
01:55:20 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:55:25 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2
01:55:25 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:55:25 Collecting omero-cli-render
01:55:25 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ko7vpqqq/omero-cli-render_46b5bfc146fb4e19b6df5f6c7eee6c0d
01:55:25 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ko7vpqqq/omero-cli-render_46b5bfc146fb4e19b6df5f6c7eee6c0d
01:55:26 Running command git checkout -b merge_ci --track origin/merge_ci
01:55:26 Switched to a new branch 'merge_ci'
01:55:26 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:55:26 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bad7c4354f853a7f5c87d0d7404e836815121cf2
01:55:26 Installing build dependencies: started
01:55:28 Installing build dependencies: finished with status 'done'
01:55:28 Getting requirements to build wheel: started
01:55:28 Getting requirements to build wheel: finished with status 'done'
01:55:28 Preparing metadata (pyproject.toml): started
01:55:28 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
01:55:28 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.19.8)
01:55:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:55:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:55:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:55:28 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:55:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
01:55:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:55:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:55:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
01:55:28 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
01:55:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:55:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
01:55:28 Building wheels for collected packages: omero-cli-render
01:55:28 Building wheel for omero-cli-render (pyproject.toml): started
01:55:28 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:55:28 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19592 sha256=8a05c3923eeafd92d23b974fbb7f8c8c2c1ffee41565252362d08e84c47d269d
01:55:28 Stored in directory: /tmp/pip-ephem-wheel-cache-z3cao79v/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
01:55:28 Successfully built omero-cli-render
01:55:28 Installing collected packages: omero-cli-render
01:55:28 Successfully installed omero-cli-render-0.8.2.dev0
01:55:28 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:55:29 Collecting omero-cli-duplicate
01:55:29 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-3x1ggz66/omero-cli-duplicate_50c3d65711cc4f93a47053957b503740
01:55:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-3x1ggz66/omero-cli-duplicate_50c3d65711cc4f93a47053957b503740
01:55:30 Running command git checkout -b merge_ci --track origin/merge_ci
01:55:30 Switched to a new branch 'merge_ci'
01:55:30 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:55:30 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 846762f078c4c3be6683e5e4199bf7cc6ff92a26
01:55:30 Installing build dependencies: started
01:55:31 Installing build dependencies: finished with status 'done'
01:55:31 Getting requirements to build wheel: started
01:55:32 Getting requirements to build wheel: finished with status 'done'
01:55:32 Preparing metadata (pyproject.toml): started
01:55:32 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:32 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8)
01:55:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:55:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:55:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:55:32 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:55:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
01:55:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:55:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:55:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:55:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
01:55:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
01:55:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:55:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
01:55:32 Building wheels for collected packages: omero-cli-duplicate
01:55:32 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:55:32 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:55:32 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=af5e92ace9e29a8a44749fc02ede636c87a0100f580d7aab2789a7c562d347b0
01:55:32 Stored in directory: /tmp/pip-ephem-wheel-cache-z6z84mua/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
01:55:32 Successfully built omero-cli-duplicate
01:55:32 Installing collected packages: omero-cli-duplicate
01:55:32 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:55:32 + pip install omero-certificates
01:55:33 Collecting omero-certificates
01:55:33 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
01:55:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8)
01:55:33 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:55:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:55:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:55:33 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:55:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
01:55:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:55:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:55:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:55:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
01:55:33 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
01:55:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:55:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
01:55:33 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
01:55:33 Installing collected packages: omero-certificates
01:55:33 Successfully installed omero-certificates-0.4.0
01:55:33 + for x in *.tar.gz
01:55:33 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:55:33 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:55:33 Installing build dependencies: started
01:55:35 Installing build dependencies: finished with status 'done'
01:55:35 Getting requirements to build wheel: started
01:55:35 Getting requirements to build wheel: finished with status 'done'
01:55:35 Preparing metadata (pyproject.toml): started
01:55:35 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:35 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8)
01:55:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:55:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:55:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:55:35 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:55:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
01:55:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:55:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:55:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:55:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
01:55:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
01:55:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:55:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
01:55:35 Building wheels for collected packages: omero-dropbox
01:55:35 Building wheel for omero-dropbox (pyproject.toml): started
01:55:35 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:55:35 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=72f3c304c2b212bfc14cc5c8da82c443227d2d7f797749e85b3ebe6f3aa8556f
01:55:35 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
01:55:35 Successfully built omero-dropbox
01:55:36 Installing collected packages: omero-dropbox
01:55:36 Successfully installed omero-dropbox-5.7.1.dev0
01:55:36 + for x in *.tar.gz
01:55:36 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:55:36 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:55:36 Installing build dependencies: started
01:55:38 Installing build dependencies: finished with status 'done'
01:55:38 Getting requirements to build wheel: started
01:55:38 Getting requirements to build wheel: finished with status 'done'
01:55:38 Preparing metadata (pyproject.toml): started
01:55:38 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:38 Building wheels for collected packages: omero_marshal
01:55:38 Building wheel for omero_marshal (pyproject.toml): started
01:55:38 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:55:38 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=06b53c3787764b98f3977f66c008a534bcde37a7fe8b20074993055eff8d2c68
01:55:38 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
01:55:38 Successfully built omero_marshal
01:55:38 Installing collected packages: omero_marshal
01:55:39 Successfully installed omero_marshal-0.9.1.dev0
01:55:39 + for x in *.tar.gz
01:55:39 + pip install -U omero_py-5.20.0.dev0.tar.gz
01:55:39 Processing ./omero_py-5.20.0.dev0.tar.gz
01:55:39 Installing build dependencies: started
01:55:41 Installing build dependencies: finished with status 'done'
01:55:41 Getting requirements to build wheel: started
01:55:41 Getting requirements to build wheel: finished with status 'done'
01:55:41 Preparing metadata (pyproject.toml): started
01:55:41 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.20)
01:55:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.4.4)
01:55:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.0.0)
01:55:41 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.4)
01:55:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (11.1.0)
01:55:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (6.0.2)
01:55:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.6.5)
01:55:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (2.32.3)
01:55:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.1.1)
01:55:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.4.1)
01:55:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.10)
01:55:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (2025.1.31)
01:55:41 Building wheels for collected packages: omero-py
01:55:41 Building wheel for omero-py (pyproject.toml): started
01:55:43 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:55:43 Created wheel for omero-py: filename=omero_py-5.20.0.dev0-py3-none-any.whl size=2783337 sha256=3e7643f9b964719b61f18528178bc6731184373d79ccb2c47a9b3b273fe99006
01:55:43 Stored in directory: /home/omero/.cache/pip/wheels/5c/d3/f5/669c3cf10fa717cb3e978234d9c068a609ce43910a81d0cc7a
01:55:43 Successfully built omero-py
01:55:43 Installing collected packages: omero-py
01:55:43 Attempting uninstall: omero-py
01:55:43 Found existing installation: omero-py 5.19.8
01:55:43 Uninstalling omero-py-5.19.8:
01:55:43 Successfully uninstalled omero-py-5.19.8
01:55:47 Successfully installed omero-py-5.20.0.dev0
01:55:47 + for x in *.tar.gz
01:55:47 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
01:55:48 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:55:48 Installing build dependencies: started
01:55:49 Installing build dependencies: finished with status 'done'
01:55:49 Getting requirements to build wheel: started
01:55:49 Getting requirements to build wheel: finished with status 'done'
01:55:49 Preparing metadata (pyproject.toml): started
01:55:49 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:49 Building wheels for collected packages: omero-scripts
01:55:49 Building wheel for omero-scripts (pyproject.toml): started
01:55:50 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:55:50 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=2a685f798f1b0af28a40675de43635c8450b64025fac24d5490bcc94cf2348bc
01:55:50 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed
01:55:50 Successfully built omero-scripts
01:55:50 Installing collected packages: omero-scripts
01:55:50 Successfully installed omero-scripts-5.9.1.dev0
01:55:50 + for x in *.tar.gz
01:55:50 + pip install -U omero_web-5.29.1.dev0.tar.gz
01:55:50 Processing ./omero_web-5.29.1.dev0.tar.gz
01:55:51 Installing build dependencies: started
01:55:52 Installing build dependencies: finished with status 'done'
01:55:52 Getting requirements to build wheel: started
01:55:52 Getting requirements to build wheel: finished with status 'done'
01:55:52 Preparing metadata (pyproject.toml): started
01:55:53 Preparing metadata (pyproject.toml): finished with status 'done'
01:55:53 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.0.dev0)
01:55:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
01:55:53 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:55:53 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
01:55:53 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
01:55:53 Collecting django-pipeline (from omero-web==5.29.1.dev0)
01:55:53 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:55:53 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
01:55:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:55:53 Collecting django-csp (from omero-web==5.29.1.dev0)
01:55:53 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:55:53 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
01:55:53 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
01:55:53 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
01:55:53 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:55:53 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
01:55:53 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
01:55:53 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
01:55:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
01:55:53 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2)
01:55:53 Collecting importlib-resources (from omero-web==5.29.1.dev0)
01:55:53 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
01:55:53 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:55:53 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:55:53 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:55:53 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:55:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
01:55:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
01:55:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
01:55:53 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
01:55:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
01:55:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
01:55:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
01:55:53 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1)
01:55:53 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
01:55:53 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:55:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
01:55:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
01:55:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
01:55:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:55:53 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:55:53 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
01:55:53 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:55:53 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
01:55:53 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:55:53 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:55:53 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
01:55:53 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:55:53 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:55:53 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:55:53 Building wheels for collected packages: omero-web
01:55:53 Building wheel for omero-web (pyproject.toml): started
01:55:55 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:55:55 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=9902989cce497e27a9993b362ae151022a52526f92266dff96a4e7c1c1eb7b89
01:55:55 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a
01:55:55 Successfully built omero-web
01:55:55 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
01:55:57 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
01:55:58 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:55:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:55:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:55:58 --2025-03-31 01:55:58-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:55:58 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
01:55:58 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
01:55:58 HTTP request sent, awaiting response... 200 OK
01:55:58 Length: 121749 (119K) [text/plain]
01:55:58 Saving to: ‘Figure_To_Pdf.py’
01:55:58
01:55:58 0K .......... .......... .......... .......... .......... 42% 3.49M 0s
01:55:58 50K .......... .......... .......... .......... .......... 84% 5.10M 0s
01:55:58 100K .......... ........ 100% 26.1M=0.02s
01:55:58
01:55:58 2025-03-31 01:55:58 (4.78 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749]
01:55:58
01:55:58 + chmod 755 Figure_To_Pdf.py
01:55:58 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:55:58 + omero config set omero.db.name OMERO-server
01:55:59 + omero config set omero.db.host pg
01:56:01 + omero config set omero.db.user postgres
01:56:02 + omero config set omero.data.dir /home/omero/omero-server-data
01:56:03 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:56:04 + omero config set omero.db.poolsize 25
01:56:05 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:56:07 + omero config set omero.security.trustStorePassword changeit
01:56:08 + omero config set omero.mail.config true
01:56:09 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:56:10 + omero config set omero.mail.host smtp.dundee.ac.uk
01:56:12 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:56:13 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:56:14 + omero certificates
01:56:15 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
01:56:15 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:56:15 + '[' false = true ']'
01:56:15 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:56:15 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:56:15 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG dbcommand => upgrade
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG dbhost => localhost
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG dbname => OMERO-server
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG dbpass => omero
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG dbuser => omero
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG rootpass => omero
01:56:16 2025-03-31 01:56:16,045 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:56:16 2025-03-31 01:56:16,045 [omego.extern] INFO Executing : omero version
01:56:17 OMERO.py version:
01:56:17 OMERO.server version:
01:56:17 5.6.3-548-4b631c68af-ice36-b367
01:56:17 5.20.0.dev0
01:56:17 2025-03-31 01:56:17,349 [omego.extern] INFO Completed [1.304 s]
01:56:17 2025-03-31 01:56:17,349 [omego.extern] DEBUG Using omero CLI from omero
01:56:17 2025-03-31 01:56:17,349 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:56:17 2025-03-31 01:56:17,349 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:56:17 2025-03-31 01:56:17,349 [omego.extern] INFO Executing : omero config get --show-password
01:56:18 2025-03-31 01:56:18,565 [omego.extern] INFO Completed [1.216 s]
01:56:18 2025-03-31 01:56:18,566 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:56:18 2025-03-31 01:56:18,566 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:56:18 2025-03-31 01:56:18,571 [omego.extern] INFO Completed [0.006 s]
01:56:18 2025-03-31 01:56:18,571 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n'
01:56:18 2025-03-31 01:56:18,572 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8
01:56:18
01:56:18 2025-03-31 01:56:18,572 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:56:18 2025-03-31 01:56:18,572 [omego.extern] INFO Executing : omero config get --show-password
01:56:19 2025-03-31 01:56:19,785 [omego.extern] INFO Completed [1.213 s]
01:56:19 2025-03-31 01:56:19,785 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:56:19 2025-03-31 01:56:19,785 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:56:19 2025-03-31 01:56:19,795 [omego.extern] INFO Completed [0.010 s]
01:56:19 2025-03-31 01:56:19,795 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
01:56:19 2025-03-31 01:56:19,795 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:56:19 2025-03-31 01:56:19,795 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:56:19 2025-03-31 01:56:19,795 [omego.extern] INFO Executing : omero config get --show-password
01:56:21 2025-03-31 01:56:21,013 [omego.extern] INFO Completed [1.218 s]
01:56:21 2025-03-31 01:56:21,013 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:56:21 2025-03-31 01:56:21,013 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:56:21 2025-03-31 01:56:21,024 [omego.extern] INFO Completed [0.011 s]
01:56:21 2025-03-31 01:56:21,024 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:56:21 2025-03-31 01:56:21,024 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
01:56:21 2025-03-31 01:56:21,026 [ omego.db] INFO Database is already at OMERO5.4__0
01:56:21 + export LANG=en_US.UTF-8
01:56:21 + LANG=en_US.UTF-8
01:56:21 + export LANGUAGE=en_US:en
01:56:21 + LANGUAGE=en_US:en
01:56:21 + export LC_ALL=en_US.UTF-8
01:56:21 + LC_ALL=en_US.UTF-8
01:56:21 + BUILD_ID=DONT_KILL_ME
01:56:21 + omero admin start
01:56:29 No descriptor given. Using etc/grid/default.xml
01:56:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:56:41 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:56:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:56:41 Waiting on startup. Use CTRL-C to exit
01:56:41 + omero admin waitup
01:56:42 Waiting on startup. Use CTRL-C to exit
01:56:43 + omero admin diagnostics
01:56:45
01:56:45 ================================================================================
01:56:45 OMERO Diagnostics (admin)
01:56:45 ================================================================================
01:56:45
01:56:45 Commands: java -version 11.0.25 (/usr/bin/java)
01:56:45 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:56:45 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:56:45 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:56:45 Commands: psql --version 16.8 (/usr/bin/psql)
01:56:45 Commands: openssl version 3.2.24 (/usr/bin/openssl)
01:56:45
01:56:45 Component: OMERO.py 5.20.0.dev0
01:56:45 Component: OMERO.server 5.6.3-548-4b631c68af-ice36-b367
01:56:45
01:56:45 Server: icegridnode running
01:56:45 Server: Blitz-0 active (pid = 37292, enabled)
01:56:45 Server: Indexer-0 activating (enabled)
01:56:45 Server: OMERO.Glacier2 active (pid = 37321, enabled)
01:56:45 Server: OMERO.IceStorm active (pid = 37344, enabled)
01:56:45 Server: Processor-0 activating (enabled)
01:56:45 Server: Tables-0 activating (enabled)
01:56:45
01:56:45 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:56:45 Log files: Blitz-0.log 23.4 KB errors=0 warnings=1
01:56:45 Log files: DropBox.log n/a
01:56:45 Log files: FileServer.log n/a
01:56:45 Log files: Indexer-0.log 2.1 KB
01:56:45 Log files: MonitorServer.log n/a
01:56:45 Log files: Processor-0.log 592 B
01:56:45 Log files: Tables-0.log 842 B
01:56:45 Log files: TestDropBox.log n/a
01:56:45 Log files: master.err 25.6 KB
01:56:45 Log files: master.out 30.5 KB
01:56:45 Log files: Total size 0.08 MB
01:56:45
01:56:45
01:56:45 Environment:OMERO_HOME=(unset)
01:56:45 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:56:45 Environment:OMERO_NODE=(unset)
01:56:45 Environment:OMERO_MASTER=(unset)
01:56:45 Environment:OMERO_USERDIR=(unset)
01:56:45 Environment:OMERO_TMPDIR=(unset)
01:56:45 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:56:45 Environment:PYTHONPATH=(unset)
01:56:45 Environment:ICE_HOME=/opt/ice-3.6.5
01:56:45 Environment:LD_LIBRARY_PATH=(unset)
01:56:45 Environment:DYLD_LIBRARY_PATH=(unset)
01:56:45
01:56:45 OMERO SSL port:4064
01:56:45 OMERO TCP port:4063
01:56:45 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
01:56:45 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
01:56:45
01:56:45 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:56:45 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:56:45 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:56:45 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:56:45
01:56:45 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 31 March 2025 8aea6450d14d17ccf315cd9ecd1fe5280ce670d4
01:56:45 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 31 March 2025 8aea6450d14d17ccf315cd9ecd1fe5280ce670d4
01:56:45 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 31 March 2025 8aea6450d14d17ccf315cd9ecd1fe5280ce670d4
01:56:45 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 31 March 2025 35775ceea6d2647e71df6a022361d67bb205e3b0
01:56:45 Jar: lib/server/omero-blitz.jar jar 5.8.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-gateway.jar jar 5.10.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT
01:56:45 Jar: lib/server/omero-server.jar jar 5.7.3-SNAPSHOT
01:56:45 + deactivate
01:56:45 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:56:45 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:56:45 + export PATH
01:56:45 + unset _OLD_VIRTUAL_PATH
01:56:45 + '[' -n '' ']'
01:56:45 + hash -r
01:56:45 + '[' -n '' ']'
01:56:45 + unset VIRTUAL_ENV
01:56:45 + unset VIRTUAL_ENV_PROMPT
01:56:45 + '[' '!' '' = nondestructive ']'
01:56:45 + unset -f deactivate
01:56:45 Finished: SUCCESS
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