00:57:21 Started by upstream project "Trigger" build number 433
00:57:21 originally caused by:
00:57:21 Started by timer
00:57:21 Running as SYSTEM
00:57:21 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:57:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12409278322301314379.sh
00:57:21 + source /home/settings.env
00:57:21 ++ OMERO_DB_HOST=pg
00:57:21 ++ OMERO_DB_USER=postgres
00:57:21 ++ OMERO_DB_PASS=
00:57:21 ++ OMERO_ROOT_PASS=omero
00:57:21 ++ OMERO_DATA_DIR=/OMERO
00:57:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:57:21 + OMERO_DB_NAME=OMERO-server
00:57:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:57:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:57:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:57:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:57:21 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:57:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:57:21 ++ deactivate nondestructive
00:57:21 ++ '[' -n '' ']'
00:57:21 ++ '[' -n '' ']'
00:57:21 ++ hash -r
00:57:21 ++ '[' -n '' ']'
00:57:21 ++ unset VIRTUAL_ENV
00:57:21 ++ unset VIRTUAL_ENV_PROMPT
00:57:21 ++ '[' '!' nondestructive = nondestructive ']'
00:57:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:57:21 ++ export VIRTUAL_ENV
00:57:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:21 ++ export PATH
00:57:21 ++ '[' -n '' ']'
00:57:21 ++ '[' -z '' ']'
00:57:21 ++ _OLD_VIRTUAL_PS1=
00:57:21 ++ PS1='(.venv3) '
00:57:21 ++ export PS1
00:57:21 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:57:21 ++ export VIRTUAL_ENV_PROMPT
00:57:21 ++ hash -r
00:57:21 + omero admin stop
00:57:22 Waiting on shutdown. Use CTRL-C to exit
00:57:22 .+ sleep 5
00:57:37 + deactivate
00:57:37 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:57:37 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:37 + export PATH
00:57:37 + unset _OLD_VIRTUAL_PATH
00:57:37 + '[' -n '' ']'
00:57:37 + hash -r
00:57:37 + '[' -n '' ']'
00:57:37 + unset VIRTUAL_ENV
00:57:37 + unset VIRTUAL_ENV_PROMPT
00:57:37 + '[' '!' '' = nondestructive ']'
00:57:37 + unset -f deactivate
00:57:37 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:57:38 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:57:42 + '[' false = true ']'
00:57:42 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:57:42 Skipping PURGE_DATA:CleanDbAndRepo
00:57:42 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:57:44 Copied 1 artifact from "OMERO-build" build number 375
00:57:44 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 367
00:57:44 Copied 2 artifacts from "OMERO-build-build" build number 393
00:57:44 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1567071162417745919.sh
00:57:44 + source /home/settings.env
00:57:44 ++ OMERO_DB_HOST=pg
00:57:44 ++ OMERO_DB_USER=postgres
00:57:44 ++ OMERO_DB_PASS=
00:57:44 ++ OMERO_ROOT_PASS=omero
00:57:44 ++ OMERO_DATA_DIR=/OMERO
00:57:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:57:44 + OMERO_DB_NAME=OMERO-server
00:57:44 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:57:44 + mkdir -p /home/omero/omero-server-data
00:57:44 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:57:44 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:57:44 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:57:44 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:57:44 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:57:44 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:57:44 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:57:44 ++ ls OMERO.server-5.6.3-554-765bb833e1-ice36-b375.zip
00:57:44 + ZIP=OMERO.server-5.6.3-554-765bb833e1-ice36-b375.zip
00:57:44 + '[' '!' -z '' ']'
00:57:44 + DIST=OMERO.server-5.6.3-554-765bb833e1-ice36-b375
00:57:44 + unzip OMERO.server-5.6.3-554-765bb833e1-ice36-b375.zip
00:57:44 Archive: OMERO.server-5.6.3-554-765bb833e1-ice36-b375.zip
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/blitz/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/grid/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/profiles/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/error/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/grid/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/janelia/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/matplotlib/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/ncsa_paledit/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/seaborn/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/luts/wcif/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/analysis_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/annotation_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/export_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/figure_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/import_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/scripts/omero/util_scripts/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/server/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/share/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/share/licenses/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/misc/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__1/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__10/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__11/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__2/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__3/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__4/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__5/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__6/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__7/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__8/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3A__9/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3__4/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3__5/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3__6/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO3__7/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4.1__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4.2__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4.2__0/t/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4.3__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4.4__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO4__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.0__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.1__1/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.2__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.3__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__1/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__2/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__3/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/
00:57:44 creating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/var/
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/LICENSE.txt
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/backup.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/blitz/mail-senders.example
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/blitz/mail-server.example
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/build.properties
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/env.bat
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/env.sh
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/hibernate.properties
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/ice.config
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/logback-cli.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/logback-indexing-cli.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/logback-indexing.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/logback.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/mime.types
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/node1.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/node2.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/omero.properties
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/profiles/psql
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/rollover.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/Windows.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/error/maintainance.html
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/grid/README
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/grid/default.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/grid/templates.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/grid/windefault.xml
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/ice.config
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/internal.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/master.cfg
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/templates/robot.template
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/etc/testdropbox.config
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/history.rst
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/OMEZarrReader.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/activation.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aggdesigner-algorithm.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aircompressor.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/annotations.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/antlr.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aopalliance.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/avatica-core.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/avatica-metrics.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aws-java-sdk-core.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aws-java-sdk-kms.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/aws-java-sdk-s3.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/base.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-all.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-anim.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-awt-util.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-bridge.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-codec.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-constants.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-css.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-dom.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-ext.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-extension.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-gui-util.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-gvt.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-i18n.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-parser.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-rasterizer-ext.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-rasterizer.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-script.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-slideshow.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-squiggle-ext.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-squiggle.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-svg-dom.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-svgbrowser.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-svggen.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-svgpp.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-svgrasterizer.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-swing.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-transcoder.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-ttf2svg.jar
00:57:44 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/lib/client/batik-util.jar
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00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/psql-footer.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/psql-header.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/schema.sql
00:57:47 inflating: OMERO.server-5.6.3-554-765bb833e1-ice36-b375/sql/psql/OMERO5.4__0/views.sql
00:57:47 + rm -f OMERO.server-5.6.3-554-765bb833e1-ice36-b375.zip
00:57:47 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-554-765bb833e1-ice36-b375 /home/omero/workspace/OMERO-server/OMERO.server
00:57:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:57:47 ++ deactivate nondestructive
00:57:47 ++ '[' -n '' ']'
00:57:47 ++ '[' -n '' ']'
00:57:47 ++ hash -r
00:57:47 ++ '[' -n '' ']'
00:57:47 ++ unset VIRTUAL_ENV
00:57:47 ++ unset VIRTUAL_ENV_PROMPT
00:57:47 ++ '[' '!' nondestructive = nondestructive ']'
00:57:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:57:47 ++ export VIRTUAL_ENV
00:57:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:47 ++ export PATH
00:57:47 ++ '[' -n '' ']'
00:57:47 ++ '[' -z '' ']'
00:57:47 ++ _OLD_VIRTUAL_PS1=
00:57:47 ++ PS1='(.venv3) '
00:57:47 ++ export PS1
00:57:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:57:47 ++ export VIRTUAL_ENV_PROMPT
00:57:47 ++ hash -r
00:57:47 + pip install -U pip
00:57:47 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:57:47 Collecting pip
00:57:47 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
00:57:47 Installing collected packages: pip
00:57:47 Attempting uninstall: pip
00:57:47 Found existing installation: pip 22.3.1
00:57:47 Uninstalling pip-22.3.1:
00:57:47 Successfully uninstalled pip-22.3.1
00:57:48 Successfully installed pip-25.0.1
00:57:48 WARNING: There was an error checking the latest version of pip.
00:57:48 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:57:49 Collecting zeroc-ice==3.6.5
00:57:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:57:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.3 MB/s eta 0:00:00
00:57:51 Installing collected packages: zeroc-ice
00:57:52 Successfully installed zeroc-ice-3.6.5
00:57:52 + pip install markdown
00:57:52 Collecting markdown
00:57:52 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
00:57:52 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
00:57:52 Installing collected packages: markdown
00:57:52 Successfully installed markdown-3.7
00:57:53 + pip install reportlab
00:57:53 Collecting reportlab
00:57:53 Using cached reportlab-4.3.1-py3-none-any.whl.metadata (1.7 kB)
00:57:53 Collecting pillow>=9.0.0 (from reportlab)
00:57:53 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
00:57:53 Collecting chardet (from reportlab)
00:57:53 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
00:57:53 Using cached reportlab-4.3.1-py3-none-any.whl (1.9 MB)
00:57:53 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
00:57:53 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
00:57:53 Installing collected packages: pillow, chardet, reportlab
00:57:54 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.3.1
00:57:54 + pip install omego
00:57:55 Collecting omego
00:57:55 Using cached omego-0.7.0-py3-none-any.whl
00:57:55 Collecting future (from omego)
00:57:55 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:57:55 Collecting yaclifw>=0.1.1 (from omego)
00:57:55 Using cached yaclifw-0.2.0-py3-none-any.whl
00:57:55 Collecting six (from yaclifw>=0.1.1->omego)
00:57:55 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:57:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:57:55 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:57:55 Installing collected packages: six, future, yaclifw, omego
00:57:55 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:57:55 + pip install tables
00:57:56 Collecting tables
00:57:56 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:57:56 Collecting numpy>=1.20.0 (from tables)
00:57:56 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
00:57:56 Collecting numexpr>=2.6.2 (from tables)
00:57:56 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:57:56 Collecting packaging (from tables)
00:57:56 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
00:57:56 Collecting py-cpuinfo (from tables)
00:57:56 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:57:56 Collecting blosc2>=2.3.0 (from tables)
00:57:56 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
00:57:56 Collecting typing-extensions>=4.4.0 (from tables)
00:57:56 Using cached typing_extensions-4.13.1-py3-none-any.whl.metadata (3.0 kB)
00:57:56 Collecting ndindex (from blosc2>=2.3.0->tables)
00:57:56 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
00:57:56 Collecting msgpack (from blosc2>=2.3.0->tables)
00:57:56 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
00:57:56 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:57:56 Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB)
00:57:56 Collecting requests (from blosc2>=2.3.0->tables)
00:57:56 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
00:57:56 Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
00:57:56 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
00:57:57 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:57:57 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
00:57:57 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:57:57 Using cached urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB)
00:57:57 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:57:57 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
00:57:57 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:57:57 Using cached blosc2-3.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
00:57:57 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB)
00:57:57 Using cached numpy-2.2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:57:57 Using cached typing_extensions-4.13.1-py3-none-any.whl (45 kB)
00:57:57 Using cached packaging-24.2-py3-none-any.whl (65 kB)
00:57:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:57:57 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
00:57:57 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB)
00:57:57 Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB)
00:57:57 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:57:57 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
00:57:57 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
00:57:57 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:57:57 Using cached urllib3-2.3.0-py3-none-any.whl (128 kB)
00:57:57 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables
00:58:01 Successfully installed blosc2-3.2.1 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.4 packaging-24.2 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.1 urllib3-2.3.0
00:58:01 + pip install jinja2
00:58:02 Collecting jinja2
00:58:02 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:58:02 Collecting MarkupSafe>=2.0 (from jinja2)
00:58:02 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
00:58:02 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:58:02 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
00:58:02 Installing collected packages: MarkupSafe, jinja2
00:58:02 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
00:58:02 + pip install omero-py
00:58:02 Collecting omero-py
00:58:02 Using cached omero_py-5.19.8-py3-none-any.whl.metadata (6.5 kB)
00:58:02 Collecting urllib3<2 (from omero-py)
00:58:02 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:58:02 Collecting appdirs (from omero-py)
00:58:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:58:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:58:03 Collecting numpy<2 (from omero-py)
00:58:03 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
00:58:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.1.0)
00:58:03 Collecting PyYAML (from omero-py)
00:58:03 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:58:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:58:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3)
00:58:03 Collecting portalocker (from omero-py)
00:58:03 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
00:58:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1)
00:58:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
00:58:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31)
00:58:03 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
00:58:03 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
00:58:03 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:58:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:58:03 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:58:03 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:58:03 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, omero-py
00:58:03 Attempting uninstall: urllib3
00:58:03 Found existing installation: urllib3 2.3.0
00:58:03 Uninstalling urllib3-2.3.0:
00:58:03 Successfully uninstalled urllib3-2.3.0
00:58:03 Attempting uninstall: numpy
00:58:03 Found existing installation: numpy 2.2.4
00:58:03 Uninstalling numpy-2.2.4:
00:58:03 Successfully uninstalled numpy-2.2.4
00:58:09 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 urllib3-1.26.20
00:58:09 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:58:09 Collecting omero-metadata
00:58:09 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ah7wkb18/omero-metadata_169d78e540a54c20894a5f5c0e1751bc
00:58:09 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ah7wkb18/omero-metadata_169d78e540a54c20894a5f5c0e1751bc
00:58:10 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit edbc8adfd54b9b8d87e2cd1fa326ad7bec701f6e
00:58:10 Installing build dependencies: started
00:58:12 Installing build dependencies: finished with status 'done'
00:58:12 Getting requirements to build wheel: started
00:58:12 Getting requirements to build wheel: finished with status 'done'
00:58:12 Preparing metadata (pyproject.toml): started
00:58:12 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.19.8)
00:58:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
00:58:12 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:58:12 Collecting pandas (from omero-metadata)
00:58:12 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
00:58:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
00:58:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:58:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:58:12 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
00:58:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
00:58:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:58:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
00:58:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
00:58:12 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
00:58:12 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:58:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:58:12 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:58:12 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:58:12 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:58:12 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
00:58:12 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:58:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
00:58:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
00:58:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
00:58:12 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
00:58:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:58:12 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:58:12 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
00:58:12 Building wheels for collected packages: omero-metadata
00:58:12 Building wheel for omero-metadata (pyproject.toml): started
00:58:13 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:58:13 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39281 sha256=dc39e9afa3742ec915313856494c16b35394596e674e5d3cc04f70b5f3e10f5f
00:58:13 Stored in directory: /tmp/pip-ephem-wheel-cache-x829bw0z/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:58:13 Successfully built omero-metadata
00:58:13 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:58:18 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2
00:58:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:58:18 Collecting omero-cli-render
00:58:18 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-1irw7kmp/omero-cli-render_936a973afc0e43fea549c052301dfe73
00:58:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-1irw7kmp/omero-cli-render_936a973afc0e43fea549c052301dfe73
00:58:19 Running command git checkout -b merge_ci --track origin/merge_ci
00:58:19 Switched to a new branch 'merge_ci'
00:58:19 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:58:19 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c0634f7093169239829c822f0017581dbdb4d36b
00:58:19 Installing build dependencies: started
00:58:21 Installing build dependencies: finished with status 'done'
00:58:21 Getting requirements to build wheel: started
00:58:21 Getting requirements to build wheel: finished with status 'done'
00:58:21 Preparing metadata (pyproject.toml): started
00:58:21 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
00:58:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.19.8)
00:58:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
00:58:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:58:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:58:21 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
00:58:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
00:58:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:58:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
00:58:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
00:58:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
00:58:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
00:58:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
00:58:21 Building wheels for collected packages: omero-cli-render
00:58:21 Building wheel for omero-cli-render (pyproject.toml): started
00:58:21 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:58:21 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19592 sha256=63772fc4c58b02c4a108d074afd1181fbd31abf09ad562365570553aaac777d6
00:58:21 Stored in directory: /tmp/pip-ephem-wheel-cache-jaid3vcy/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:58:21 Successfully built omero-cli-render
00:58:21 Installing collected packages: omero-cli-render
00:58:21 Successfully installed omero-cli-render-0.8.2.dev0
00:58:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:58:22 Collecting omero-cli-duplicate
00:58:22 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vr_ihpkf/omero-cli-duplicate_9ef266750b7f42c1a1afe8fdd8ab7232
00:58:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vr_ihpkf/omero-cli-duplicate_9ef266750b7f42c1a1afe8fdd8ab7232
00:58:23 Running command git checkout -b merge_ci --track origin/merge_ci
00:58:23 Switched to a new branch 'merge_ci'
00:58:23 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:58:23 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e97deeab12c23b80fcdb5c529ea9958f878c8e50
00:58:23 Installing build dependencies: started
00:58:25 Installing build dependencies: finished with status 'done'
00:58:25 Getting requirements to build wheel: started
00:58:25 Getting requirements to build wheel: finished with status 'done'
00:58:25 Preparing metadata (pyproject.toml): started
00:58:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:25 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8)
00:58:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
00:58:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:58:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:58:25 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
00:58:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
00:58:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
00:58:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:58:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
00:58:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
00:58:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
00:58:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
00:58:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
00:58:25 Building wheels for collected packages: omero-cli-duplicate
00:58:25 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:58:25 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:58:25 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=7f8438c452921c36f1f491686a247d6c55ba856f1748f234132d2952b2dd1310
00:58:25 Stored in directory: /tmp/pip-ephem-wheel-cache-6g2s_9en/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:58:25 Successfully built omero-cli-duplicate
00:58:25 Installing collected packages: omero-cli-duplicate
00:58:25 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:58:26 + pip install omero-certificates
00:58:26 Collecting omero-certificates
00:58:26 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:58:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8)
00:58:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
00:58:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:58:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:58:26 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
00:58:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
00:58:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
00:58:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:58:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
00:58:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
00:58:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
00:58:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
00:58:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
00:58:26 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:58:26 Installing collected packages: omero-certificates
00:58:26 Successfully installed omero-certificates-0.4.0
00:58:26 + for x in *.tar.gz
00:58:26 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:58:27 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:58:27 Installing build dependencies: started
00:58:28 Installing build dependencies: finished with status 'done'
00:58:28 Getting requirements to build wheel: started
00:58:28 Getting requirements to build wheel: finished with status 'done'
00:58:28 Preparing metadata (pyproject.toml): started
00:58:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:28 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8)
00:58:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
00:58:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:58:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:58:28 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
00:58:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
00:58:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
00:58:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:58:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
00:58:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
00:58:28 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
00:58:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
00:58:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
00:58:28 Building wheels for collected packages: omero-dropbox
00:58:28 Building wheel for omero-dropbox (pyproject.toml): started
00:58:29 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:58:29 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=3d406c266591b3903d2b2fe2dfae504e06eda48e2a0667fa65fae9e6731f7219
00:58:29 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:58:29 Successfully built omero-dropbox
00:58:29 Installing collected packages: omero-dropbox
00:58:29 Successfully installed omero-dropbox-5.7.1.dev0
00:58:29 + for x in *.tar.gz
00:58:29 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:58:29 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:58:29 Installing build dependencies: started
00:58:31 Installing build dependencies: finished with status 'done'
00:58:31 Getting requirements to build wheel: started
00:58:31 Getting requirements to build wheel: finished with status 'done'
00:58:31 Preparing metadata (pyproject.toml): started
00:58:31 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:31 Building wheels for collected packages: omero_marshal
00:58:31 Building wheel for omero_marshal (pyproject.toml): started
00:58:32 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:58:32 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=ac52dccf268c34781946587c568c9d9cf8f078656559f4a4f7924d54ced16ec1
00:58:32 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
00:58:32 Successfully built omero_marshal
00:58:32 Installing collected packages: omero_marshal
00:58:32 Successfully installed omero_marshal-0.9.1.dev0
00:58:32 + for x in *.tar.gz
00:58:32 + pip install -U omero_py-5.20.0.dev0.tar.gz
00:58:32 Processing ./omero_py-5.20.0.dev0.tar.gz
00:58:33 Installing build dependencies: started
00:58:34 Installing build dependencies: finished with status 'done'
00:58:34 Getting requirements to build wheel: started
00:58:35 Getting requirements to build wheel: finished with status 'done'
00:58:35 Preparing metadata (pyproject.toml): started
00:58:36 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.20)
00:58:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.4.4)
00:58:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.0.0)
00:58:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (1.26.4)
00:58:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (11.1.0)
00:58:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (6.0.2)
00:58:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.6.5)
00:58:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (2.32.3)
00:58:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0.dev0) (3.1.1)
00:58:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.4.1)
00:58:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (3.10)
00:58:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0.dev0) (2025.1.31)
00:58:36 Building wheels for collected packages: omero-py
00:58:36 Building wheel for omero-py (pyproject.toml): started
00:58:37 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:58:37 Created wheel for omero-py: filename=omero_py-5.20.0.dev0-py3-none-any.whl size=2783248 sha256=d20e1ff8246851289c314eb8714544939a7f0dc181d1b4b6d21bf75b2005df09
00:58:37 Stored in directory: /home/omero/.cache/pip/wheels/5c/d3/f5/669c3cf10fa717cb3e978234d9c068a609ce43910a81d0cc7a
00:58:37 Successfully built omero-py
00:58:37 Installing collected packages: omero-py
00:58:37 Attempting uninstall: omero-py
00:58:37 Found existing installation: omero-py 5.19.8
00:58:37 Uninstalling omero-py-5.19.8:
00:58:37 Successfully uninstalled omero-py-5.19.8
00:58:39 Successfully installed omero-py-5.20.0.dev0
00:58:39 + for x in *.tar.gz
00:58:39 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
00:58:40 Processing ./omero_scripts-5.9.1.dev0.tar.gz
00:58:40 Installing build dependencies: started
00:58:41 Installing build dependencies: finished with status 'done'
00:58:41 Getting requirements to build wheel: started
00:58:41 Getting requirements to build wheel: finished with status 'done'
00:58:41 Preparing metadata (pyproject.toml): started
00:58:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:42 Building wheels for collected packages: omero-scripts
00:58:42 Building wheel for omero-scripts (pyproject.toml): started
00:58:42 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:58:42 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=d9bb3980f9763b69d468f18ff9a2281372e521a8b7876f41670feda246a84a58
00:58:42 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed
00:58:42 Successfully built omero-scripts
00:58:42 Installing collected packages: omero-scripts
00:58:42 Successfully installed omero-scripts-5.9.1.dev0
00:58:42 + for x in *.tar.gz
00:58:42 + pip install -U omero_web-5.29.1.dev0.tar.gz
00:58:42 Processing ./omero_web-5.29.1.dev0.tar.gz
00:58:43 Installing build dependencies: started
00:58:44 Installing build dependencies: finished with status 'done'
00:58:44 Getting requirements to build wheel: started
00:58:45 Getting requirements to build wheel: finished with status 'done'
00:58:45 Preparing metadata (pyproject.toml): started
00:58:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:45 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.0.dev0)
00:58:45 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
00:58:45 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
00:58:46 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
00:58:46 Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
00:58:46 Collecting django-pipeline (from omero-web==5.29.1.dev0)
00:58:46 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
00:58:46 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
00:58:46 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:58:46 Collecting django-csp (from omero-web==5.29.1.dev0)
00:58:46 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
00:58:46 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
00:58:46 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
00:58:46 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
00:58:46 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:58:46 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
00:58:46 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
00:58:46 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
00:58:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
00:58:46 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2)
00:58:46 Collecting importlib-resources (from omero-web==5.29.1.dev0)
00:58:46 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:58:47 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
00:58:47 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
00:58:47 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
00:58:47 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
00:58:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
00:58:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
00:58:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
00:58:47 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
00:58:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
00:58:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
00:58:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
00:58:47 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1)
00:58:47 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
00:58:47 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:58:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
00:58:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
00:58:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
00:58:47 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:58:47 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
00:58:47 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
00:58:47 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:58:47 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
00:58:47 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
00:58:47 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
00:58:47 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:58:47 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
00:58:47 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
00:58:47 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:58:47 Building wheels for collected packages: omero-web
00:58:47 Building wheel for omero-web (pyproject.toml): started
00:58:48 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:58:48 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=ccce1ef2c456a95f3f960fd41ae2cd5b16fdfbb9113ba5daaeadd4115b726b56
00:58:48 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a
00:58:48 Successfully built omero-web
00:58:48 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
00:58:51 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
00:58:51 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:58:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:58:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:58:51 --2025-04-08 00:58:51-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:58:51 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ...
00:58:51 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:58:51 HTTP request sent, awaiting response... 200 OK
00:58:51 Length: 121749 (119K) [text/plain]
00:58:51 Saving to: ‘Figure_To_Pdf.py’
00:58:51
00:58:51 0K .......... .......... .......... .......... .......... 42% 3.38M 0s
00:58:51 50K .......... .......... .......... .......... .......... 84% 5.05M 0s
00:58:51 100K .......... ........ 100% 76.8M=0.02s
00:58:51
00:58:51 2025-04-08 00:58:51 (4.77 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749]
00:58:51
00:58:51 + chmod 755 Figure_To_Pdf.py
00:58:51 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:58:51 + omero config set omero.db.name OMERO-server
00:58:53 + omero config set omero.db.host pg
00:58:54 + omero config set omero.db.user postgres
00:58:55 + omero config set omero.data.dir /home/omero/omero-server-data
00:58:56 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:58:58 + omero config set omero.db.poolsize 25
00:58:59 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:59:00 + omero config set omero.security.trustStorePassword changeit
00:59:01 + omero config set omero.mail.config true
00:59:03 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:59:04 + omero config set omero.mail.host smtp.dundee.ac.uk
00:59:05 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:59:06 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:59:07 + omero certificates
00:59:09 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
00:59:09 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:59:09 + '[' false = true ']'
00:59:09 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:59:09 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:59:09 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG dbcommand => upgrade
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG dbhost => localhost
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG dbname => OMERO-server
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG dbpass => omero
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG dbuser => omero
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG rootpass => omero
00:59:09 2025-04-08 00:59:09,398 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:59:09 2025-04-08 00:59:09,398 [omego.extern] INFO Executing : omero version
00:59:10 OMERO.py version:
00:59:10 OMERO.server version:
00:59:10 5.6.3-554-765bb833e1-ice36-b375
00:59:10 5.20.0.dev0
00:59:10 2025-04-08 00:59:10,704 [omego.extern] INFO Completed [1.305 s]
00:59:10 2025-04-08 00:59:10,704 [omego.extern] DEBUG Using omero CLI from omero
00:59:10 2025-04-08 00:59:10,704 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:59:10 2025-04-08 00:59:10,704 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:59:10 2025-04-08 00:59:10,704 [omego.extern] INFO Executing : omero config get --show-password
00:59:11 2025-04-08 00:59:11,933 [omego.extern] INFO Completed [1.229 s]
00:59:11 2025-04-08 00:59:11,933 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:59:11 2025-04-08 00:59:11,933 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:59:11 2025-04-08 00:59:11,939 [omego.extern] INFO Completed [0.006 s]
00:59:11 2025-04-08 00:59:11,939 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n'
00:59:11 2025-04-08 00:59:11,939 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8
00:59:11
00:59:11 2025-04-08 00:59:11,939 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:59:11 2025-04-08 00:59:11,939 [omego.extern] INFO Executing : omero config get --show-password
00:59:13 2025-04-08 00:59:13,159 [omego.extern] INFO Completed [1.221 s]
00:59:13 2025-04-08 00:59:13,160 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:59:13 2025-04-08 00:59:13,160 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:59:13 2025-04-08 00:59:13,169 [omego.extern] INFO Completed [0.009 s]
00:59:13 2025-04-08 00:59:13,169 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:59:13 2025-04-08 00:59:13,169 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:59:13 2025-04-08 00:59:13,169 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:59:13 2025-04-08 00:59:13,169 [omego.extern] INFO Executing : omero config get --show-password
00:59:14 2025-04-08 00:59:14,426 [omego.extern] INFO Completed [1.257 s]
00:59:14 2025-04-08 00:59:14,426 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:59:14 2025-04-08 00:59:14,426 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:59:14 2025-04-08 00:59:14,436 [omego.extern] INFO Completed [0.010 s]
00:59:14 2025-04-08 00:59:14,437 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:59:14 2025-04-08 00:59:14,437 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:59:14 2025-04-08 00:59:14,438 [ omego.db] INFO Database is already at OMERO5.4__0
00:59:14 + export LANG=en_US.UTF-8
00:59:14 + LANG=en_US.UTF-8
00:59:14 + export LANGUAGE=en_US:en
00:59:14 + LANGUAGE=en_US:en
00:59:14 + export LC_ALL=en_US.UTF-8
00:59:14 + LC_ALL=en_US.UTF-8
00:59:14 + BUILD_ID=DONT_KILL_ME
00:59:14 + omero admin start
00:59:19 No descriptor given. Using etc/grid/default.xml
00:59:30 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:59:30 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:59:30 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:59:30 Waiting on startup. Use CTRL-C to exit
00:59:30 + omero admin waitup
00:59:31 Waiting on startup. Use CTRL-C to exit
00:59:32 + omero admin diagnostics
00:59:33
00:59:33 ================================================================================
00:59:33 OMERO Diagnostics (admin)
00:59:33 ================================================================================
00:59:33
00:59:33 Commands: java -version 11.0.25 (/usr/bin/java)
00:59:33 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:59:33 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:59:33 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:59:33 Commands: psql --version 16.8 (/usr/bin/psql)
00:59:33 Commands: openssl version 3.2.24 (/usr/bin/openssl)
00:59:33
00:59:33 Component: OMERO.py 5.20.0.dev0
00:59:33 Component: OMERO.server 5.6.3-554-765bb833e1-ice36-b375
00:59:33
00:59:33 Server: icegridnode running
00:59:33 Server: Blitz-0 active (pid = 85764, enabled)
00:59:33 Server: Indexer-0 activating (enabled)
00:59:33 Server: OMERO.Glacier2 active (pid = 85794, enabled)
00:59:33 Server: OMERO.IceStorm active (pid = 85822, enabled)
00:59:33 Server: Processor-0 activating (enabled)
00:59:33 Server: Tables-0 activating (enabled)
00:59:33
00:59:33 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:59:33 Log files: Blitz-0.log 23.4 KB errors=0 warnings=1
00:59:33 Log files: DropBox.log n/a
00:59:33 Log files: FileServer.log n/a
00:59:33 Log files: Indexer-0.log 478 B
00:59:33 Log files: MonitorServer.log n/a
00:59:33 Log files: Processor-0.log 592 B
00:59:33 Log files: Tables-0.log 842 B
00:59:33 Log files: TestDropBox.log n/a
00:59:33 Log files: master.err 24.8 KB
00:59:33 Log files: master.out 30.5 KB
00:59:33 Log files: Total size 0.08 MB
00:59:33
00:59:33
00:59:33 Environment:OMERO_HOME=(unset)
00:59:33 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:59:33 Environment:OMERO_NODE=(unset)
00:59:33 Environment:OMERO_MASTER=(unset)
00:59:33 Environment:OMERO_USERDIR=(unset)
00:59:33 Environment:OMERO_TMPDIR=(unset)
00:59:33 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:33 Environment:PYTHONPATH=(unset)
00:59:33 Environment:ICE_HOME=/opt/ice-3.6.5
00:59:33 Environment:LD_LIBRARY_PATH=(unset)
00:59:33 Environment:DYLD_LIBRARY_PATH=(unset)
00:59:33
00:59:33 OMERO SSL port:4064
00:59:33 OMERO TCP port:4063
00:59:33 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:59:33 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:59:33
00:59:33 JVM settings: Blitz-${index} -Xmx7200m
00:59:33 JVM settings: Indexer-${index} -Xmx4800m
00:59:33 JVM settings: PixelData-${index} -Xmx7200m
00:59:33 JVM settings: Repository-${index} -Xmx4800m
00:59:33
00:59:33 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 8 April 2025 45abc5a3d8dde2f328682c2e143840db9ed92e1c
00:59:33 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 8 April 2025 45abc5a3d8dde2f328682c2e143840db9ed92e1c
00:59:33 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 8 April 2025 45abc5a3d8dde2f328682c2e143840db9ed92e1c
00:59:33 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 8 April 2025 50271c95f155a05aae7f0e314454577730ef7fde
00:59:33 Jar: lib/server/omero-blitz.jar jar 5.8.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-gateway.jar jar 5.10.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT
00:59:33 Jar: lib/server/omero-server.jar jar 5.7.3-SNAPSHOT
00:59:33 + deactivate
00:59:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:59:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:33 + export PATH
00:59:33 + unset _OLD_VIRTUAL_PATH
00:59:33 + '[' -n '' ']'
00:59:33 + hash -r
00:59:33 + '[' -n '' ']'
00:59:33 + unset VIRTUAL_ENV
00:59:33 + unset VIRTUAL_ENV_PROMPT
00:59:33 + '[' '!' '' = nondestructive ']'
00:59:33 + unset -f deactivate
00:59:33 Finished: SUCCESS
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