Console Output

01:12:07 Started by upstream project "Trigger" build number 446
01:12:07 originally caused by:
01:12:07  Started by timer
01:12:07 Running as SYSTEM
01:12:07 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:12:07 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5638465238259219555.sh
01:12:07 + source /home/settings.env
01:12:07 ++ OMERO_DB_HOST=pg
01:12:07 ++ OMERO_DB_USER=postgres
01:12:07 ++ OMERO_DB_PASS=
01:12:07 ++ OMERO_ROOT_PASS=omero
01:12:07 ++ OMERO_DATA_DIR=/OMERO
01:12:07 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:12:07 + OMERO_DB_NAME=OMERO-server
01:12:07 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:12:07 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:07 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:07 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:12:07 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:12:07 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:12:07 ++ deactivate nondestructive
01:12:07 ++ '[' -n '' ']'
01:12:07 ++ '[' -n '' ']'
01:12:07 ++ hash -r
01:12:07 ++ '[' -n '' ']'
01:12:07 ++ unset VIRTUAL_ENV
01:12:07 ++ unset VIRTUAL_ENV_PROMPT
01:12:07 ++ '[' '!' nondestructive = nondestructive ']'
01:12:07 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:12:07 ++ export VIRTUAL_ENV
01:12:07 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:07 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:07 ++ export PATH
01:12:07 ++ '[' -n '' ']'
01:12:07 ++ '[' -z '' ']'
01:12:07 ++ _OLD_VIRTUAL_PS1=
01:12:07 ++ PS1='(.venv3) '
01:12:07 ++ export PS1
01:12:07 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:12:07 ++ export VIRTUAL_ENV_PROMPT
01:12:07 ++ hash -r
01:12:07 + omero admin stop
01:12:08 Waiting on shutdown. Use CTRL-C to exit
01:12:08 .+ sleep 5
01:12:23 + deactivate
01:12:23 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:12:23 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:23 + export PATH
01:12:23 + unset _OLD_VIRTUAL_PATH
01:12:23 + '[' -n '' ']'
01:12:23 + hash -r
01:12:23 + '[' -n '' ']'
01:12:23 + unset VIRTUAL_ENV
01:12:23 + unset VIRTUAL_ENV_PROMPT
01:12:23 + '[' '!' '' = nondestructive ']'
01:12:23 + unset -f deactivate
01:12:23 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:12:24 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
01:12:28 + '[' false = true ']'
01:12:28 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:12:28 Skipping PURGE_DATA:CleanDbAndRepo
01:12:28 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:12:30 Copied 1 artifact from "OMERO-build" build number 387
01:12:30 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 379
01:12:30 Copied 2 artifacts from "OMERO-build-build" build number 404
01:12:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14035824286073038218.sh
01:12:30 + source /home/settings.env
01:12:30 ++ OMERO_DB_HOST=pg
01:12:30 ++ OMERO_DB_USER=postgres
01:12:30 ++ OMERO_DB_PASS=
01:12:30 ++ OMERO_ROOT_PASS=omero
01:12:30 ++ OMERO_DATA_DIR=/OMERO
01:12:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:12:30 + OMERO_DB_NAME=OMERO-server
01:12:30 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:12:30 + mkdir -p /home/omero/omero-server-data
01:12:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:12:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:30 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:30 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:30 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:30 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:30 ++ ls OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:12:30 + ZIP=OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:12:30 + '[' '!' -z '' ']'
01:12:30 + DIST=OMERO.server-5.6.3-552-9639368fdd-ice36-b387
01:12:30 + unzip OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:12:30 Archive:  OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/blitz/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/grid/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/profiles/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/error/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/grid/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/janelia/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/matplotlib/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/ncsa_paledit/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/seaborn/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/luts/wcif/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/analysis_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/annotation_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/export_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/figure_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/import_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/scripts/omero/util_scripts/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/server/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/share/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/share/licenses/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/misc/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__1/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__10/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__11/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__2/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__3/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__4/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__5/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__6/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__7/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__8/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3A__9/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3__4/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3__5/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3__6/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3__7/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.1__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.2__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.2__0/t/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.3__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.4__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.0__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.1__1/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.2__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__1/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__2/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__3/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/
01:12:30    creating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/var/
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/LICENSE.txt  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/backup.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/blitz/mail-senders.example  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/blitz/mail-server.example  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/build.properties  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/env.bat  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/env.sh  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/hibernate.properties  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/ice.config  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/logback-cli.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/logback-indexing-cli.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/logback-indexing.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/logback.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/mime.types  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/node1.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/node2.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/omero.properties  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/profiles/psql  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/rollover.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/Windows.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/error/maintainance.html  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/grid/README  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/grid/default.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/grid/templates.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/grid/windefault.xml  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/ice.config  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/internal.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/master.cfg  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/templates/robot.template  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/etc/testdropbox.config  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/history.rst  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/OMEZarrReader.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/activation.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aggdesigner-algorithm.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aircompressor.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/annotations.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/antlr.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aopalliance.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/avatica-core.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/avatica-metrics.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aws-java-sdk-core.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aws-java-sdk-kms.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/aws-java-sdk-s3.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/base.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-all.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-anim.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-awt-util.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-bridge.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-codec.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-constants.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-css.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-dom.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-ext.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-extension.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-gui-util.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-gvt.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-i18n.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-parser.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-rasterizer-ext.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-rasterizer.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-script.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-slideshow.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-squiggle-ext.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-squiggle.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-svg-dom.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-svgbrowser.jar  
01:12:30   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/lib/client/batik-svggen.jar  
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01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO3__7/OMERO3__6.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.1__0/OMERO4__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO4__0/OMERO3A__11.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/psql-footer.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/psql-header.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/schema.sql  
01:12:33   inflating: OMERO.server-5.6.3-552-9639368fdd-ice36-b387/sql/psql/OMERO5.4__0/views.sql  
01:12:33 + rm -f OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:12:33 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-552-9639368fdd-ice36-b387 /home/omero/workspace/OMERO-server/OMERO.server
01:12:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:12:33 ++ deactivate nondestructive
01:12:33 ++ '[' -n '' ']'
01:12:33 ++ '[' -n '' ']'
01:12:33 ++ hash -r
01:12:33 ++ '[' -n '' ']'
01:12:33 ++ unset VIRTUAL_ENV
01:12:33 ++ unset VIRTUAL_ENV_PROMPT
01:12:33 ++ '[' '!' nondestructive = nondestructive ']'
01:12:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:12:33 ++ export VIRTUAL_ENV
01:12:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:33 ++ export PATH
01:12:33 ++ '[' -n '' ']'
01:12:33 ++ '[' -z '' ']'
01:12:33 ++ _OLD_VIRTUAL_PS1=
01:12:33 ++ PS1='(.venv3) '
01:12:33 ++ export PS1
01:12:33 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:12:33 ++ export VIRTUAL_ENV_PROMPT
01:12:33 ++ hash -r
01:12:33 + pip install -U pip
01:12:33 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:12:33 Collecting pip
01:12:33   Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
01:12:33 Installing collected packages: pip
01:12:33   Attempting uninstall: pip
01:12:33     Found existing installation: pip 22.3.1
01:12:34     Uninstalling pip-22.3.1:
01:12:34       Successfully uninstalled pip-22.3.1
01:12:35 Successfully installed pip-25.0.1
01:12:35 WARNING: There was an error checking the latest version of pip.
01:12:35 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:12:35 Collecting zeroc-ice==3.6.5
01:12:36   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:12:39      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.6 MB/s eta 0:00:00
01:12:39 Installing collected packages: zeroc-ice
01:12:40 Successfully installed zeroc-ice-3.6.5
01:12:40 + pip install markdown
01:12:41 Collecting markdown
01:12:41   Using cached markdown-3.8-py3-none-any.whl.metadata (5.1 kB)
01:12:41 Using cached markdown-3.8-py3-none-any.whl (106 kB)
01:12:41 Installing collected packages: markdown
01:12:41 Successfully installed markdown-3.8
01:12:41 + pip install reportlab
01:12:41 Collecting reportlab
01:12:41   Using cached reportlab-4.4.0-py3-none-any.whl.metadata (1.8 kB)
01:12:42 Collecting pillow>=9.0.0 (from reportlab)
01:12:42   Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB)
01:12:42 Collecting chardet (from reportlab)
01:12:42   Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:12:42 Using cached reportlab-4.4.0-py3-none-any.whl (2.0 MB)
01:12:42 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
01:12:42 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:12:42 Installing collected packages: pillow, chardet, reportlab
01:12:43 Successfully installed chardet-5.2.0 pillow-11.2.1 reportlab-4.4.0
01:12:43 + pip install omego
01:12:43 Collecting omego
01:12:43   Using cached omego-0.7.0-py3-none-any.whl
01:12:43 Collecting future (from omego)
01:12:43   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:12:43 Collecting yaclifw>=0.1.1 (from omego)
01:12:43   Using cached yaclifw-0.2.0-py3-none-any.whl
01:12:43 Collecting six (from yaclifw>=0.1.1->omego)
01:12:43   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:12:43 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:12:43 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:12:43 Installing collected packages: six, future, yaclifw, omego
01:12:44 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
01:12:44 + pip install tables
01:12:44 Collecting tables
01:12:44   Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
01:12:45 Collecting numpy>=1.20.0 (from tables)
01:12:45   Downloading numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
01:12:45 Collecting numexpr>=2.6.2 (from tables)
01:12:45   Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
01:12:45 Collecting packaging (from tables)
01:12:45   Downloading packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
01:12:45 Collecting py-cpuinfo (from tables)
01:12:45   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:12:45 Collecting blosc2>=2.3.0 (from tables)
01:12:45   Using cached blosc2-3.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
01:12:45 Collecting typing-extensions>=4.4.0 (from tables)
01:12:45   Using cached typing_extensions-4.13.2-py3-none-any.whl.metadata (3.0 kB)
01:12:45 Collecting ndindex (from blosc2>=2.3.0->tables)
01:12:45   Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:12:45 Collecting msgpack (from blosc2>=2.3.0->tables)
01:12:45   Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:12:45 Collecting platformdirs (from blosc2>=2.3.0->tables)
01:12:45   Using cached platformdirs-4.3.7-py3-none-any.whl.metadata (11 kB)
01:12:45 Collecting requests (from blosc2>=2.3.0->tables)
01:12:45   Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:12:45 Collecting charset-normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
01:12:45   Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:12:45 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
01:12:45   Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:12:45 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
01:12:45   Using cached urllib3-2.4.0-py3-none-any.whl.metadata (6.5 kB)
01:12:45 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
01:12:45   Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
01:12:45 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:12:45 Using cached blosc2-3.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:12:45 Using cached numexpr-2.10.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (398 kB)
01:12:45 Downloading numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
01:12:46    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.4/16.4 MB 23.3 MB/s eta 0:00:00
01:12:46 Using cached typing_extensions-4.13.2-py3-none-any.whl (45 kB)
01:12:46 Downloading packaging-25.0-py3-none-any.whl (66 kB)
01:12:46 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:12:46 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
01:12:46 Using cached ndindex-1.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (506 kB)
01:12:46 Using cached platformdirs-4.3.7-py3-none-any.whl (18 kB)
01:12:46 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:12:46 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
01:12:46 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
01:12:46 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:12:46 Using cached urllib3-2.4.0-py3-none-any.whl (128 kB)
01:12:46 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset-normalizer, certifi, requests, numexpr, blosc2, tables
01:12:49 Successfully installed blosc2-3.3.0 certifi-2025.1.31 charset-normalizer-3.4.1 idna-3.10 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.2.5 packaging-25.0 platformdirs-4.3.7 py-cpuinfo-9.0.0 requests-2.32.3 tables-3.10.2 typing-extensions-4.13.2 urllib3-2.4.0
01:12:50 + pip install jinja2
01:12:50 Collecting jinja2
01:12:50   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:12:50 Collecting MarkupSafe>=2.0 (from jinja2)
01:12:50   Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:12:50 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:12:50 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
01:12:50 Installing collected packages: MarkupSafe, jinja2
01:12:50 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
01:12:50 + pip install omero-py
01:12:51 Collecting omero-py
01:12:51   Using cached omero_py-5.20.0-py3-none-any.whl.metadata (6.5 kB)
01:12:51 Collecting urllib3<2 (from omero-py)
01:12:51   Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:12:51 Collecting appdirs (from omero-py)
01:12:51   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:12:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
01:12:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.2.5)
01:12:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.2.1)
01:12:51 Collecting PyYAML (from omero-py)
01:12:51   Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:12:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:12:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.3)
01:12:51 Collecting portalocker (from omero-py)
01:12:51   Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:12:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.1)
01:12:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
01:12:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.1.31)
01:12:51 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
01:12:51 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:12:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:12:51 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:12:51 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:12:51 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py
01:12:51   Attempting uninstall: urllib3
01:12:51     Found existing installation: urllib3 2.4.0
01:12:51     Uninstalling urllib3-2.4.0:
01:12:51       Successfully uninstalled urllib3-2.4.0
01:12:53 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.20.0 portalocker-3.1.1 urllib3-1.26.20
01:12:53 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:12:53 Collecting omero-metadata
01:12:53   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-3jitixbe/omero-metadata_9a8d7cfd192745fcbf7622852b1edbe0
01:12:53   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-3jitixbe/omero-metadata_9a8d7cfd192745fcbf7622852b1edbe0
01:12:54   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 95d86b57c950c8002d5948f4357b694d8ce8b21b
01:12:54   Installing build dependencies: started
01:12:56   Installing build dependencies: finished with status 'done'
01:12:56   Getting requirements to build wheel: started
01:12:56   Getting requirements to build wheel: finished with status 'done'
01:12:56   Preparing metadata (pyproject.toml): started
01:12:56   Preparing metadata (pyproject.toml): finished with status 'done'
01:12:56 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.20.0)
01:12:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
01:12:56 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
01:12:56 Collecting pandas (from omero-metadata)
01:12:56   Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:12:56 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:12:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:12:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:12:56 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.2.5)
01:12:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.2.1)
01:12:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:12:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:12:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
01:12:56 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
01:12:56 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:12:56   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:12:56 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:12:56   Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
01:12:56 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:12:56   Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
01:12:56 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:12:56 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
01:12:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:12:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.1.31)
01:12:56 Using cached pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:12:56 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:12:56 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
01:12:56 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
01:12:57 Building wheels for collected packages: omero-metadata
01:12:57   Building wheel for omero-metadata (pyproject.toml): started
01:12:57   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:12:57   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39280 sha256=ade43a850573bc94d3d55d406d670fdabf49b70b3336693d137532a57fdc9e64
01:12:57   Stored in directory: /tmp/pip-ephem-wheel-cache-0r58rq_0/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
01:12:57 Successfully built omero-metadata
01:12:57 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:13:03 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.2
01:13:03 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:13:03 Collecting omero-cli-render
01:13:03   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-fjzytpf_/omero-cli-render_32e51b62b0d74be2ab6cf55da79f65ba
01:13:03   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-fjzytpf_/omero-cli-render_32e51b62b0d74be2ab6cf55da79f65ba
01:13:04   Running command git checkout -b merge_ci --track origin/merge_ci
01:13:05   Switched to a new branch 'merge_ci'
01:13:05   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:13:05   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c3bd53d284f0afb00c8e6189a9d4cb30bba4938d
01:13:05   Installing build dependencies: started
01:13:06   Installing build dependencies: finished with status 'done'
01:13:06   Getting requirements to build wheel: started
01:13:06   Getting requirements to build wheel: finished with status 'done'
01:13:06   Preparing metadata (pyproject.toml): started
01:13:06   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
01:13:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.20.0)
01:13:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:13:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:13:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:13:06 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.2.5)
01:13:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.2.1)
01:13:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:13:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:13:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
01:13:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
01:13:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:13:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.1.31)
01:13:06 Building wheels for collected packages: omero-cli-render
01:13:06   Building wheel for omero-cli-render (pyproject.toml): started
01:13:07   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:13:07   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19594 sha256=fee9a9766f345626f8e7deb52a3821aa627b066fc1dcb1d2cd8f6e1e227abde2
01:13:07   Stored in directory: /tmp/pip-ephem-wheel-cache-8_xb9kab/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
01:13:07 Successfully built omero-cli-render
01:13:07 Installing collected packages: omero-cli-render
01:13:07 Successfully installed omero-cli-render-0.8.2.dev0
01:13:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:13:07 Collecting omero-cli-duplicate
01:13:07   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-dblnlq7d/omero-cli-duplicate_4be10f512cc04cbb9082918c847b4a62
01:13:07   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-dblnlq7d/omero-cli-duplicate_4be10f512cc04cbb9082918c847b4a62
01:13:08   Running command git checkout -b merge_ci --track origin/merge_ci
01:13:08   Switched to a new branch 'merge_ci'
01:13:08   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:13:08   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit d2b05fe9942e71d6292b1d7f822c16f5b514be84
01:13:08   Installing build dependencies: started
01:13:10   Installing build dependencies: finished with status 'done'
01:13:10   Getting requirements to build wheel: started
01:13:10   Getting requirements to build wheel: finished with status 'done'
01:13:10   Preparing metadata (pyproject.toml): started
01:13:10   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:10 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.20.0)
01:13:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:13:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:13:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:13:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.2.5)
01:13:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.2.1)
01:13:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:13:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:13:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:13:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
01:13:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
01:13:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:13:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
01:13:10 Building wheels for collected packages: omero-cli-duplicate
01:13:10   Building wheel for omero-cli-duplicate (pyproject.toml): started
01:13:10   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:13:10   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=e3afc83f421c50721a025ec6435249d0b4850e6439939e812d2ed8323ae72abf
01:13:10   Stored in directory: /tmp/pip-ephem-wheel-cache-32a3a8bp/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
01:13:10 Successfully built omero-cli-duplicate
01:13:11 Installing collected packages: omero-cli-duplicate
01:13:11 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:13:11 + pip install omero-certificates
01:13:11 Collecting omero-certificates
01:13:11   Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
01:13:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.20.0)
01:13:11 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:13:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:13:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:13:11 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.2.5)
01:13:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.2.1)
01:13:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:13:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:13:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:13:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
01:13:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
01:13:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:13:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
01:13:11 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
01:13:11 Installing collected packages: omero-certificates
01:13:11 Successfully installed omero-certificates-0.4.0
01:13:11 + for x in *.tar.gz
01:13:11 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:13:12 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:13:12   Installing build dependencies: started
01:13:13   Installing build dependencies: finished with status 'done'
01:13:13   Getting requirements to build wheel: started
01:13:13   Getting requirements to build wheel: finished with status 'done'
01:13:13   Preparing metadata (pyproject.toml): started
01:13:14   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:14 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.20.0)
01:13:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:13:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:13:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:13:14 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.2.5)
01:13:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.2.1)
01:13:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:13:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:13:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:13:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
01:13:14 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
01:13:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:13:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
01:13:14 Building wheels for collected packages: omero-dropbox
01:13:14   Building wheel for omero-dropbox (pyproject.toml): started
01:13:14   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:13:14   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49139 sha256=603e163551fbc2dacf552045d69e22e6d1a75060a708c289a91ff150115d64be
01:13:14   Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
01:13:14 Successfully built omero-dropbox
01:13:14 Installing collected packages: omero-dropbox
01:13:14 Successfully installed omero-dropbox-5.7.1.dev0
01:13:14 + for x in *.tar.gz
01:13:14 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:13:14 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:13:15   Installing build dependencies: started
01:13:16   Installing build dependencies: finished with status 'done'
01:13:16   Getting requirements to build wheel: started
01:13:16   Getting requirements to build wheel: finished with status 'done'
01:13:16   Preparing metadata (pyproject.toml): started
01:13:16   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:16 Building wheels for collected packages: omero_marshal
01:13:16   Building wheel for omero_marshal (pyproject.toml): started
01:13:17   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:13:17   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=fa3fd1adee82d2dd78b0595c69d2a26e63920a459128b36e344b174c7f63d56a
01:13:17   Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
01:13:17 Successfully built omero_marshal
01:13:17 Installing collected packages: omero_marshal
01:13:17 Successfully installed omero_marshal-0.9.1.dev0
01:13:17 + for x in *.tar.gz
01:13:17 + pip install -U omero_py-5.20.1.dev0.tar.gz
01:13:17 Processing ./omero_py-5.20.1.dev0.tar.gz
01:13:18   Installing build dependencies: started
01:13:19   Installing build dependencies: finished with status 'done'
01:13:19   Getting requirements to build wheel: started
01:13:20   Getting requirements to build wheel: finished with status 'done'
01:13:20   Preparing metadata (pyproject.toml): started
01:13:20   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.26.20)
01:13:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.4.4)
01:13:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.0.0)
01:13:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.2.5)
01:13:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (11.2.1)
01:13:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (6.0.2)
01:13:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.6.5)
01:13:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.32.3)
01:13:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.1.1)
01:13:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.4.1)
01:13:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.10)
01:13:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (2025.1.31)
01:13:20 Building wheels for collected packages: omero-py
01:13:20   Building wheel for omero-py (pyproject.toml): started
01:13:21   Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:13:21   Created wheel for omero-py: filename=omero_py-5.20.1.dev0-py3-none-any.whl size=2783233 sha256=55fe8dfdf830541cf60db1632ea143692872a639959932e7d87373ce81d3f1b6
01:13:21   Stored in directory: /home/omero/.cache/pip/wheels/32/f0/8b/0c9b8cf4f8a22d20fdbdb6d870eee959c7bb16ef86f85fd19c
01:13:21 Successfully built omero-py
01:13:21 Installing collected packages: omero-py
01:13:21   Attempting uninstall: omero-py
01:13:21     Found existing installation: omero-py 5.20.0
01:13:21     Uninstalling omero-py-5.20.0:
01:13:21       Successfully uninstalled omero-py-5.20.0
01:13:23 Successfully installed omero-py-5.20.1.dev0
01:13:24 + for x in *.tar.gz
01:13:24 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
01:13:24 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:13:24   Installing build dependencies: started
01:13:25   Installing build dependencies: finished with status 'done'
01:13:25   Getting requirements to build wheel: started
01:13:26   Getting requirements to build wheel: finished with status 'done'
01:13:26   Preparing metadata (pyproject.toml): started
01:13:26   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:26 Building wheels for collected packages: omero-scripts
01:13:26   Building wheel for omero-scripts (pyproject.toml): started
01:13:26   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:13:26   Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136849 sha256=9566c66197207bf87800000b8e4bc7ea17c448c208e1faf7d1fea7b904a381f3
01:13:26   Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed
01:13:26 Successfully built omero-scripts
01:13:26 Installing collected packages: omero-scripts
01:13:26 Successfully installed omero-scripts-5.9.1.dev0
01:13:26 + for x in *.tar.gz
01:13:26 + pip install -U omero_web-5.29.1.dev0.tar.gz
01:13:27 Processing ./omero_web-5.29.1.dev0.tar.gz
01:13:27   Installing build dependencies: started
01:13:29   Installing build dependencies: finished with status 'done'
01:13:29   Getting requirements to build wheel: started
01:13:29   Getting requirements to build wheel: finished with status 'done'
01:13:29   Preparing metadata (pyproject.toml): started
01:13:29   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:29 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.1.dev0)
01:13:29 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
01:13:29   Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:13:29 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
01:13:29   Using cached Django-4.2.20-py3-none-any.whl.metadata (4.1 kB)
01:13:29 Collecting django-pipeline (from omero-web==5.29.1.dev0)
01:13:29   Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:13:30 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
01:13:30   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:13:30 Collecting django-csp (from omero-web==5.29.1.dev0)
01:13:30   Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
01:13:30 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
01:13:30   Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
01:13:30 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
01:13:30   Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:13:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
01:13:30 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.2.1)
01:13:30 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
01:13:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
01:13:30 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (25.0)
01:13:30 Collecting importlib-resources (from omero-web==5.29.1.dev0)
01:13:30   Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
01:13:30 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:13:30   Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:13:30 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:13:30   Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:13:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
01:13:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
01:13:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
01:13:30 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.2.5)
01:13:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
01:13:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
01:13:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
01:13:30 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1)
01:13:30 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
01:13:30   Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:13:30 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
01:13:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
01:13:30 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
01:13:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:13:30 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:13:30 Using cached Django-4.2.20-py3-none-any.whl (8.0 MB)
01:13:30 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:13:30 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
01:13:30 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
01:13:30 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:13:30 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
01:13:30 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:13:30 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:13:30 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:13:30 Building wheels for collected packages: omero-web
01:13:30   Building wheel for omero-web (pyproject.toml): started
01:13:31   Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:13:31   Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=7fbc064b2e4a1d45000fb6ef6f723d2f86330b33ac2c235157a42f4760088da3
01:13:31   Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a
01:13:33 Successfully built omero-web
01:13:33 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
01:13:36 Successfully installed Django-4.2.20 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
01:13:36 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:13:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:13:36 --2025-04-20 01:13:36--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:36 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ...
01:13:36 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
01:13:36 HTTP request sent, awaiting response... 200 OK
01:13:36 Length: 121749 (119K) [text/plain]
01:13:36 Saving to: ‘Figure_To_Pdf.py’
01:13:36 
01:13:36      0K .......... .......... .......... .......... .......... 42% 2.35M 0s
01:13:36     50K .......... .......... .......... .......... .......... 84% 15.8M 0s
01:13:36    100K .......... ........                                   100% 17.6M=0.02s
01:13:36 
01:13:36 2025-04-20 01:13:36 (4.66 MB/s) - ‘Figure_To_Pdf.py’ saved [121749/121749]
01:13:36 
01:13:36 + chmod 755 Figure_To_Pdf.py
01:13:36 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:13:36 + omero config set omero.db.name OMERO-server
01:13:38 + omero config set omero.db.host pg
01:13:39 + omero config set omero.db.user postgres
01:13:40 + omero config set omero.data.dir /home/omero/omero-server-data
01:13:41 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:13:42 + omero config set omero.db.poolsize 25
01:13:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:13:45 + omero config set omero.security.trustStorePassword changeit
01:13:46 + omero config set omero.mail.config true
01:13:47 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:13:48 + omero config set omero.mail.host smtp.dundee.ac.uk
01:13:49 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:13:50 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:13:52 + omero certificates
01:13:53 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
01:13:53 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:13:53 + '[' false = true ']'
01:13:53 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:13:53 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:13:53 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:13:53 2025-04-20 01:13:53,536 [    omego.db] DEBUG            dbcommand => upgrade
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG               dbhost => localhost
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG               dbname => OMERO-server
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG               dbpass => omero
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG               dbuser => omero
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG             rootpass => omero
01:13:53 2025-04-20 01:13:53,537 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:13:53 2025-04-20 01:13:53,537 [omego.extern] INFO  Executing : omero version
01:13:54 OMERO.py version:
01:13:54 OMERO.server version:
01:13:54 5.6.3-552-9639368fdd-ice36-b387
01:13:54 5.20.1.dev0
01:13:54 2025-04-20 01:13:54,777 [omego.extern] INFO  Completed [1.240 s]
01:13:54 2025-04-20 01:13:54,777 [omego.extern] DEBUG Using omero CLI from omero
01:13:54 2025-04-20 01:13:54,777 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:13:54 2025-04-20 01:13:54,777 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:13:54 2025-04-20 01:13:54,778 [omego.extern] INFO  Executing : omero config get --show-password
01:13:55 2025-04-20 01:13:55,965 [omego.extern] INFO  Completed [1.187 s]
01:13:55 2025-04-20 01:13:55,965 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:13:55 2025-04-20 01:13:55,965 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:13:55 2025-04-20 01:13:55,971 [omego.extern] INFO  Completed [0.006 s]
01:13:55 2025-04-20 01:13:55,971 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n'
01:13:55 2025-04-20 01:13:55,971 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.8
01:13:55 
01:13:55 2025-04-20 01:13:55,971 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:13:55 2025-04-20 01:13:55,971 [omego.extern] INFO  Executing : omero config get --show-password
01:13:57 2025-04-20 01:13:57,160 [omego.extern] INFO  Completed [1.189 s]
01:13:57 2025-04-20 01:13:57,161 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:13:57 2025-04-20 01:13:57,161 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:13:57 2025-04-20 01:13:57,170 [omego.extern] INFO  Completed [0.010 s]
01:13:57 2025-04-20 01:13:57,170 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
01:13:57 2025-04-20 01:13:57,171 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:13:57 2025-04-20 01:13:57,171 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:13:57 2025-04-20 01:13:57,171 [omego.extern] INFO  Executing : omero config get --show-password
01:13:58 2025-04-20 01:13:58,394 [omego.extern] INFO  Completed [1.223 s]
01:13:58 2025-04-20 01:13:58,394 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:13:58 2025-04-20 01:13:58,394 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:13:58 2025-04-20 01:13:58,405 [omego.extern] INFO  Completed [0.010 s]
01:13:58 2025-04-20 01:13:58,405 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:13:58 2025-04-20 01:13:58,405 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
01:13:58 2025-04-20 01:13:58,407 [    omego.db] INFO  Database is already at OMERO5.4__0
01:13:58 + export LANG=en_US.UTF-8
01:13:58 + LANG=en_US.UTF-8
01:13:58 + export LANGUAGE=en_US:en
01:13:58 + LANGUAGE=en_US:en
01:13:58 + export LC_ALL=en_US.UTF-8
01:13:58 + LC_ALL=en_US.UTF-8
01:13:58 + BUILD_ID=DONT_KILL_ME
01:13:58 + omero admin start
01:14:03 No descriptor given. Using etc/grid/default.xml
01:14:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:14:13 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:14:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:14:13 Waiting on startup. Use CTRL-C to exit
01:14:13 + omero admin waitup
01:14:14 Waiting on startup. Use CTRL-C to exit
01:14:14 + omero admin diagnostics
01:14:15 
01:14:15 ================================================================================
01:14:15 OMERO Diagnostics (admin)
01:14:15 ================================================================================
01:14:15         
01:14:15 Commands:   java -version                  11.0.25   (/usr/bin/java)
01:14:15 Commands:   python -V                      3.11.9    (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:14:15 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
01:14:15 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
01:14:15 Commands:   psql --version                 16.8      (/usr/bin/psql)
01:14:15 Commands:   openssl version                3.2.24    (/usr/bin/openssl)
01:14:15 
01:14:15 Component:  OMERO.py                       5.20.1.dev0
01:14:15 Component:  OMERO.server                   5.6.3-552-9639368fdd-ice36-b387
01:14:15 
01:14:15 Server:     icegridnode                    running
01:14:15 Server:     Blitz-0                        active (pid = 47508, enabled)
01:14:15 Server:     Indexer-0                      activating (enabled)
01:14:15 Server:     OMERO.Glacier2                 active (pid = 47538, enabled)
01:14:15 Server:     OMERO.IceStorm                 active (pid = 47566, enabled)
01:14:15 Server:     Processor-0                    active (pid = 47545, enabled)
01:14:16 Server:     Tables-0                       active (pid = 47561, enabled)
01:14:16 
01:14:16 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:14:16 Log files:  Blitz-0.log                    32.9 KB       errors=0    warnings=1   
01:14:16 Log files:  DropBox.log                    n/a
01:14:16 Log files:  FileServer.log                 n/a
01:14:16 Log files:  Indexer-0.log                  478 B        
01:14:16 Log files:  MonitorServer.log              n/a
01:14:16 Log files:  Processor-0.log                735 B        
01:14:16 Log files:  Tables-0.log                   961 B        
01:14:16 Log files:  TestDropBox.log                n/a
01:14:16 Log files:  master.err                     24.6 KB      
01:14:16 Log files:  master.out                     30.5 KB      
01:14:16 Log files:  Total size                     0.09 MB
01:14:16 
01:14:16 
01:14:16 Environment:OMERO_HOME=(unset)             
01:14:16 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
01:14:16 Environment:OMERO_NODE=(unset)             
01:14:16 Environment:OMERO_MASTER=(unset)           
01:14:16 Environment:OMERO_USERDIR=(unset)          
01:14:16 Environment:OMERO_TMPDIR=(unset)           
01:14:16 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
01:14:16 Environment:PYTHONPATH=(unset)             
01:14:16 Environment:ICE_HOME=/opt/ice-3.6.5        
01:14:16 Environment:LD_LIBRARY_PATH=(unset)        
01:14:16 Environment:DYLD_LIBRARY_PATH=(unset)      
01:14:16 
01:14:16 OMERO SSL port:4064                           
01:14:16 OMERO TCP port:4063                           
01:14:16 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
01:14:16 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
01:14:16 
01:14:16 JVM settings: Blitz-${index}                -Xmx7200m
01:14:16 JVM settings: Indexer-${index}              -Xmx4800m
01:14:16 JVM settings: PixelData-${index}            -Xmx7200m
01:14:16 JVM settings: Repository-${index}           -Xmx4800m
01:14:16 
01:14:16 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.2.0-SNAPSHOT	20 April 2025	6fe2b4820d30904ec1668ddc2c99cfc915132aa9
01:14:16 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.2.0-SNAPSHOT	20 April 2025	6fe2b4820d30904ec1668ddc2c99cfc915132aa9
01:14:16 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.2.0-SNAPSHOT	20 April 2025	6fe2b4820d30904ec1668ddc2c99cfc915132aa9
01:14:16 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.1-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/ome-common.jar      OME Common Java	6.0.26-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/ome-poi.jar         OME POI	5.3.10-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.0-SNAPSHOT	20 April 2025	65c9005d3909117177c4b1c6a3b8e2532d807fd3
01:14:16 Jar:        lib/server/omero-blitz.jar     jar	5.8.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-common.jar    jar	5.7.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-gateway.jar   jar	5.10.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-model.jar     jar	5.7.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-renderer.jar  jar	5.6.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-romio.jar     jar	5.8.3-SNAPSHOT		
01:14:16 Jar:        lib/server/omero-server.jar    jar	5.7.3-SNAPSHOT		
01:14:16 + deactivate
01:14:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:14:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:14:16 + export PATH
01:14:16 + unset _OLD_VIRTUAL_PATH
01:14:16 + '[' -n '' ']'
01:14:16 + hash -r
01:14:16 + '[' -n '' ']'
01:14:16 + unset VIRTUAL_ENV
01:14:16 + unset VIRTUAL_ENV_PROMPT
01:14:16 + '[' '!' '' = nondestructive ']'
01:14:16 + unset -f deactivate
01:14:16 Finished: SUCCESS