06:31:00 Started by upstream project "Trigger" build number 516
06:31:00 originally caused by:
06:31:00 Started by user devspace
06:31:00 Running as SYSTEM
06:31:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
06:31:00 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14006373733362711093.sh
06:31:00 + source /home/settings.env
06:31:00 ++ OMERO_DB_HOST=pg
06:31:00 ++ OMERO_DB_USER=postgres
06:31:00 ++ OMERO_DB_PASS=
06:31:00 ++ OMERO_ROOT_PASS=omero
06:31:00 ++ OMERO_DATA_DIR=/OMERO
06:31:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:31:00 + OMERO_DB_NAME=OMERO-server
06:31:00 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
06:31:00 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
06:31:00 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
06:31:00 + OMERO_DATA_DIR=/home/omero/omero-server-data
06:31:00 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
06:31:00 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
06:31:00 ++ deactivate nondestructive
06:31:00 ++ '[' -n '' ']'
06:31:00 ++ '[' -n '' ']'
06:31:00 ++ hash -r
06:31:00 ++ '[' -n '' ']'
06:31:00 ++ unset VIRTUAL_ENV
06:31:00 ++ unset VIRTUAL_ENV_PROMPT
06:31:00 ++ '[' '!' nondestructive = nondestructive ']'
06:31:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
06:31:00 ++ export VIRTUAL_ENV
06:31:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:31:00 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:31:00 ++ export PATH
06:31:00 ++ '[' -n '' ']'
06:31:00 ++ '[' -z '' ']'
06:31:00 ++ _OLD_VIRTUAL_PS1=
06:31:00 ++ PS1='(.venv3) '
06:31:00 ++ export PS1
06:31:00 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
06:31:00 ++ export VIRTUAL_ENV_PROMPT
06:31:00 ++ hash -r
06:31:00 + omero admin stop
06:31:02 Server not running
06:31:02 + echo not running
06:31:02 not running
06:31:02 + sleep 5
06:31:07 + deactivate
06:31:07 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
06:31:07 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:31:07 + export PATH
06:31:07 + unset _OLD_VIRTUAL_PATH
06:31:07 + '[' -n '' ']'
06:31:07 + hash -r
06:31:07 + '[' -n '' ']'
06:31:07 + unset VIRTUAL_ENV
06:31:07 + unset VIRTUAL_ENV_PROMPT
06:31:07 + '[' '!' '' = nondestructive ']'
06:31:07 + unset -f deactivate
06:31:07 + rm -rf /home/omero/workspace/OMERO-server/.venv3
06:31:08 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
06:31:12 + '[' false = true ']'
06:31:12 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
06:31:12 Skipping PURGE_DATA:CleanDbAndRepo
06:31:12 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.20.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
06:31:14 Copied 1 artifact from "OMERO-build" build number 440
06:31:14 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 433
06:31:14 Copied 2 artifacts from "OMERO-build-build" build number 461
06:31:14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10612790521216491789.sh
06:31:14 + source /home/settings.env
06:31:14 ++ OMERO_DB_HOST=pg
06:31:14 ++ OMERO_DB_USER=postgres
06:31:14 ++ OMERO_DB_PASS=
06:31:14 ++ OMERO_ROOT_PASS=omero
06:31:14 ++ OMERO_DATA_DIR=/OMERO
06:31:14 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:31:14 + OMERO_DB_NAME=OMERO-server
06:31:14 + OMERO_DATA_DIR=/home/omero/omero-server-data
06:31:14 + mkdir -p /home/omero/omero-server-data
06:31:14 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
06:31:14 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
06:31:14 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
06:31:14 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
06:31:14 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
06:31:14 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
06:31:14 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
06:31:14 ++ ls OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:31:14 + ZIP=OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:31:14 + '[' '!' -z '' ']'
06:31:14 + DIST=OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440
06:31:14 + unzip OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:31:14 Archive: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/grid/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/profiles/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/error/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/janelia/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/matplotlib/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/ncsa_paledit/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/seaborn/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/luts/wcif/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/analysis_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/annotation_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/export_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/figure_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/import_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/scripts/omero/util_scripts/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/server/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/share/licenses/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/misc/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__1/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__10/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__11/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__2/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__3/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__4/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__5/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__6/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__7/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__8/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3A__9/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__4/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__5/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__6/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO3__7/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.1__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.2__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.2__0/t/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.3__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4.4__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO4__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.0__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__1/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__2/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__3/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/
06:31:14 creating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/var/
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/LICENSE.txt
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/backup.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/mail-senders.example
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/blitz/mail-server.example
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/build.properties
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/env.bat
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/env.sh
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/hibernate.properties
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/ice.config
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-cli.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-indexing-cli.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback-indexing.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/logback.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/mime.types
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/node1.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/node2.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/omero.properties
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/profiles/psql
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/rollover.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/Windows.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/error/maintainance.html
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/README
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/default.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/templates.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/grid/windefault.xml
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/ice.config
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/internal.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/master.cfg
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/templates/robot.template
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/etc/testdropbox.config
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/history.rst
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/OMEZarrReader.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/accessors-smart.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/activation.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aggdesigner-algorithm.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aircompressor.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/antlr.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aopalliance.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/apiguardian-api.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/asm.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/avatica-core.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/avatica-metrics.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-core.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-kms.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/aws-java-sdk-s3.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/base.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-anim.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-awt-util.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-bridge.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-codec.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-constants.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-css.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-dom.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-ext.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-gvt.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-i18n.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-parser.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-script.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-shared-resources.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-svg-dom.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-svggen.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-transcoder.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-util.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/batik-xml.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/btm.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/calcite-core.jar
06:31:14 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/lib/client/calcite-linq4j.jar
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06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/psql-footer.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/psql-header.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/schema.sql
06:31:16 inflating: OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440/sql/psql/OMERO5.4__0/views.sql
06:31:16 + rm -f OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:31:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440 /home/omero/workspace/OMERO-server/OMERO.server
06:31:16 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server/ https://artifacts.glencoesoftware.com:443/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar
06:31:16 --2025-06-12 06:31:16-- https://artifacts.glencoesoftware.com/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar
06:31:16 Resolving artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)... 67.205.169.144, 2604:a880:400:d0::19b7:6001
06:31:16 Connecting to artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)|67.205.169.144|:443... connected.
06:31:17 HTTP request sent, awaiting response... 200 OK
06:31:17 Length: 26159 (26K) [application/java-archive]
06:31:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’
06:31:17
06:31:17 0K .......... .......... ..... 100% 82.6M=0s
06:31:17
06:31:17 2025-06-12 06:31:17 (82.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’ saved [26159/26159]
06:31:17
06:31:17 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
06:31:17 --2025-06-12 06:31:17-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
06:31:17 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
06:31:17 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
06:31:17 HTTP request sent, awaiting response... 200 OK
06:31:17 Length: 889211 (868K) [application/java-archive]
06:31:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
06:31:17
06:31:17 0K .......... .......... .......... .......... .......... 5% 3.91M 0s
06:31:17 50K .......... .......... .......... .......... .......... 11% 5.93M 0s
06:31:17 100K .......... .......... .......... .......... .......... 17% 21.7M 0s
06:31:17 150K .......... .......... .......... .......... .......... 23% 26.4M 0s
06:31:17 200K .......... .......... .......... .......... .......... 28% 6.97M 0s
06:31:17 250K .......... .......... .......... .......... .......... 34% 62.8M 0s
06:31:17 300K .......... .......... .......... .......... .......... 40% 25.8M 0s
06:31:17 350K .......... .......... .......... .......... .......... 46% 94.9M 0s
06:31:17 400K .......... .......... .......... .......... .......... 51% 28.1M 0s
06:31:17 450K .......... .......... .......... .......... .......... 57% 10.3M 0s
06:31:17 500K .......... .......... .......... .......... .......... 63% 20.8M 0s
06:31:17 550K .......... .......... .......... .......... .......... 69% 155M 0s
06:31:17 600K .......... .......... .......... .......... .......... 74% 30.7M 0s
06:31:17 650K .......... .......... .......... .......... .......... 80% 26.4M 0s
06:31:17 700K .......... .......... .......... .......... .......... 86% 9.26M 0s
06:31:17 750K .......... .......... .......... .......... .......... 92% 32.0M 0s
06:31:17 800K .......... .......... .......... .......... .......... 97% 115M 0s
06:31:17 850K .......... ........ 100% 13.9M=0.06s
06:31:17
06:31:17 2025-06-12 06:31:17 (15.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
06:31:17
06:31:17 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
06:31:17 --2025-06-12 06:31:17-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
06:31:18 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
06:31:18 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
06:31:18 HTTP request sent, awaiting response... 200 OK
06:31:18 Length: 73309 (72K) [application/java-archive]
06:31:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
06:31:18
06:31:18 0K .......... .......... .......... .......... .......... 69% 3.80M 0s
06:31:18 50K .......... .......... . 100% 22.9M=0.01s
06:31:18
06:31:18 2025-06-12 06:31:18 (5.08 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
06:31:18
06:31:18 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
06:31:18 --2025-06-12 06:31:18-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
06:31:18 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
06:31:18 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
06:31:18 HTTP request sent, awaiting response... 200 OK
06:31:18 Length: 63303 (62K) [application/java-archive]
06:31:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
06:31:18
06:31:18 0K .......... .......... .......... .......... .......... 80% 4.26M 0s
06:31:18 50K .......... . 100% 11.9M=0.01s
06:31:18
06:31:18 2025-06-12 06:31:18 (4.85 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
06:31:18
06:31:18 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
06:31:18 --2025-06-12 06:31:18-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
06:31:18 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
06:31:18 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
06:31:18 HTTP request sent, awaiting response... 200 OK
06:31:18 Length: 1271272 (1.2M) [application/java-archive]
06:31:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
06:31:18
06:31:18 0K .......... .......... .......... .......... .......... 4% 4.21M 0s
06:31:18 50K .......... .......... .......... .......... .......... 8% 5.31M 0s
06:31:18 100K .......... .......... .......... .......... .......... 12% 21.5M 0s
06:31:18 150K .......... .......... .......... .......... .......... 16% 25.7M 0s
06:31:18 200K .......... .......... .......... .......... .......... 20% 7.88M 0s
06:31:18 250K .......... .......... .......... .......... .......... 24% 33.2M 0s
06:31:18 300K .......... .......... .......... .......... .......... 28% 27.6M 0s
06:31:18 350K .......... .......... .......... .......... .......... 32% 86.3M 0s
06:31:18 400K .......... .......... .......... .......... .......... 36% 23.5M 0s
06:31:18 450K .......... .......... .......... .......... .......... 40% 10.7M 0s
06:31:18 500K .......... .......... .......... .......... .......... 44% 21.8M 0s
06:31:18 550K .......... .......... .......... .......... .......... 48% 118M 0s
06:31:18 600K .......... .......... .......... .......... .......... 52% 33.5M 0s
06:31:18 650K .......... .......... .......... .......... .......... 56% 24.4M 0s
06:31:18 700K .......... .......... .......... .......... .......... 60% 9.23M 0s
06:31:18 750K .......... .......... .......... .......... .......... 64% 35.7M 0s
06:31:18 800K .......... .......... .......... .......... .......... 68% 145M 0s
06:31:18 850K .......... .......... .......... .......... .......... 72% 28.0M 0s
06:31:18 900K .......... .......... .......... .......... .......... 76% 26.7M 0s
06:31:18 950K .......... .......... .......... .......... .......... 80% 9.36M 0s
06:31:18 1000K .......... .......... .......... .......... .......... 84% 155M 0s
06:31:18 1050K .......... .......... .......... .......... .......... 88% 36.1M 0s
06:31:18 1100K .......... .......... .......... .......... .......... 92% 27.3M 0s
06:31:18 1150K .......... .......... .......... .......... .......... 96% 8.50M 0s
06:31:18 1200K .......... .......... .......... .......... . 100% 178M=0.07s
06:31:18
06:31:18 2025-06-12 06:31:18 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
06:31:18
06:31:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
06:31:18 ++ deactivate nondestructive
06:31:18 ++ '[' -n '' ']'
06:31:18 ++ '[' -n '' ']'
06:31:18 ++ hash -r
06:31:18 ++ '[' -n '' ']'
06:31:18 ++ unset VIRTUAL_ENV
06:31:18 ++ unset VIRTUAL_ENV_PROMPT
06:31:18 ++ '[' '!' nondestructive = nondestructive ']'
06:31:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
06:31:18 ++ export VIRTUAL_ENV
06:31:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:31:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:31:18 ++ export PATH
06:31:18 ++ '[' -n '' ']'
06:31:18 ++ '[' -z '' ']'
06:31:18 ++ _OLD_VIRTUAL_PS1=
06:31:18 ++ PS1='(.venv3) '
06:31:18 ++ export PS1
06:31:18 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
06:31:18 ++ export VIRTUAL_ENV_PROMPT
06:31:18 ++ hash -r
06:31:18 + pip install -U pip
06:31:19 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
06:31:19 Collecting pip
06:31:19 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
06:31:19 Installing collected packages: pip
06:31:19 Attempting uninstall: pip
06:31:19 Found existing installation: pip 22.3.1
06:31:19 Uninstalling pip-22.3.1:
06:31:19 Successfully uninstalled pip-22.3.1
06:31:20 Successfully installed pip-25.1.1
06:31:20 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
06:31:21 Collecting zeroc-ice==3.6.5
06:31:21 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
06:31:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 17.8 MB/s eta 0:00:00
06:31:24 Installing collected packages: zeroc-ice
06:31:25 Successfully installed zeroc-ice-3.6.5
06:31:25 + pip install markdown
06:31:25 Collecting markdown
06:31:25 Using cached markdown-3.8-py3-none-any.whl.metadata (5.1 kB)
06:31:25 Using cached markdown-3.8-py3-none-any.whl (106 kB)
06:31:25 Installing collected packages: markdown
06:31:25 Successfully installed markdown-3.8
06:31:25 + pip install reportlab
06:31:26 Collecting reportlab
06:31:26 Using cached reportlab-4.4.1-py3-none-any.whl.metadata (1.8 kB)
06:31:26 Collecting pillow>=9.0.0 (from reportlab)
06:31:26 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB)
06:31:26 Collecting chardet (from reportlab)
06:31:26 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
06:31:26 Using cached reportlab-4.4.1-py3-none-any.whl (2.0 MB)
06:31:26 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
06:31:26 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
06:31:26 Installing collected packages: pillow, chardet, reportlab
06:31:27
06:31:27 Successfully installed chardet-5.2.0 pillow-11.2.1 reportlab-4.4.1
06:31:27 + pip install pyarrow
06:31:27 Collecting pyarrow
06:31:27 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
06:31:27 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.3 MB)
06:31:28 Installing collected packages: pyarrow
06:31:29 Successfully installed pyarrow-20.0.0
06:31:29 + pip install omego
06:31:30 Collecting omego
06:31:30 Using cached omego-0.7.0-py3-none-any.whl
06:31:30 Collecting future (from omego)
06:31:30 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
06:31:30 Collecting yaclifw>=0.1.1 (from omego)
06:31:30 Using cached yaclifw-0.2.0-py3-none-any.whl
06:31:30 Collecting six (from yaclifw>=0.1.1->omego)
06:31:30 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
06:31:30 Using cached future-1.0.0-py3-none-any.whl (491 kB)
06:31:30 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
06:31:30 Installing collected packages: six, future, yaclifw, omego
06:31:30
06:31:30 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
06:31:30 + pip install tables
06:31:30 Collecting tables
06:31:30 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
06:31:31 Collecting numpy>=1.20.0 (from tables)
06:31:31 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
06:31:31 Collecting numexpr>=2.6.2 (from tables)
06:31:31 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
06:31:31 Collecting packaging (from tables)
06:31:31 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
06:31:31 Collecting py-cpuinfo (from tables)
06:31:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
06:31:31 Collecting blosc2>=2.3.0 (from tables)
06:31:31 Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
06:31:31 Collecting typing-extensions>=4.4.0 (from tables)
06:31:31 Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB)
06:31:31 Collecting ndindex (from blosc2>=2.3.0->tables)
06:31:31 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
06:31:31 Collecting msgpack (from blosc2>=2.3.0->tables)
06:31:31 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
06:31:31 Collecting platformdirs (from blosc2>=2.3.0->tables)
06:31:31 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
06:31:31 Collecting requests (from blosc2>=2.3.0->tables)
06:31:31 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
06:31:31 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
06:31:31 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
06:31:31 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
06:31:31 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
06:31:31 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
06:31:31 Using cached urllib3-2.4.0-py3-none-any.whl.metadata (6.5 kB)
06:31:31 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
06:31:31 Using cached certifi-2025.4.26-py3-none-any.whl.metadata (2.5 kB)
06:31:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
06:31:31 Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
06:31:31 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
06:31:31 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
06:31:31 Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB)
06:31:31 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
06:31:31 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
06:31:31 Using cached packaging-25.0-py3-none-any.whl (66 kB)
06:31:31 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
06:31:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
06:31:31 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
06:31:31 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
06:31:31 Using cached idna-3.10-py3-none-any.whl (70 kB)
06:31:31 Using cached urllib3-2.4.0-py3-none-any.whl (128 kB)
06:31:31 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
06:31:31 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
06:31:37
06:31:37 Successfully installed blosc2-3.3.4 certifi-2025.4.26 charset_normalizer-3.4.2 idna-3.10 msgpack-1.1.0 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.0 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.0 urllib3-2.4.0
06:31:37 + pip install jinja2
06:31:38 Collecting jinja2
06:31:38 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
06:31:38 Collecting MarkupSafe>=2.0 (from jinja2)
06:31:38 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
06:31:38 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
06:31:38 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
06:31:38 Installing collected packages: MarkupSafe, jinja2
06:31:39
06:31:39 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
06:31:39 + pip install omero-py
06:31:40 Collecting omero-py
06:31:40 Using cached omero_py-5.20.0-py3-none-any.whl.metadata (6.5 kB)
06:31:40 Collecting urllib3<2 (from omero-py)
06:31:40 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
06:31:40 Collecting appdirs (from omero-py)
06:31:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
06:31:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
06:31:40 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.0)
06:31:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.2.1)
06:31:40 Collecting PyYAML (from omero-py)
06:31:40 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
06:31:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
06:31:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
06:31:40 Collecting portalocker (from omero-py)
06:31:40 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
06:31:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
06:31:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
06:31:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.4.26)
06:31:40 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
06:31:40 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
06:31:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
06:31:40 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
06:31:40 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
06:31:40 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py
06:31:40 Attempting uninstall: urllib3
06:31:40 Found existing installation: urllib3 2.4.0
06:31:40 Uninstalling urllib3-2.4.0:
06:31:40 Successfully uninstalled urllib3-2.4.0
06:31:42
06:31:42 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.20.0 portalocker-3.1.1 urllib3-1.26.20
06:31:42 + pip install git+https://github.com/dominikl/omero-cli-zarr.git@extinfo#egg=omero-cli-zarr
06:31:42 Collecting omero-cli-zarr
06:31:42 Cloning https://github.com/dominikl/omero-cli-zarr.git (to revision extinfo) to /tmp/pip-install-yclbrz9e/omero-cli-zarr_b5c51e1f5e5641fe82ae1497631944f4
06:31:42 Running command git clone --filter=blob:none --quiet https://github.com/dominikl/omero-cli-zarr.git /tmp/pip-install-yclbrz9e/omero-cli-zarr_b5c51e1f5e5641fe82ae1497631944f4
06:31:43 Running command git checkout -b extinfo --track origin/extinfo
06:31:44 Switched to a new branch 'extinfo'
06:31:44 branch 'extinfo' set up to track 'origin/extinfo'.
06:31:44 Resolved https://github.com/dominikl/omero-cli-zarr.git to commit 38b38f9e1ebaab0a72ed370fc9378d86f2d9b2e8
06:31:44 Installing build dependencies: started
06:31:44 Installing build dependencies: finished with status 'done'
06:31:44 Getting requirements to build wheel: started
06:31:45 Getting requirements to build wheel: finished with status 'done'
06:31:45 Installing backend dependencies: started
06:31:47 Installing backend dependencies: finished with status 'done'
06:31:47 Preparing metadata (pyproject.toml): started
06:31:48 Preparing metadata (pyproject.toml): finished with status 'done'
06:31:48 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.20.0)
06:31:48 Collecting ome-zarr>=0.5.0 (from omero-cli-zarr)
06:31:48 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
06:31:48 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.3.0)
06:31:48 Collecting dask (from ome-zarr>=0.5.0->omero-cli-zarr)
06:31:48 Using cached dask-2025.5.1-py3-none-any.whl.metadata (3.8 kB)
06:31:48 Collecting zarr<3,>=2.8.1 (from ome-zarr>=0.5.0->omero-cli-zarr)
06:31:48 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
06:31:48 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:48 Using cached fsspec-2025.5.1-py3-none-any.whl.metadata (11 kB)
06:31:49 Collecting aiohttp<4 (from ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached aiohttp-3.12.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB)
06:31:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.32.4)
06:31:49 Collecting scikit-image (from ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
06:31:49 Collecting toolz (from ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)
06:31:49 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
06:31:49 Collecting aiosignal>=1.1.2 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached aiosignal-1.3.2-py2.py3-none-any.whl.metadata (3.8 kB)
06:31:49 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB)
06:31:49 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
06:31:49 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached multidict-6.4.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.3 kB)
06:31:49 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:49 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
06:31:50 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB)
06:31:50 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) (3.10)
06:31:50 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached asciitree-0.3.3-py3-none-any.whl
06:31:50 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)
06:31:50 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
06:31:50 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB)
06:31:50 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
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06:31:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.26.20)
06:31:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
06:31:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
06:31:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (11.2.1)
06:31:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.2)
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06:31:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.1.1)
06:31:50 Collecting click>=8.1 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached click-8.2.1-py3-none-any.whl.metadata (2.5 kB)
06:31:50 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB)
06:31:50 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr>=0.5.0->omero-cli-zarr) (25.0)
06:31:50 Collecting partd>=1.4.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
06:31:50 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB)
06:31:50 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
06:31:50 Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
06:31:50 Collecting wrapt<2,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
06:31:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (3.4.2)
06:31:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (2025.4.26)
06:31:50 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached aiobotocore-2.22.0-py3-none-any.whl.metadata (24 kB)
06:31:50 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:50 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
06:31:51 Collecting botocore<1.37.4,>=1.37.2 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached botocore-1.37.3-py3-none-any.whl.metadata (5.7 kB)
06:31:51 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
06:31:51 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
06:31:51 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) (1.17.0)
06:31:51 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached scipy-1.15.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
06:31:51 Collecting networkx>=3.0 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB)
06:31:51 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB)
06:31:51 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Downloading tifffile-2025.6.11-py3-none-any.whl.metadata (32 kB)
06:31:51 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
06:31:51 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
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06:31:51 Using cached click-8.2.1-py3-none-any.whl (102 kB)
06:31:51 Using cached cloudpickle-3.1.1-py3-none-any.whl (20 kB)
06:31:51 Using cached importlib_metadata-8.7.0-py3-none-any.whl (27 kB)
06:31:51 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
06:31:51 Using cached toolz-1.0.0-py3-none-any.whl (56 kB)
06:31:51 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
06:31:51 Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB)
06:31:51 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
06:31:51 Using cached fasteners-0.19-py3-none-any.whl (18 kB)
06:31:51 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
06:31:51 Using cached s3fs-2025.5.1-py3-none-any.whl (30 kB)
06:31:51 Using cached aiobotocore-2.22.0-py3-none-any.whl (78 kB)
06:31:51 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB)
06:31:51 Using cached botocore-1.37.3-py3-none-any.whl (13.3 MB)
06:31:51 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
06:31:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
06:31:51 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB)
06:31:51 Using cached imageio-2.37.0-py3-none-any.whl (315 kB)
06:31:51 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
06:31:51 Using cached networkx-3.5-py3-none-any.whl (2.0 MB)
06:31:51 Using cached scipy-1.15.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (37.7 MB)
06:31:51 Downloading tifffile-2025.6.11-py3-none-any.whl (230 kB)
06:31:52 Building wheels for collected packages: omero-cli-zarr
06:31:52 Building wheel for omero-cli-zarr (pyproject.toml): started
06:31:52 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
06:31:52 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.0.2.dev452+g38b38f9-py3-none-any.whl size=31066 sha256=b1d87e0c9ad60276dfdad217b4b826913df5966e3defe606fa847c8caf1b4c4b
06:31:52 Stored in directory: /tmp/pip-ephem-wheel-cache-h1f330uw/wheels/dd/b9/0c/0415f7fe907b9498563db54fc83efe934b62c0a5e710ef7b23
06:31:52 Successfully built omero-cli-zarr
06:31:52 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
06:32:02
06:32:02 Successfully installed aiobotocore-2.22.0 aiohappyeyeballs-2.6.1 aiohttp-3.12.12 aioitertools-0.12.0 aiosignal-1.3.2 asciitree-0.3.3 attrs-25.3.0 botocore-1.37.3 click-8.2.1 cloudpickle-3.1.1 dask-2025.5.1 deprecated-1.2.18 fasteners-0.19 frozenlist-1.7.0 fsspec-2025.5.1 imageio-2.37.0 importlib_metadata-8.7.0 jmespath-1.0.1 lazy-loader-0.4 locket-1.0.0 multidict-6.4.4 networkx-3.5 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.0.2.dev452+g38b38f9 partd-1.4.2 propcache-0.3.2 python-dateutil-2.9.0.post0 s3fs-2025.5.1 scikit-image-0.25.2 scipy-1.15.3 tifffile-2025.6.11 toolz-1.0.0 wrapt-1.17.2 yarl-1.20.1 zarr-2.18.7 zipp-3.23.0
06:32:02 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
06:32:02 Collecting omero-metadata
06:32:02 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-knbf5a5q/omero-metadata_a1b541d90a5144d3b0ccda56818d5832
06:32:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-knbf5a5q/omero-metadata_a1b541d90a5144d3b0ccda56818d5832
06:32:03 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit f60a2e6544d3bc7ea6208c1438e2ee8501057687
06:32:03 Installing build dependencies: started
06:32:04 Installing build dependencies: finished with status 'done'
06:32:04 Getting requirements to build wheel: started
06:32:04 Getting requirements to build wheel: finished with status 'done'
06:32:04 Preparing metadata (pyproject.toml): started
06:32:05 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.20.0)
06:32:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
06:32:05 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
06:32:05 Collecting pandas (from omero-metadata)
06:32:05 Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB)
06:32:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
06:32:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
06:32:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
06:32:05 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.0)
06:32:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.2.1)
06:32:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
06:32:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4)
06:32:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
06:32:05 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
06:32:05 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
06:32:05 Collecting pytz>=2020.1 (from pandas->omero-metadata)
06:32:05 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
06:32:05 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
06:32:05 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
06:32:05 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
06:32:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2)
06:32:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
06:32:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.4.26)
06:32:05 Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
06:32:05 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
06:32:05 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
06:32:05 Building wheels for collected packages: omero-metadata
06:32:05 Building wheel for omero-metadata (pyproject.toml): started
06:32:05 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
06:32:05 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=43abb46e6ed8abe11040f23e3725057d31a51c51f93d920693814c87988d1853
06:32:05 Stored in directory: /tmp/pip-ephem-wheel-cache-la9ufs0i/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
06:32:05 Successfully built omero-metadata
06:32:05 Installing collected packages: pytz, tzdata, pandas, omero-metadata
06:32:10
06:32:10 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.0 pytz-2025.2 tzdata-2025.2
06:32:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
06:32:11 Collecting omero-cli-render
06:32:11 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-_aux8vjo/omero-cli-render_035cbf99a9104a388e7d0c611533f5a7
06:32:11 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-_aux8vjo/omero-cli-render_035cbf99a9104a388e7d0c611533f5a7
06:32:11 Running command git checkout -b merge_ci --track origin/merge_ci
06:32:12 Switched to a new branch 'merge_ci'
06:32:12 branch 'merge_ci' set up to track 'origin/merge_ci'.
06:32:12 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 5a717264c80abc43e120d96a3b36527a6b2bfc7a
06:32:12 Installing build dependencies: started
06:32:13 Installing build dependencies: finished with status 'done'
06:32:13 Getting requirements to build wheel: started
06:32:13 Getting requirements to build wheel: finished with status 'done'
06:32:13 Preparing metadata (pyproject.toml): started
06:32:13 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
06:32:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.20.0)
06:32:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
06:32:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
06:32:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
06:32:13 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.0)
06:32:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.2.1)
06:32:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
06:32:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4)
06:32:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
06:32:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2)
06:32:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
06:32:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.4.26)
06:32:13 Building wheels for collected packages: omero-cli-render
06:32:13 Building wheel for omero-cli-render (pyproject.toml): started
06:32:14 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
06:32:14 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=d04c0501283ec86fa26d13febf652a8d26de0d895b6b5d56bbffeccddc28e851
06:32:14 Stored in directory: /tmp/pip-ephem-wheel-cache-adrv85wg/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
06:32:14 Successfully built omero-cli-render
06:32:14 Installing collected packages: omero-cli-render
06:32:14 Successfully installed omero-cli-render-0.8.2.dev0
06:32:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
06:32:14 Collecting omero-cli-duplicate
06:32:14 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-celvs4iu/omero-cli-duplicate_b13eee8540a04e0cb285f1509d3c6e70
06:32:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-celvs4iu/omero-cli-duplicate_b13eee8540a04e0cb285f1509d3c6e70
06:32:15 Running command git checkout -b merge_ci --track origin/merge_ci
06:32:15 Switched to a new branch 'merge_ci'
06:32:15 branch 'merge_ci' set up to track 'origin/merge_ci'.
06:32:15 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1ff656cf74fdde2517399e245b593b21e75dc361
06:32:15 Installing build dependencies: started
06:32:16 Installing build dependencies: finished with status 'done'
06:32:16 Getting requirements to build wheel: started
06:32:16 Getting requirements to build wheel: finished with status 'done'
06:32:16 Preparing metadata (pyproject.toml): started
06:32:17 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:17 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.20.0)
06:32:17 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
06:32:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
06:32:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
06:32:17 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.0)
06:32:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.2.1)
06:32:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
06:32:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
06:32:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
06:32:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
06:32:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
06:32:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
06:32:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.4.26)
06:32:17 Building wheels for collected packages: omero-cli-duplicate
06:32:17 Building wheel for omero-cli-duplicate (pyproject.toml): started
06:32:17 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
06:32:17 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=9518a5cb653164d840c633fe162afaacdf013b810056b78c952b498bc1700be1
06:32:17 Stored in directory: /tmp/pip-ephem-wheel-cache-67c2sngp/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
06:32:17 Successfully built omero-cli-duplicate
06:32:17 Installing collected packages: omero-cli-duplicate
06:32:17 Successfully installed omero-cli-duplicate-0.4.1.dev0
06:32:17 + pip install omero-certificates
06:32:18 Collecting omero-certificates
06:32:18 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
06:32:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.20.0)
06:32:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
06:32:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
06:32:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
06:32:18 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.0)
06:32:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.2.1)
06:32:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
06:32:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
06:32:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
06:32:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
06:32:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
06:32:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
06:32:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.4.26)
06:32:18 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
06:32:18 Installing collected packages: omero-certificates
06:32:18 Successfully installed omero-certificates-0.4.0
06:32:18 + for x in *.tar.gz
06:32:18 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
06:32:18 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
06:32:18 Installing build dependencies: started
06:32:19 Installing build dependencies: finished with status 'done'
06:32:19 Getting requirements to build wheel: started
06:32:19 Getting requirements to build wheel: finished with status 'done'
06:32:19 Preparing metadata (pyproject.toml): started
06:32:20 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:20 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.20.0)
06:32:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
06:32:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
06:32:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
06:32:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.0)
06:32:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.2.1)
06:32:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
06:32:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
06:32:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
06:32:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
06:32:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
06:32:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
06:32:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.4.26)
06:32:20 Building wheels for collected packages: omero-dropbox
06:32:20 Building wheel for omero-dropbox (pyproject.toml): started
06:32:20 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
06:32:20 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=8e1409ff224eb41eda25599f4372a30cc9ddaca7dae865faadc7943c7a3b0009
06:32:20 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
06:32:20 Successfully built omero-dropbox
06:32:20 Installing collected packages: omero-dropbox
06:32:20 Successfully installed omero-dropbox-5.7.1.dev0
06:32:20 + for x in *.tar.gz
06:32:20 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
06:32:20 Processing ./omero_marshal-0.9.1.dev0.tar.gz
06:32:21 Installing build dependencies: started
06:32:21 Installing build dependencies: finished with status 'done'
06:32:21 Getting requirements to build wheel: started
06:32:22 Getting requirements to build wheel: finished with status 'done'
06:32:22 Preparing metadata (pyproject.toml): started
06:32:22 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:22 Building wheels for collected packages: omero_marshal
06:32:22 Building wheel for omero_marshal (pyproject.toml): started
06:32:22 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
06:32:22 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=251ddda5829945d6e0c4421c8d0c337e7bf430d93a4ef94f3281c0af3794a8a3
06:32:22 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
06:32:22 Successfully built omero_marshal
06:32:23 Installing collected packages: omero_marshal
06:32:23 Successfully installed omero_marshal-0.9.1.dev0
06:32:23 + for x in *.tar.gz
06:32:23 + pip install -U omero_py-5.20.1.dev0.tar.gz
06:32:23 Processing ./omero_py-5.20.1.dev0.tar.gz
06:32:23 Installing build dependencies: started
06:32:24 Installing build dependencies: finished with status 'done'
06:32:24 Getting requirements to build wheel: started
06:32:25 Getting requirements to build wheel: finished with status 'done'
06:32:25 Preparing metadata (pyproject.toml): started
06:32:25 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.26.20)
06:32:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.4.4)
06:32:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.0.0)
06:32:25 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.3.0)
06:32:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (11.2.1)
06:32:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (6.0.2)
06:32:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.6.5)
06:32:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.32.4)
06:32:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.1.1)
06:32:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.4.2)
06:32:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.10)
06:32:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (2025.4.26)
06:32:25 Building wheels for collected packages: omero-py
06:32:25 Building wheel for omero-py (pyproject.toml): started
06:32:26 Building wheel for omero-py (pyproject.toml): finished with status 'done'
06:32:26 Created wheel for omero-py: filename=omero_py-5.20.1.dev0-py3-none-any.whl size=2783496 sha256=cf592627c762ed3b16c02506814a686136f110b1f71a6a5e82c90da8eee07469
06:32:26 Stored in directory: /home/omero/.cache/pip/wheels/32/f0/8b/0c9b8cf4f8a22d20fdbdb6d870eee959c7bb16ef86f85fd19c
06:32:26 Successfully built omero-py
06:32:26 Installing collected packages: omero-py
06:32:26 Attempting uninstall: omero-py
06:32:26 Found existing installation: omero-py 5.20.0
06:32:26 Uninstalling omero-py-5.20.0:
06:32:27 Successfully uninstalled omero-py-5.20.0
06:32:29 Successfully installed omero-py-5.20.1.dev0
06:32:29 + for x in *.tar.gz
06:32:29 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
06:32:29 Processing ./omero_scripts-5.9.1.dev0.tar.gz
06:32:29 Installing build dependencies: started
06:32:30 Installing build dependencies: finished with status 'done'
06:32:30 Getting requirements to build wheel: started
06:32:31 Getting requirements to build wheel: finished with status 'done'
06:32:31 Preparing metadata (pyproject.toml): started
06:32:31 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:31 Building wheels for collected packages: omero-scripts
06:32:31 Building wheel for omero-scripts (pyproject.toml): started
06:32:31 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
06:32:31 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136847 sha256=f929f0e5ff26fd516f58e45d8f7a63071ef50624ddc41f55bb20cc35f97fc2c5
06:32:31 Stored in directory: /home/omero/.cache/pip/wheels/5d/64/64/66c19773daf66dee2b16f9ebd49fde08680f277d4fff67beed
06:32:31 Successfully built omero-scripts
06:32:31 Installing collected packages: omero-scripts
06:32:31 Successfully installed omero-scripts-5.9.1.dev0
06:32:31 + for x in *.tar.gz
06:32:31 + pip install -U omero_web-5.29.1.dev0.tar.gz
06:32:32 Processing ./omero_web-5.29.1.dev0.tar.gz
06:32:32 Installing build dependencies: started
06:32:33 Installing build dependencies: finished with status 'done'
06:32:33 Getting requirements to build wheel: started
06:32:33 Getting requirements to build wheel: finished with status 'done'
06:32:33 Preparing metadata (pyproject.toml): started
06:32:34 Preparing metadata (pyproject.toml): finished with status 'done'
06:32:34 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.1.dev0)
06:32:34 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
06:32:34 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
06:32:34 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
06:32:34 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
06:32:34 Collecting django-pipeline (from omero-web==5.29.1.dev0)
06:32:34 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
06:32:34 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
06:32:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
06:32:34 Collecting django-csp (from omero-web==5.29.1.dev0)
06:32:34 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
06:32:34 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
06:32:34 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
06:32:34 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
06:32:34 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
06:32:34 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
06:32:34 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.2.1)
06:32:34 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
06:32:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
06:32:34 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (25.0)
06:32:34 Collecting importlib-resources (from omero-web==5.29.1.dev0)
06:32:34 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
06:32:34 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
06:32:34 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
06:32:34 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
06:32:34 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
06:32:34 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
06:32:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
06:32:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
06:32:34 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.3.0)
06:32:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
06:32:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
06:32:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.4)
06:32:34 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (65.5.1)
06:32:34 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
06:32:34 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
06:32:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.2)
06:32:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
06:32:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.4.26)
06:32:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
06:32:34 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
06:32:34 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
06:32:34 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
06:32:34 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
06:32:34 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
06:32:34 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
06:32:34 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
06:32:34 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
06:32:34 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
06:32:34 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
06:32:34 Building wheels for collected packages: omero-web
06:32:34 Building wheel for omero-web (pyproject.toml): started
06:32:35 Building wheel for omero-web (pyproject.toml): finished with status 'done'
06:32:36 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817925 sha256=3cc7bb61ac7273fee86fda9d982fb6f0fdaecb40da2bec02950ed225da3bb5a0
06:32:36 Stored in directory: /home/omero/.cache/pip/wheels/b6/72/73/a29488e9ae7a2242fcfdc532a2c6f9884a34cc378eb261962a
06:32:36 Successfully built omero-web
06:32:36 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
06:32:39
06:32:39 Successfully installed Django-4.2.23 asgiref-3.8.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
06:32:39 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
06:32:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
06:32:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
06:32:39 --2025-06-12 06:32:39-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
06:32:39 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ...
06:32:39 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
06:32:39 HTTP request sent, awaiting response... 200 OK
06:32:39 Length: 122144 (119K) [text/plain]
06:32:39 Saving to: ‘Figure_To_Pdf.py’
06:32:39
06:32:39 0K .......... .......... .......... .......... .......... 41% 3.90M 0s
06:32:39 50K .......... .......... .......... .......... .......... 83% 12.7M 0s
06:32:39 100K .......... ......... 100% 4.37M=0.02s
06:32:39
06:32:39 2025-06-12 06:32:39 (5.63 MB/s) - ‘Figure_To_Pdf.py’ saved [122144/122144]
06:32:39
06:32:39 + chmod 755 Figure_To_Pdf.py
06:32:39 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
06:32:39 + omero config set omero.db.name OMERO-server
06:32:41 + omero config set omero.db.host pg
06:32:42 + omero config set omero.db.user postgres
06:32:44 + omero config set omero.data.dir /home/omero/omero-server-data
06:32:46 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
06:32:48 + omero config set omero.db.poolsize 25
06:32:50 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
06:32:51 + omero config set omero.security.trustStorePassword changeit
06:32:53 + omero config set omero.mail.config true
06:32:55 + omero config set omero.mail.from qa@openmicroscopy.org.uk
06:32:56 + omero config set omero.mail.host smtp.dundee.ac.uk
06:32:58 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
06:33:00 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
06:33:01 + omero certificates
06:33:03 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
06:33:03 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
06:33:03 + '[' false = true ']'
06:33:03 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
06:33:03 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
06:33:03 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbcommand => upgrade
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbhost => localhost
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbname => OMERO-server
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbpass => omero
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG dbuser => omero
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG rootpass => omero
06:33:03 2025-06-12 06:33:03,767 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
06:33:03 2025-06-12 06:33:03,767 [omego.extern] INFO Executing : omero version
06:33:05 OMERO.py version:
06:33:05 OMERO.server version:
06:33:05 5.6.3-567-1b63fb50f9-ice36-b440
06:33:05 5.20.1.dev0
06:33:05 2025-06-12 06:33:05,621 [omego.extern] INFO Completed [1.854 s]
06:33:05 2025-06-12 06:33:05,621 [omego.extern] DEBUG Using omero CLI from omero
06:33:05 2025-06-12 06:33:05,621 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
06:33:05 2025-06-12 06:33:05,621 [omego.extern] INFO Running [current environment]: omero config get --show-password
06:33:05 2025-06-12 06:33:05,621 [omego.extern] INFO Executing : omero config get --show-password
06:33:07 2025-06-12 06:33:07,302 [omego.extern] INFO Completed [1.680 s]
06:33:07 2025-06-12 06:33:07,302 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
06:33:07 2025-06-12 06:33:07,302 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
06:33:07 2025-06-12 06:33:07,308 [omego.extern] INFO Completed [0.006 s]
06:33:07 2025-06-12 06:33:07,308 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.8\n'
06:33:07 2025-06-12 06:33:07,308 [ omego.db] INFO psql version: psql (PostgreSQL) 16.8
06:33:07
06:33:07 2025-06-12 06:33:07,308 [omego.extern] INFO Running [current environment]: omero config get --show-password
06:33:07 2025-06-12 06:33:07,308 [omego.extern] INFO Executing : omero config get --show-password
06:33:09 2025-06-12 06:33:09,075 [omego.extern] INFO Completed [1.767 s]
06:33:09 2025-06-12 06:33:09,075 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
06:33:09 2025-06-12 06:33:09,076 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
06:33:09 2025-06-12 06:33:09,086 [omego.extern] INFO Completed [0.010 s]
06:33:09 2025-06-12 06:33:09,086 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
06:33:09 2025-06-12 06:33:09,086 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
06:33:09 2025-06-12 06:33:09,086 [omego.extern] INFO Running [current environment]: omero config get --show-password
06:33:09 2025-06-12 06:33:09,086 [omego.extern] INFO Executing : omero config get --show-password
06:33:10 2025-06-12 06:33:10,786 [omego.extern] INFO Completed [1.700 s]
06:33:10 2025-06-12 06:33:10,786 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
06:33:10 2025-06-12 06:33:10,787 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
06:33:10 2025-06-12 06:33:10,798 [omego.extern] INFO Completed [0.011 s]
06:33:10 2025-06-12 06:33:10,798 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
06:33:10 2025-06-12 06:33:10,798 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
06:33:10 2025-06-12 06:33:10,800 [ omego.db] INFO Database is already at OMERO5.4__0
06:33:10 + export LANG=en_US.UTF-8
06:33:10 + LANG=en_US.UTF-8
06:33:10 + export LANGUAGE=en_US:en
06:33:10 + LANGUAGE=en_US:en
06:33:10 + export LC_ALL=en_US.UTF-8
06:33:10 + LC_ALL=en_US.UTF-8
06:33:10 + BUILD_ID=DONT_KILL_ME
06:33:10 + omero admin start
06:33:16 WARNING: lock files in /home/omero/omero-server-data
06:33:16 ----------------------------------------
06:33:16 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock
06:33:16 ----------------------------------------
06:33:16
06:33:16 You may want to stop all server processes and remove
06:33:16 these files manually. Lock files can remain after an
06:33:16 abrupt server outage and are especially frequent on
06:33:16 remotely mounted filesystems like NFS.
06:33:16
06:33:16 No descriptor given. Using etc/grid/default.xml
06:33:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
06:33:24 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
06:33:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
06:33:24 Waiting on startup. Use CTRL-C to exit
06:33:24 + omero admin waitup
06:33:26 Waiting on startup. Use CTRL-C to exit
06:33:26 + omero admin diagnostics
06:33:28
06:33:28 ================================================================================
06:33:28 OMERO Diagnostics (admin)
06:33:28 ================================================================================
06:33:28
06:33:28 Commands: java -version 11.0.25 (/usr/bin/java)
06:33:28 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
06:33:28 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
06:33:28 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
06:33:28 Commands: psql --version 16.8 (/usr/bin/psql)
06:33:28 Commands: openssl version 3.2.24 (/usr/bin/openssl)
06:33:28
06:33:28 Component: OMERO.py 5.20.1.dev0
06:33:28 Component: OMERO.server 5.6.3-567-1b63fb50f9-ice36-b440
06:33:28
06:33:28 Server: icegridnode running
06:33:28 Server: Blitz-0 active (pid = 4035, enabled)
06:33:28 Server: Indexer-0 activating (enabled)
06:33:28 Server: OMERO.Glacier2 active (pid = 4067, enabled)
06:33:28 Server: OMERO.IceStorm active (pid = 4091, enabled)
06:33:28 Server: Processor-0 active (pid = 4094, enabled)
06:33:28 Server: Tables-0 active (pid = 4075, enabled)
06:33:28
06:33:28 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
06:33:28 Log files: Blitz-0.log 33.6 KB errors=0 warnings=1
06:33:28 Log files: DropBox.log n/a
06:33:28 Log files: FileServer.log n/a
06:33:28 Log files: Indexer-0.log 358 B
06:33:28 Log files: MonitorServer.log n/a
06:33:28 Log files: Processor-0.log 735 B
06:33:28 Log files: Tables-0.log 961 B
06:33:28 Log files: TestDropBox.log n/a
06:33:28 Log files: master.err empty
06:33:28 Log files: master.out 30.5 KB
06:33:28 Log files: Total size 0.07 MB
06:33:28
06:33:28
06:33:28 Environment:OMERO_HOME=(unset)
06:33:28 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
06:33:28 Environment:OMERO_NODE=(unset)
06:33:28 Environment:OMERO_MASTER=(unset)
06:33:28 Environment:OMERO_USERDIR=(unset)
06:33:28 Environment:OMERO_TMPDIR=(unset)
06:33:28 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:33:28 Environment:PYTHONPATH=(unset)
06:33:28 Environment:ICE_HOME=/opt/ice-3.6.5
06:33:28 Environment:LD_LIBRARY_PATH=(unset)
06:33:28 Environment:DYLD_LIBRARY_PATH=(unset)
06:33:28
06:33:28 OMERO SSL port:4064
06:33:28 OMERO TCP port:4063
06:33:28 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
06:33:28 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
06:33:28
06:33:28 JVM settings: Blitz-${index} -Xmx7200m
06:33:28 JVM settings: Indexer-${index} -Xmx4800m
06:33:28 JVM settings: PixelData-${index} -Xmx7200m
06:33:28 JVM settings: Repository-${index} -Xmx4800m
06:33:28
06:33:28 Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a
06:33:28 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a
06:33:28 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 12 June 2025 55487859c47c6e07764f09ec713aa9dc192b5a3a
06:33:28 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 12 June 2025 b86c3f5c882e5d79e014e51b1cb99e3c64f96bb3
06:33:28 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
06:33:28 Jar: lib/server/omero-zarr-pixel-buffer-0.4.1.jar OMERO Zarr Pixel Buffer 0.4.1 7c2d45bab0b51137dada7abda144282d6dcc76e1
06:33:29 + deactivate
06:33:29 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
06:33:29 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:33:29 + export PATH
06:33:29 + unset _OLD_VIRTUAL_PATH
06:33:29 + '[' -n '' ']'
06:33:29 + hash -r
06:33:29 + '[' -n '' ']'
06:33:29 + unset VIRTUAL_ENV
06:33:29 + unset VIRTUAL_ENV_PROMPT
06:33:29 + '[' '!' '' = nondestructive ']'
06:33:29 + unset -f deactivate
06:33:29 Finished: SUCCESS
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