15:23:05 Started by user devspace
15:23:05 Running as SYSTEM
15:23:06 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
15:23:06 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10966453200247676834.sh
15:23:06 + source /home/settings.env
15:23:06 ++ OMERO_DB_HOST=pg
15:23:06 ++ OMERO_DB_USER=postgres
15:23:06 ++ OMERO_DB_PASS=
15:23:06 ++ OMERO_ROOT_PASS=omero
15:23:06 ++ OMERO_DATA_DIR=/OMERO
15:23:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:23:06 + OMERO_DB_NAME=OMERO-server
15:23:06 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:23:06 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:23:06 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:23:06 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:23:06 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
15:23:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:23:06 ++ deactivate nondestructive
15:23:06 ++ '[' -n '' ']'
15:23:06 ++ '[' -n '' ']'
15:23:06 ++ '[' -n /bin/bash -o -n '' ']'
15:23:06 ++ hash -r
15:23:06 ++ '[' -n '' ']'
15:23:06 ++ unset VIRTUAL_ENV
15:23:06 ++ '[' '!' nondestructive = nondestructive ']'
15:23:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:23:06 ++ export VIRTUAL_ENV
15:23:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:06 ++ export PATH
15:23:06 ++ '[' -n '' ']'
15:23:06 ++ '[' -z '' ']'
15:23:06 ++ _OLD_VIRTUAL_PS1=
15:23:06 ++ PS1='(.venv3) '
15:23:06 ++ export PS1
15:23:06 ++ '[' -n /bin/bash -o -n '' ']'
15:23:06 ++ hash -r
15:23:06 + omero admin stop
15:23:31 Server not running
15:23:31 + echo not running
15:23:31 not running
15:23:31 + sleep 5
15:23:36 + deactivate
15:23:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:23:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:36 + export PATH
15:23:36 + unset _OLD_VIRTUAL_PATH
15:23:36 + '[' -n '' ']'
15:23:36 + '[' -n /bin/bash -o -n '' ']'
15:23:36 + hash -r
15:23:36 + '[' -n '' ']'
15:23:36 + unset VIRTUAL_ENV
15:23:36 + '[' '!' '' = nondestructive ']'
15:23:36 + unset -f deactivate
15:23:36 + rm -rf /home/omero/workspace/OMERO-server/.venv3
15:23:36 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
15:23:41 + '[' false = true ']'
15:23:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
15:23:41 Skipping PURGE_DATA:CleanDbAndRepo
15:23:41 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
15:23:43 Copied 1 artifact from "OMERO-build" build number 40
15:23:43 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 40
15:23:44 Copied 2 artifacts from "OMERO-build-build" build number 41
15:23:44 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1729254403860020490.sh
15:23:44 + source /home/settings.env
15:23:44 ++ OMERO_DB_HOST=pg
15:23:44 ++ OMERO_DB_USER=postgres
15:23:44 ++ OMERO_DB_PASS=
15:23:44 ++ OMERO_ROOT_PASS=omero
15:23:44 ++ OMERO_DATA_DIR=/OMERO
15:23:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:23:44 + OMERO_DB_NAME=OMERO-server
15:23:44 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:23:44 + mkdir -p /home/omero/omero-server-data
15:23:44 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:23:44 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:23:44 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:23:44 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:23:44 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:23:44 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:23:44 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:23:44 ++ ls OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip
15:23:44 + ZIP=OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip
15:23:44 + '[' '!' -z '' ']'
15:23:44 + DIST=OMERO.server-5.6.3-456-f824c5f0bb-ice36
15:23:44 + unzip OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip
15:23:44 Archive: OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/blitz/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/grid/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/profiles/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/error/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/grid/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/luts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/luts/janelia/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/luts/ncsa_paledit/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/luts/wcif/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/analysis_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/annotation_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/export_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/figure_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/import_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/scripts/omero/util_scripts/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/server/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/share/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/share/licenses/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/misc/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__1/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__10/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__11/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__2/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__3/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__4/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__5/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__6/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__7/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__8/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3A__9/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3__4/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3__5/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3__6/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO3__7/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4.1__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4.2__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4.2__0/t/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4.3__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4.4__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO4__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.0__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.1__1/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.2__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.3__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4DEV__1/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4DEV__2/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4DEV__3/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/
15:23:44 creating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/var/
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/LICENSE.txt
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/backup.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/blitz/mail-senders.example
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/blitz/mail-server.example
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/build.properties
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/env.bat
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/env.sh
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/hibernate.properties
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/ice.config
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/logback-cli.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/logback-indexing-cli.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/logback-indexing.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/logback.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/mime.types
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/node1.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/node2.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/omero.properties
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/profiles/psql
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/rollover.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/Windows.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/error/maintainance.html
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/grid/README
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/grid/default.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/grid/templates.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/grid/windefault.xml
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/ice.config
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/internal.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/master.cfg
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/templates/robot.template
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/etc/testdropbox.config
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/history.rst
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/OMEZarrReader.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/activation.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aggdesigner-algorithm.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aircompressor.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/annotations.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/antlr.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aopalliance.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/avatica-core.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/avatica-metrics.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aws-java-sdk-core.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aws-java-sdk-kms.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/aws-java-sdk-s3.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/base.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-all.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-anim.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-awt-util.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-bridge.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-codec.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-constants.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-css.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-dom.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-ext.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-extension.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-gui-util.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-gvt.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-i18n.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-parser.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-rasterizer-ext.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-rasterizer.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-script.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-slideshow.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-squiggle-ext.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-squiggle.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-svg-dom.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-svgbrowser.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-svggen.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-svgpp.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-svgrasterizer.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-swing.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-transcoder.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-ttf2svg.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-util.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/batik-xml.jar
15:23:44 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/lib/client/btm.jar
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15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/psql-header.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/schema.sql
15:23:46 inflating: OMERO.server-5.6.3-456-f824c5f0bb-ice36/sql/psql/OMERO5.4__0/views.sql
15:23:46 + rm -f OMERO.server-5.6.3-456-f824c5f0bb-ice36.zip
15:23:46 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-456-f824c5f0bb-ice36 /home/omero/workspace/OMERO-server/OMERO.server
15:23:46 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:23:46 ++ deactivate nondestructive
15:23:46 ++ '[' -n '' ']'
15:23:46 ++ '[' -n '' ']'
15:23:46 ++ '[' -n /bin/bash -o -n '' ']'
15:23:46 ++ hash -r
15:23:46 ++ '[' -n '' ']'
15:23:46 ++ unset VIRTUAL_ENV
15:23:46 ++ '[' '!' nondestructive = nondestructive ']'
15:23:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:23:46 ++ export VIRTUAL_ENV
15:23:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:46 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:46 ++ export PATH
15:23:46 ++ '[' -n '' ']'
15:23:46 ++ '[' -z '' ']'
15:23:46 ++ _OLD_VIRTUAL_PS1=
15:23:46 ++ PS1='(.venv3) '
15:23:46 ++ export PS1
15:23:46 ++ '[' -n /bin/bash -o -n '' ']'
15:23:46 ++ hash -r
15:23:46 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
15:23:46 Collecting zeroc-ice==3.6.5
15:23:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
15:23:50 Installing collected packages: zeroc-ice
15:23:51 Successfully installed zeroc-ice-3.6.5
15:23:51 + pip install -U pip future
15:23:51 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
15:23:52 Collecting pip
15:23:52 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
15:23:52 Collecting future
15:23:52 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:23:52 Installing collected packages: pip, future
15:23:52 Attempting uninstall: pip
15:23:52 Found existing installation: pip 21.2.3
15:23:52 Uninstalling pip-21.2.3:
15:23:52 Successfully uninstalled pip-21.2.3
15:23:54 Successfully installed future-1.0.0 pip-24.0
15:23:54 + pip install markdown
15:23:54 Collecting markdown
15:23:54 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
15:23:54 Collecting importlib-metadata>=4.4 (from markdown)
15:23:54 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
15:23:54 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
15:23:54 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
15:23:55 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
15:23:55 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
15:23:55 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
15:23:55 Installing collected packages: zipp, importlib-metadata, markdown
15:23:55 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
15:23:55 + pip install reportlab
15:23:56 Collecting reportlab
15:23:56 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB)
15:23:56 Collecting pillow>=9.0.0 (from reportlab)
15:23:56 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
15:23:56 Collecting chardet (from reportlab)
15:23:56 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
15:23:57 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB)
15:23:57 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
15:23:57 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
15:23:57 Installing collected packages: pillow, chardet, reportlab
15:23:58 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0
15:23:58 + pip install omego
15:23:59 Collecting omego
15:23:59 Using cached omego-0.7.0-py3-none-any.whl
15:23:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
15:23:59 Collecting yaclifw>=0.1.1 (from omego)
15:23:59 Using cached yaclifw-0.2.0-py3-none-any.whl
15:23:59 Collecting six (from yaclifw>=0.1.1->omego)
15:23:59 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
15:23:59 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
15:23:59 Installing collected packages: six, yaclifw, omego
15:24:00 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
15:24:00 + pip install tables
15:24:00 Collecting tables
15:24:00 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
15:24:01 Collecting numpy>=1.19.0 (from tables)
15:24:01 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
15:24:01 Collecting numexpr>=2.6.2 (from tables)
15:24:01 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
15:24:01 Collecting packaging (from tables)
15:24:01 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
15:24:01 Collecting py-cpuinfo (from tables)
15:24:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
15:24:01 Collecting blosc2>=2.3.0 (from tables)
15:24:01 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
15:24:01 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
15:24:01 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
15:24:01 Collecting msgpack (from blosc2>=2.3.0->tables)
15:24:01 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
15:24:01 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
15:24:02 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
15:24:02 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
15:24:02 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
15:24:02 Using cached packaging-24.0-py3-none-any.whl (53 kB)
15:24:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
15:24:02 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
15:24:02 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
15:24:02 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
15:24:05 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
15:24:05 + pip install jinja2
15:24:06 Collecting jinja2
15:24:06 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
15:24:06 Collecting MarkupSafe>=2.0 (from jinja2)
15:24:06 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
15:24:06 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
15:24:06 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
15:24:06 Installing collected packages: MarkupSafe, jinja2
15:24:06 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
15:24:06 + pip install omero-py
15:24:07 Collecting omero-py
15:24:07 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB)
15:24:07 Collecting urllib3<2 (from omero-py)
15:24:07 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
15:24:07 Collecting appdirs (from omero-py)
15:24:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
15:24:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
15:24:07 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
15:24:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
15:24:07 Collecting PyYAML (from omero-py)
15:24:07 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
15:24:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
15:24:07 Collecting requests (from omero-py)
15:24:07 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
15:24:07 Collecting portalocker (from omero-py)
15:24:07 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
15:24:07 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
15:24:07 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
15:24:07 Collecting idna<4,>=2.5 (from requests->omero-py)
15:24:07 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
15:24:07 Collecting certifi>=2017.4.17 (from requests->omero-py)
15:24:07 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
15:24:07 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB)
15:24:07 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
15:24:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:24:07 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
15:24:07 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
15:24:08 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
15:24:08 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
15:24:08 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
15:24:08 Using cached idna-3.7-py3-none-any.whl (66 kB)
15:24:08 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
15:24:11 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
15:24:11 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
15:24:12 Collecting omero-metadata
15:24:12 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-9of4bt_2/omero-metadata_40921c0ec9c14ee0b584525fe198ddc3
15:24:12 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-9of4bt_2/omero-metadata_40921c0ec9c14ee0b584525fe198ddc3
15:24:13 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 8ebacd63f0a49fd2c4caacd50bf684eacacd71b9
15:24:13 Installing build dependencies: started
15:24:15 Installing build dependencies: finished with status 'done'
15:24:15 Getting requirements to build wheel: started
15:24:15 Getting requirements to build wheel: finished with status 'done'
15:24:15 Installing backend dependencies: started
15:24:16 Installing backend dependencies: finished with status 'done'
15:24:16 Preparing metadata (pyproject.toml): started
15:24:16 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.1)
15:24:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
15:24:16 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
15:24:16 Collecting pandas (from omero-metadata)
15:24:16 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
15:24:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
15:24:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
15:24:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
15:24:16 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
15:24:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
15:24:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
15:24:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
15:24:16 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
15:24:16 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
15:24:17 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
15:24:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
15:24:17 Collecting pytz>=2020.1 (from pandas->omero-metadata)
15:24:17 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
15:24:17 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
15:24:17 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
15:24:17 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
15:24:17 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
15:24:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
15:24:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
15:24:17 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
15:24:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
15:24:17 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
15:24:17 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
15:24:17 Building wheels for collected packages: omero-metadata
15:24:17 Building wheel for omero-metadata (pyproject.toml): started
15:24:18 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
15:24:18 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=805cefb6b661deb2c1a3e8ed579d125cf3d51290060df7ba66910dd8de0fdf20
15:24:18 Stored in directory: /tmp/pip-ephem-wheel-cache-q3p56v2r/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
15:24:18 Successfully built omero-metadata
15:24:19 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
15:24:24 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
15:24:24 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
15:24:24 Collecting omero-cli-render
15:24:24 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-7pdcf7ww/omero-cli-render_7f8847cf66194b09b418889acf82362c
15:24:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-7pdcf7ww/omero-cli-render_7f8847cf66194b09b418889acf82362c
15:24:25 Running command git checkout -b merge_ci --track origin/merge_ci
15:24:26 Switched to a new branch 'merge_ci'
15:24:26 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:24:26 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 9aa528b86acabc91d416c2db58e658274719bd98
15:24:26 Installing build dependencies: started
15:24:27 Installing build dependencies: finished with status 'done'
15:24:27 Getting requirements to build wheel: started
15:24:28 Getting requirements to build wheel: finished with status 'done'
15:24:28 Installing backend dependencies: started
15:24:28 Installing backend dependencies: finished with status 'done'
15:24:28 Preparing metadata (pyproject.toml): started
15:24:29 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:29 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
15:24:29 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.1)
15:24:29 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
15:24:29 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
15:24:29 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
15:24:29 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
15:24:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
15:24:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
15:24:29 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
15:24:29 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
15:24:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
15:24:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
15:24:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
15:24:29 Building wheels for collected packages: omero-cli-render
15:24:29 Building wheel for omero-cli-render (pyproject.toml): started
15:24:29 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
15:24:29 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=6eb5f75b498a8c0ea5a940990c9b55c14618318481dac5786060c6a3b57f298b
15:24:29 Stored in directory: /tmp/pip-ephem-wheel-cache-ngrvz8gx/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
15:24:29 Successfully built omero-cli-render
15:24:29 Installing collected packages: omero-cli-render
15:24:29 Successfully installed omero-cli-render-0.8.1.dev0
15:24:29 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
15:24:30 Collecting omero-cli-duplicate
15:24:30 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-p_kwv6ah/omero-cli-duplicate_8df9cd59ac2d4ccaa05367ae35c8ae7f
15:24:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-p_kwv6ah/omero-cli-duplicate_8df9cd59ac2d4ccaa05367ae35c8ae7f
15:24:31 Running command git checkout -b merge_ci --track origin/merge_ci
15:24:31 Switched to a new branch 'merge_ci'
15:24:31 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:24:31 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c44787f19a7c4b6b7864c352b9c65f36ac178cee
15:24:31 Installing build dependencies: started
15:24:33 Installing build dependencies: finished with status 'done'
15:24:33 Getting requirements to build wheel: started
15:24:33 Getting requirements to build wheel: finished with status 'done'
15:24:33 Installing backend dependencies: started
15:24:34 Installing backend dependencies: finished with status 'done'
15:24:34 Preparing metadata (pyproject.toml): started
15:24:34 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:34 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.1)
15:24:34 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
15:24:34 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
15:24:34 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
15:24:34 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
15:24:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
15:24:34 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
15:24:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
15:24:34 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
15:24:34 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
15:24:34 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
15:24:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
15:24:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
15:24:34 Building wheels for collected packages: omero-cli-duplicate
15:24:34 Building wheel for omero-cli-duplicate (pyproject.toml): started
15:24:34 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
15:24:34 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=1f919ae15ece8cd39ffdddd3a9f143ca9d7c943fcab066fcf825a55622ba7b90
15:24:34 Stored in directory: /tmp/pip-ephem-wheel-cache-n6tn2074/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
15:24:34 Successfully built omero-cli-duplicate
15:24:35 Installing collected packages: omero-cli-duplicate
15:24:35 Successfully installed omero-cli-duplicate-0.4.1.dev0
15:24:35 + pip install omero-certificates
15:24:35 Collecting omero-certificates
15:24:35 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
15:24:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.1)
15:24:35 Collecting distro==1.8.0 (from omero-certificates)
15:24:35 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
15:24:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
15:24:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
15:24:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
15:24:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
15:24:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
15:24:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
15:24:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
15:24:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
15:24:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
15:24:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
15:24:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
15:24:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
15:24:36 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
15:24:36 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
15:24:36 Installing collected packages: distro, omero-certificates
15:24:36 Successfully installed distro-1.8.0 omero-certificates-0.3.2
15:24:36 + for x in *.tar.gz
15:24:36 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz
15:24:36 Processing ./omero_dropbox-5.6.3.dev0.tar.gz
15:24:36 Installing build dependencies: started
15:24:38 Installing build dependencies: finished with status 'done'
15:24:38 Getting requirements to build wheel: started
15:24:38 Getting requirements to build wheel: finished with status 'done'
15:24:38 Installing backend dependencies: started
15:24:39 Installing backend dependencies: finished with status 'done'
15:24:39 Preparing metadata (pyproject.toml): started
15:24:39 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:39 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.1)
15:24:39 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
15:24:39 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
15:24:39 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
15:24:39 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
15:24:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0)
15:24:39 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
15:24:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
15:24:39 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
15:24:39 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
15:24:39 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
15:24:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7)
15:24:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
15:24:39 Building wheels for collected packages: omero-dropbox
15:24:39 Building wheel for omero-dropbox (pyproject.toml): started
15:24:39 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
15:24:39 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=464f638f18b77bff2ab44ed77ad8bc0e38c086c424ac28138cccadd88e73fa9a
15:24:39 Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6
15:24:40 Successfully built omero-dropbox
15:24:40 Installing collected packages: omero-dropbox
15:24:40 Successfully installed omero-dropbox-5.6.3.dev0
15:24:40 + for x in *.tar.gz
15:24:40 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
15:24:40 Processing ./omero_marshal-0.9.1.dev0.tar.gz
15:24:40 Installing build dependencies: started
15:24:43 Installing build dependencies: finished with status 'done'
15:24:43 Getting requirements to build wheel: started
15:24:44 Getting requirements to build wheel: finished with status 'done'
15:24:44 Installing backend dependencies: started
15:24:44 Installing backend dependencies: finished with status 'done'
15:24:44 Preparing metadata (pyproject.toml): started
15:24:45 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:45 Building wheels for collected packages: omero_marshal
15:24:45 Building wheel for omero_marshal (pyproject.toml): started
15:24:45 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
15:24:45 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=a11c6bce927994f340055bb6c1a7dabfbdb05473334fae54df93af743f1e12f5
15:24:45 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
15:24:45 Successfully built omero_marshal
15:24:45 Installing collected packages: omero_marshal
15:24:45 Successfully installed omero_marshal-0.9.1.dev0
15:24:45 + for x in *.tar.gz
15:24:45 + pip install -U omero_py-5.19.2.dev0.tar.gz
15:24:46 Processing ./omero_py-5.19.2.dev0.tar.gz
15:24:46 Installing build dependencies: started
15:24:48 Installing build dependencies: finished with status 'done'
15:24:48 Getting requirements to build wheel: started
15:24:48 Getting requirements to build wheel: finished with status 'done'
15:24:48 Installing backend dependencies: started
15:24:49 Installing backend dependencies: finished with status 'done'
15:24:49 Preparing metadata (pyproject.toml): started
15:24:49 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18)
15:24:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4)
15:24:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0)
15:24:49 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4)
15:24:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.3.0)
15:24:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1)
15:24:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5)
15:24:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0)
15:24:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2)
15:24:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2)
15:24:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.7)
15:24:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2)
15:24:49 Building wheels for collected packages: omero-py
15:24:49 Building wheel for omero-py (pyproject.toml): started
15:24:50 Building wheel for omero-py (pyproject.toml): finished with status 'done'
15:24:50 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2782056 sha256=7283d619c95f9e800eadd0bd20a6329ac543d161cd59b52f4c63e0ece6eedc31
15:24:50 Stored in directory: /home/omero/.cache/pip/wheels/ea/20/e5/a97f3d9612c4992136d63e55f22641013e62a9095142003978
15:24:50 Successfully built omero-py
15:24:50 Installing collected packages: omero-py
15:24:50 Attempting uninstall: omero-py
15:24:50 Found existing installation: omero-py 5.19.1
15:24:50 Uninstalling omero-py-5.19.1:
15:24:51 Successfully uninstalled omero-py-5.19.1
15:24:53 Successfully installed omero-py-5.19.2.dev0
15:24:53 + for x in *.tar.gz
15:24:53 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
15:24:53 Processing ./omero_scripts-5.8.3.dev0.tar.gz
15:24:53 Installing build dependencies: started
15:24:56 Installing build dependencies: finished with status 'done'
15:24:56 Getting requirements to build wheel: started
15:24:56 Getting requirements to build wheel: finished with status 'done'
15:24:56 Installing backend dependencies: started
15:24:57 Installing backend dependencies: finished with status 'done'
15:24:57 Preparing metadata (pyproject.toml): started
15:24:57 Preparing metadata (pyproject.toml): finished with status 'done'
15:24:57 Building wheels for collected packages: omero-scripts
15:24:57 Building wheel for omero-scripts (pyproject.toml): started
15:24:58 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
15:24:58 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=4c61c8e362ddcbd9fc8233cd0d44725df39ee530112346711c04a05dbeb00842
15:24:58 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
15:24:58 Successfully built omero-scripts
15:24:58 Installing collected packages: omero-scripts
15:24:58 Successfully installed omero-scripts-5.8.3.dev0
15:24:58 + for x in *.tar.gz
15:24:58 + pip install -U omero_web-5.25.1.dev0.tar.gz
15:24:58 Processing ./omero_web-5.25.1.dev0.tar.gz
15:24:59 Installing build dependencies: started
15:25:00 Installing build dependencies: finished with status 'done'
15:25:00 Getting requirements to build wheel: started
15:25:01 Getting requirements to build wheel: finished with status 'done'
15:25:01 Installing backend dependencies: started
15:25:01 Installing backend dependencies: finished with status 'done'
15:25:01 Preparing metadata (pyproject.toml): started
15:25:02 Preparing metadata (pyproject.toml): finished with status 'done'
15:25:02 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0)
15:25:02 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
15:25:02 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
15:25:02 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
15:25:02 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
15:25:02 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
15:25:02 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
15:25:02 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
15:25:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
15:25:02 Collecting django-csp (from omero-web==5.25.1.dev0)
15:25:02 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
15:25:03 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
15:25:03 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
15:25:03 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
15:25:03 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
15:25:03 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
15:25:03 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
15:25:03 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
15:25:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
15:25:03 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
15:25:03 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
15:25:03 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
15:25:03 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
15:25:03 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
15:25:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
15:25:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
15:25:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
15:25:03 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
15:25:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
15:25:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
15:25:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
15:25:03 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
15:25:03 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
15:25:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
15:25:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
15:25:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
15:25:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
15:25:03 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
15:25:03 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
15:25:03 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
15:25:04 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
15:25:04 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
15:25:04 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
15:25:04 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
15:25:04 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
15:25:04 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
15:25:04 Building wheels for collected packages: omero-web
15:25:04 Building wheel for omero-web (pyproject.toml): started
15:25:05 Building wheel for omero-web (pyproject.toml): finished with status 'done'
15:25:05 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770170 sha256=4c3306239577b1fd03048e9c1834a850e025cf2a588f51aa043473bc05c64cd6
15:25:05 Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9
15:25:05 Successfully built omero-web
15:25:05 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
15:25:08 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
15:25:08 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:25:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
15:25:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
15:25:09 --2024-04-23 15:25:09-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:25:10 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ...
15:25:10 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
15:25:10 HTTP request sent, awaiting response... 200 OK
15:25:10 Length: 94637 (92K) [text/plain]
15:25:10 Saving to: ‘Figure_To_Pdf.py’
15:25:10
15:25:10 0K .......... .......... .......... .......... .......... 54% 3.46M 0s
15:25:10 50K .......... .......... .......... .......... .. 100% 11.0M=0.02s
15:25:10
15:25:10 2024-04-23 15:25:10 (5.05 MB/s) - ‘Figure_To_Pdf.py’ saved [94637/94637]
15:25:10
15:25:10 + chmod 755 Figure_To_Pdf.py
15:25:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
15:25:10 + omero config set omero.db.name OMERO-server
15:25:11 + omero config set omero.db.host pg
15:25:12 + omero config set omero.db.user postgres
15:25:14 + omero config set omero.data.dir /home/omero/omero-server-data
15:25:15 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
15:25:16 + omero config set omero.db.poolsize 25
15:25:17 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
15:25:19 + omero config set omero.security.trustStorePassword changeit
15:25:20 + omero config set omero.mail.config true
15:25:21 + omero config set omero.mail.from qa@openmicroscopy.org.uk
15:25:23 + omero config set omero.mail.host smtp.dundee.ac.uk
15:25:24 + omero certificates
15:25:26 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
15:25:26 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
15:25:26 + '[' false = true ']'
15:25:26 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
15:25:26 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
15:25:26 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG dbcommand => upgrade
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG dbhost => localhost
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG dbname => OMERO-server
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG dbpass => omero
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG dbuser => omero
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG rootpass => omero
15:25:26 2024-04-23 15:25:26,559 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
15:25:26 2024-04-23 15:25:26,559 [omego.extern] INFO Executing : omero version
15:25:27 OMERO.py version:
15:25:27 OMERO.server version:
15:25:27 5.6.3-456-f824c5f0bb-ice36
15:25:27 5.19.2.dev0
15:25:27 2024-04-23 15:25:27,923 [omego.extern] INFO Completed [1.364 s]
15:25:27 2024-04-23 15:25:27,923 [omego.extern] DEBUG Using omero CLI from omero
15:25:27 2024-04-23 15:25:27,924 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
15:25:27 2024-04-23 15:25:27,924 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:25:27 2024-04-23 15:25:27,924 [omego.extern] INFO Executing : omero config get --show-password
15:25:29 2024-04-23 15:25:29,172 [omego.extern] INFO Completed [1.248 s]
15:25:29 2024-04-23 15:25:29,172 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:25:29 2024-04-23 15:25:29,173 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
15:25:29 2024-04-23 15:25:29,472 [omego.extern] INFO Completed [0.300 s]
15:25:29 2024-04-23 15:25:29,472 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
15:25:29 2024-04-23 15:25:29,473 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
15:25:29
15:25:29 2024-04-23 15:25:29,473 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:25:29 2024-04-23 15:25:29,473 [omego.extern] INFO Executing : omero config get --show-password
15:25:30 2024-04-23 15:25:30,754 [omego.extern] INFO Completed [1.281 s]
15:25:30 2024-04-23 15:25:30,755 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:25:30 2024-04-23 15:25:30,755 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
15:25:30 2024-04-23 15:25:30,764 [omego.extern] INFO Completed [0.010 s]
15:25:30 2024-04-23 15:25:30,765 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.8") at port "5432".\n'
15:25:30 2024-04-23 15:25:30,765 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:25:30 2024-04-23 15:25:30,765 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:25:30 2024-04-23 15:25:30,765 [omego.extern] INFO Executing : omero config get --show-password
15:25:32 2024-04-23 15:25:32,014 [omego.extern] INFO Completed [1.249 s]
15:25:32 2024-04-23 15:25:32,014 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:25:32 2024-04-23 15:25:32,014 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:25:32 2024-04-23 15:25:32,775 [omego.extern] INFO Completed [0.761 s]
15:25:32 2024-04-23 15:25:32,775 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
15:25:32 2024-04-23 15:25:32,775 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
15:25:32 2024-04-23 15:25:32,777 [ omego.db] INFO Database is already at OMERO5.4__0
15:25:32 + export LANG=en_US.UTF-8
15:25:32 + LANG=en_US.UTF-8
15:25:32 + export LANGUAGE=en_US:en
15:25:32 + LANGUAGE=en_US:en
15:25:32 + export LC_ALL=en_US.UTF-8
15:25:32 + LC_ALL=en_US.UTF-8
15:25:32 + BUILD_ID=DONT_KILL_ME
15:25:32 + omero admin start
15:25:42 No descriptor given. Using etc/grid/default.xml
15:25:51 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
15:25:51 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
15:25:51 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
15:25:51 Waiting on startup. Use CTRL-C to exit
15:25:51 + omero admin waitup
15:25:52 Waiting on startup. Use CTRL-C to exit
15:25:52 + omero admin diagnostics
15:25:53
15:25:53 ================================================================================
15:25:53 OMERO Diagnostics (admin)
15:25:53 ================================================================================
15:25:53
15:25:53 Commands: java -version 11.0.22 (/usr/bin/java)
15:25:53 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
15:25:53 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
15:25:53 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
15:25:53 Commands: psql --version 16.2 (/usr/bin/psql)
15:25:53 Commands: openssl version 3.0.71 (/usr/bin/openssl)
15:25:53
15:25:53 Component: OMERO.py 5.19.2.dev0
15:25:53 Component: OMERO.server 5.6.3-456-f824c5f0bb-ice36
15:25:53
15:25:53 Server: icegridnode running
15:25:53 Server: Blitz-0 active (pid = 2509, enabled)
15:25:53 Server: DropBox activating (enabled)
15:25:53 Server: FileServer active (pid = 2534, enabled)
15:25:53 Server: Indexer-0 activating (enabled)
15:25:53 Server: MonitorServer active (pid = 2544, enabled)
15:25:53 Server: OMERO.Glacier2 active (pid = 2619, enabled)
15:25:53 Server: OMERO.IceStorm active (pid = 2563, enabled)
15:25:53 Server: PixelData-0 activating (enabled)
15:25:53 Server: Processor-0 activating (enabled)
15:25:53 Server: Tables-0 activating (enabled)
15:25:54 Server: TestDropBox inactive (enabled)
15:25:54
15:25:54 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
15:25:54 Log files: Blitz-0.log 13.8 KB errors=0 warnings=1
15:25:54 Log files: DropBox.log 121 B
15:25:54 Log files: FileServer.log 114 B
15:25:54 Log files: Indexer-0.log 238 B
15:25:54 Log files: MonitorServer.log 117 B
15:25:54 Log files: PixelData-0.log 114 B
15:25:54 Log files: Processor-0.log 281 B
15:25:54 Log files: Tables-0.log 281 B
15:25:54 Log files: TestDropBox.log n/a
15:25:54 Log files: master.err 869 B
15:25:54 Log files: master.out 41.5 KB
15:25:54 Log files: Total size 0.06 MB
15:25:54
15:25:54
15:25:54 Environment:OMERO_HOME=(unset)
15:25:54 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:25:54 Environment:OMERO_NODE=(unset)
15:25:54 Environment:OMERO_MASTER=(unset)
15:25:54 Environment:OMERO_USERDIR=(unset)
15:25:54 Environment:OMERO_TMPDIR=(unset)
15:25:54 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:25:54 Environment:PYTHONPATH=(unset)
15:25:54 Environment:ICE_HOME=/opt/ice-3.6.5
15:25:54 Environment:LD_LIBRARY_PATH=(unset)
15:25:54 Environment:DYLD_LIBRARY_PATH=(unset)
15:25:54
15:25:54 OMERO SSL port:4064
15:25:54 OMERO TCP port:4063
15:25:54 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
15:25:54 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
15:25:54
15:25:54 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:25:54 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:25:54 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:25:54 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:25:54
15:25:54 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 23 April 2024 529b1ea07172f91a2a0d32d9e00bd4c3b0900d04
15:25:54 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 23 April 2024 529b1ea07172f91a2a0d32d9e00bd4c3b0900d04
15:25:54 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 23 April 2024 529b1ea07172f91a2a0d32d9e00bd4c3b0900d04
15:25:54 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 23 April 2024 e8a6b1f22aeacdc5d3c9740f8bbe19e1d158bdaf
15:25:54 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT
15:25:54 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT
15:25:54 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT
15:25:54 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT
15:25:54 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT
15:25:54 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT
15:25:54 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT
15:25:54 + deactivate
15:25:54 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:25:54 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:25:54 + export PATH
15:25:54 + unset _OLD_VIRTUAL_PATH
15:25:54 + '[' -n '' ']'
15:25:54 + '[' -n /bin/bash -o -n '' ']'
15:25:54 + hash -r
15:25:54 + '[' -n '' ']'
15:25:54 + unset VIRTUAL_ENV
15:25:54 + '[' '!' '' = nondestructive ']'
15:25:54 + unset -f deactivate
15:25:55 Finished: SUCCESS
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