00:32:21 Started by upstream project "Trigger" build number 540
00:32:21 originally caused by:
00:32:21 Started by timer
00:32:21 Running as SYSTEM
00:32:21 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:32:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4986568123224199387.sh
00:32:21 + source /home/settings.env
00:32:21 ++ OMERO_DB_HOST=pg
00:32:21 ++ OMERO_DB_USER=postgres
00:32:21 ++ OMERO_DB_PASS=
00:32:21 ++ OMERO_ROOT_PASS=omero
00:32:21 ++ OMERO_DATA_DIR=/OMERO
00:32:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:32:21 + OMERO_DB_NAME=OMERO-server
00:32:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:32:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:32:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:32:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:32:21 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:32:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:32:21 ++ deactivate nondestructive
00:32:21 ++ '[' -n '' ']'
00:32:21 ++ '[' -n '' ']'
00:32:21 ++ hash -r
00:32:21 ++ '[' -n '' ']'
00:32:21 ++ unset VIRTUAL_ENV
00:32:21 ++ unset VIRTUAL_ENV_PROMPT
00:32:21 ++ '[' '!' nondestructive = nondestructive ']'
00:32:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:32:21 ++ export VIRTUAL_ENV
00:32:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:32:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:32:21 ++ export PATH
00:32:21 ++ '[' -n '' ']'
00:32:21 ++ '[' -z '' ']'
00:32:21 ++ _OLD_VIRTUAL_PS1=
00:32:21 ++ PS1='(.venv3) '
00:32:21 ++ export PS1
00:32:21 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:32:21 ++ export VIRTUAL_ENV_PROMPT
00:32:21 ++ hash -r
00:32:21 + omero admin stop
00:32:23 Waiting on shutdown. Use CTRL-C to exit
00:32:23 .+ sleep 5
00:32:38 + deactivate
00:32:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:32:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:32:38 + export PATH
00:32:38 + unset _OLD_VIRTUAL_PATH
00:32:38 + '[' -n '' ']'
00:32:38 + hash -r
00:32:38 + '[' -n '' ']'
00:32:38 + unset VIRTUAL_ENV
00:32:38 + unset VIRTUAL_ENV_PROMPT
00:32:38 + '[' '!' '' = nondestructive ']'
00:32:38 + unset -f deactivate
00:32:38 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:32:39 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:32:43 + '[' false = true ']'
00:32:43 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:32:43 Skipping PURGE_DATA:CleanDbAndRepo
00:32:43 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:32:45 Copied 1 artifact from "OMERO-build" build number 455
00:32:45 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 448
00:32:45 Copied 2 artifacts from "OMERO-build-build" build number 478
00:32:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9150654528624157355.sh
00:32:45 + source /home/settings.env
00:32:45 ++ OMERO_DB_HOST=pg
00:32:45 ++ OMERO_DB_USER=postgres
00:32:45 ++ OMERO_DB_PASS=
00:32:45 ++ OMERO_ROOT_PASS=omero
00:32:45 ++ OMERO_DATA_DIR=/OMERO
00:32:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:32:45 + OMERO_DB_NAME=OMERO-server
00:32:45 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:32:45 + mkdir -p /home/omero/omero-server-data
00:32:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:32:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:32:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:32:45 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:32:45 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:32:45 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:32:45 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:32:45 ++ ls OMERO.server-5.6.3-569-b8528b6467-ice36-b455.zip
00:32:45 + ZIP=OMERO.server-5.6.3-569-b8528b6467-ice36-b455.zip
00:32:45 + '[' '!' -z '' ']'
00:32:45 + DIST=OMERO.server-5.6.3-569-b8528b6467-ice36-b455
00:32:45 + unzip OMERO.server-5.6.3-569-b8528b6467-ice36-b455.zip
00:32:45 Archive: OMERO.server-5.6.3-569-b8528b6467-ice36-b455.zip
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/blitz/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/grid/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/profiles/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/error/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/grid/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/janelia/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/matplotlib/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/ncsa_paledit/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/seaborn/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/luts/wcif/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/analysis_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/annotation_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/export_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/figure_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/import_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/scripts/omero/util_scripts/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/server/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/share/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/share/licenses/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/misc/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__1/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__10/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__11/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__2/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__3/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__4/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__5/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__6/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__7/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__8/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3A__9/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3__4/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3__5/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3__6/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO3__7/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4.1__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4.2__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4.2__0/t/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4.3__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4.4__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO4__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.0__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.1__1/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.2__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__1/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__2/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__3/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/
00:32:45 creating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/var/
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/LICENSE.txt
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/backup.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/blitz/mail-senders.example
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/blitz/mail-server.example
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/build.properties
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/env.bat
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/env.sh
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/hibernate.properties
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/ice.config
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/logback-cli.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/logback-indexing-cli.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/logback-indexing.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/logback.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/mime.types
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/node1.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/node2.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/omero.properties
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/profiles/psql
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/rollover.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/Windows.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/error/maintainance.html
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/grid/README
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/grid/default.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/grid/templates.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/grid/windefault.xml
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/ice.config
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/internal.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/master.cfg
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/templates/robot.template
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/etc/testdropbox.config
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/history.rst
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/OMEZarrReader.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/accessors-smart.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/activation.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aggdesigner-algorithm.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aircompressor.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/antlr.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aopalliance.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/apiguardian-api.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/asm.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/avatica-core.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/avatica-metrics.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aws-java-sdk-core.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aws-java-sdk-kms.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/aws-java-sdk-s3.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/base.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-anim.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-awt-util.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-bridge.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-codec.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-constants.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-css.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-dom.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-ext.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-gvt.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-i18n.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-parser.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-script.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-shared-resources.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-svg-dom.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-svggen.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-transcoder.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-util.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/batik-xml.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/btm.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/calcite-core.jar
00:32:45 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/lib/client/calcite-linq4j.jar
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00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/psql-footer.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/psql-header.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/schema.sql
00:32:47 inflating: OMERO.server-5.6.3-569-b8528b6467-ice36-b455/sql/psql/OMERO5.4__0/views.sql
00:32:47 + rm -f OMERO.server-5.6.3-569-b8528b6467-ice36-b455.zip
00:32:47 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-569-b8528b6467-ice36-b455 /home/omero/workspace/OMERO-server/OMERO.server
00:32:47 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server/ https://artifacts.glencoesoftware.com:443/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar
00:32:47 --2025-06-30 00:32:47-- https://artifacts.glencoesoftware.com/artifactory/omero-plus/com/glencoesoftware/omero/omero-zarr-pixel-buffer/0.4.1/omero-zarr-pixel-buffer-0.4.1.jar
00:32:47 Resolving artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)... 67.205.169.144, 2604:a880:400:d0::19b7:6001
00:32:47 Connecting to artifacts.glencoesoftware.com (artifacts.glencoesoftware.com)|67.205.169.144|:443... connected.
00:32:48 HTTP request sent, awaiting response... 200 OK
00:32:48 Length: 26159 (26K) [application/java-archive]
00:32:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’
00:32:48
00:32:48 0K .......... .......... ..... 100% 118M=0s
00:32:48
00:32:48 2025-06-30 00:32:48 (118 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.4.1.jar’ saved [26159/26159]
00:32:48
00:32:48 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:32:48 --2025-06-30 00:32:48-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:32:48 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:32:48 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:32:48 HTTP request sent, awaiting response... 200 OK
00:32:48 Length: 889211 (868K) [application/java-archive]
00:32:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:32:48
00:32:48 0K .......... .......... .......... .......... .......... 5% 4.22M 0s
00:32:48 50K .......... .......... .......... .......... .......... 11% 10.9M 0s
00:32:48 100K .......... .......... .......... .......... .......... 17% 6.67M 0s
00:32:48 150K .......... .......... .......... .......... .......... 23% 23.3M 0s
00:32:48 200K .......... .......... .......... .......... .......... 28% 8.32M 0s
00:32:48 250K .......... .......... .......... .......... .......... 34% 32.6M 0s
00:32:48 300K .......... .......... .......... .......... .......... 40% 26.3M 0s
00:32:48 350K .......... .......... .......... .......... .......... 46% 91.4M 0s
00:32:48 400K .......... .......... .......... .......... .......... 51% 66.0M 0s
00:32:48 450K .......... .......... .......... .......... .......... 57% 8.32M 0s
00:32:48 500K .......... .......... .......... .......... .......... 63% 19.1M 0s
00:32:48 550K .......... .......... .......... .......... .......... 69% 137M 0s
00:32:48 600K .......... .......... .......... .......... .......... 74% 40.4M 0s
00:32:48 650K .......... .......... .......... .......... .......... 80% 34.6M 0s
00:32:48 700K .......... .......... .......... .......... .......... 86% 8.27M 0s
00:32:48 750K .......... .......... .......... .......... .......... 92% 26.0M 0s
00:32:48 800K .......... .......... .......... .......... .......... 97% 152M 0s
00:32:48 850K .......... ........ 100% 21.6M=0.06s
00:32:48
00:32:48 2025-06-30 00:32:48 (15.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:32:48
00:32:48 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:32:48 --2025-06-30 00:32:48-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:32:48 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:32:48 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:32:48 HTTP request sent, awaiting response... 200 OK
00:32:48 Length: 73309 (72K) [application/java-archive]
00:32:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:32:48
00:32:48 0K .......... .......... .......... .......... .......... 69% 4.15M 0s
00:32:48 50K .......... .......... . 100% 11.2M=0.01s
00:32:48
00:32:48 2025-06-30 00:32:48 (5.12 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:32:48
00:32:48 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:32:48 --2025-06-30 00:32:48-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:32:49 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:32:49 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:32:49 HTTP request sent, awaiting response... 200 OK
00:32:49 Length: 63303 (62K) [application/java-archive]
00:32:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:32:49
00:32:49 0K .......... .......... .......... .......... .......... 80% 4.24M 0s
00:32:49 50K .......... . 100% 11.8M=0.01s
00:32:49
00:32:49 2025-06-30 00:32:49 (4.84 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:32:49
00:32:49 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:32:49 --2025-06-30 00:32:49-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:32:49 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:32:49 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:32:49 HTTP request sent, awaiting response... 200 OK
00:32:49 Length: 1271272 (1.2M) [application/java-archive]
00:32:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:32:49
00:32:49 0K .......... .......... .......... .......... .......... 4% 3.81M 0s
00:32:49 50K .......... .......... .......... .......... .......... 8% 6.07M 0s
00:32:49 100K .......... .......... .......... .......... .......... 12% 21.1M 0s
00:32:49 150K .......... .......... .......... .......... .......... 16% 24.3M 0s
00:32:49 200K .......... .......... .......... .......... .......... 20% 7.95M 0s
00:32:49 250K .......... .......... .......... .......... .......... 24% 32.8M 0s
00:32:49 300K .......... .......... .......... .......... .......... 28% 44.4M 0s
00:32:49 350K .......... .......... .......... .......... .......... 32% 38.1M 0s
00:32:49 400K .......... .......... .......... .......... .......... 36% 77.6M 0s
00:32:49 450K .......... .......... .......... .......... .......... 40% 7.27M 0s
00:32:49 500K .......... .......... .......... .......... .......... 44% 30.3M 0s
00:32:49 550K .......... .......... .......... .......... .......... 48% 104M 0s
00:32:49 600K .......... .......... .......... .......... .......... 52% 31.3M 0s
00:32:49 650K .......... .......... .......... .......... .......... 56% 30.9M 0s
00:32:49 700K .......... .......... .......... .......... .......... 60% 8.94M 0s
00:32:49 750K .......... .......... .......... .......... .......... 64% 31.2M 0s
00:32:49 800K .......... .......... .......... .......... .......... 68% 33.9M 0s
00:32:49 850K .......... .......... .......... .......... .......... 72% 142M 0s
00:32:49 900K .......... .......... .......... .......... .......... 76% 33.5M 0s
00:32:49 950K .......... .......... .......... .......... .......... 80% 8.43M 0s
00:32:49 1000K .......... .......... .......... .......... .......... 84% 32.1M 0s
00:32:49 1050K .......... .......... .......... .......... .......... 88% 143M 0s
00:32:49 1100K .......... .......... .......... .......... .......... 92% 33.0M 0s
00:32:49 1150K .......... .......... .......... .......... .......... 96% 30.1M 0s
00:32:49 1200K .......... .......... .......... .......... . 100% 189M=0.07s
00:32:49
00:32:49 2025-06-30 00:32:49 (17.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:32:49
00:32:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:32:49 ++ deactivate nondestructive
00:32:49 ++ '[' -n '' ']'
00:32:49 ++ '[' -n '' ']'
00:32:49 ++ hash -r
00:32:49 ++ '[' -n '' ']'
00:32:49 ++ unset VIRTUAL_ENV
00:32:49 ++ unset VIRTUAL_ENV_PROMPT
00:32:49 ++ '[' '!' nondestructive = nondestructive ']'
00:32:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:32:49 ++ export VIRTUAL_ENV
00:32:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:32:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:32:49 ++ export PATH
00:32:49 ++ '[' -n '' ']'
00:32:49 ++ '[' -z '' ']'
00:32:49 ++ _OLD_VIRTUAL_PS1=
00:32:49 ++ PS1='(.venv3) '
00:32:49 ++ export PS1
00:32:49 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:32:49 ++ export VIRTUAL_ENV_PROMPT
00:32:49 ++ hash -r
00:32:49 + pip install -U pip
00:32:49 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:32:49 Collecting pip
00:32:49 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
00:32:49 Installing collected packages: pip
00:32:49 Attempting uninstall: pip
00:32:49 Found existing installation: pip 22.3.1
00:32:50 Uninstalling pip-22.3.1:
00:32:50 Successfully uninstalled pip-22.3.1
00:32:51 Successfully installed pip-25.1.1
00:32:51 WARNING: There was an error checking the latest version of pip.
00:32:51 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:32:51 Collecting zeroc-ice==3.6.5
00:32:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:32:55 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.4 MB/s eta 0:00:00
00:32:55 Installing collected packages: zeroc-ice
00:32:56 Successfully installed zeroc-ice-3.6.5
00:32:56 + pip install markdown
00:32:57 Collecting markdown
00:32:57 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
00:32:57 Using cached markdown-3.8.2-py3-none-any.whl (106 kB)
00:32:57 Installing collected packages: markdown
00:32:57 Successfully installed markdown-3.8.2
00:32:57 + pip install reportlab
00:32:57 Collecting reportlab
00:32:57 Using cached reportlab-4.4.2-py3-none-any.whl.metadata (1.8 kB)
00:32:57 Collecting pillow>=9.0.0 (from reportlab)
00:32:57 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB)
00:32:58 Collecting charset-normalizer (from reportlab)
00:32:58 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
00:32:58 Using cached reportlab-4.4.2-py3-none-any.whl (2.0 MB)
00:32:58 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:32:58 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:32:58 Installing collected packages: pillow, charset-normalizer, reportlab
00:32:59
00:32:59 Successfully installed charset-normalizer-3.4.2 pillow-11.2.1 reportlab-4.4.2
00:32:59 + pip install pyarrow
00:32:59 Collecting pyarrow
00:32:59 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
00:32:59 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.3 MB)
00:32:59 Installing collected packages: pyarrow
00:33:01 Successfully installed pyarrow-20.0.0
00:33:01 + pip install omego
00:33:01 Collecting omego
00:33:01 Using cached omego-0.7.0-py3-none-any.whl
00:33:01 Collecting future (from omego)
00:33:01 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:33:01 Collecting yaclifw>=0.1.1 (from omego)
00:33:01 Using cached yaclifw-0.2.0-py3-none-any.whl
00:33:01 Collecting six (from yaclifw>=0.1.1->omego)
00:33:01 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:33:01 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:33:01 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:33:01 Installing collected packages: six, future, yaclifw, omego
00:33:02
00:33:02 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:33:02 + pip install tables
00:33:02 Collecting tables
00:33:02 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:33:02 Collecting numpy>=1.20.0 (from tables)
00:33:02 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
00:33:02 Collecting numexpr>=2.6.2 (from tables)
00:33:02 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:33:02 Collecting packaging (from tables)
00:33:02 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:33:02 Collecting py-cpuinfo (from tables)
00:33:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:33:02 Collecting blosc2>=2.3.0 (from tables)
00:33:02 Using cached blosc2-3.5.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.9 kB)
00:33:02 Collecting typing-extensions>=4.4.0 (from tables)
00:33:02 Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB)
00:33:03 Collecting ndindex (from blosc2>=2.3.0->tables)
00:33:03 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
00:33:03 Collecting msgpack (from blosc2>=2.3.0->tables)
00:33:03 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
00:33:03 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:33:03 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
00:33:03 Collecting requests (from blosc2>=2.3.0->tables)
00:33:03 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
00:33:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2)
00:33:03 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:33:03 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
00:33:03 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:33:03 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
00:33:03 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:33:03 Using cached certifi-2025.6.15-py3-none-any.whl.metadata (2.4 kB)
00:33:03 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:33:03 Using cached blosc2-3.5.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB)
00:33:03 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
00:33:03 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
00:33:03 Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB)
00:33:03 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB)
00:33:03 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
00:33:03 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:33:03 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
00:33:03 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:33:03 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:33:03 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:33:03 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:33:03 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB)
00:33:03 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:33:06
00:33:06 Successfully installed blosc2-3.5.0 certifi-2025.6.15 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.1 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.0 urllib3-2.5.0
00:33:06 + pip install jinja2
00:33:07 Collecting jinja2
00:33:07 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:33:07 Collecting MarkupSafe>=2.0 (from jinja2)
00:33:07 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
00:33:07 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:33:07 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
00:33:07 Installing collected packages: MarkupSafe, jinja2
00:33:09
00:33:09 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
00:33:09 + pip install omero-py
00:33:09 Collecting omero-py
00:33:09 Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB)
00:33:09 Collecting urllib3<2 (from omero-py)
00:33:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:33:09 Collecting appdirs (from omero-py)
00:33:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:33:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:33:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.1)
00:33:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.2.1)
00:33:09 Collecting PyYAML (from omero-py)
00:33:09 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:33:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:33:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
00:33:09 Collecting portalocker (from omero-py)
00:33:09 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:33:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
00:33:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
00:33:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.6.15)
00:33:10 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:33:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:33:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:33:10 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:33:10 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:33:10 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py
00:33:10 Attempting uninstall: urllib3
00:33:10 Found existing installation: urllib3 2.5.0
00:33:10 Uninstalling urllib3-2.5.0:
00:33:10 Successfully uninstalled urllib3-2.5.0
00:33:12
00:33:12 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.21.0 portalocker-3.2.0 urllib3-1.26.20
00:33:12 + pip install git+https://github.com/dominikl/omero-cli-zarr.git@extinfo#egg=omero-cli-zarr
00:33:12 Collecting omero-cli-zarr
00:33:12 Cloning https://github.com/dominikl/omero-cli-zarr.git (to revision extinfo) to /tmp/pip-install-_yisvee3/omero-cli-zarr_1f6368abc0a441d7933be87e664da228
00:33:12 Running command git clone --filter=blob:none --quiet https://github.com/dominikl/omero-cli-zarr.git /tmp/pip-install-_yisvee3/omero-cli-zarr_1f6368abc0a441d7933be87e664da228
00:33:13 Running command git checkout -b extinfo --track origin/extinfo
00:33:13 Switched to a new branch 'extinfo'
00:33:13 branch 'extinfo' set up to track 'origin/extinfo'.
00:33:13 Resolved https://github.com/dominikl/omero-cli-zarr.git to commit 38b38f9e1ebaab0a72ed370fc9378d86f2d9b2e8
00:33:13 Installing build dependencies: started
00:33:14 Installing build dependencies: finished with status 'done'
00:33:14 Getting requirements to build wheel: started
00:33:14 Getting requirements to build wheel: finished with status 'done'
00:33:14 Installing backend dependencies: started
00:33:15 Installing backend dependencies: finished with status 'done'
00:33:15 Preparing metadata (pyproject.toml): started
00:33:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.0)
00:33:16 Collecting ome-zarr>=0.5.0 (from omero-cli-zarr)
00:33:16 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
00:33:16 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.3.1)
00:33:16 Collecting dask (from ome-zarr>=0.5.0->omero-cli-zarr)
00:33:16 Using cached dask-2025.5.1-py3-none-any.whl.metadata (3.8 kB)
00:33:16 Collecting zarr<3,>=2.8.1 (from ome-zarr>=0.5.0->omero-cli-zarr)
00:33:16 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
00:33:16 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:16 Using cached fsspec-2025.5.1-py3-none-any.whl.metadata (11 kB)
00:33:16 Collecting aiohttp<4 (from ome-zarr>=0.5.0->omero-cli-zarr)
00:33:16 Using cached aiohttp-3.12.13-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB)
00:33:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.5.0->omero-cli-zarr) (2.32.4)
00:33:17 Collecting scikit-image (from ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
00:33:17 Collecting toolz (from ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)
00:33:17 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:33:17 Collecting aiosignal>=1.1.2 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached aiosignal-1.3.2-py2.py3-none-any.whl.metadata (3.8 kB)
00:33:17 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB)
00:33:17 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
00:33:17 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached multidict-6.6.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:33:17 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
00:33:17 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB)
00:33:17 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr>=0.5.0->omero-cli-zarr) (3.10)
00:33:17 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached asciitree-0.3.3-py3-none-any.whl
00:33:17 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:17 Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)
00:33:18 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
00:33:18 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB)
00:33:18 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached s3fs-2025.5.1-py3-none-any.whl.metadata (1.9 kB)
00:33:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.26.20)
00:33:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:33:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:33:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (11.2.1)
00:33:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.2)
00:33:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:33:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:33:18 Collecting click>=8.1 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached click-8.2.1-py3-none-any.whl.metadata (2.5 kB)
00:33:18 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB)
00:33:18 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr>=0.5.0->omero-cli-zarr) (25.0)
00:33:18 Collecting partd>=1.4.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:33:18 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB)
00:33:18 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:33:18 Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:33:18 Collecting wrapt<2,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
00:33:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (3.4.2)
00:33:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.5.0->omero-cli-zarr) (2025.6.15)
00:33:18 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached aiobotocore-2.23.0-py3-none-any.whl.metadata (24 kB)
00:33:18 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:18 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
00:33:19 Collecting botocore<1.38.28,>=1.38.23 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached botocore-1.38.27-py3-none-any.whl.metadata (5.7 kB)
00:33:19 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:33:19 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
00:33:19 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.5.0->omero-cli-zarr) (1.17.0)
00:33:19 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (61 kB)
00:33:19 Collecting networkx>=3.0 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB)
00:33:19 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB)
00:33:19 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached tifffile-2025.6.11-py3-none-any.whl.metadata (32 kB)
00:33:19 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr>=0.5.0->omero-cli-zarr)
00:33:19 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:33:19 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
00:33:19 Using cached aiohttp-3.12.13-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
00:33:19 Using cached multidict-6.6.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:33:19 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB)
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00:33:19 Using cached click-8.2.1-py3-none-any.whl (102 kB)
00:33:19 Using cached cloudpickle-3.1.1-py3-none-any.whl (20 kB)
00:33:19 Using cached importlib_metadata-8.7.0-py3-none-any.whl (27 kB)
00:33:19 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:33:19 Using cached toolz-1.0.0-py3-none-any.whl (56 kB)
00:33:19 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:33:19 Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB)
00:33:19 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
00:33:19 Using cached fasteners-0.19-py3-none-any.whl (18 kB)
00:33:19 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:33:19 Using cached s3fs-2025.5.1-py3-none-any.whl (30 kB)
00:33:19 Using cached aiobotocore-2.23.0-py3-none-any.whl (84 kB)
00:33:19 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB)
00:33:19 Using cached botocore-1.38.27-py3-none-any.whl (13.6 MB)
00:33:19 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
00:33:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:33:19 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB)
00:33:19 Using cached imageio-2.37.0-py3-none-any.whl (315 kB)
00:33:19 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:33:19 Using cached networkx-3.5-py3-none-any.whl (2.0 MB)
00:33:19 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (35.3 MB)
00:33:19 Using cached tifffile-2025.6.11-py3-none-any.whl (230 kB)
00:33:19 Building wheels for collected packages: omero-cli-zarr
00:33:19 Building wheel for omero-cli-zarr (pyproject.toml): started
00:33:21 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:33:21 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.0.2.dev452+g38b38f9-py3-none-any.whl size=31066 sha256=04f19432be458ad3991174ea0fa7a7baef2db3c9099b032f2e0d3f98f286c98e
00:33:21 Stored in directory: /tmp/pip-ephem-wheel-cache-b5qp0wq0/wheels/dd/b9/0c/0415f7fe907b9498563db54fc83efe934b62c0a5e710ef7b23
00:33:21 Successfully built omero-cli-zarr
00:33:21 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:33:31
00:33:31 Successfully installed aiobotocore-2.23.0 aiohappyeyeballs-2.6.1 aiohttp-3.12.13 aioitertools-0.12.0 aiosignal-1.3.2 asciitree-0.3.3 attrs-25.3.0 botocore-1.38.27 click-8.2.1 cloudpickle-3.1.1 dask-2025.5.1 deprecated-1.2.18 fasteners-0.19 frozenlist-1.7.0 fsspec-2025.5.1 imageio-2.37.0 importlib_metadata-8.7.0 jmespath-1.0.1 lazy-loader-0.4 locket-1.0.0 multidict-6.6.2 networkx-3.5 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.0.2.dev452+g38b38f9 partd-1.4.2 propcache-0.3.2 python-dateutil-2.9.0.post0 s3fs-2025.5.1 scikit-image-0.25.2 scipy-1.16.0 tifffile-2025.6.11 toolz-1.0.0 wrapt-1.17.2 yarl-1.20.1 zarr-2.18.7 zipp-3.23.0
00:33:32 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:33:32 Collecting omero-metadata
00:33:32 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-x_2o8uv6/omero-metadata_c394dfed20cf4017bc5de035da96d0b2
00:33:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-x_2o8uv6/omero-metadata_c394dfed20cf4017bc5de035da96d0b2
00:33:33 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a3991ef508af301d5225335f229bcc20e3174d0f
00:33:33 Installing build dependencies: started
00:33:34 Installing build dependencies: finished with status 'done'
00:33:34 Getting requirements to build wheel: started
00:33:34 Getting requirements to build wheel: finished with status 'done'
00:33:34 Preparing metadata (pyproject.toml): started
00:33:34 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0)
00:33:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
00:33:34 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:33:35 Collecting pandas (from omero-metadata)
00:33:35 Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB)
00:33:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
00:33:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:33:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:33:35 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.1)
00:33:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.2.1)
00:33:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:33:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4)
00:33:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:33:35 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
00:33:35 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
00:33:35 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:33:35 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:33:35 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:33:35 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
00:33:35 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:33:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2)
00:33:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
00:33:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.6.15)
00:33:35 Using cached pandas-2.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
00:33:35 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:33:35 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
00:33:35 Building wheels for collected packages: omero-metadata
00:33:35 Building wheel for omero-metadata (pyproject.toml): started
00:33:35 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:33:35 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=743f6837bfeb554660d57aea30b9663907caffb5f555710273037a7b2402bed8
00:33:35 Stored in directory: /tmp/pip-ephem-wheel-cache-xc_kkjvf/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:33:35 Successfully built omero-metadata
00:33:35 Installing collected packages: pytz, tzdata, pandas, omero-metadata
00:33:40
00:33:40 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.0 pytz-2025.2 tzdata-2025.2
00:33:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:33:40 Collecting omero-cli-render
00:33:40 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ib5nmhys/omero-cli-render_6592a8fb32484f2b8ddd2bd33a86b11b
00:33:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ib5nmhys/omero-cli-render_6592a8fb32484f2b8ddd2bd33a86b11b
00:33:41 Running command git checkout -b merge_ci --track origin/merge_ci
00:33:41 Switched to a new branch 'merge_ci'
00:33:41 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:33:41 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 584b008c9f696d9281784dbb859f1a2c9cf30efe
00:33:41 Installing build dependencies: started
00:33:42 Installing build dependencies: finished with status 'done'
00:33:42 Getting requirements to build wheel: started
00:33:43 Getting requirements to build wheel: finished with status 'done'
00:33:43 Preparing metadata (pyproject.toml): started
00:33:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
00:33:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0)
00:33:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
00:33:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:33:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:33:43 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.1)
00:33:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.2.1)
00:33:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:33:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4)
00:33:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:33:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2)
00:33:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
00:33:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.6.15)
00:33:43 Building wheels for collected packages: omero-cli-render
00:33:43 Building wheel for omero-cli-render (pyproject.toml): started
00:33:43 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:33:43 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=6201d1c4fbe75c5808aeb590abf12f08448ce643237f4678498bb2d3cad06157
00:33:43 Stored in directory: /tmp/pip-ephem-wheel-cache-lm4d1fdm/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:33:43 Successfully built omero-cli-render
00:33:43 Installing collected packages: omero-cli-render
00:33:43 Successfully installed omero-cli-render-0.8.2.dev0
00:33:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:33:44 Collecting omero-cli-duplicate
00:33:44 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-glet658a/omero-cli-duplicate_925f26aaed134a27b6ed4af1195761bf
00:33:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-glet658a/omero-cli-duplicate_925f26aaed134a27b6ed4af1195761bf
00:33:45 Running command git checkout -b merge_ci --track origin/merge_ci
00:33:45 Switched to a new branch 'merge_ci'
00:33:45 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:33:45 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0c2ecdb0e9ef43ae2bce72566dd18029d5b258c5
00:33:45 Installing build dependencies: started
00:33:46 Installing build dependencies: finished with status 'done'
00:33:46 Getting requirements to build wheel: started
00:33:46 Getting requirements to build wheel: finished with status 'done'
00:33:46 Preparing metadata (pyproject.toml): started
00:33:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:46 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0)
00:33:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
00:33:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:33:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:33:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.1)
00:33:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.2.1)
00:33:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
00:33:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:33:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
00:33:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:33:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
00:33:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
00:33:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.6.15)
00:33:46 Building wheels for collected packages: omero-cli-duplicate
00:33:46 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:33:47 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:33:47 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=3a11976681e26400f83aa41f4f2ffdc86d6c11058acf2f2de90618bfa28ff952
00:33:47 Stored in directory: /tmp/pip-ephem-wheel-cache-5wgwbfi2/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:33:47 Successfully built omero-cli-duplicate
00:33:47 Installing collected packages: omero-cli-duplicate
00:33:47 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:33:47 + pip install omero-certificates
00:33:47 Collecting omero-certificates
00:33:47 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:33:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0)
00:33:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
00:33:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:33:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:33:47 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.1)
00:33:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.2.1)
00:33:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
00:33:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:33:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
00:33:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:33:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
00:33:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
00:33:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.6.15)
00:33:47 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:33:47 Installing collected packages: omero-certificates
00:33:48 Successfully installed omero-certificates-0.4.0
00:33:48 + for x in *.tar.gz
00:33:48 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:33:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:33:48 Installing build dependencies: started
00:33:50 Installing build dependencies: finished with status 'done'
00:33:50 Getting requirements to build wheel: started
00:33:51 Getting requirements to build wheel: finished with status 'done'
00:33:51 Preparing metadata (pyproject.toml): started
00:33:51 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:51 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0)
00:33:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
00:33:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:33:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:33:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.1)
00:33:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.2.1)
00:33:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
00:33:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:33:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
00:33:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:33:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
00:33:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
00:33:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.6.15)
00:33:51 Building wheels for collected packages: omero-dropbox
00:33:51 Building wheel for omero-dropbox (pyproject.toml): started
00:33:51 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:33:51 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=f39c180f5b4c7ba78410c69588b4ded1438fe50535a4623d06c8215bf4c805af
00:33:51 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:33:51 Successfully built omero-dropbox
00:33:51 Installing collected packages: omero-dropbox
00:33:51 Successfully installed omero-dropbox-5.7.1.dev0
00:33:52 + for x in *.tar.gz
00:33:52 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:33:52 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:33:52 Installing build dependencies: started
00:33:53 Installing build dependencies: finished with status 'done'
00:33:53 Getting requirements to build wheel: started
00:33:53 Getting requirements to build wheel: finished with status 'done'
00:33:53 Preparing metadata (pyproject.toml): started
00:33:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:53 Building wheels for collected packages: omero_marshal
00:33:53 Building wheel for omero_marshal (pyproject.toml): started
00:33:54 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:33:54 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=0df4470ce611ef9724806f5bfb50177fb454d6da2d9ac938bbc3bd812ecacc55
00:33:54 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
00:33:54 Successfully built omero_marshal
00:33:54 Installing collected packages: omero_marshal
00:33:54 Successfully installed omero_marshal-0.9.1.dev0
00:33:54 + for x in *.tar.gz
00:33:54 + pip install -U omero_py-5.21.1.dev0.tar.gz
00:33:54 Processing ./omero_py-5.21.1.dev0.tar.gz
00:33:55 Installing build dependencies: started
00:33:56 Installing build dependencies: finished with status 'done'
00:33:56 Getting requirements to build wheel: started
00:33:56 Getting requirements to build wheel: finished with status 'done'
00:33:56 Preparing metadata (pyproject.toml): started
00:33:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:56 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20)
00:33:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4)
00:33:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0)
00:33:56 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.1)
00:33:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.2.1)
00:33:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2)
00:33:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5)
00:33:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4)
00:33:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0)
00:33:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.2)
00:33:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10)
00:33:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.6.15)
00:33:56 Building wheels for collected packages: omero-py
00:33:56 Building wheel for omero-py (pyproject.toml): started
00:33:57 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:33:57 Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783499 sha256=e88c52d18f4295a168745176c7781b326ebcffcd83f467f44af233861af3d748
00:33:57 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d
00:33:57 Successfully built omero-py
00:33:58 Installing collected packages: omero-py
00:33:58 Attempting uninstall: omero-py
00:33:58 Found existing installation: omero-py 5.21.0
00:33:58 Uninstalling omero-py-5.21.0:
00:33:58 Successfully uninstalled omero-py-5.21.0
00:34:00 Successfully installed omero-py-5.21.1.dev0
00:34:00 + for x in *.tar.gz
00:34:00 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:34:01 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:34:01 Installing build dependencies: started
00:34:01 Installing build dependencies: finished with status 'done'
00:34:01 Getting requirements to build wheel: started
00:34:02 Getting requirements to build wheel: finished with status 'done'
00:34:02 Preparing metadata (pyproject.toml): started
00:34:02 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:02 Building wheels for collected packages: omero-scripts
00:34:02 Building wheel for omero-scripts (pyproject.toml): started
00:34:02 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:34:02 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=0282cf8e099de3451aa29f1358f151ca1d2930e950b5e1869f13b42cf8c732bf
00:34:02 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:34:02 Successfully built omero-scripts
00:34:02 Installing collected packages: omero-scripts
00:34:03 Successfully installed omero-scripts-5.9.2.dev0
00:34:03 + for x in *.tar.gz
00:34:03 + pip install -U omero_web-5.29.2.dev0.tar.gz
00:34:03 Processing ./omero_web-5.29.2.dev0.tar.gz
00:34:03 Installing build dependencies: started
00:34:04 Installing build dependencies: finished with status 'done'
00:34:04 Getting requirements to build wheel: started
00:34:05 Getting requirements to build wheel: finished with status 'done'
00:34:05 Preparing metadata (pyproject.toml): started
00:34:05 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:05 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0)
00:34:05 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0)
00:34:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:34:05 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0)
00:34:05 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
00:34:05 Collecting django-pipeline (from omero-web==5.29.2.dev0)
00:34:05 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
00:34:05 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0)
00:34:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:34:05 Collecting django-csp (from omero-web==5.29.2.dev0)
00:34:05 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
00:34:05 Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0)
00:34:05 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
00:34:05 Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0)
00:34:05 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:34:05 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0)
00:34:05 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.2.1)
00:34:05 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2)
00:34:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0)
00:34:05 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0)
00:34:05 Collecting importlib-resources (from omero-web==5.29.2.dev0)
00:34:05 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:34:05 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
00:34:05 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
00:34:05 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
00:34:05 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
00:34:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20)
00:34:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4)
00:34:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0)
00:34:05 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.1)
00:34:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2)
00:34:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5)
00:34:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4)
00:34:05 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1)
00:34:06 Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0)
00:34:06 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:34:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.2)
00:34:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10)
00:34:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.6.15)
00:34:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:34:06 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
00:34:06 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
00:34:06 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:34:06 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:34:06 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
00:34:06 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
00:34:06 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
00:34:06 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
00:34:06 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:34:06 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:34:06 Building wheels for collected packages: omero-web
00:34:06 Building wheel for omero-web (pyproject.toml): started
00:34:07 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:34:07 Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=4ba9eaad483a1a207500e7c524439c3df5ab9a70eeb5ec9334bee6dfb18a3e0b
00:34:07 Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c
00:34:07 Successfully built omero-web
00:34:07 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
00:34:10
00:34:10 Successfully installed Django-4.2.23 asgiref-3.8.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
00:34:10 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:34:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:34:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:34:10 --2025-06-30 00:34:10-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:34:10 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.108.133, ...
00:34:10 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
00:34:10 HTTP request sent, awaiting response... 200 OK
00:34:10 Length: 125072 (122K) [text/plain]
00:34:10 Saving to: ‘Figure_To_Pdf.py’
00:34:10
00:34:10 0K .......... .......... .......... .......... .......... 40% 3.95M 0s
00:34:10 50K .......... .......... .......... .......... .......... 81% 13.8M 0s
00:34:10 100K .......... .......... .. 100% 4.28M=0.02s
00:34:10
00:34:10 2025-06-30 00:34:10 (5.69 MB/s) - ‘Figure_To_Pdf.py’ saved [125072/125072]
00:34:10
00:34:10 + chmod 755 Figure_To_Pdf.py
00:34:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:34:10 + omero config set omero.db.name OMERO-server
00:34:12 + omero config set omero.db.host pg
00:34:14 + omero config set omero.db.user postgres
00:34:16 + omero config set omero.data.dir /home/omero/omero-server-data
00:34:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:34:19 + omero config set omero.db.poolsize 25
00:34:21 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:34:23 + omero config set omero.security.trustStorePassword changeit
00:34:25 + omero config set omero.mail.config true
00:34:26 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:34:28 + omero config set omero.mail.host smtp.dundee.ac.uk
00:34:30 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:34:32 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:34:33 + omero certificates
00:34:35 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
00:34:35 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:34:35 + '[' false = true ']'
00:34:35 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:34:35 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:34:35 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG dbcommand => upgrade
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG dbhost => localhost
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG dbname => OMERO-server
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG dbpass => omero
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG dbuser => omero
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG rootpass => omero
00:34:35 2025-06-30 00:34:35,948 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:34:35 2025-06-30 00:34:35,948 [omego.extern] INFO Executing : omero version
00:34:37 OMERO.py version:
00:34:37 OMERO.server version:
00:34:37 5.6.3-569-b8528b6467-ice36-b455
00:34:37 5.21.1.dev0
00:34:37 2025-06-30 00:34:37,823 [omego.extern] INFO Completed [1.875 s]
00:34:37 2025-06-30 00:34:37,823 [omego.extern] DEBUG Using omero CLI from omero
00:34:37 2025-06-30 00:34:37,823 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:34:37 2025-06-30 00:34:37,823 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:34:37 2025-06-30 00:34:37,823 [omego.extern] INFO Executing : omero config get --show-password
00:34:39 2025-06-30 00:34:39,590 [omego.extern] INFO Completed [1.767 s]
00:34:39 2025-06-30 00:34:39,590 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:34:39 2025-06-30 00:34:39,590 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:34:39 2025-06-30 00:34:39,596 [omego.extern] INFO Completed [0.006 s]
00:34:39 2025-06-30 00:34:39,596 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n'
00:34:39 2025-06-30 00:34:39,597 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9
00:34:39
00:34:39 2025-06-30 00:34:39,597 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:34:39 2025-06-30 00:34:39,597 [omego.extern] INFO Executing : omero config get --show-password
00:34:41 2025-06-30 00:34:41,302 [omego.extern] INFO Completed [1.706 s]
00:34:41 2025-06-30 00:34:41,302 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:34:41 2025-06-30 00:34:41,302 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:34:41 2025-06-30 00:34:41,312 [omego.extern] INFO Completed [0.010 s]
00:34:41 2025-06-30 00:34:41,313 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:34:41 2025-06-30 00:34:41,313 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:34:41 2025-06-30 00:34:41,313 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:34:41 2025-06-30 00:34:41,313 [omego.extern] INFO Executing : omero config get --show-password
00:34:43 2025-06-30 00:34:43,022 [omego.extern] INFO Completed [1.710 s]
00:34:43 2025-06-30 00:34:43,023 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:34:43 2025-06-30 00:34:43,023 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:34:43 2025-06-30 00:34:43,034 [omego.extern] INFO Completed [0.011 s]
00:34:43 2025-06-30 00:34:43,034 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:34:43 2025-06-30 00:34:43,034 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:34:43 2025-06-30 00:34:43,036 [ omego.db] INFO Database is already at OMERO5.4__0
00:34:43 + export LANG=en_US.UTF-8
00:34:43 + LANG=en_US.UTF-8
00:34:43 + export LANGUAGE=en_US:en
00:34:43 + LANGUAGE=en_US:en
00:34:43 + export LC_ALL=en_US.UTF-8
00:34:43 + LC_ALL=en_US.UTF-8
00:34:43 + BUILD_ID=DONT_KILL_ME
00:34:43 + omero admin start
00:34:48 No descriptor given. Using etc/grid/default.xml
00:34:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:34:56 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:34:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:34:56 Waiting on startup. Use CTRL-C to exit
00:34:57 + omero admin waitup
00:34:58 Waiting on startup. Use CTRL-C to exit
00:34:58 + omero admin diagnostics
00:35:00
00:35:00 ================================================================================
00:35:00 OMERO Diagnostics (admin)
00:35:00 ================================================================================
00:35:00
00:35:00 Commands: java -version 11.0.25 (/usr/bin/java)
00:35:00 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:35:00 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:35:00 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:35:01 Commands: psql --version 16.9 (/usr/bin/psql)
00:35:01 Commands: openssl version 3.2.24 (/usr/bin/openssl)
00:35:01
00:35:01 Component: OMERO.py 5.21.1.dev0
00:35:01 Component: OMERO.server 5.6.3-569-b8528b6467-ice36-b455
00:35:01
00:35:01 Server: icegridnode running
00:35:01 Server: Blitz-0 active (pid = 98846, enabled)
00:35:01 Server: Indexer-0 activating (enabled)
00:35:01 Server: OMERO.Glacier2 active (pid = 98877, enabled)
00:35:01 Server: OMERO.IceStorm active (pid = 98904, enabled)
00:35:01 Server: Processor-0 active (pid = 98884, enabled)
00:35:01 Server: Tables-0 active (pid = 98900, enabled)
00:35:01
00:35:01 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:35:01 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1
00:35:01 Log files: DropBox.log n/a
00:35:01 Log files: FileServer.log n/a
00:35:01 Log files: Indexer-0.log 598 B
00:35:01 Log files: MonitorServer.log n/a
00:35:01 Log files: Processor-0.log 735 B
00:35:01 Log files: Tables-0.log 961 B
00:35:01 Log files: TestDropBox.log n/a
00:35:01 Log files: master.err empty
00:35:01 Log files: master.out 30.5 KB
00:35:01 Log files: Total size 0.07 MB
00:35:01
00:35:01
00:35:01 Environment:OMERO_HOME=(unset)
00:35:01 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:35:01 Environment:OMERO_NODE=(unset)
00:35:01 Environment:OMERO_MASTER=(unset)
00:35:01 Environment:OMERO_USERDIR=(unset)
00:35:01 Environment:OMERO_TMPDIR=(unset)
00:35:01 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:01 Environment:PYTHONPATH=(unset)
00:35:01 Environment:ICE_HOME=/opt/ice-3.6.5
00:35:01 Environment:LD_LIBRARY_PATH=(unset)
00:35:01 Environment:DYLD_LIBRARY_PATH=(unset)
00:35:01
00:35:01 OMERO SSL port:4064
00:35:01 OMERO TCP port:4063
00:35:01 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:35:01 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:35:01
00:35:01 JVM settings: Blitz-${index} -Xmx7200m
00:35:01 JVM settings: Indexer-${index} -Xmx4800m
00:35:01 JVM settings: PixelData-${index} -Xmx7200m
00:35:01 JVM settings: Repository-${index} -Xmx4800m
00:35:01
00:35:01 Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 30 June 2025 853cd40767733b115d47f7148cbc2d7d4535f9fb
00:35:01 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 30 June 2025 853cd40767733b115d47f7148cbc2d7d4535f9fb
00:35:01 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 30 June 2025 853cd40767733b115d47f7148cbc2d7d4535f9fb
00:35:01 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/ome-common.jar OME Common Java 6.0.27-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 30 June 2025 76f32f350932bcff4a0fefed544f505394f6c9a0
00:35:01 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:35:01 Jar: lib/server/omero-zarr-pixel-buffer-0.4.1.jar OMERO Zarr Pixel Buffer 0.4.1 7c2d45bab0b51137dada7abda144282d6dcc76e1
00:35:01 + deactivate
00:35:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:35:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:35:01 + export PATH
00:35:01 + unset _OLD_VIRTUAL_PATH
00:35:01 + '[' -n '' ']'
00:35:01 + hash -r
00:35:01 + '[' -n '' ']'
00:35:01 + unset VIRTUAL_ENV
00:35:01 + unset VIRTUAL_ENV_PROMPT
00:35:01 + '[' '!' '' = nondestructive ']'
00:35:01 + unset -f deactivate
00:35:01 Finished: SUCCESS
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