00:50:24 Started by upstream project "Trigger" build number 59
00:50:24 originally caused by:
00:50:24 Started by timer
00:50:24 Running as SYSTEM
00:50:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:50:25 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4968226792743297452.sh
00:50:25 + source /home/settings.env
00:50:25 ++ OMERO_DB_HOST=pg
00:50:25 ++ OMERO_DB_USER=postgres
00:50:25 ++ OMERO_DB_PASS=
00:50:25 ++ OMERO_ROOT_PASS=omero
00:50:25 ++ OMERO_DATA_DIR=/OMERO
00:50:25 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:50:25 + OMERO_DB_NAME=OMERO-server
00:50:25 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:50:25 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:25 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:25 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:50:25 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:50:25 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:50:25 ++ deactivate nondestructive
00:50:25 ++ '[' -n '' ']'
00:50:25 ++ '[' -n '' ']'
00:50:25 ++ hash -r
00:50:25 ++ '[' -n '' ']'
00:50:25 ++ unset VIRTUAL_ENV
00:50:25 ++ unset VIRTUAL_ENV_PROMPT
00:50:25 ++ '[' '!' nondestructive = nondestructive ']'
00:50:25 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:50:25 ++ export VIRTUAL_ENV
00:50:25 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:25 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:25 ++ export PATH
00:50:25 ++ '[' -n '' ']'
00:50:25 ++ '[' -z '' ']'
00:50:25 ++ _OLD_VIRTUAL_PS1=
00:50:25 ++ PS1='(.venv3) '
00:50:25 ++ export PS1
00:50:25 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:50:25 ++ export VIRTUAL_ENV_PROMPT
00:50:25 ++ hash -r
00:50:25 + omero admin stop
00:50:59 Server not running
00:50:59 + echo not running
00:50:59 not running
00:50:59 + sleep 5
00:51:04 + deactivate
00:51:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:51:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:04 + export PATH
00:51:04 + unset _OLD_VIRTUAL_PATH
00:51:04 + '[' -n '' ']'
00:51:04 + hash -r
00:51:04 + '[' -n '' ']'
00:51:04 + unset VIRTUAL_ENV
00:51:04 + unset VIRTUAL_ENV_PROMPT
00:51:04 + '[' '!' '' = nondestructive ']'
00:51:04 + unset -f deactivate
00:51:04 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:51:05 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:51:09 + '[' false = true ']'
00:51:09 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:51:09 Skipping PURGE_DATA:CleanDbAndRepo
00:51:09 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:51:11 Copied 1 artifact from "OMERO-build" build number 36
00:51:11 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 32
00:51:11 Copied 2 artifacts from "OMERO-build-build" build number 36
00:51:11 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 29
00:51:11 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4748067544776996744.sh
00:51:11 + source /home/settings.env
00:51:11 ++ OMERO_DB_HOST=pg
00:51:11 ++ OMERO_DB_USER=postgres
00:51:11 ++ OMERO_DB_PASS=
00:51:11 ++ OMERO_ROOT_PASS=omero
00:51:11 ++ OMERO_DATA_DIR=/OMERO
00:51:11 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:51:11 + OMERO_DB_NAME=OMERO-server
00:51:11 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:51:11 + mkdir -p /home/omero/omero-server-data
00:51:11 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:51:11 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:11 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:11 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:11 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:11 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:11 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:11 ++ ls OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:51:11 + ZIP=OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:51:11 + '[' '!' -z '' ']'
00:51:11 + DIST=OMERO.server-5.6.3-586-9f1be4320f-ice36-b36
00:51:11 + unzip OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:51:11 Archive: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/blitz/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/grid/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/profiles/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/error/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/grid/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/janelia/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/matplotlib/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/ncsa_paledit/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/seaborn/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/luts/wcif/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/analysis_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/annotation_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/export_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/figure_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/import_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/scripts/omero/util_scripts/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/server/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/share/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/share/licenses/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/misc/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__1/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__10/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__11/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__2/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__3/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__4/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__5/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__6/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__7/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__8/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3A__9/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3__4/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3__5/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3__6/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO3__7/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4.1__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4.2__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4.2__0/t/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4.3__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4.4__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO4__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.0__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.1__1/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.2__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__1/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__2/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__3/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/var/
00:51:11 creating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/var/tmp/
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/LICENSE.txt
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/backup.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/blitz/mail-senders.example
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/blitz/mail-server.example
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/build.properties
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/env.bat
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/env.sh
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/hibernate.properties
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/ice.config
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/logback-cli.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/logback-indexing-cli.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/logback-indexing.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/logback.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/mime.types
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/node1.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/node2.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/omero.properties
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/profiles/psql
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/rollover.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/Windows.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/error/maintainance.html
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/grid/README
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/grid/default.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/grid/templates.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/grid/windefault.xml
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/ice.config
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/internal.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/master.cfg
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/templates/robot.template
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/etc/testdropbox.config
00:51:11 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/history.rst
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/OMEZarrReader.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/accessors-smart.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/activation.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aggdesigner-algorithm.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aircompressor.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/antlr.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aopalliance.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/apiguardian-api.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/asm.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/avatica-core.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/avatica-metrics.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aws-java-sdk-core.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aws-java-sdk-kms.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/aws-java-sdk-s3.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/base.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-anim.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-awt-util.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-bridge.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-codec.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-constants.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-css.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-dom.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-ext.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-gvt.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-i18n.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-parser.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-script.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-shared-resources.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-svg-dom.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-svggen.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-transcoder.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-util.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/batik-xml.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/btm.jar
00:51:12 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/lib/client/calcite-core.jar
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00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/psql-footer.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/psql-header.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/schema.sql
00:51:14 inflating: OMERO.server-5.6.3-586-9f1be4320f-ice36-b36/sql/psql/OMERO5.4__0/views.sql
00:51:14 + rm -f OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:51:14 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-586-9f1be4320f-ice36-b36 /home/omero/workspace/OMERO-server/OMERO.server
00:51:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:14 --2026-01-28 00:51:14-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:15 HTTP request sent, awaiting response... 200 OK
00:51:15 Length: 889211 (868K) [application/java-archive]
00:51:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:51:15
00:51:15 0K .......... .......... .......... .......... .......... 5% 34.3M 0s
00:51:15 50K .......... .......... .......... .......... .......... 11% 3.59M 0s
00:51:15 100K .......... .......... .......... .......... .......... 17% 4.01M 0s
00:51:15 150K .......... .......... .......... .......... .......... 23% 33.5M 0s
00:51:15 200K .......... .......... .......... .......... .......... 28% 56.3M 0s
00:51:15 250K .......... .......... .......... .......... .......... 34% 66.6M 0s
00:51:15 300K .......... .......... .......... .......... .......... 40% 282M 0s
00:51:15 350K .......... .......... .......... .......... .......... 46% 4.69M 0s
00:51:15 400K .......... .......... .......... .......... .......... 51% 23.2M 0s
00:51:15 450K .......... .......... .......... .......... .......... 57% 266M 0s
00:51:15 500K .......... .......... .......... .......... .......... 63% 48.3M 0s
00:51:15 550K .......... .......... .......... .......... .......... 69% 72.8M 0s
00:51:15 600K .......... .......... .......... .......... .......... 74% 5.02M 0s
00:51:15 650K .......... .......... .......... .......... .......... 80% 22.1M 0s
00:51:15 700K .......... .......... .......... .......... .......... 86% 305M 0s
00:51:15 750K .......... .......... .......... .......... .......... 92% 50.1M 0s
00:51:15 800K .......... .......... .......... .......... .......... 97% 62.5M 0s
00:51:15 850K .......... ........ 100% 134M=0.06s
00:51:15
00:51:15 2026-01-28 00:51:15 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:51:15
00:51:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:51:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:15 --2026-01-28 00:51:15-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:51:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:15 HTTP request sent, awaiting response... 200 OK
00:51:15 Length: 73309 (72K) [application/java-archive]
00:51:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:51:15
00:51:15 0K .......... .......... .......... .......... .......... 69% 31.8M 0s
00:51:15 50K .......... .......... . 100% 1.69M=0.01s
00:51:15
00:51:15 2026-01-28 00:51:15 (4.99 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:51:15
00:51:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:51:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:15 --2026-01-28 00:51:15-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:51:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:51:16 HTTP request sent, awaiting response... 200 OK
00:51:16 Length: 63303 (62K) [application/java-archive]
00:51:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:51:16
00:51:16 0K .......... .......... .......... .......... .......... 80% 3.51M 0s
00:51:16 50K .......... . 100% 12.0M=0.01s
00:51:16
00:51:16 2026-01-28 00:51:16 (4.06 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:51:16
00:51:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:51:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:16 --2026-01-28 00:51:16-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:51:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:16 HTTP request sent, awaiting response... 200 OK
00:51:16 Length: 1271272 (1.2M) [application/java-archive]
00:51:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:51:16
00:51:16 0K .......... .......... .......... .......... .......... 4% 31.9M 0s
00:51:16 50K .......... .......... .......... .......... .......... 8% 3.63M 0s
00:51:16 100K .......... .......... .......... .......... .......... 12% 3.96M 0s
00:51:16 150K .......... .......... .......... .......... .......... 16% 39.3M 0s
00:51:16 200K .......... .......... .......... .......... .......... 20% 157M 0s
00:51:16 250K .......... .......... .......... .......... .......... 24% 45.3M 0s
00:51:16 300K .......... .......... .......... .......... .......... 28% 58.2M 0s
00:51:16 350K .......... .......... .......... .......... .......... 32% 4.80M 0s
00:51:16 400K .......... .......... .......... .......... .......... 36% 33.8M 0s
00:51:16 450K .......... .......... .......... .......... .......... 40% 59.6M 0s
00:51:16 500K .......... .......... .......... .......... .......... 44% 97.7M 0s
00:51:16 550K .......... .......... .......... .......... .......... 48% 69.2M 0s
00:51:16 600K .......... .......... .......... .......... .......... 52% 144M 0s
00:51:16 650K .......... .......... .......... .......... .......... 56% 4.03M 0s
00:51:16 700K .......... .......... .......... .......... .......... 60% 97.8M 0s
00:51:16 750K .......... .......... .......... .......... .......... 64% 126M 0s
00:51:16 800K .......... .......... .......... .......... .......... 68% 88.2M 0s
00:51:16 850K .......... .......... .......... .......... .......... 72% 40.9M 0s
00:51:16 900K .......... .......... .......... .......... .......... 76% 4.15M 0s
00:51:16 950K .......... .......... .......... .......... .......... 80% 180M 0s
00:51:16 1000K .......... .......... .......... .......... .......... 84% 241M 0s
00:51:16 1050K .......... .......... .......... .......... .......... 88% 53.7M 0s
00:51:16 1100K .......... .......... .......... .......... .......... 92% 48.2M 0s
00:51:16 1150K .......... .......... .......... .......... .......... 96% 4.39M 0s
00:51:16 1200K .......... .......... .......... .......... . 100% 87.6M=0.09s
00:51:16
00:51:16 2026-01-28 00:51:16 (14.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:51:16
00:51:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:51:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:16 --2026-01-28 00:51:16-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:51:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:16 HTTP request sent, awaiting response... 200 OK
00:51:16 Length: 1036468 (1012K) [application/java-archive]
00:51:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’
00:51:16
00:51:16 0K .......... .......... .......... .......... .......... 4% 3.30M 0s
00:51:16 50K .......... .......... .......... .......... .......... 9% 8.44M 0s
00:51:16 100K .......... .......... .......... .......... .......... 14% 4.57M 0s
00:51:16 150K .......... .......... .......... .......... .......... 19% 8.72M 0s
00:51:16 200K .......... .......... .......... .......... .......... 24% 13.2M 0s
00:51:16 250K .......... .......... .......... .......... .......... 29% 11.1M 0s
00:51:16 300K .......... .......... .......... .......... .......... 34% 17.0M 0s
00:51:16 350K .......... .......... .......... .......... .......... 39% 17.3M 0s
00:51:16 400K .......... .......... .......... .......... .......... 44% 25.3M 0s
00:51:16 450K .......... .......... .......... .......... .......... 49% 17.0M 0s
00:51:16 500K .......... .......... .......... .......... .......... 54% 11.7M 0s
00:51:16 550K .......... .......... .......... .......... .......... 59% 26.1M 0s
00:51:16 600K .......... .......... .......... .......... .......... 64% 17.1M 0s
00:51:16 650K .......... .......... .......... .......... .......... 69% 23.6M 0s
00:51:16 700K .......... .......... .......... .......... .......... 74% 17.9M 0s
00:51:16 750K .......... .......... .......... .......... .......... 79% 11.8M 0s
00:51:16 800K .......... .......... .......... .......... .......... 83% 24.9M 0s
00:51:16 850K .......... .......... .......... .......... .......... 88% 16.6M 0s
00:51:16 900K .......... .......... .......... .......... .......... 93% 13.6M 0s
00:51:16 950K .......... .......... .......... .......... .......... 98% 49.2M 0s
00:51:16 1000K .......... .. 100% 245M=0.08s
00:51:16
00:51:16 2026-01-28 00:51:16 (11.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ saved [1036468/1036468]
00:51:16
00:51:16 + for x in *.jar
00:51:16 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:51:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:51:16 ++ deactivate nondestructive
00:51:16 ++ '[' -n '' ']'
00:51:16 ++ '[' -n '' ']'
00:51:16 ++ hash -r
00:51:16 ++ '[' -n '' ']'
00:51:16 ++ unset VIRTUAL_ENV
00:51:16 ++ unset VIRTUAL_ENV_PROMPT
00:51:16 ++ '[' '!' nondestructive = nondestructive ']'
00:51:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:51:16 ++ export VIRTUAL_ENV
00:51:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:16 ++ export PATH
00:51:16 ++ '[' -n '' ']'
00:51:16 ++ '[' -z '' ']'
00:51:16 ++ _OLD_VIRTUAL_PS1=
00:51:16 ++ PS1='(.venv3) '
00:51:16 ++ export PS1
00:51:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:51:16 ++ export VIRTUAL_ENV_PROMPT
00:51:16 ++ hash -r
00:51:16 + pip install -U pip
00:51:17 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:51:17 Collecting pip
00:51:17 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:51:17 Installing collected packages: pip
00:51:17 Attempting uninstall: pip
00:51:17 Found existing installation: pip 22.3.1
00:51:17 Uninstalling pip-22.3.1:
00:51:17 Successfully uninstalled pip-22.3.1
00:51:18 Successfully installed pip-25.3
00:51:18 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:51:19 Collecting zeroc-ice==3.6.5
00:51:19 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:51:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.7 MB/s 0:00:01
00:51:21 Installing collected packages: zeroc-ice
00:51:22 Successfully installed zeroc-ice-3.6.5
00:51:22 + pip install markdown
00:51:22 Collecting markdown
00:51:22 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:51:22 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:51:22 Installing collected packages: markdown
00:51:22 Successfully installed markdown-3.10.1
00:51:22 + pip install reportlab
00:51:23 Collecting reportlab
00:51:23 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:51:23 Collecting pillow>=9.0.0 (from reportlab)
00:51:23 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:51:24 Collecting charset-normalizer (from reportlab)
00:51:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:51:24 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:51:24 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:51:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:51:24 Installing collected packages: pillow, charset-normalizer, reportlab
00:51:25
00:51:25 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:51:25 + pip install omego
00:51:25 Collecting omego
00:51:25 Using cached omego-0.7.0-py3-none-any.whl
00:51:26 Collecting future (from omego)
00:51:26 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:51:26 Collecting yaclifw>=0.1.1 (from omego)
00:51:26 Using cached yaclifw-0.2.0-py3-none-any.whl
00:51:26 Collecting six (from yaclifw>=0.1.1->omego)
00:51:26 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:51:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:51:26 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:51:26 Installing collected packages: six, future, yaclifw, omego
00:51:26
00:51:26 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:51:26 + pip install tables
00:51:27 Collecting tables
00:51:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:51:27 Collecting numpy>=1.20.0 (from tables)
00:51:27 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:51:27 Collecting numexpr>=2.6.2 (from tables)
00:51:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:51:27 Collecting packaging (from tables)
00:51:27 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:51:27 Collecting py-cpuinfo (from tables)
00:51:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:51:28 Collecting blosc2>=2.3.0 (from tables)
00:51:28 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
00:51:28 Collecting typing-extensions>=4.4.0 (from tables)
00:51:28 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:51:28 Collecting ndindex (from blosc2>=2.3.0->tables)
00:51:28 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:51:28 Collecting msgpack (from blosc2>=2.3.0->tables)
00:51:28 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:51:28 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:51:28 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
00:51:28 Collecting requests (from blosc2>=2.3.0->tables)
00:51:28 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:51:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:51:28 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:51:28 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:51:28 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:51:28 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:51:28 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:51:28 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:51:28 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:51:29 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
00:51:29 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:51:29 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
00:51:29 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:51:29 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:51:29 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:51:29 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:51:29 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
00:51:29 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:51:29 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:51:29 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:51:29 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:51:29 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:51:29 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:51:32
00:51:32 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-26.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:51:32 + pip install jinja2
00:51:33 Collecting jinja2
00:51:33 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:51:33 Collecting MarkupSafe>=2.0 (from jinja2)
00:51:33 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:51:33 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:51:33 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:51:33 Installing collected packages: MarkupSafe, jinja2
00:51:33
00:51:33 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:51:33 + pip install omero-py
00:51:34 Collecting omero-py
00:51:34 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:51:34 Collecting appdirs (from omero-py)
00:51:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:51:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:51:34 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
00:51:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:51:34 Collecting PyYAML (from omero-py)
00:51:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:51:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:51:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:51:34 Collecting portalocker (from omero-py)
00:51:34 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:51:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:51:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:51:34 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:51:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:51:34 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:51:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:51:34 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:51:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:51:35 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:51:37
00:51:37 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:51:37 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:51:38 Collecting omero-metadata
00:51:38 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-vr0ryapw/omero-metadata_94b11964bd5f44859fdcfe8e108f66aa
00:51:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-vr0ryapw/omero-metadata_94b11964bd5f44859fdcfe8e108f66aa
00:51:39 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9bf36071d659061051c5b19ef9717dc3013d9805
00:51:39 Installing build dependencies: started
00:51:40 Installing build dependencies: finished with status 'done'
00:51:40 Getting requirements to build wheel: started
00:51:40 Getting requirements to build wheel: finished with status 'done'
00:51:40 Preparing metadata (pyproject.toml): started
00:51:40 Preparing metadata (pyproject.toml): finished with status 'done'
00:51:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:51:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:51:40 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:51:41 Collecting pandas (from omero-metadata)
00:51:41 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:51:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:51:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:51:41 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
00:51:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:51:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:51:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:51:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:51:41 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:51:41 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:51:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:51:41 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:51:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:51:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:51:41 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:51:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:51:41 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:51:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:51:41 Building wheels for collected packages: omero-metadata
00:51:41 Building wheel for omero-metadata (pyproject.toml): started
00:51:41 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:51:41 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=497ef353c7dfbc5ecab6ded24b3b949d872f21870d7c165d969442e97f0e5483
00:51:41 Stored in directory: /tmp/pip-ephem-wheel-cache-61bz8wg8/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:51:41 Successfully built omero-metadata
00:51:41 Installing collected packages: python-dateutil, pandas, omero-metadata
00:51:46
00:51:46 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:51:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:51:46 Collecting omero-cli-render
00:51:46 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-lhcr01xt/omero-cli-render_15f9c80148fc4fffb3aef1809f2e1ba1
00:51:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-lhcr01xt/omero-cli-render_15f9c80148fc4fffb3aef1809f2e1ba1
00:51:47 Running command git checkout -b merge_ci --track origin/merge_ci
00:51:47 Switched to a new branch 'merge_ci'
00:51:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:51:47 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit e05b5eb00a8fbfafd052fe55c1c7438cd317f922
00:51:47 Installing build dependencies: started
00:51:48 Installing build dependencies: finished with status 'done'
00:51:48 Getting requirements to build wheel: started
00:51:48 Getting requirements to build wheel: finished with status 'done'
00:51:48 Preparing metadata (pyproject.toml): started
00:51:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:51:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:51:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:51:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:51:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:51:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
00:51:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:51:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:51:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:51:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:51:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:51:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:51:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:51:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:51:49 Building wheels for collected packages: omero-cli-render
00:51:49 Building wheel for omero-cli-render (pyproject.toml): started
00:51:49 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:51:49 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=1834ae48a2e4e59f460cd47f48e04ee49de9fdedc323ba34bad8522a58167be8
00:51:49 Stored in directory: /tmp/pip-ephem-wheel-cache-bb3xq2w5/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:51:49 Successfully built omero-cli-render
00:51:49 Installing collected packages: omero-cli-render
00:51:49 Successfully installed omero-cli-render-0.8.2.dev0
00:51:49 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:51:49 Collecting omero-cli-duplicate
00:51:49 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-zircv2hg/omero-cli-duplicate_b47d465171eb4518a37d9fdae1192626
00:51:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-zircv2hg/omero-cli-duplicate_b47d465171eb4518a37d9fdae1192626
00:51:51 Running command git checkout -b merge_ci --track origin/merge_ci
00:51:51 Switched to a new branch 'merge_ci'
00:51:51 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:51:51 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e71d80711543c7f8271f998c80e4dd60b7c0b932
00:51:51 Installing build dependencies: started
00:51:52 Installing build dependencies: finished with status 'done'
00:51:52 Getting requirements to build wheel: started
00:51:52 Getting requirements to build wheel: finished with status 'done'
00:51:52 Preparing metadata (pyproject.toml): started
00:51:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:51:52 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:51:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:51:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:51:52 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
00:51:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:51:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:51:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:51:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:51:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:51:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:51:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:51:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:51:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:51:52 Building wheels for collected packages: omero-cli-duplicate
00:51:52 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:51:52 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:51:52 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=e9038ddb429724c762d38fa73e959c5c29eb8bc2ebae9e2ceed162cb625ef3fa
00:51:52 Stored in directory: /tmp/pip-ephem-wheel-cache-gunjd3im/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:51:52 Successfully built omero-cli-duplicate
00:51:52 Installing collected packages: omero-cli-duplicate
00:51:52 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:51:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:51:53 Collecting omero-cli-zarr
00:51:53 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-8myzdoad/omero-cli-zarr_52f1082bac164a388a8fd31202e7cbae
00:51:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-8myzdoad/omero-cli-zarr_52f1082bac164a388a8fd31202e7cbae
00:51:56 Running command git checkout -b merge_ci --track origin/merge_ci
00:51:56 Switched to a new branch 'merge_ci'
00:51:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:51:56 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit e83c2eb834c963e7827c7cee88bbe03939358275
00:51:56 Installing build dependencies: started
00:51:57 Installing build dependencies: finished with status 'done'
00:51:57 Getting requirements to build wheel: started
00:51:57 Getting requirements to build wheel: finished with status 'done'
00:51:57 Installing backend dependencies: started
00:51:58 Installing backend dependencies: finished with status 'done'
00:51:58 Preparing metadata (pyproject.toml): started
00:51:59 Preparing metadata (pyproject.toml): finished with status 'done'
00:51:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:51:59 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:51:59 Using cached ome_zarr-0.12.2-py3-none-any.whl.metadata (2.9 kB)
00:51:59 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.1)
00:51:59 Collecting dask (from ome-zarr>=0.12.0->omero-cli-zarr)
00:51:59 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:51:59 Collecting zarr>=v3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:51:59 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:51:59 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:51:59 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
00:52:00 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:00 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:52:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:52:00 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:00 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:52:00 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:00 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:52:00 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:00 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB)
00:52:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:52:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:52:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:52:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
00:52:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:52:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:52:01 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:52:01 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:52:01 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:52:01 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached tifffile-2026.1.14-py3-none-any.whl.metadata (30 kB)
00:52:01 Requirement already satisfied: packaging>=21 in ./.venv3/lib64/python3.11/site-packages (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:52:01 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:52:01 Collecting donfig>=0.8 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:01 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:52:02 Collecting google-crc32c>=1.5 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:52:02 Collecting numcodecs>=0.14 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:52:02 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:52:02 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:52:02 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:52:02 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:52:02 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:02 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:52:03 Collecting multidict<7.0,>=4.5 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:52:03 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:52:03 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:52:03 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:52:03 Collecting click>=8.1 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:52:03 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:52:03 Collecting partd>=1.4.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:52:03 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:52:03 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:03 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:52:04 Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:04 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:52:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:52:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:52:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:52:04 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:04 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
00:52:04 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:04 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:52:04 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:04 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
00:52:04 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:52:04 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:04 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:52:05 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:05 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (9.0 kB)
00:52:05 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:52:05 Using cached ome_zarr-0.12.2-py3-none-any.whl (41 kB)
00:52:05 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
00:52:05 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:52:05 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:52:05 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:52:05 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:52:05 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:52:05 Using cached tifffile-2026.1.14-py3-none-any.whl (232 kB)
00:52:06 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:52:06 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:52:06 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:52:06 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:52:06 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:52:06 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:52:06 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:52:06 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:52:06 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:52:06 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:52:06 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:52:06 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:52:06 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:52:06 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:52:06 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:52:06 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:52:06 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:52:06 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:52:06 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:52:06 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:52:06 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
00:52:06 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB)
00:52:06 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:52:06 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
00:52:06 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:52:06 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:52:06 Building wheels for collected packages: omero-cli-zarr
00:52:06 Building wheel for omero-cli-zarr (pyproject.toml): started
00:52:07 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:52:07 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev137+ge83c2eb-py3-none-any.whl size=37767 sha256=cd6fed8682a5f6a511884f33559f3589e86c02d81ecbdc7ed2894be66a2ba74f
00:52:07 Stored in directory: /tmp/pip-ephem-wheel-cache-9p9j3rc4/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:52:07 Successfully built omero-cli-zarr
00:52:07 Installing collected packages: zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:52:17
00:52:17 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.1.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.12.2 omero-cli-zarr-0.5.5.dev137+ge83c2eb partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.14 toolz-1.1.0 wrapt-2.0.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:52:18 + pip install omero-certificates
00:52:18 Collecting omero-certificates
00:52:18 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:52:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:52:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:52:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:52:18 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
00:52:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:52:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:52:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:52:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:52:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:52:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:52:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:52:18 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:52:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:52:18 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:52:18 Installing collected packages: omero-certificates
00:52:18 Successfully installed omero-certificates-0.4.0
00:52:19 + for x in *.tar.gz
00:52:19 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:52:19 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:52:19 Installing build dependencies: started
00:52:20 Installing build dependencies: finished with status 'done'
00:52:20 Getting requirements to build wheel: started
00:52:20 Getting requirements to build wheel: finished with status 'done'
00:52:20 Preparing metadata (pyproject.toml): started
00:52:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:20 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:52:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:52:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:52:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
00:52:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:52:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:52:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:52:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:52:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:52:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:52:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:52:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:52:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:52:20 Building wheels for collected packages: omero-dropbox
00:52:20 Building wheel for omero-dropbox (pyproject.toml): started
00:52:20 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:52:20 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=ad1db62a11b30589d7c85c01d92608dc06255d3d717f23c09b8cd2d73c35b780
00:52:20 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:52:21 Successfully built omero-dropbox
00:52:21 Installing collected packages: omero-dropbox
00:52:21 Successfully installed omero-dropbox-5.7.1.dev0
00:52:21 + for x in *.tar.gz
00:52:21 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:52:21 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:52:21 Installing build dependencies: started
00:52:22 Installing build dependencies: finished with status 'done'
00:52:22 Getting requirements to build wheel: started
00:52:22 Getting requirements to build wheel: finished with status 'done'
00:52:22 Preparing metadata (pyproject.toml): started
00:52:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:23 Building wheels for collected packages: omero_marshal
00:52:23 Building wheel for omero_marshal (pyproject.toml): started
00:52:23 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:52:23 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88440 sha256=dc6b0ee1157cfc20d4bb4db4ec0f18f643a22e2a600c833e9af9e3d484963a35
00:52:23 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:52:23 Successfully built omero_marshal
00:52:23 Installing collected packages: omero_marshal
00:52:23 Successfully installed omero_marshal-0.9.2.dev0
00:52:23 + for x in *.tar.gz
00:52:23 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:52:23 Processing ./omero_py-5.22.0.dev0.tar.gz
00:52:24 Installing build dependencies: started
00:52:25 Installing build dependencies: finished with status 'done'
00:52:25 Getting requirements to build wheel: started
00:52:25 Getting requirements to build wheel: finished with status 'done'
00:52:25 Preparing metadata (pyproject.toml): started
00:52:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:52:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:52:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
00:52:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:52:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:52:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:52:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:52:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:52:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:52:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:52:25 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:52:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:52:25 Building wheels for collected packages: omero-py
00:52:25 Building wheel for omero-py (pyproject.toml): started
00:52:26 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:52:26 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786522 sha256=7b32b6873a1c959093b6cb5b244bc86c64ec25ef9aff87f2dc000d76bc47e6b3
00:52:26 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:52:26 Successfully built omero-py
00:52:26 Installing collected packages: omero-py
00:52:26 Attempting uninstall: omero-py
00:52:26 Found existing installation: omero-py 5.21.3
00:52:26 Uninstalling omero-py-5.21.3:
00:52:27 Successfully uninstalled omero-py-5.21.3
00:52:29 Successfully installed omero-py-5.22.0.dev0
00:52:29 + for x in *.tar.gz
00:52:29 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:52:29 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:52:29 Installing build dependencies: started
00:52:30 Installing build dependencies: finished with status 'done'
00:52:30 Getting requirements to build wheel: started
00:52:30 Getting requirements to build wheel: finished with status 'done'
00:52:30 Preparing metadata (pyproject.toml): started
00:52:31 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:31 Building wheels for collected packages: omero-scripts
00:52:31 Building wheel for omero-scripts (pyproject.toml): started
00:52:31 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:52:31 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136992 sha256=9b2efff197c0fb9f7b0937b8331e1644a5b86077e79f62cb19456b71c56c8b0b
00:52:31 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:52:31 Successfully built omero-scripts
00:52:31 Installing collected packages: omero-scripts
00:52:31 Successfully installed omero-scripts-5.9.2.dev0
00:52:31 + for x in *.tar.gz
00:52:31 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:52:31 Processing ./omero_web-5.30.2.dev0.tar.gz
00:52:32 Installing build dependencies: started
00:52:33 Installing build dependencies: finished with status 'done'
00:52:33 Getting requirements to build wheel: started
00:52:33 Getting requirements to build wheel: finished with status 'done'
00:52:33 Preparing metadata (pyproject.toml): started
00:52:33 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:33 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:52:33 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:52:33 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:52:34 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:52:34 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
00:52:34 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:52:34 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:52:34 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:52:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:52:34 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:52:34 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:52:34 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:52:34 Using cached gunicorn-24.1.1-py3-none-any.whl.metadata (4.6 kB)
00:52:34 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:52:34 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:52:34 Collecting pytz (from omero-web==5.30.2.dev0)
00:52:34 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:52:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:52:34 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:52:34 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:52:34 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:52:34 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:52:34 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:52:34 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:52:34 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:52:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:52:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:52:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
00:52:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:52:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:52:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:52:34 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:52:34 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:52:34 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:52:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:52:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:52:34 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:52:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:52:35 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:52:35 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
00:52:35 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:52:35 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:52:35 Using cached gunicorn-24.1.1-py3-none-any.whl (114 kB)
00:52:35 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:52:35 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:52:35 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:52:35 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:52:35 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:52:35 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:52:35 Building wheels for collected packages: omero-web
00:52:35 Building wheel for omero-web (pyproject.toml): started
00:52:36 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:52:36 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819259 sha256=09614e5a5dc22465cccfaa3fd1ea0b74f7cba8307e0c8bc2b7ff5a7716f0b159
00:52:36 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:52:36 Successfully built omero-web
00:52:36 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:52:39
00:52:39 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-24.1.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:52:39 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:52:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:39 --2026-01-28 00:52:39-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:52:39 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.110.133, ...
00:52:39 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
00:52:39 HTTP request sent, awaiting response... 200 OK
00:52:40 Length: 129235 (126K) [text/plain]
00:52:40 Saving to: ‘Figure_To_Pdf.py’
00:52:40
00:52:40 0K .......... .......... .......... .......... .......... 39% 4.09M 0s
00:52:40 50K .......... .......... .......... .......... .......... 79% 11.2M 0s
00:52:40 100K .......... .......... ...... 100% 5.24M=0.02s
00:52:40
00:52:40 2026-01-28 00:52:40 (5.82 MB/s) - ‘Figure_To_Pdf.py’ saved [129235/129235]
00:52:40
00:52:40 + chmod 755 Figure_To_Pdf.py
00:52:40 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:52:40 + omero config set omero.db.name OMERO-server
00:52:41 + omero config set omero.db.host pg
00:52:43 + omero config set omero.db.user postgres
00:52:45 + omero config set omero.data.dir /home/omero/omero-server-data
00:52:47 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:52:49 + omero config set omero.db.poolsize 25
00:52:51 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:52:53 + omero config set omero.security.trustStorePassword changeit
00:52:54 + omero config set omero.mail.config true
00:52:56 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:52:58 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:53:00 + omero certificates
00:53:02 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:53:02 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:53:02 + '[' false = true ']'
00:53:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:53:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:53:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:53:02 2026-01-28 00:53:02,576 [ omego.db] DEBUG dbcommand => upgrade
00:53:02 2026-01-28 00:53:02,576 [ omego.db] DEBUG dbhost => localhost
00:53:02 2026-01-28 00:53:02,577 [ omego.db] DEBUG dbname => OMERO-server
00:53:02 2026-01-28 00:53:02,577 [ omego.db] DEBUG dbpass => omero
00:53:02 2026-01-28 00:53:02,577 [ omego.db] DEBUG dbuser => omero
00:53:02 2026-01-28 00:53:02,577 [ omego.db] DEBUG rootpass => omero
00:53:02 2026-01-28 00:53:02,577 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:53:02 2026-01-28 00:53:02,577 [omego.extern] INFO Executing : omero version
00:53:04 OMERO.py version:
00:53:04 OMERO.server version:
00:53:04 5.6.3-586-9f1be4320f-ice36-b36
00:53:04 5.22.0.dev0
00:53:04 2026-01-28 00:53:04,546 [omego.extern] INFO Completed [1.969 s]
00:53:04 2026-01-28 00:53:04,546 [omego.extern] DEBUG Using omero CLI from omero
00:53:04 2026-01-28 00:53:04,547 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:53:04 2026-01-28 00:53:04,547 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:04 2026-01-28 00:53:04,547 [omego.extern] INFO Executing : omero config get --show-password
00:53:06 2026-01-28 00:53:06,395 [omego.extern] INFO Completed [1.848 s]
00:53:06 2026-01-28 00:53:06,395 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:06 2026-01-28 00:53:06,395 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:53:06 2026-01-28 00:53:06,660 [omego.extern] INFO Completed [0.265 s]
00:53:06 2026-01-28 00:53:06,660 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:53:06 2026-01-28 00:53:06,660 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:53:06
00:53:06 2026-01-28 00:53:06,660 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:06 2026-01-28 00:53:06,660 [omego.extern] INFO Executing : omero config get --show-password
00:53:08 2026-01-28 00:53:08,531 [omego.extern] INFO Completed [1.871 s]
00:53:08 2026-01-28 00:53:08,531 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:08 2026-01-28 00:53:08,531 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:53:08 2026-01-28 00:53:08,780 [omego.extern] INFO Completed [0.249 s]
00:53:08 2026-01-28 00:53:08,780 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n'
00:53:08 2026-01-28 00:53:08,780 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:08 2026-01-28 00:53:08,780 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:08 2026-01-28 00:53:08,780 [omego.extern] INFO Executing : omero config get --show-password
00:53:10 2026-01-28 00:53:10,653 [omego.extern] INFO Completed [1.872 s]
00:53:10 2026-01-28 00:53:10,653 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:10 2026-01-28 00:53:10,653 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:11 2026-01-28 00:53:11,646 [omego.extern] INFO Completed [0.993 s]
00:53:11 2026-01-28 00:53:11,646 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:53:11 2026-01-28 00:53:11,646 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:53:11 2026-01-28 00:53:11,648 [ omego.db] INFO Database is already at OMERO5.4__0
00:53:11 + export LANG=en_US.UTF-8
00:53:11 + LANG=en_US.UTF-8
00:53:11 + export LANGUAGE=en_US:en
00:53:11 + LANGUAGE=en_US:en
00:53:11 + export LC_ALL=en_US.UTF-8
00:53:11 + LC_ALL=en_US.UTF-8
00:53:11 + BUILD_ID=DONT_KILL_ME
00:53:11 + omero admin start
00:53:17 No descriptor given. Using etc/grid/default.xml
00:53:27 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:53:27 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:53:27 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:53:27 Waiting on startup. Use CTRL-C to exit
00:53:27 + omero admin waitup
00:53:29 Waiting on startup. Use CTRL-C to exit
00:53:29 + omero admin diagnostics
00:53:31
00:53:31 ================================================================================
00:53:31 OMERO Diagnostics (admin)
00:53:31 ================================================================================
00:53:31
00:53:31 Commands: java -version 17.0.17 (/usr/bin/java)
00:53:31 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:53:31 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:53:31 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:53:31 Commands: psql --version 16.11 (/usr/bin/psql)
00:53:31 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:53:31
00:53:31 Component: OMERO.py 5.22.0.dev0
00:53:31 Component: OMERO.server 5.6.3-586-9f1be4320f-ice36-b36
00:53:31
00:53:31 Server: icegridnode running
00:53:31 Server: Blitz-0 active (pid = 3311, enabled)
00:53:31 Server: Indexer-0 activating (enabled)
00:53:31 Server: OMERO.Glacier2 active (pid = 3343, enabled)
00:53:31 Server: OMERO.IceStorm active (pid = 3371, enabled)
00:53:31 Server: Processor-0 active (pid = 3384, enabled)
00:53:31 Server: Tables-0 active (pid = 3396, enabled)
00:53:31
00:53:31 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:53:31 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1
00:53:31 Log files: DropBox.log n/a
00:53:31 Log files: FileServer.log n/a
00:53:31 Log files: Indexer-0.log 598 B
00:53:31 Log files: MonitorServer.log n/a
00:53:31 Log files: Processor-0.log 735 B
00:53:31 Log files: Tables-0.log 961 B
00:53:31 Log files: TestDropBox.log n/a
00:53:31 Log files: master.err empty
00:53:31 Log files: master.out 30.5 KB
00:53:31 Log files: Total size 0.07 MB
00:53:31
00:53:31
00:53:31 Environment:OMERO_HOME=(unset)
00:53:31 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:53:31 Environment:OMERO_NODE=(unset)
00:53:31 Environment:OMERO_MASTER=(unset)
00:53:31 Environment:OMERO_USERDIR=(unset)
00:53:31 Environment:OMERO_TMPDIR=(unset)
00:53:31 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:53:31 Environment:PYTHONPATH=(unset)
00:53:31 Environment:ICE_HOME=/opt/ice-3.6.5
00:53:31 Environment:LD_LIBRARY_PATH=(unset)
00:53:31 Environment:DYLD_LIBRARY_PATH=(unset)
00:53:31
00:53:31 OMERO SSL port:4064
00:53:31 OMERO TCP port:4063
00:53:31 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:53:31 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:53:31
00:53:31 JVM settings: Blitz-${index} -Xmx7200m
00:53:31 JVM settings: Indexer-${index} -Xmx4800m
00:53:31 JVM settings: PixelData-${index} -Xmx7200m
00:53:31 JVM settings: Repository-${index} -Xmx4800m
00:53:31
00:53:31 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 28 January 2026 510f6a54e8e55edc7d7750204fd19c61cf6903ab
00:53:31 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 28 January 2026 510f6a54e8e55edc7d7750204fd19c61cf6903ab
00:53:31 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 28 January 2026 510f6a54e8e55edc7d7750204fd19c61cf6903ab
00:53:31 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 28 January 2026 ed306fc777f117ba1ce46abc2151b2b07cc180d7
00:53:31 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:53:31 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:53:31 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT c5006bd6526c5d5520bceb373671a59605bb2405
00:53:32 + deactivate
00:53:32 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:53:32 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:53:32 + export PATH
00:53:32 + unset _OLD_VIRTUAL_PATH
00:53:32 + '[' -n '' ']'
00:53:32 + hash -r
00:53:32 + '[' -n '' ']'
00:53:32 + unset VIRTUAL_ENV
00:53:32 + unset VIRTUAL_ENV_PROMPT
00:53:32 + '[' '!' '' = nondestructive ']'
00:53:32 + unset -f deactivate
00:53:32 Finished: SUCCESS
