20:36:35 Started by user devspace
20:36:35 Running as SYSTEM
20:36:35 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
20:36:35 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9437660416805417546.sh
20:36:35 + source /home/settings.env
20:36:35 ++ OMERO_DB_HOST=pg
20:36:35 ++ OMERO_DB_USER=postgres
20:36:35 ++ OMERO_DB_PASS=
20:36:35 ++ OMERO_ROOT_PASS=omero
20:36:35 ++ OMERO_DATA_DIR=/OMERO
20:36:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:36:35 + OMERO_DB_NAME=OMERO-server
20:36:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:36:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:36:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:36:35 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:36:35 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
20:36:35 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:36:35 ++ deactivate nondestructive
20:36:35 ++ '[' -n '' ']'
20:36:35 ++ '[' -n '' ']'
20:36:35 ++ '[' -n /bin/bash -o -n '' ']'
20:36:35 ++ hash -r
20:36:35 ++ '[' -n '' ']'
20:36:35 ++ unset VIRTUAL_ENV
20:36:35 ++ '[' '!' nondestructive = nondestructive ']'
20:36:35 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:36:35 ++ export VIRTUAL_ENV
20:36:35 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:36:35 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:36:35 ++ export PATH
20:36:35 ++ '[' -n '' ']'
20:36:35 ++ '[' -z '' ']'
20:36:35 ++ _OLD_VIRTUAL_PS1=
20:36:35 ++ PS1='(.venv3) '
20:36:35 ++ export PS1
20:36:35 ++ '[' -n /bin/bash -o -n '' ']'
20:36:35 ++ hash -r
20:36:35 + omero admin stop
20:36:36 Server not running
20:36:36 + echo not running
20:36:36 not running
20:36:36 + sleep 5
20:36:41 + deactivate
20:36:41 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:36:41 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:36:41 + export PATH
20:36:41 + unset _OLD_VIRTUAL_PATH
20:36:41 + '[' -n '' ']'
20:36:41 + '[' -n /bin/bash -o -n '' ']'
20:36:41 + hash -r
20:36:41 + '[' -n '' ']'
20:36:41 + unset VIRTUAL_ENV
20:36:41 + '[' '!' '' = nondestructive ']'
20:36:41 + unset -f deactivate
20:36:41 + rm -rf /home/omero/workspace/OMERO-server/.venv3
20:36:41 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
20:36:44 + '[' false = true ']'
20:36:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
20:36:44 Skipping PURGE_DATA:CleanDbAndRepo
20:36:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
20:36:47 Copied 1 artifact from "OMERO-build" build number 48
20:36:47 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 48
20:36:47 Copied 2 artifacts from "OMERO-build-build" build number 49
20:36:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6986415749210029728.sh
20:36:47 + source /home/settings.env
20:36:47 ++ OMERO_DB_HOST=pg
20:36:47 ++ OMERO_DB_USER=postgres
20:36:47 ++ OMERO_DB_PASS=
20:36:47 ++ OMERO_ROOT_PASS=omero
20:36:47 ++ OMERO_DATA_DIR=/OMERO
20:36:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:36:47 + OMERO_DB_NAME=OMERO-server
20:36:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:36:47 + mkdir -p /home/omero/omero-server-data
20:36:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:36:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:36:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:36:47 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:36:47 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:36:47 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:36:47 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:36:47 ++ ls OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:36:47 + ZIP=OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:36:47 + '[' '!' -z '' ']'
20:36:47 + DIST=OMERO.server-5.6.3-458-da8aba771d-ice36
20:36:47 + unzip OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:36:47 Archive: OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/grid/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/janelia/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/ncsa_paledit/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/wcif/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/analysis_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/annotation_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/export_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/figure_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/import_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/util_scripts/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__10/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__2/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__5/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__6/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__7/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__8/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__9/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__4/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__5/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__6/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__7/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/
20:36:47 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/var/
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/LICENSE.txt
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/backup.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-senders.example
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-server.example
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/build.properties
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.bat
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.sh
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/hibernate.properties
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/ice.config
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-cli.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing-cli.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/mime.types
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node1.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node2.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/omero.properties
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/psql
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/rollover.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/Windows.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/maintainance.html
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/README
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/default.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/templates.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/windefault.xml
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/ice.config
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/internal.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/master.cfg
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/robot.template
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/testdropbox.config
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/history.rst
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/OMEZarrReader.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/activation.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aggdesigner-algorithm.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aircompressor.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/annotations.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/antlr.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aopalliance.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-core.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-metrics.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-core.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-kms.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-s3.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/base.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-all.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-anim.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-awt-util.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-bridge.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-codec.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-constants.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-css.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-dom.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ext.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-extension.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gui-util.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gvt.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-i18n.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-parser.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer-ext.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-script.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-slideshow.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle-ext.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svg-dom.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgbrowser.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svggen.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgpp.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgrasterizer.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-swing.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-transcoder.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ttf2svg.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-util.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-xml.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/btm.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/bufr.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/c3p0.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-core.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-linq4j.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/cdm-core.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/checker-qual.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-beanutils.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-codec.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections.jar
20:36:47 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections4.jar
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20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/sketches-core.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/slf4j-api.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/snakeyaml.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-analysis-extras.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-commons-csv.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-core.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-solrj.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/specification.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-aop.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-beans.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-context-support.jar
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20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-expression.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-jdbc.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-jms.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-ldap-core.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-messaging.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-orm.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-security-core.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-security-ldap.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-tx.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/sqlite-jdbc.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/subethasmtp.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/turbojpeg.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/udunits.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xalan.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xercesImpl.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xml-apis-ext.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xml-apis.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xmlgraphics-commons.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xmpcore.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xpp3.jar
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/README
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/agpl.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/antlr.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/apache-v1.1.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/apache-v2.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/asm.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/bouncy_castle_license.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/bsd.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/cddl-v1.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/cpl-v10.html
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/crystalclear.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/django.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/dom4j.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/epl-v1.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/fbsd.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/freemarker.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gpl-v2.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gpl.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gtest.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/iconsweets_license.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jamon.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jmock.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jquery.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jtidy.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-3.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v2.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v2.1.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v3.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/matplotlib.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/mit.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/mpl-v1_0.htm
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/npl-1_1.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/path.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/pil.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/postgresql.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.0.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.5.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/scons.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/slf4j.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/tablelayout.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/which.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zlib-libpng.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zpl-v2.1.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/README.txt
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/Makefile
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/current.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/enums.py
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-header.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/schema.sql
20:36:49 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/views.sql
20:36:49 + rm -f OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:36:49 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-458-da8aba771d-ice36 /home/omero/workspace/OMERO-server/OMERO.server
20:36:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:36:49 ++ deactivate nondestructive
20:36:49 ++ '[' -n '' ']'
20:36:49 ++ '[' -n '' ']'
20:36:49 ++ '[' -n /bin/bash -o -n '' ']'
20:36:49 ++ hash -r
20:36:49 ++ '[' -n '' ']'
20:36:49 ++ unset VIRTUAL_ENV
20:36:49 ++ '[' '!' nondestructive = nondestructive ']'
20:36:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:36:49 ++ export VIRTUAL_ENV
20:36:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:36:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:36:49 ++ export PATH
20:36:49 ++ '[' -n '' ']'
20:36:49 ++ '[' -z '' ']'
20:36:49 ++ _OLD_VIRTUAL_PS1=
20:36:49 ++ PS1='(.venv3) '
20:36:49 ++ export PS1
20:36:49 ++ '[' -n /bin/bash -o -n '' ']'
20:36:49 ++ hash -r
20:36:49 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
20:36:50 Collecting zeroc-ice==3.6.5
20:36:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
20:36:53 Installing collected packages: zeroc-ice
20:36:54 Successfully installed zeroc-ice-3.6.5
20:36:54 + pip install -U pip future
20:36:54 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
20:36:54 Collecting pip
20:36:55 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
20:36:55 Collecting future
20:36:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
20:36:55 Installing collected packages: pip, future
20:36:55 Attempting uninstall: pip
20:36:55 Found existing installation: pip 21.2.3
20:36:55 Uninstalling pip-21.2.3:
20:36:55 Successfully uninstalled pip-21.2.3
20:36:56 Successfully installed future-1.0.0 pip-24.0
20:36:56 + pip install markdown
20:36:57 Collecting markdown
20:36:57 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
20:36:57 Collecting importlib-metadata>=4.4 (from markdown)
20:36:57 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
20:36:57 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
20:36:57 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
20:36:57 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
20:36:57 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
20:36:57 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
20:36:57 Installing collected packages: zipp, importlib-metadata, markdown
20:36:57 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
20:36:57 + pip install reportlab
20:36:58 Collecting reportlab
20:36:58 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB)
20:36:58 Collecting pillow>=9.0.0 (from reportlab)
20:36:58 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
20:36:58 Collecting chardet (from reportlab)
20:36:58 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
20:36:58 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB)
20:36:58 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
20:36:58 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
20:36:58 Installing collected packages: pillow, chardet, reportlab
20:36:59 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0
20:37:00 + pip install omego
20:37:00 Collecting omego
20:37:00 Using cached omego-0.7.0-py3-none-any.whl
20:37:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
20:37:00 Collecting yaclifw>=0.1.1 (from omego)
20:37:00 Using cached yaclifw-0.2.0-py3-none-any.whl
20:37:00 Collecting six (from yaclifw>=0.1.1->omego)
20:37:00 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
20:37:00 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
20:37:00 Installing collected packages: six, yaclifw, omego
20:37:00 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
20:37:00 + pip install tables
20:37:01 Collecting tables
20:37:01 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
20:37:01 Collecting numpy>=1.19.0 (from tables)
20:37:01 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
20:37:01 Collecting numexpr>=2.6.2 (from tables)
20:37:01 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
20:37:01 Collecting packaging (from tables)
20:37:01 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
20:37:01 Collecting py-cpuinfo (from tables)
20:37:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
20:37:02 Collecting blosc2>=2.3.0 (from tables)
20:37:02 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
20:37:02 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
20:37:02 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
20:37:02 Collecting msgpack (from blosc2>=2.3.0->tables)
20:37:02 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
20:37:02 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
20:37:02 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
20:37:02 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
20:37:02 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
20:37:02 Using cached packaging-24.0-py3-none-any.whl (53 kB)
20:37:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
20:37:02 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
20:37:02 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
20:37:02 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
20:37:05 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
20:37:05 + pip install jinja2
20:37:06 Collecting jinja2
20:37:06 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
20:37:06 Collecting MarkupSafe>=2.0 (from jinja2)
20:37:06 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
20:37:06 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
20:37:06 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
20:37:06 Installing collected packages: MarkupSafe, jinja2
20:37:06 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
20:37:06 + pip install omero-py
20:37:07 Collecting omero-py
20:37:07 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB)
20:37:07 Collecting urllib3<2 (from omero-py)
20:37:07 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
20:37:07 Collecting appdirs (from omero-py)
20:37:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
20:37:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
20:37:07 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
20:37:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
20:37:07 Collecting PyYAML (from omero-py)
20:37:07 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
20:37:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
20:37:07 Collecting requests (from omero-py)
20:37:07 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
20:37:07 Collecting portalocker (from omero-py)
20:37:07 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
20:37:07 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
20:37:07 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
20:37:07 Collecting idna<4,>=2.5 (from requests->omero-py)
20:37:07 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
20:37:07 Collecting certifi>=2017.4.17 (from requests->omero-py)
20:37:07 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
20:37:07 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB)
20:37:07 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
20:37:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
20:37:07 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
20:37:07 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
20:37:07 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
20:37:07 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
20:37:07 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
20:37:07 Using cached idna-3.7-py3-none-any.whl (66 kB)
20:37:07 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
20:37:09 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
20:37:10 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
20:37:10 Collecting omero-metadata
20:37:10 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-datdvj0n/omero-metadata_1b275d9001254f549291d237bebe7416
20:37:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-datdvj0n/omero-metadata_1b275d9001254f549291d237bebe7416
20:37:11 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit dac98655f76cdf25be7dc6319cc675b90ef5b1a1
20:37:11 Installing build dependencies: started
20:37:13 Installing build dependencies: finished with status 'done'
20:37:13 Getting requirements to build wheel: started
20:37:13 Getting requirements to build wheel: finished with status 'done'
20:37:13 Installing backend dependencies: started
20:37:14 Installing backend dependencies: finished with status 'done'
20:37:14 Preparing metadata (pyproject.toml): started
20:37:14 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2)
20:37:14 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
20:37:14 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
20:37:14 Collecting pandas (from omero-metadata)
20:37:14 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
20:37:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
20:37:14 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
20:37:14 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
20:37:14 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
20:37:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
20:37:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
20:37:14 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
20:37:14 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
20:37:14 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
20:37:14 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
20:37:14 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
20:37:14 Collecting pytz>=2020.1 (from pandas->omero-metadata)
20:37:14 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
20:37:14 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
20:37:14 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
20:37:14 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
20:37:14 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
20:37:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
20:37:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
20:37:14 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
20:37:14 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
20:37:14 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
20:37:14 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
20:37:15 Building wheels for collected packages: omero-metadata
20:37:15 Building wheel for omero-metadata (pyproject.toml): started
20:37:15 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
20:37:15 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=f93625359a5d6a5e59f7566aaaccf9979e8be8950b733f88f2d8b21614c8aaf2
20:37:15 Stored in directory: /tmp/pip-ephem-wheel-cache-lmafbsjm/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
20:37:15 Successfully built omero-metadata
20:37:15 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
20:37:20 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
20:37:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
20:37:20 Collecting omero-cli-render
20:37:20 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-4pzmkhot/omero-cli-render_a4b7d6e4e9114eecad9876a020e00ad3
20:37:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-4pzmkhot/omero-cli-render_a4b7d6e4e9114eecad9876a020e00ad3
20:37:21 Running command git checkout -b merge_ci --track origin/merge_ci
20:37:22 Switched to a new branch 'merge_ci'
20:37:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:37:22 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 65fb948a5d5013aafdf54e9f53561dda61855e8b
20:37:22 Installing build dependencies: started
20:37:23 Installing build dependencies: finished with status 'done'
20:37:23 Getting requirements to build wheel: started
20:37:24 Getting requirements to build wheel: finished with status 'done'
20:37:24 Installing backend dependencies: started
20:37:24 Installing backend dependencies: finished with status 'done'
20:37:24 Preparing metadata (pyproject.toml): started
20:37:25 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
20:37:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2)
20:37:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
20:37:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
20:37:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
20:37:25 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
20:37:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
20:37:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
20:37:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
20:37:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
20:37:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
20:37:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
20:37:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
20:37:25 Building wheels for collected packages: omero-cli-render
20:37:25 Building wheel for omero-cli-render (pyproject.toml): started
20:37:25 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
20:37:25 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=fe32c2fb590d0325005907de9f0b644831b78a1569fa0c7d06db9cb2568a00e2
20:37:25 Stored in directory: /tmp/pip-ephem-wheel-cache-vw1_75gv/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
20:37:25 Successfully built omero-cli-render
20:37:25 Installing collected packages: omero-cli-render
20:37:25 Successfully installed omero-cli-render-0.8.1.dev0
20:37:25 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
20:37:26 Collecting omero-cli-duplicate
20:37:26 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-560pl7dh/omero-cli-duplicate_bb3d1013c1d648429bda1da61277f03f
20:37:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-560pl7dh/omero-cli-duplicate_bb3d1013c1d648429bda1da61277f03f
20:37:27 Running command git checkout -b merge_ci --track origin/merge_ci
20:37:27 Switched to a new branch 'merge_ci'
20:37:27 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:37:27 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 48685a845b3a0e5d45076fad08a70428788f6337
20:37:27 Installing build dependencies: started
20:37:29 Installing build dependencies: finished with status 'done'
20:37:29 Getting requirements to build wheel: started
20:37:29 Getting requirements to build wheel: finished with status 'done'
20:37:29 Installing backend dependencies: started
20:37:30 Installing backend dependencies: finished with status 'done'
20:37:30 Preparing metadata (pyproject.toml): started
20:37:30 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:30 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2)
20:37:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
20:37:30 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
20:37:30 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
20:37:30 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
20:37:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
20:37:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
20:37:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
20:37:30 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
20:37:30 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
20:37:30 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
20:37:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
20:37:30 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
20:37:30 Building wheels for collected packages: omero-cli-duplicate
20:37:30 Building wheel for omero-cli-duplicate (pyproject.toml): started
20:37:30 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
20:37:30 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=d6d91c7218a36a45daa7f2653d7b28c2e3448462ac9b39e9c3bd6fddd2b925be
20:37:30 Stored in directory: /tmp/pip-ephem-wheel-cache-f55obdw9/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
20:37:30 Successfully built omero-cli-duplicate
20:37:31 Installing collected packages: omero-cli-duplicate
20:37:31 Successfully installed omero-cli-duplicate-0.4.1.dev0
20:37:31 + pip install omero-certificates
20:37:31 Collecting omero-certificates
20:37:31 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
20:37:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2)
20:37:31 Collecting distro==1.8.0 (from omero-certificates)
20:37:31 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
20:37:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
20:37:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
20:37:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
20:37:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
20:37:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
20:37:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
20:37:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
20:37:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
20:37:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
20:37:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
20:37:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
20:37:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
20:37:31 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
20:37:31 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
20:37:31 Installing collected packages: distro, omero-certificates
20:37:31 Successfully installed distro-1.8.0 omero-certificates-0.3.2
20:37:32 + for x in *.tar.gz
20:37:32 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz
20:37:32 Processing ./omero_dropbox-5.6.3.dev0.tar.gz
20:37:32 Installing build dependencies: started
20:37:34 Installing build dependencies: finished with status 'done'
20:37:34 Getting requirements to build wheel: started
20:37:34 Getting requirements to build wheel: finished with status 'done'
20:37:34 Installing backend dependencies: started
20:37:35 Installing backend dependencies: finished with status 'done'
20:37:35 Preparing metadata (pyproject.toml): started
20:37:35 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:35 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.2)
20:37:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
20:37:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
20:37:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
20:37:35 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
20:37:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0)
20:37:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
20:37:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
20:37:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
20:37:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
20:37:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
20:37:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7)
20:37:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
20:37:35 Building wheels for collected packages: omero-dropbox
20:37:35 Building wheel for omero-dropbox (pyproject.toml): started
20:37:35 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
20:37:35 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=ec65e854ba72007dd188cc4398ee957b5d143e8ee0a2d72eb9370af63c5bb9a8
20:37:35 Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6
20:37:35 Successfully built omero-dropbox
20:37:35 Installing collected packages: omero-dropbox
20:37:35 Successfully installed omero-dropbox-5.6.3.dev0
20:37:35 + for x in *.tar.gz
20:37:35 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
20:37:36 Processing ./omero_marshal-0.9.1.dev0.tar.gz
20:37:36 Installing build dependencies: started
20:37:38 Installing build dependencies: finished with status 'done'
20:37:38 Getting requirements to build wheel: started
20:37:38 Getting requirements to build wheel: finished with status 'done'
20:37:38 Installing backend dependencies: started
20:37:39 Installing backend dependencies: finished with status 'done'
20:37:39 Preparing metadata (pyproject.toml): started
20:37:39 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:39 Building wheels for collected packages: omero_marshal
20:37:39 Building wheel for omero_marshal (pyproject.toml): started
20:37:39 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
20:37:39 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=7d8f1dedf96a6495bc22314788361c14abfa2bdfc3da731178d0fe7c67d474bf
20:37:39 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
20:37:39 Successfully built omero_marshal
20:37:40 Installing collected packages: omero_marshal
20:37:40 Successfully installed omero_marshal-0.9.1.dev0
20:37:40 + for x in *.tar.gz
20:37:40 + pip install -U omero_py-5.19.3.dev0.tar.gz
20:37:40 Processing ./omero_py-5.19.3.dev0.tar.gz
20:37:41 Installing build dependencies: started
20:37:42 Installing build dependencies: finished with status 'done'
20:37:42 Getting requirements to build wheel: started
20:37:42 Getting requirements to build wheel: finished with status 'done'
20:37:42 Installing backend dependencies: started
20:37:43 Installing backend dependencies: finished with status 'done'
20:37:43 Preparing metadata (pyproject.toml): started
20:37:44 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18)
20:37:44 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4)
20:37:44 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0)
20:37:44 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4)
20:37:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0)
20:37:44 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1)
20:37:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5)
20:37:44 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.31.0)
20:37:44 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2)
20:37:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2)
20:37:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7)
20:37:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.2.2)
20:37:44 Building wheels for collected packages: omero-py
20:37:44 Building wheel for omero-py (pyproject.toml): started
20:37:45 Building wheel for omero-py (pyproject.toml): finished with status 'done'
20:37:45 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2783096 sha256=871d79257feba05b8223a9edc44157ebe3ebce0612b216a9ea665f4924fc6d2b
20:37:45 Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41
20:37:45 Successfully built omero-py
20:37:45 Installing collected packages: omero-py
20:37:45 Attempting uninstall: omero-py
20:37:45 Found existing installation: omero-py 5.19.2
20:37:45 Uninstalling omero-py-5.19.2:
20:37:45 Successfully uninstalled omero-py-5.19.2
20:37:47 Successfully installed omero-py-5.19.3.dev0
20:37:47 + for x in *.tar.gz
20:37:47 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
20:37:48 Processing ./omero_scripts-5.8.3.dev0.tar.gz
20:37:48 Installing build dependencies: started
20:37:49 Installing build dependencies: finished with status 'done'
20:37:49 Getting requirements to build wheel: started
20:37:50 Getting requirements to build wheel: finished with status 'done'
20:37:50 Installing backend dependencies: started
20:37:50 Installing backend dependencies: finished with status 'done'
20:37:50 Preparing metadata (pyproject.toml): started
20:37:51 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:51 Building wheels for collected packages: omero-scripts
20:37:51 Building wheel for omero-scripts (pyproject.toml): started
20:37:51 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
20:37:51 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=cddfa527912e5a685e44f793e743efd79baec0b7eaaa484f2c2fe9e7dff82c52
20:37:51 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
20:37:51 Successfully built omero-scripts
20:37:51 Installing collected packages: omero-scripts
20:37:51 Successfully installed omero-scripts-5.8.3.dev0
20:37:51 + for x in *.tar.gz
20:37:51 + pip install -U omero_web-5.25.1.dev0.tar.gz
20:37:52 Processing ./omero_web-5.25.1.dev0.tar.gz
20:37:52 Installing build dependencies: started
20:37:54 Installing build dependencies: finished with status 'done'
20:37:54 Getting requirements to build wheel: started
20:37:54 Getting requirements to build wheel: finished with status 'done'
20:37:54 Installing backend dependencies: started
20:37:55 Installing backend dependencies: finished with status 'done'
20:37:55 Preparing metadata (pyproject.toml): started
20:37:55 Preparing metadata (pyproject.toml): finished with status 'done'
20:37:55 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.3.dev0)
20:37:55 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
20:37:55 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
20:37:55 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
20:37:55 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
20:37:55 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
20:37:55 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
20:37:55 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
20:37:55 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
20:37:55 Collecting django-csp (from omero-web==5.25.1.dev0)
20:37:55 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
20:37:56 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
20:37:56 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
20:37:56 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
20:37:56 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
20:37:56 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
20:37:56 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
20:37:56 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
20:37:56 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
20:37:56 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
20:37:56 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:37:56 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
20:37:56 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:37:56 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
20:37:56 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
20:37:56 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
20:37:56 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
20:37:56 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
20:37:56 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
20:37:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
20:37:56 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
20:37:56 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:37:56 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
20:37:56 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
20:37:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
20:37:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
20:37:56 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
20:37:56 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
20:37:56 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
20:37:56 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
20:37:56 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
20:37:56 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
20:37:56 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
20:37:56 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
20:37:56 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
20:37:56 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
20:37:56 Building wheels for collected packages: omero-web
20:37:56 Building wheel for omero-web (pyproject.toml): started
20:37:57 Building wheel for omero-web (pyproject.toml): finished with status 'done'
20:37:57 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2768887 sha256=7f20c6d7846585d494b1df73374b5cf2b20de547ae64408c285855eaf2b9bb12
20:37:57 Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9
20:37:57 Successfully built omero-web
20:37:57 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
20:38:00 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
20:38:01 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:38:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:38:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:38:01 --2024-05-01 20:38:01-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:38:01 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
20:38:01 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
20:38:01 HTTP request sent, awaiting response... 200 OK
20:38:01 Length: 94763 (93K) [text/plain]
20:38:01 Saving to: ‘Figure_To_Pdf.py’
20:38:01
20:38:01 0K .......... .......... .......... .......... .......... 54% 3.83M 0s
20:38:01 50K .......... .......... .......... .......... .. 100% 18.2M=0.02s
20:38:01
20:38:01 2024-05-01 20:38:01 (6.01 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
20:38:01
20:38:01 + chmod 755 Figure_To_Pdf.py
20:38:01 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
20:38:01 + omero config set omero.db.name OMERO-server
20:38:02 + omero config set omero.db.host pg
20:38:03 + omero config set omero.db.user postgres
20:38:05 + omero config set omero.data.dir /home/omero/omero-server-data
20:38:06 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
20:38:07 + omero config set omero.db.poolsize 25
20:38:09 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
20:38:10 + omero config set omero.security.trustStorePassword changeit
20:38:11 + omero config set omero.mail.config true
20:38:12 + omero config set omero.mail.from qa@openmicroscopy.org.uk
20:38:14 + omero config set omero.mail.host smtp.dundee.ac.uk
20:38:15 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
20:38:16 + omero certificates
20:38:17 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
20:38:17 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
20:38:17 + '[' false = true ']'
20:38:17 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
20:38:17 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
20:38:17 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG dbcommand => upgrade
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG dbhost => localhost
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG dbname => OMERO-server
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG dbpass => omero
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG dbuser => omero
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG rootpass => omero
20:38:18 2024-05-01 20:38:18,165 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
20:38:18 2024-05-01 20:38:18,165 [omego.extern] INFO Executing : omero version
20:38:19 OMERO.py version:
20:38:19 OMERO.server version:
20:38:19 5.6.3-458-da8aba771d-ice36
20:38:19 5.19.3.dev0
20:38:19 2024-05-01 20:38:19,560 [omego.extern] INFO Completed [1.394 s]
20:38:19 2024-05-01 20:38:19,560 [omego.extern] DEBUG Using omero CLI from omero
20:38:19 2024-05-01 20:38:19,560 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
20:38:19 2024-05-01 20:38:19,560 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:38:19 2024-05-01 20:38:19,560 [omego.extern] INFO Executing : omero config get --show-password
20:38:20 2024-05-01 20:38:20,822 [omego.extern] INFO Completed [1.262 s]
20:38:20 2024-05-01 20:38:20,823 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:38:20 2024-05-01 20:38:20,823 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
20:38:20 2024-05-01 20:38:20,829 [omego.extern] INFO Completed [0.006 s]
20:38:20 2024-05-01 20:38:20,829 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
20:38:20 2024-05-01 20:38:20,829 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
20:38:20
20:38:20 2024-05-01 20:38:20,829 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:38:20 2024-05-01 20:38:20,829 [omego.extern] INFO Executing : omero config get --show-password
20:38:22 2024-05-01 20:38:22,086 [omego.extern] INFO Completed [1.257 s]
20:38:22 2024-05-01 20:38:22,087 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:38:22 2024-05-01 20:38:22,087 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
20:38:22 2024-05-01 20:38:22,096 [omego.extern] INFO Completed [0.009 s]
20:38:22 2024-05-01 20:38:22,096 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.6") at port "5432".\n'
20:38:22 2024-05-01 20:38:22,096 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:38:22 2024-05-01 20:38:22,096 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:38:22 2024-05-01 20:38:22,096 [omego.extern] INFO Executing : omero config get --show-password
20:38:23 2024-05-01 20:38:23,401 [omego.extern] INFO Completed [1.304 s]
20:38:23 2024-05-01 20:38:23,401 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:38:23 2024-05-01 20:38:23,401 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:38:23 2024-05-01 20:38:23,411 [omego.extern] INFO Completed [0.010 s]
20:38:23 2024-05-01 20:38:23,411 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
20:38:23 2024-05-01 20:38:23,411 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
20:38:23 2024-05-01 20:38:23,413 [ omego.db] INFO Database is already at OMERO5.4__0
20:38:23 + export LANG=en_US.UTF-8
20:38:23 + LANG=en_US.UTF-8
20:38:23 + export LANGUAGE=en_US:en
20:38:23 + LANGUAGE=en_US:en
20:38:23 + export LC_ALL=en_US.UTF-8
20:38:23 + LC_ALL=en_US.UTF-8
20:38:23 + BUILD_ID=DONT_KILL_ME
20:38:23 + omero admin start
20:38:31 No descriptor given. Using etc/grid/default.xml
20:38:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
20:38:38 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
20:38:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
20:38:38 Waiting on startup. Use CTRL-C to exit
20:38:38 + omero admin waitup
20:38:40 Waiting on startup. Use CTRL-C to exit
20:38:40 + omero admin diagnostics
20:38:41
20:38:41 ================================================================================
20:38:41 OMERO Diagnostics (admin)
20:38:41 ================================================================================
20:38:41
20:38:41 Commands: java -version 17.0.11 (/usr/bin/java)
20:38:41 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
20:38:41 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
20:38:41 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
20:38:41 Commands: psql --version 16.2 (/usr/bin/psql)
20:38:41 Commands: openssl version 3.0.71 (/usr/bin/openssl)
20:38:41
20:38:41 Component: OMERO.py 5.19.3.dev0
20:38:41 Component: OMERO.server 5.6.3-458-da8aba771d-ice36
20:38:41
20:38:41 Server: icegridnode running
20:38:41 Server: Blitz-0 active (pid = 21523, enabled)
20:38:41 Server: DropBox activating (enabled)
20:38:41 Server: FileServer active (pid = 21553, enabled)
20:38:41 Server: Indexer-0 activating (enabled)
20:38:41 Server: MonitorServer active (pid = 21561, enabled)
20:38:41 Server: OMERO.Glacier2 active (pid = 21562, enabled)
20:38:41 Server: OMERO.IceStorm active (pid = 21570, enabled)
20:38:41 Server: PixelData-0 activating (enabled)
20:38:41 Server: Processor-0 activating (enabled)
20:38:41 Server: Tables-0 activating (enabled)
20:38:41 Server: TestDropBox inactive (enabled)
20:38:41
20:38:41 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
20:38:41 Log files: Blitz-0.log 24.3 KB errors=0 warnings=1
20:38:41 Log files: DropBox.log 1.1 KB
20:38:41 Log files: FileServer.log 114 B
20:38:41 Log files: Indexer-0.log 114 B
20:38:41 Log files: MonitorServer.log 1.1 KB
20:38:41 Log files: PixelData-0.log 114 B
20:38:41 Log files: Processor-0.log 281 B
20:38:41 Log files: Tables-0.log 281 B
20:38:41 Log files: TestDropBox.log n/a
20:38:41 Log files: master.err empty
20:38:41 Log files: master.out 41.5 KB
20:38:41 Log files: Total size 0.07 MB
20:38:41
20:38:41
20:38:41 Environment:OMERO_HOME=(unset)
20:38:41 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:38:41 Environment:OMERO_NODE=(unset)
20:38:41 Environment:OMERO_MASTER=(unset)
20:38:41 Environment:OMERO_USERDIR=(unset)
20:38:41 Environment:OMERO_TMPDIR=(unset)
20:38:41 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:38:41 Environment:PYTHONPATH=(unset)
20:38:41 Environment:ICE_HOME=/opt/ice-3.6.5
20:38:41 Environment:LD_LIBRARY_PATH=(unset)
20:38:41 Environment:DYLD_LIBRARY_PATH=(unset)
20:38:41
20:38:41 OMERO SSL port:4064
20:38:41 OMERO TCP port:4063
20:38:41 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
20:38:41 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
20:38:41
20:38:41 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:38:41 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:38:41 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:38:41 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:38:41
20:38:41 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:38:41 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:38:41 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:38:41 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:41 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:41 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:41 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:41 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:41 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:38:42 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT
20:38:42 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT
20:38:42 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT
20:38:42 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT
20:38:42 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT
20:38:42 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT
20:38:42 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT
20:38:42 + deactivate
20:38:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:38:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:38:42 + export PATH
20:38:42 + unset _OLD_VIRTUAL_PATH
20:38:42 + '[' -n '' ']'
20:38:42 + '[' -n /bin/bash -o -n '' ']'
20:38:42 + hash -r
20:38:42 + '[' -n '' ']'
20:38:42 + unset VIRTUAL_ENV
20:38:42 + '[' '!' '' = nondestructive ']'
20:38:42 + unset -f deactivate
20:38:42 Finished: SUCCESS
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