00:51:49 Started by upstream project "Trigger" build number 66
00:51:49 originally caused by:
00:51:49 Started by timer
00:51:49 Running as SYSTEM
00:51:50 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:51:50 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9791215042042000475.sh
00:51:50 + source /home/settings.env
00:51:51 ++ OMERO_DB_HOST=pg
00:51:51 ++ OMERO_DB_USER=postgres
00:51:51 ++ OMERO_DB_PASS=
00:51:51 ++ OMERO_ROOT_PASS=omero
00:51:51 ++ OMERO_DATA_DIR=/OMERO
00:51:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:51:51 + OMERO_DB_NAME=OMERO-server
00:51:51 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:51:51 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:51:51 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:51:51 ++ deactivate nondestructive
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ hash -r
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ unset VIRTUAL_ENV
00:51:51 ++ unset VIRTUAL_ENV_PROMPT
00:51:51 ++ '[' '!' nondestructive = nondestructive ']'
00:51:51 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:51:51 ++ export VIRTUAL_ENV
00:51:51 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:51 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:51 ++ export PATH
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ '[' -z '' ']'
00:51:51 ++ _OLD_VIRTUAL_PS1=
00:51:51 ++ PS1='(.venv3) '
00:51:51 ++ export PS1
00:51:51 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:51:51 ++ export VIRTUAL_ENV_PROMPT
00:51:51 ++ hash -r
00:51:51 + omero admin stop
00:52:22 Server not running
00:52:22 + echo not running
00:52:22 not running
00:52:22 + sleep 5
00:52:27 + deactivate
00:52:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:52:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:27 + export PATH
00:52:27 + unset _OLD_VIRTUAL_PATH
00:52:27 + '[' -n '' ']'
00:52:27 + hash -r
00:52:27 + '[' -n '' ']'
00:52:27 + unset VIRTUAL_ENV
00:52:27 + unset VIRTUAL_ENV_PROMPT
00:52:27 + '[' '!' '' = nondestructive ']'
00:52:27 + unset -f deactivate
00:52:27 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:52:28 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:52:33 + '[' false = true ']'
00:52:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:52:33 Skipping PURGE_DATA:CleanDbAndRepo
00:52:33 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:52:35 Copied 1 artifact from "OMERO-build" build number 43
00:52:35 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 39
00:52:35 Copied 2 artifacts from "OMERO-build-build" build number 43
00:52:35 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 36
00:52:35 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12262931534677370280.sh
00:52:35 + source /home/settings.env
00:52:35 ++ OMERO_DB_HOST=pg
00:52:35 ++ OMERO_DB_USER=postgres
00:52:35 ++ OMERO_DB_PASS=
00:52:35 ++ OMERO_ROOT_PASS=omero
00:52:35 ++ OMERO_DATA_DIR=/OMERO
00:52:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:52:35 + OMERO_DB_NAME=OMERO-server
00:52:35 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:52:35 + mkdir -p /home/omero/omero-server-data
00:52:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:52:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:52:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:52:35 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:52:35 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:52:35 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:52:35 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:52:35 ++ ls OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
00:52:35 + ZIP=OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
00:52:35 + '[' '!' -z '' ']'
00:52:35 + DIST=OMERO.server-5.6.3-588-be163bcc16-ice36-b43
00:52:35 + unzip OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
00:52:36 Archive: OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/grid/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/profiles/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/error/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/janelia/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/matplotlib/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/ncsa_paledit/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/seaborn/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/wcif/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/analysis_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/annotation_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/export_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/figure_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/import_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/util_scripts/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/server/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/share/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/share/licenses/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/misc/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__1/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__10/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__11/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__2/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__3/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__4/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__5/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__6/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__7/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__8/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__9/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__4/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__5/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__6/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__7/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.1__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.2__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.2__0/t/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.3__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.4__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.0__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.1__1/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.2__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.3__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__1/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__2/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__3/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/var/
00:52:36 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/var/tmp/
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/LICENSE.txt
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/backup.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/mail-senders.example
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/mail-server.example
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/build.properties
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/env.bat
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/env.sh
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/hibernate.properties
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/ice.config
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-cli.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-indexing-cli.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-indexing.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/mime.types
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/node1.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/node2.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/omero.properties
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/profiles/psql
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/rollover.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/Windows.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/error/maintainance.html
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/README
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/default.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/templates.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/windefault.xml
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/ice.config
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/internal.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/master.cfg
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/robot.template
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/testdropbox.config
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/history.rst
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/OMEZarrReader.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/accessors-smart.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/activation.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aggdesigner-algorithm.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aircompressor.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/antlr.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aopalliance.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/apiguardian-api.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/asm.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/avatica-core.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/avatica-metrics.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-core.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-kms.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-s3.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/base.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-anim.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-awt-util.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-bridge.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-codec.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-constants.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-css.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-dom.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-ext.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-gvt.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-i18n.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-parser.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-script.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-shared-resources.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-svg-dom.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-svggen.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-transcoder.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-util.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-xml.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/btm.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/calcite-core.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/calcite-linq4j.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/cdm-core.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/checker-qual.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/commons-beanutils.jar
00:52:36 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/commons-codec.jar
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00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/psql-footer.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/psql-header.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/schema.sql
00:52:38 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/views.sql
00:52:38 + rm -f OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
00:52:38 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-588-be163bcc16-ice36-b43 /home/omero/workspace/OMERO-server/OMERO.server
00:52:38 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:52:38 + awsSdkVersion=2.34.6
00:52:38 + jacksonVersion=2.20.0
00:52:38 + logbackVersion=1.3.14
00:52:38 + zarrJavaVersion=0.0.10
00:52:38 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:39 --2026-02-04 00:52:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:39 HTTP request sent, awaiting response... 200 OK
00:52:39 Length: 4083366 (3.9M) [application/java-archive]
00:52:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:52:39
00:52:39 0K .......... .......... .......... .......... .......... 1% 2.92M 1s
00:52:39 50K .......... .......... .......... .......... .......... 2% 6.38M 1s
00:52:39 100K .......... .......... .......... .......... .......... 3% 4.29M 1s
00:52:39 150K .......... .......... .......... .......... .......... 5% 8.66M 1s
00:52:39 200K .......... .......... .......... .......... .......... 6% 7.59M 1s
00:52:39 250K .......... .......... .......... .......... .......... 7% 10.6M 1s
00:52:39 300K .......... .......... .......... .......... .......... 8% 17.7M 1s
00:52:39 350K .......... .......... .......... .......... .......... 10% 13.2M 1s
00:52:39 400K .......... .......... .......... .......... .......... 11% 19.4M 0s
00:52:39 450K .......... .......... .......... .......... .......... 12% 13.5M 0s
00:52:39 500K .......... .......... .......... .......... .......... 13% 9.69M 0s
00:52:39 550K .......... .......... .......... .......... .......... 15% 12.6M 0s
00:52:39 600K .......... .......... .......... .......... .......... 16% 15.8M 0s
00:52:39 650K .......... .......... .......... .......... .......... 17% 20.2M 0s
00:52:39 700K .......... .......... .......... .......... .......... 18% 26.3M 0s
00:52:39 750K .......... .......... .......... .......... .......... 20% 9.74M 0s
00:52:39 800K .......... .......... .......... .......... .......... 21% 9.83M 0s
00:52:39 850K .......... .......... .......... .......... .......... 22% 24.1M 0s
00:52:39 900K .......... .......... .......... .......... .......... 23% 12.4M 0s
00:52:39 950K .......... .......... .......... .......... .......... 25% 106M 0s
00:52:39 1000K .......... .......... .......... .......... .......... 26% 15.4M 0s
00:52:39 1050K .......... .......... .......... .......... .......... 27% 7.16M 0s
00:52:39 1100K .......... .......... .......... .......... .......... 28% 22.8M 0s
00:52:39 1150K .......... .......... .......... .......... .......... 30% 12.4M 0s
00:52:39 1200K .......... .......... .......... .......... .......... 31% 96.8M 0s
00:52:39 1250K .......... .......... .......... .......... .......... 32% 16.4M 0s
00:52:39 1300K .......... .......... .......... .......... .......... 33% 12.5M 0s
00:52:39 1350K .......... .......... .......... .......... .......... 35% 14.9M 0s
00:52:39 1400K .......... .......... .......... .......... .......... 36% 8.77M 0s
00:52:39 1450K .......... .......... .......... .......... .......... 37% 45.1M 0s
00:52:39 1500K .......... .......... .......... .......... .......... 38% 11.3M 0s
00:52:39 1550K .......... .......... .......... .......... .......... 40% 16.7M 0s
00:52:39 1600K .......... .......... .......... .......... .......... 41% 12.9M 0s
00:52:39 1650K .......... .......... .......... .......... .......... 42% 11.5M 0s
00:52:40 1700K .......... .......... .......... .......... .......... 43% 15.4M 0s
00:52:40 1750K .......... .......... .......... .......... .......... 45% 16.7M 0s
00:52:40 1800K .......... .......... .......... .......... .......... 46% 22.0M 0s
00:52:40 1850K .......... .......... .......... .......... .......... 47% 10.7M 0s
00:52:40 1900K .......... .......... .......... .......... .......... 48% 11.4M 0s
00:52:40 1950K .......... .......... .......... .......... .......... 50% 20.1M 0s
00:52:40 2000K .......... .......... .......... .......... .......... 51% 15.2M 0s
00:52:40 2050K .......... .......... .......... .......... .......... 52% 17.4M 0s
00:52:40 2100K .......... .......... .......... .......... .......... 53% 14.1M 0s
00:52:40 2150K .......... .......... .......... .......... .......... 55% 15.9M 0s
00:52:40 2200K .......... .......... .......... .......... .......... 56% 13.6M 0s
00:52:40 2250K .......... .......... .......... .......... .......... 57% 13.0M 0s
00:52:40 2300K .......... .......... .......... .......... .......... 58% 13.2M 0s
00:52:40 2350K .......... .......... .......... .......... .......... 60% 14.1M 0s
00:52:40 2400K .......... .......... .......... .......... .......... 61% 11.7M 0s
00:52:40 2450K .......... .......... .......... .......... .......... 62% 25.0M 0s
00:52:40 2500K .......... .......... .......... .......... .......... 63% 16.1M 0s
00:52:40 2550K .......... .......... .......... .......... .......... 65% 14.5M 0s
00:52:40 2600K .......... .......... .......... .......... .......... 66% 16.5M 0s
00:52:40 2650K .......... .......... .......... .......... .......... 67% 9.01M 0s
00:52:40 2700K .......... .......... .......... .......... .......... 68% 20.3M 0s
00:52:40 2750K .......... .......... .......... .......... .......... 70% 19.6M 0s
00:52:40 2800K .......... .......... .......... .......... .......... 71% 13.5M 0s
00:52:40 2850K .......... .......... .......... .......... .......... 72% 20.9M 0s
00:52:40 2900K .......... .......... .......... .......... .......... 73% 9.80M 0s
00:52:40 2950K .......... .......... .......... .......... .......... 75% 17.2M 0s
00:52:40 3000K .......... .......... .......... .......... .......... 76% 18.1M 0s
00:52:40 3050K .......... .......... .......... .......... .......... 77% 14.1M 0s
00:52:40 3100K .......... .......... .......... .......... .......... 78% 20.8M 0s
00:52:40 3150K .......... .......... .......... .......... .......... 80% 20.2M 0s
00:52:40 3200K .......... .......... .......... .......... .......... 81% 9.03M 0s
00:52:40 3250K .......... .......... .......... .......... .......... 82% 27.3M 0s
00:52:40 3300K .......... .......... .......... .......... .......... 84% 9.72M 0s
00:52:40 3350K .......... .......... .......... .......... .......... 85% 25.9M 0s
00:52:40 3400K .......... .......... .......... .......... .......... 86% 20.9M 0s
00:52:40 3450K .......... .......... .......... .......... .......... 87% 9.06M 0s
00:52:40 3500K .......... .......... .......... .......... .......... 89% 29.1M 0s
00:52:40 3550K .......... .......... .......... .......... .......... 90% 11.3M 0s
00:52:40 3600K .......... .......... .......... .......... .......... 91% 17.9M 0s
00:52:40 3650K .......... .......... .......... .......... .......... 92% 22.0M 0s
00:52:40 3700K .......... .......... .......... .......... .......... 94% 8.92M 0s
00:52:40 3750K .......... .......... .......... .......... .......... 95% 19.1M 0s
00:52:40 3800K .......... .......... .......... .......... .......... 96% 11.9M 0s
00:52:40 3850K .......... .......... .......... .......... .......... 97% 26.1M 0s
00:52:40 3900K .......... .......... .......... .......... .......... 99% 21.3M 0s
00:52:40 3950K .......... .......... .......... ....... 100% 10.2M=0.3s
00:52:40
00:52:40 2026-02-04 00:52:40 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:52:40
00:52:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:40 --2026-02-04 00:52:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:40 HTTP request sent, awaiting response... 200 OK
00:52:40 Length: 234962 (229K) [application/java-archive]
00:52:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:52:40
00:52:40 0K .......... .......... .......... .......... .......... 21% 16.8M 0s
00:52:40 50K .......... .......... .......... .......... .......... 43% 3.13M 0s
00:52:40 100K .......... .......... .......... .......... .......... 65% 14.9M 0s
00:52:40 150K .......... .......... .......... .......... .......... 87% 3.74M 0s
00:52:40 200K .......... .......... ......... 100% 15.6M=0.04s
00:52:40
00:52:40 2026-02-04 00:52:40 (6.11 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:52:40
00:52:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:40 --2026-02-04 00:52:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:40 HTTP request sent, awaiting response... 200 OK
00:52:40 Length: 192161 (188K) [application/java-archive]
00:52:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:52:40
00:52:40 0K .......... .......... .......... .......... .......... 26% 34.5M 0s
00:52:40 50K .......... .......... .......... .......... .......... 53% 3.02M 0s
00:52:40 100K .......... .......... .......... .......... .......... 79% 93.6M 0s
00:52:40 150K .......... .......... .......... ....... 100% 2.38M=0.03s
00:52:40
00:52:40 2026-02-04 00:52:40 (5.46 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:52:40
00:52:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
00:52:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:40 --2026-02-04 00:52:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
00:52:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:40 HTTP request sent, awaiting response... 200 OK
00:52:41 Length: 10263 (10K) [application/java-archive]
00:52:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’
00:52:41
00:52:41 0K .......... 100% 27.8M=0s
00:52:41
00:52:41 2026-02-04 00:52:41 (27.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’ saved [10263/10263]
00:52:41
00:52:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:41 --2026-02-04 00:52:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:41 HTTP request sent, awaiting response... 200 OK
00:52:41 Length: 1037104 (1013K) [application/java-archive]
00:52:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:52:41
00:52:41 0K .......... .......... .......... .......... .......... 4% 32.0M 0s
00:52:41 50K .......... .......... .......... .......... .......... 9% 3.01M 0s
00:52:41 100K .......... .......... .......... .......... .......... 14% 3.28M 0s
00:52:41 150K .......... .......... .......... .......... .......... 19% 32.5M 0s
00:52:41 200K .......... .......... .......... .......... .......... 24% 61.8M 0s
00:52:41 250K .......... .......... .......... .......... .......... 29% 48.6M 0s
00:52:41 300K .......... .......... .......... .......... .......... 34% 58.2M 0s
00:52:41 350K .......... .......... .......... .......... .......... 39% 4.03M 0s
00:52:41 400K .......... .......... .......... .......... .......... 44% 22.2M 0s
00:52:41 450K .......... .......... .......... .......... .......... 49% 57.5M 0s
00:52:41 500K .......... .......... .......... .......... .......... 54% 48.4M 0s
00:52:41 550K .......... .......... .......... .......... .......... 59% 335M 0s
00:52:41 600K .......... .......... .......... .......... .......... 64% 108M 0s
00:52:41 650K .......... .......... .......... .......... .......... 69% 3.53M 0s
00:52:41 700K .......... .......... .......... .......... .......... 74% 44.3M 0s
00:52:41 750K .......... .......... .......... .......... .......... 78% 59.0M 0s
00:52:41 800K .......... .......... .......... .......... .......... 83% 66.0M 0s
00:52:41 850K .......... .......... .......... .......... .......... 88% 129M 0s
00:52:41 900K .......... .......... .......... .......... .......... 93% 3.70M 0s
00:52:41 950K .......... .......... .......... .......... .......... 98% 43.0M 0s
00:52:41 1000K .......... .. 100% 269M=0.08s
00:52:41
00:52:41 2026-02-04 00:52:41 (11.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:52:41
00:52:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:41 --2026-02-04 00:52:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:41 HTTP request sent, awaiting response... 200 OK
00:52:41 Length: 13758 (13K) [application/java-archive]
00:52:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:52:41
00:52:41 0K .......... ... 100% 48.6M=0s
00:52:41
00:52:41 2026-02-04 00:52:41 (48.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:52:41
00:52:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:41 --2026-02-04 00:52:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:41 HTTP request sent, awaiting response... 200 OK
00:52:41 Length: 962220 (940K) [application/java-archive]
00:52:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:52:41
00:52:41 0K .......... .......... .......... .......... .......... 5% 2.97M 0s
00:52:41 50K .......... .......... .......... .......... .......... 10% 6.51M 0s
00:52:41 100K .......... .......... .......... .......... .......... 15% 4.08M 0s
00:52:41 150K .......... .......... .......... .......... .......... 21% 9.05M 0s
00:52:41 200K .......... .......... .......... .......... .......... 26% 10.7M 0s
00:52:41 250K .......... .......... .......... .......... .......... 31% 8.66M 0s
00:52:41 300K .......... .......... .......... .......... .......... 37% 16.4M 0s
00:52:41 350K .......... .......... .......... .......... .......... 42% 14.5M 0s
00:52:42 400K .......... .......... .......... .......... .......... 47% 17.3M 0s
00:52:42 450K .......... .......... .......... .......... .......... 53% 17.5M 0s
00:52:42 500K .......... .......... .......... .......... .......... 58% 13.4M 0s
00:52:42 550K .......... .......... .......... .......... .......... 63% 14.1M 0s
00:52:42 600K .......... .......... .......... .......... .......... 69% 19.7M 0s
00:52:42 650K .......... .......... .......... .......... .......... 74% 8.97M 0s
00:52:42 700K .......... .......... .......... .......... .......... 79% 24.9M 0s
00:52:42 750K .......... .......... .......... .......... .......... 85% 16.2M 0s
00:52:42 800K .......... .......... .......... .......... .......... 90% 13.2M 0s
00:52:42 850K .......... .......... .......... .......... .......... 95% 12.4M 0s
00:52:42 900K .......... .......... .......... ......... 100% 20.8M=0.09s
00:52:42
00:52:42 2026-02-04 00:52:42 (9.87 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:52:42
00:52:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:42 --2026-02-04 00:52:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:42 HTTP request sent, awaiting response... 200 OK
00:52:42 Length: 30963 (30K) [application/java-archive]
00:52:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:52:42
00:52:42 0K .......... .......... .......... 100% 36.4M=0.001s
00:52:42
00:52:42 2026-02-04 00:52:42 (36.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:52:42
00:52:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:42 --2026-02-04 00:52:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:42 HTTP request sent, awaiting response... 200 OK
00:52:42 Length: 241618 (236K) [application/java-archive]
00:52:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:52:42
00:52:42 0K .......... .......... .......... .......... .......... 21% 33.9M 0s
00:52:42 50K .......... .......... .......... .......... .......... 42% 2.98M 0s
00:52:42 100K .......... .......... .......... .......... .......... 63% 3.33M 0s
00:52:42 150K .......... .......... .......... .......... .......... 84% 31.4M 0s
00:52:42 200K .......... .......... .......... ..... 100% 234M=0.03s
00:52:42
00:52:42 2026-02-04 00:52:42 (6.73 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:52:42
00:52:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:52:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:42 --2026-02-04 00:52:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:52:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:42 HTTP request sent, awaiting response... 200 OK
00:52:42 Length: 77013 (75K) [application/java-archive]
00:52:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’
00:52:42
00:52:42 0K .......... .......... .......... .......... .......... 66% 2.90M 0s
00:52:42 50K .......... .......... ..... 100% 6.27M=0.02s
00:52:42
00:52:42 2026-02-04 00:52:42 (3.54 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’ saved [77013/77013]
00:52:42
00:52:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:52:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:42 --2026-02-04 00:52:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:52:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:43 HTTP request sent, awaiting response... 200 OK
00:52:43 Length: 292688 (286K) [application/java-archive]
00:52:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’
00:52:43
00:52:43 0K .......... .......... .......... .......... .......... 17% 35.0M 0s
00:52:43 50K .......... .......... .......... .......... .......... 34% 2.98M 0s
00:52:43 100K .......... .......... .......... .......... .......... 52% 67.9M 0s
00:52:43 150K .......... .......... .......... .......... .......... 69% 3.06M 0s
00:52:43 200K .......... .......... .......... .......... .......... 87% 182M 0s
00:52:43 250K .......... .......... .......... ..... 100% 38.9M=0.04s
00:52:43
00:52:43 2026-02-04 00:52:43 (7.84 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’ saved [292688/292688]
00:52:43
00:52:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:43 --2026-02-04 00:52:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:43 HTTP request sent, awaiting response... 200 OK
00:52:43 Length: 91685 (90K) [application/java-archive]
00:52:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:52:43
00:52:43 0K .......... .......... .......... .......... .......... 55% 33.4M 0s
00:52:43 50K .......... .......... .......... ......... 100% 2.39M=0.02s
00:52:43
00:52:43 2026-02-04 00:52:43 (4.96 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:52:43
00:52:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:43 --2026-02-04 00:52:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:43 HTTP request sent, awaiting response... 200 OK
00:52:43 Length: 66309 (65K) [application/java-archive]
00:52:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:52:43
00:52:43 0K .......... .......... .......... .......... .......... 77% 2.77M 0s
00:52:43 50K .......... .... 100% 5.60M=0.02s
00:52:43
00:52:43 2026-02-04 00:52:43 (3.13 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:52:43
00:52:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:52:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:43 --2026-02-04 00:52:43-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:52:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:44 HTTP request sent, awaiting response... 200 OK
00:52:44 Length: 593063 (579K) [application/java-archive]
00:52:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:52:44
00:52:44 0K .......... .......... .......... .......... .......... 8% 2.60M 0s
00:52:44 50K .......... .......... .......... .......... .......... 17% 6.28M 0s
00:52:44 100K .......... .......... .......... .......... .......... 25% 3.34M 0s
00:52:44 150K .......... .......... .......... .......... .......... 34% 9.08M 0s
00:52:44 200K .......... .......... .......... .......... .......... 43% 6.78M 0s
00:52:44 250K .......... .......... .......... .......... .......... 51% 13.5M 0s
00:52:44 300K .......... .......... .......... .......... .......... 60% 11.1M 0s
00:52:44 350K .......... .......... .......... .......... .......... 69% 13.5M 0s
00:52:44 400K .......... .......... .......... .......... .......... 77% 17.2M 0s
00:52:44 450K .......... .......... .......... .......... .......... 86% 16.8M 0s
00:52:44 500K .......... .......... .......... .......... .......... 94% 14.4M 0s
00:52:44 550K .......... .......... ......... 100% 15.1M=0.08s
00:52:44
00:52:44 2026-02-04 00:52:44 (7.41 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:52:44
00:52:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:52:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:44 --2026-02-04 00:52:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:52:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:44 HTTP request sent, awaiting response... 200 OK
00:52:44 Length: 1688471 (1.6M) [application/java-archive]
00:52:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:52:44
00:52:44 0K .......... .......... .......... .......... .......... 3% 2.17M 1s
00:52:44 50K .......... .......... .......... .......... .......... 6% 5.58M 0s
00:52:44 100K .......... .......... .......... .......... .......... 9% 2.62M 0s
00:52:44 150K .......... .......... .......... .......... .......... 12% 6.27M 0s
00:52:44 200K .......... .......... .......... .......... .......... 15% 7.60M 0s
00:52:44 250K .......... .......... .......... .......... .......... 18% 6.32M 0s
00:52:44 300K .......... .......... .......... .......... .......... 21% 10.8M 0s
00:52:44 350K .......... .......... .......... .......... .......... 24% 7.62M 0s
00:52:44 400K .......... .......... .......... .......... .......... 27% 10.6M 0s
00:52:44 450K .......... .......... .......... .......... .......... 30% 11.8M 0s
00:52:44 500K .......... .......... .......... .......... .......... 33% 6.48M 0s
00:52:44 550K .......... .......... .......... .......... .......... 36% 8.69M 0s
00:52:44 600K .......... .......... .......... .......... .......... 39% 12.2M 0s
00:52:44 650K .......... .......... .......... .......... .......... 42% 9.57M 0s
00:52:44 700K .......... .......... .......... .......... .......... 45% 9.77M 0s
00:52:44 750K .......... .......... .......... .......... .......... 48% 9.13M 0s
00:52:44 800K .......... .......... .......... .......... .......... 51% 8.22M 0s
00:52:44 850K .......... .......... .......... .......... .......... 54% 10.7M 0s
00:52:44 900K .......... .......... .......... .......... .......... 57% 10.3M 0s
00:52:44 950K .......... .......... .......... .......... .......... 60% 6.51M 0s
00:52:44 1000K .......... .......... .......... .......... .......... 63% 8.93M 0s
00:52:44 1050K .......... .......... .......... .......... .......... 66% 7.55M 0s
00:52:44 1100K .......... .......... .......... .......... .......... 69% 10.7M 0s
00:52:44 1150K .......... .......... .......... .......... .......... 72% 9.28M 0s
00:52:44 1200K .......... .......... .......... .......... .......... 75% 8.34M 0s
00:52:44 1250K .......... .......... .......... .......... .......... 78% 12.8M 0s
00:52:44 1300K .......... .......... .......... .......... .......... 81% 5.77M 0s
00:52:44 1350K .......... .......... .......... .......... .......... 84% 12.7M 0s
00:52:44 1400K .......... .......... .......... .......... .......... 87% 14.0M 0s
00:52:44 1450K .......... .......... .......... .......... .......... 90% 9.52M 0s
00:52:44 1500K .......... .......... .......... .......... .......... 94% 17.8M 0s
00:52:44 1550K .......... .......... .......... .......... .......... 97% 3.78M 0s
00:52:44 1600K .......... .......... .......... .......... ........ 100% 10.9M=0.2s
00:52:44
00:52:44 2026-02-04 00:52:44 (7.35 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:52:44
00:52:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:44 --2026-02-04 00:52:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:44 HTTP request sent, awaiting response... 200 OK
00:52:44 Length: 36400 (36K) [application/java-archive]
00:52:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:52:44
00:52:44 0K .......... .......... .......... ..... 100% 30.1M=0.001s
00:52:44
00:52:44 2026-02-04 00:52:44 (30.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:52:44
00:52:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:52:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:44 --2026-02-04 00:52:44-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:52:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:45 HTTP request sent, awaiting response... 200 OK
00:52:45 Length: 79195 (77K) [application/java-archive]
00:52:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:52:45
00:52:45 0K .......... .......... .......... .......... .......... 64% 32.5M 0s
00:52:45 50K .......... .......... ....... 100% 1.77M=0.02s
00:52:45
00:52:45 2026-02-04 00:52:45 (4.55 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:52:45
00:52:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:52:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:45 --2026-02-04 00:52:45-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:52:45 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:45 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:52:45 HTTP request sent, awaiting response... 200 OK
00:52:45 Length: 277829 (271K) [application/java-archive]
00:52:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:52:45
00:52:45 0K .......... .......... .......... .......... .......... 18% 32.0M 0s
00:52:45 50K .......... .......... .......... .......... .......... 36% 3.00M 0s
00:52:45 100K .......... .......... .......... .......... .......... 55% 3.33M 0s
00:52:45 150K .......... .......... .......... .......... .......... 73% 34.3M 0s
00:52:45 200K .......... .......... .......... .......... .......... 92% 50.4M 0s
00:52:45 250K .......... .......... . 100% 24.1M=0.04s
00:52:45
00:52:45 2026-02-04 00:52:45 (7.41 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:52:45
00:52:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:52:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:45 --2026-02-04 00:52:45-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:52:45 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:45 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:45 HTTP request sent, awaiting response... 200 OK
00:52:45 Length: 579673 (566K) [application/java-archive]
00:52:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:52:45
00:52:45 0K .......... .......... .......... .......... .......... 8% 31.4M 0s
00:52:45 50K .......... .......... .......... .......... .......... 17% 3.00M 0s
00:52:45 100K .......... .......... .......... .......... .......... 26% 3.17M 0s
00:52:45 150K .......... .......... .......... .......... .......... 35% 48.2M 0s
00:52:45 200K .......... .......... .......... .......... .......... 44% 166M 0s
00:52:45 250K .......... .......... .......... .......... .......... 52% 49.8M 0s
00:52:45 300K .......... .......... .......... .......... .......... 61% 48.0M 0s
00:52:45 350K .......... .......... .......... .......... .......... 70% 3.55M 0s
00:52:45 400K .......... .......... .......... .......... .......... 79% 92.7M 0s
00:52:45 450K .......... .......... .......... .......... .......... 88% 54.7M 0s
00:52:45 500K .......... .......... .......... .......... .......... 97% 289M 0s
00:52:45 550K .......... ...... 100% 17.8M=0.05s
00:52:45
00:52:45 2026-02-04 00:52:45 (10.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:52:45
00:52:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:52:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:45 --2026-02-04 00:52:45-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:52:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:46 HTTP request sent, awaiting response... 200 OK
00:52:46 Length: 175836 (172K) [application/java-archive]
00:52:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:52:46
00:52:46 0K .......... .......... .......... .......... .......... 29% 2.95M 0s
00:52:46 50K .......... .......... .......... .......... .......... 58% 6.42M 0s
00:52:46 100K .......... .......... .......... .......... .......... 87% 4.02M 0s
00:52:46 150K .......... .......... . 100% 11.0M=0.04s
00:52:46
00:52:46 2026-02-04 00:52:46 (4.38 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:52:46
00:52:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:46 --2026-02-04 00:52:46-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:46 HTTP request sent, awaiting response... 200 OK
00:52:46 Length: 889211 (868K) [application/java-archive]
00:52:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:52:46
00:52:46 0K .......... .......... .......... .......... .......... 5% 32.5M 0s
00:52:46 50K .......... .......... .......... .......... .......... 11% 1.76M 0s
00:52:46 100K .......... .......... .......... .......... .......... 17% 1.76M 0s
00:52:46 150K .......... .......... .......... .......... .......... 23% 35.9M 0s
00:52:46 200K .......... .......... .......... .......... .......... 28% 65.1M 0s
00:52:46 250K .......... .......... .......... .......... .......... 34% 26.3M 0s
00:52:46 300K .......... .......... .......... .......... .......... 40% 2.26M 0s
00:52:46 350K .......... .......... .......... .......... .......... 46% 41.5M 0s
00:52:46 400K .......... .......... .......... .......... .......... 51% 60.4M 0s
00:52:46 450K .......... .......... .......... .......... .......... 57% 45.2M 0s
00:52:46 500K .......... .......... .......... .......... .......... 63% 26.1M 0s
00:52:46 550K .......... .......... .......... .......... .......... 69% 2.46M 0s
00:52:46 600K .......... .......... .......... .......... .......... 74% 35.9M 0s
00:52:46 650K .......... .......... .......... .......... .......... 80% 62.5M 0s
00:52:46 700K .......... .......... .......... .......... .......... 86% 35.9M 0s
00:52:46 750K .......... .......... .......... .......... .......... 92% 21.6M 0s
00:52:46 800K .......... .......... .......... .......... .......... 97% 2.39M 0s
00:52:46 850K .......... ........ 100% 182M=0.1s
00:52:46
00:52:46 2026-02-04 00:52:46 (6.35 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:52:46
00:52:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:52:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:46 --2026-02-04 00:52:46-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:52:46 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:46 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:52:47 HTTP request sent, awaiting response... 200 OK
00:52:47 Length: 736051 (719K) [application/java-archive]
00:52:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:52:47
00:52:47 0K .......... .......... .......... .......... .......... 6% 33.9M 0s
00:52:47 50K .......... .......... .......... .......... .......... 13% 3.00M 0s
00:52:47 100K .......... .......... .......... .......... .......... 20% 3.21M 0s
00:52:47 150K .......... .......... .......... .......... .......... 27% 46.8M 0s
00:52:47 200K .......... .......... .......... .......... .......... 34% 155M 0s
00:52:47 250K .......... .......... .......... .......... .......... 41% 49.5M 0s
00:52:47 300K .......... .......... .......... .......... .......... 48% 48.7M 0s
00:52:47 350K .......... .......... .......... .......... .......... 55% 3.70M 0s
00:52:47 400K .......... .......... .......... .......... .......... 62% 43.4M 0s
00:52:47 450K .......... .......... .......... .......... .......... 69% 98.8M 0s
00:52:47 500K .......... .......... .......... .......... .......... 76% 42.2M 0s
00:52:47 550K .......... .......... .......... .......... .......... 83% 47.7M 0s
00:52:47 600K .......... .......... .......... .......... .......... 90% 61.3M 0s
00:52:47 650K .......... .......... .......... .......... .......... 97% 3.56M 0s
00:52:47 700K .......... ........ 100% 75.5M=0.07s
00:52:47
00:52:47 2026-02-04 00:52:47 (10.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:52:47
00:52:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:47 --2026-02-04 00:52:47-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:47 HTTP request sent, awaiting response... 200 OK
00:52:47 Length: 331034 (323K) [application/java-archive]
00:52:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:52:47
00:52:47 0K .......... .......... .......... .......... .......... 15% 31.1M 0s
00:52:47 50K .......... .......... .......... .......... .......... 30% 3.07M 0s
00:52:47 100K .......... .......... .......... .......... .......... 46% 37.0M 0s
00:52:47 150K .......... .......... .......... .......... .......... 61% 3.01M 0s
00:52:47 200K .......... .......... .......... .......... .......... 77% 39.7M 0s
00:52:47 250K .......... .......... .......... .......... .......... 92% 44.7M 0s
00:52:47 300K .......... .......... ... 100% 24.5M=0.04s
00:52:47
00:52:47 2026-02-04 00:52:47 (8.25 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:52:47
00:52:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:52:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:47 --2026-02-04 00:52:47-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:52:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:47 HTTP request sent, awaiting response... 200 OK
00:52:47 Length: 6749842 (6.4M) [application/java-archive]
00:52:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:52:47
00:52:47 0K .......... .......... .......... .......... .......... 0% 34.4M 0s
00:52:47 50K .......... .......... .......... .......... .......... 1% 1.97M 2s
00:52:47 100K .......... .......... .......... .......... .......... 2% 93.2M 1s
00:52:47 150K .......... .......... .......... .......... .......... 3% 2.27M 2s
00:52:47 200K .......... .......... .......... .......... .......... 3% 47.4M 1s
00:52:47 250K .......... .......... .......... .......... .......... 4% 139M 1s
00:52:47 300K .......... .......... .......... .......... .......... 5% 61.6M 1s
00:52:47 350K .......... .......... .......... .......... .......... 6% 47.6M 1s
00:52:47 400K .......... .......... .......... .......... .......... 6% 2.82M 1s
00:52:47 450K .......... .......... .......... .......... .......... 7% 109M 1s
00:52:47 500K .......... .......... .......... .......... .......... 8% 200M 1s
00:52:47 550K .......... .......... .......... .......... .......... 9% 51.3M 1s
00:52:47 600K .......... .......... .......... .......... .......... 9% 50.1M 1s
00:52:47 650K .......... .......... .......... .......... .......... 10% 3.63M 1s
00:52:47 700K .......... .......... .......... .......... .......... 11% 67.2M 1s
00:52:47 750K .......... .......... .......... .......... .......... 12% 41.1M 1s
00:52:47 800K .......... .......... .......... .......... .......... 12% 60.4M 1s
00:52:47 850K .......... .......... .......... .......... .......... 13% 59.2M 1s
00:52:47 900K .......... .......... .......... .......... .......... 14% 3.63M 1s
00:52:47 950K .......... .......... .......... .......... .......... 15% 144M 1s
00:52:47 1000K .......... .......... .......... .......... .......... 15% 44.8M 1s
00:52:47 1050K .......... .......... .......... .......... .......... 16% 69.9M 1s
00:52:47 1100K .......... .......... .......... .......... .......... 17% 51.4M 0s
00:52:47 1150K .......... .......... .......... .......... .......... 18% 3.44M 1s
00:52:47 1200K .......... .......... .......... .......... .......... 18% 63.7M 1s
00:52:47 1250K .......... .......... .......... .......... .......... 19% 94.5M 0s
00:52:47 1300K .......... .......... .......... .......... .......... 20% 49.6M 0s
00:52:47 1350K .......... .......... .......... .......... .......... 21% 65.8M 0s
00:52:47 1400K .......... .......... .......... .......... .......... 21% 3.62M 0s
00:52:47 1450K .......... .......... .......... .......... .......... 22% 17.2M 0s
00:52:47 1500K .......... .......... .......... .......... .......... 23% 12.9M 0s
00:52:47 1550K .......... .......... .......... .......... .......... 24% 16.9M 0s
00:52:47 1600K .......... .......... .......... .......... .......... 25% 16.4M 0s
00:52:47 1650K .......... .......... .......... .......... .......... 25% 9.69M 0s
00:52:47 1700K .......... .......... .......... .......... .......... 26% 28.5M 0s
00:52:47 1750K .......... .......... .......... .......... .......... 27% 12.9M 0s
00:52:47 1800K .......... .......... .......... .......... .......... 28% 16.4M 0s
00:52:47 1850K .......... .......... .......... .......... .......... 28% 14.2M 0s
00:52:47 1900K .......... .......... .......... .......... .......... 29% 14.2M 0s
00:52:47 1950K .......... .......... .......... .......... .......... 30% 19.6M 0s
00:52:47 2000K .......... .......... .......... .......... .......... 31% 17.1M 0s
00:52:47 2050K .......... .......... .......... .......... .......... 31% 11.8M 0s
00:52:47 2100K .......... .......... .......... .......... .......... 32% 13.6M 0s
00:52:47 2150K .......... .......... .......... .......... .......... 33% 15.5M 0s
00:52:47 2200K .......... .......... .......... .......... .......... 34% 13.2M 0s
00:52:47 2250K .......... .......... .......... .......... .......... 34% 19.1M 0s
00:52:47 2300K .......... .......... .......... .......... .......... 35% 20.0M 0s
00:52:47 2350K .......... .......... .......... .......... .......... 36% 11.3M 0s
00:52:47 2400K .......... .......... .......... .......... .......... 37% 15.0M 0s
00:52:47 2450K .......... .......... .......... .......... .......... 37% 15.0M 0s
00:52:47 2500K .......... .......... .......... .......... .......... 38% 9.28M 0s
00:52:47 2550K .......... .......... .......... .......... .......... 39% 32.7M 0s
00:52:47 2600K .......... .......... .......... .......... .......... 40% 14.3M 0s
00:52:47 2650K .......... .......... .......... .......... .......... 40% 16.7M 0s
00:52:47 2700K .......... .......... .......... .......... .......... 41% 11.1M 0s
00:52:47 2750K .......... .......... .......... .......... .......... 42% 16.0M 0s
00:52:47 2800K .......... .......... .......... .......... .......... 43% 14.0M 0s
00:52:47 2850K .......... .......... .......... .......... .......... 43% 25.7M 0s
00:52:47 2900K .......... .......... .......... .......... .......... 44% 9.48M 0s
00:52:47 2950K .......... .......... .......... .......... .......... 45% 16.7M 0s
00:52:47 3000K .......... .......... .......... .......... .......... 46% 15.8M 0s
00:52:47 3050K .......... .......... .......... .......... .......... 47% 12.9M 0s
00:52:47 3100K .......... .......... .......... .......... .......... 47% 24.1M 0s
00:52:47 3150K .......... .......... .......... .......... .......... 48% 11.6M 0s
00:52:47 3200K .......... .......... .......... .......... .......... 49% 21.5M 0s
00:52:47 3250K .......... .......... .......... .......... .......... 50% 11.6M 0s
00:52:47 3300K .......... .......... .......... .......... .......... 50% 8.76M 0s
00:52:47 3350K .......... .......... .......... .......... .......... 51% 17.7M 0s
00:52:47 3400K .......... .......... .......... .......... .......... 52% 12.5M 0s
00:52:47 3450K .......... .......... .......... .......... .......... 53% 24.5M 0s
00:52:47 3500K .......... .......... .......... .......... .......... 53% 16.4M 0s
00:52:47 3550K .......... .......... .......... .......... .......... 54% 15.2M 0s
00:52:47 3600K .......... .......... .......... .......... .......... 55% 13.7M 0s
00:52:47 3650K .......... .......... .......... .......... .......... 56% 11.3M 0s
00:52:48 3700K .......... .......... .......... .......... .......... 56% 19.2M 0s
00:52:48 3750K .......... .......... .......... .......... .......... 57% 19.6M 0s
00:52:48 3800K .......... .......... .......... .......... .......... 58% 15.4M 0s
00:52:48 3850K .......... .......... .......... .......... .......... 59% 11.8M 0s
00:52:48 3900K .......... .......... .......... .......... .......... 59% 12.7M 0s
00:52:48 3950K .......... .......... .......... .......... .......... 60% 22.9M 0s
00:52:48 4000K .......... .......... .......... .......... .......... 61% 15.6M 0s
00:52:48 4050K .......... .......... .......... .......... .......... 62% 16.9M 0s
00:52:48 4100K .......... .......... .......... .......... .......... 62% 11.8M 0s
00:52:48 4150K .......... .......... .......... .......... .......... 63% 21.0M 0s
00:52:48 4200K .......... .......... .......... .......... .......... 64% 10.7M 0s
00:52:48 4250K .......... .......... .......... .......... .......... 65% 17.8M 0s
00:52:48 4300K .......... .......... .......... .......... .......... 65% 19.5M 0s
00:52:48 4350K .......... .......... .......... .......... .......... 66% 11.7M 0s
00:52:48 4400K .......... .......... .......... .......... .......... 67% 20.1M 0s
00:52:48 4450K .......... .......... .......... .......... .......... 68% 11.5M 0s
00:52:48 4500K .......... .......... .......... .......... .......... 69% 20.0M 0s
00:52:48 4550K .......... .......... .......... .......... .......... 69% 19.0M 0s
00:52:48 4600K .......... .......... .......... .......... .......... 70% 10.7M 0s
00:52:48 4650K .......... .......... .......... .......... .......... 71% 20.1M 0s
00:52:48 4700K .......... .......... .......... .......... .......... 72% 11.2M 0s
00:52:48 4750K .......... .......... .......... .......... .......... 72% 17.9M 0s
00:52:48 4800K .......... .......... .......... .......... .......... 73% 19.1M 0s
00:52:48 4850K .......... .......... .......... .......... .......... 74% 14.9M 0s
00:52:48 4900K .......... .......... .......... .......... .......... 75% 14.2M 0s
00:52:48 4950K .......... .......... .......... .......... .......... 75% 11.9M 0s
00:52:48 5000K .......... .......... .......... .......... .......... 76% 14.8M 0s
00:52:48 5050K .......... .......... .......... .......... .......... 77% 23.0M 0s
00:52:48 5100K .......... .......... .......... .......... .......... 78% 11.4M 0s
00:52:48 5150K .......... .......... .......... .......... .......... 78% 18.0M 0s
00:52:48 5200K .......... .......... .......... .......... .......... 79% 13.0M 0s
00:52:48 5250K .......... .......... .......... .......... .......... 80% 20.6M 0s
00:52:48 5300K .......... .......... .......... .......... .......... 81% 22.0M 0s
00:52:48 5350K .......... .......... .......... .......... .......... 81% 11.4M 0s
00:52:48 5400K .......... .......... .......... .......... .......... 82% 13.6M 0s
00:52:48 5450K .......... .......... .......... .......... .......... 83% 11.5M 0s
00:52:48 5500K .......... .......... .......... .......... .......... 84% 27.8M 0s
00:52:48 5550K .......... .......... .......... .......... .......... 84% 20.8M 0s
00:52:48 5600K .......... .......... .......... .......... .......... 85% 11.0M 0s
00:52:48 5650K .......... .......... .......... .......... .......... 86% 14.7M 0s
00:52:48 5700K .......... .......... .......... .......... .......... 87% 19.9M 0s
00:52:48 5750K .......... .......... .......... .......... .......... 87% 11.9M 0s
00:52:48 5800K .......... .......... .......... .......... .......... 88% 16.9M 0s
00:52:48 5850K .......... .......... .......... .......... .......... 89% 12.1M 0s
00:52:48 5900K .......... .......... .......... .......... .......... 90% 16.3M 0s
00:52:48 5950K .......... .......... .......... .......... .......... 91% 22.3M 0s
00:52:48 6000K .......... .......... .......... .......... .......... 91% 10.1M 0s
00:52:48 6050K .......... .......... .......... .......... .......... 92% 20.0M 0s
00:52:48 6100K .......... .......... .......... .......... .......... 93% 13.2M 0s
00:52:48 6150K .......... .......... .......... .......... .......... 94% 16.1M 0s
00:52:48 6200K .......... .......... .......... .......... .......... 94% 23.0M 0s
00:52:48 6250K .......... .......... .......... .......... .......... 95% 12.7M 0s
00:52:48 6300K .......... .......... .......... .......... .......... 96% 13.9M 0s
00:52:48 6350K .......... .......... .......... .......... .......... 97% 13.8M 0s
00:52:48 6400K .......... .......... .......... .......... .......... 97% 14.8M 0s
00:52:48 6450K .......... .......... .......... .......... .......... 98% 22.8M 0s
00:52:48 6500K .......... .......... .......... .......... .......... 99% 12.7M 0s
00:52:48 6550K .......... .......... .......... .......... . 100% 18.3M=0.5s
00:52:48
00:52:48 2026-02-04 00:52:48 (13.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:52:48
00:52:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:48 --2026-02-04 00:52:48-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:48 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:48 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:48 HTTP request sent, awaiting response... 200 OK
00:52:48 Length: 1732435 (1.7M) [application/java-archive]
00:52:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:52:48
00:52:48 0K .......... .......... .......... .......... .......... 2% 2.93M 1s
00:52:48 50K .......... .......... .......... .......... .......... 5% 6.57M 0s
00:52:48 100K .......... .......... .......... .......... .......... 8% 3.78M 0s
00:52:48 150K .......... .......... .......... .......... .......... 11% 8.83M 0s
00:52:48 200K .......... .......... .......... .......... .......... 14% 9.00M 0s
00:52:48 250K .......... .......... .......... .......... .......... 17% 9.19M 0s
00:52:48 300K .......... .......... .......... .......... .......... 20% 18.3M 0s
00:52:48 350K .......... .......... .......... .......... .......... 23% 14.9M 0s
00:52:48 400K .......... .......... .......... .......... .......... 26% 12.8M 0s
00:52:48 450K .......... .......... .......... .......... .......... 29% 16.7M 0s
00:52:48 500K .......... .......... .......... .......... .......... 32% 18.6M 0s
00:52:48 550K .......... .......... .......... .......... .......... 35% 17.1M 0s
00:52:48 600K .......... .......... .......... .......... .......... 38% 11.9M 0s
00:52:48 650K .......... .......... .......... .......... .......... 41% 12.8M 0s
00:52:48 700K .......... .......... .......... .......... .......... 44% 13.9M 0s
00:52:48 750K .......... .......... .......... .......... .......... 47% 25.4M 0s
00:52:48 800K .......... .......... .......... .......... .......... 50% 16.2M 0s
00:52:48 850K .......... .......... .......... .......... .......... 53% 11.6M 0s
00:52:48 900K .......... .......... .......... .......... .......... 56% 13.5M 0s
00:52:48 950K .......... .......... .......... .......... .......... 59% 12.7M 0s
00:52:48 1000K .......... .......... .......... .......... .......... 62% 15.3M 0s
00:52:48 1050K .......... .......... .......... .......... .......... 65% 33.2M 0s
00:52:48 1100K .......... .......... .......... .......... .......... 67% 11.8M 0s
00:52:48 1150K .......... .......... .......... .......... .......... 70% 13.4M 0s
00:52:48 1200K .......... .......... .......... .......... .......... 73% 12.4M 0s
00:52:48 1250K .......... .......... .......... .......... .......... 76% 10.3M 0s
00:52:48 1300K .......... .......... .......... .......... .......... 79% 108M 0s
00:52:48 1350K .......... .......... .......... .......... .......... 82% 13.8M 0s
00:52:48 1400K .......... .......... .......... .......... .......... 85% 14.0M 0s
00:52:48 1450K .......... .......... .......... .......... .......... 88% 12.0M 0s
00:52:48 1500K .......... .......... .......... .......... .......... 91% 10.1M 0s
00:52:48 1550K .......... .......... .......... .......... .......... 94% 16.4M 0s
00:52:48 1600K .......... .......... .......... .......... .......... 97% 18.2M 0s
00:52:48 1650K .......... .......... .......... .......... . 100% 20.6M=0.1s
00:52:48
00:52:48 2026-02-04 00:52:48 (11.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:52:48
00:52:48 + for x in *.jar
00:52:48 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:52:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:52:48 ++ deactivate nondestructive
00:52:48 ++ '[' -n '' ']'
00:52:48 ++ '[' -n '' ']'
00:52:48 ++ hash -r
00:52:48 ++ '[' -n '' ']'
00:52:48 ++ unset VIRTUAL_ENV
00:52:48 ++ unset VIRTUAL_ENV_PROMPT
00:52:48 ++ '[' '!' nondestructive = nondestructive ']'
00:52:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:52:48 ++ export VIRTUAL_ENV
00:52:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:48 ++ export PATH
00:52:48 ++ '[' -n '' ']'
00:52:48 ++ '[' -z '' ']'
00:52:48 ++ _OLD_VIRTUAL_PS1=
00:52:48 ++ PS1='(.venv3) '
00:52:48 ++ export PS1
00:52:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:52:48 ++ export VIRTUAL_ENV_PROMPT
00:52:48 ++ hash -r
00:52:48 + pip install -U pip
00:52:48 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:52:49 Collecting pip
00:52:49 Using cached pip-26.0-py3-none-any.whl (1.8 MB)
00:52:49 Installing collected packages: pip
00:52:49 Attempting uninstall: pip
00:52:49 Found existing installation: pip 22.3.1
00:52:49 Uninstalling pip-22.3.1:
00:52:49 Successfully uninstalled pip-22.3.1
00:52:50 Successfully installed pip-26.0
00:52:50 WARNING: There was an error checking the latest version of pip.
00:52:50 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:52:50 Collecting zeroc-ice==3.6.5
00:52:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:52:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 17.7 MB/s 0:00:02
00:52:53 Installing collected packages: zeroc-ice
00:52:54 Successfully installed zeroc-ice-3.6.5
00:52:54 + pip install markdown
00:52:54 Collecting markdown
00:52:54 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:52:54 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:52:54 Installing collected packages: markdown
00:52:54 Successfully installed markdown-3.10.1
00:52:54 + pip install reportlab
00:52:55 Collecting reportlab
00:52:55 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:52:55 Collecting pillow>=9.0.0 (from reportlab)
00:52:55 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:52:55 Collecting charset-normalizer (from reportlab)
00:52:55 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:52:55 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:52:55 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:52:56 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:52:56 Installing collected packages: pillow, charset-normalizer, reportlab
00:52:57
00:52:57 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:52:57 + pip install omego
00:52:57 Collecting omego
00:52:57 Using cached omego-0.7.0-py3-none-any.whl
00:52:57 Collecting future (from omego)
00:52:57 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:52:58 Collecting yaclifw>=0.1.1 (from omego)
00:52:58 Using cached yaclifw-0.2.0-py3-none-any.whl
00:52:58 Collecting six (from yaclifw>=0.1.1->omego)
00:52:58 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:52:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:52:58 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:52:58 Installing collected packages: six, future, yaclifw, omego
00:52:58
00:52:58 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:52:58 + pip install tables
00:52:59 Collecting tables
00:52:59 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:52:59 Collecting numpy>=1.20.0 (from tables)
00:52:59 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:52:59 Collecting numexpr>=2.6.2 (from tables)
00:52:59 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:52:59 Collecting packaging (from tables)
00:52:59 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:52:59 Collecting py-cpuinfo (from tables)
00:52:59 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:53:00 Collecting blosc2>=2.3.0 (from tables)
00:53:00 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:53:00 Collecting typing-extensions>=4.4.0 (from tables)
00:53:00 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:53:00 Collecting ndindex (from blosc2>=2.3.0->tables)
00:53:00 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:53:00 Collecting msgpack (from blosc2>=2.3.0->tables)
00:53:00 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:53:00 Collecting requests (from blosc2>=2.3.0->tables)
00:53:00 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:53:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:53:00 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:53:00 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:53:00 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:53:00 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:53:00 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:53:00 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:53:00 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:53:00 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:53:00 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:53:00 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:53:00 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:53:00 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:53:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:53:01 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:53:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:53:01 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:53:01 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:53:01 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:53:01 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:53:01 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:53:04
00:53:04 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:53:04 + pip install jinja2
00:53:05 Collecting jinja2
00:53:05 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:53:05 Collecting MarkupSafe>=2.0 (from jinja2)
00:53:05 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:53:05 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:53:05 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:53:05 Installing collected packages: MarkupSafe, jinja2
00:53:05
00:53:05 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:53:05 + pip install omero-py
00:53:06 Collecting omero-py
00:53:06 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:53:06 Collecting appdirs (from omero-py)
00:53:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:53:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:53:06 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:53:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:53:06 Collecting PyYAML (from omero-py)
00:53:06 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:53:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:53:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:53:06 Collecting portalocker (from omero-py)
00:53:06 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:53:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:53:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:53:06 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:53:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:53:06 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:53:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:53:06 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:53:06 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:53:06 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:53:08
00:53:08 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:53:08 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:53:08 Collecting omero-metadata
00:53:08 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-m5r00gm2/omero-metadata_2b1a794b64214e7498467c50fee72269
00:53:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-m5r00gm2/omero-metadata_2b1a794b64214e7498467c50fee72269
00:53:14 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 0fe7864b1848b15b9be3ec9eb79b0e73d2380887
00:53:14 Installing build dependencies: started
00:53:15 Installing build dependencies: finished with status 'done'
00:53:15 Getting requirements to build wheel: started
00:53:15 Getting requirements to build wheel: finished with status 'done'
00:53:15 Preparing metadata (pyproject.toml): started
00:53:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:53:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:53:15 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:53:15 Collecting pandas (from omero-metadata)
00:53:15 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:53:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:53:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:53:15 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:53:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:53:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:53:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:53:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:53:15 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:53:15 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:53:15 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:53:15 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:53:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:53:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:53:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:53:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:53:15 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:53:16 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:53:16 Building wheels for collected packages: omero-metadata
00:53:16 Building wheel for omero-metadata (pyproject.toml): started
00:53:16 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:53:16 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=71cccc69a17b26d238da2125e4ac37bc1dfb4cd37ea3cfe98563f78efcc3bc7e
00:53:16 Stored in directory: /tmp/pip-ephem-wheel-cache-j2dymgzs/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:53:16 Successfully built omero-metadata
00:53:16 Installing collected packages: python-dateutil, pandas, omero-metadata
00:53:20
00:53:20 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:53:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:53:21 Collecting omero-cli-render
00:53:21 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-w_m6qdb7/omero-cli-render_201e604f62e64f8d973773c7482a7eba
00:53:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-w_m6qdb7/omero-cli-render_201e604f62e64f8d973773c7482a7eba
00:53:21 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:22 Switched to a new branch 'merge_ci'
00:53:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:22 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0706a4458122c908b81bdebfaf4182813af8ac1c
00:53:22 Installing build dependencies: started
00:53:22 Installing build dependencies: finished with status 'done'
00:53:22 Getting requirements to build wheel: started
00:53:23 Getting requirements to build wheel: finished with status 'done'
00:53:23 Preparing metadata (pyproject.toml): started
00:53:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:53:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:53:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:53:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:53:23 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:53:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:53:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:53:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:53:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:53:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:53:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:53:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:53:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:53:23 Building wheels for collected packages: omero-cli-render
00:53:23 Building wheel for omero-cli-render (pyproject.toml): started
00:53:23 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:53:23 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=0ca723735fe834dab1ab8cbf84e4b271d235ca094a86b6d370d9125c4177cf28
00:53:23 Stored in directory: /tmp/pip-ephem-wheel-cache-2u_mt8m8/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:53:23 Successfully built omero-cli-render
00:53:23 Installing collected packages: omero-cli-render
00:53:23 Successfully installed omero-cli-render-0.8.2.dev0
00:53:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:53:24 Collecting omero-cli-duplicate
00:53:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-w25_gj0j/omero-cli-duplicate_77cbbc1919d249a49b29ad70e05196c4
00:53:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-w25_gj0j/omero-cli-duplicate_77cbbc1919d249a49b29ad70e05196c4
00:53:24 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:25 Switched to a new branch 'merge_ci'
00:53:25 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6758e5b3b81875e17f1eefaed185f3afebd240a6
00:53:25 Installing build dependencies: started
00:53:25 Installing build dependencies: finished with status 'done'
00:53:25 Getting requirements to build wheel: started
00:53:26 Getting requirements to build wheel: finished with status 'done'
00:53:26 Preparing metadata (pyproject.toml): started
00:53:26 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:26 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:53:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:53:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:53:26 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:53:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:53:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:53:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:53:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:53:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:53:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:53:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:53:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:53:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:53:26 Building wheels for collected packages: omero-cli-duplicate
00:53:26 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:53:26 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:53:26 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=6d7b469b5653fc4a5734cdb930e31a865d50bda04e58dc49774075ac506ab760
00:53:26 Stored in directory: /tmp/pip-ephem-wheel-cache-56ctmqpb/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:53:26 Successfully built omero-cli-duplicate
00:53:26 Installing collected packages: omero-cli-duplicate
00:53:26 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:53:26 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:53:26 Collecting omero-cli-zarr
00:53:26 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-epoktcxp/omero-cli-zarr_6b273dd45cdc462c8b99434e998bcda7
00:53:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-epoktcxp/omero-cli-zarr_6b273dd45cdc462c8b99434e998bcda7
00:53:27 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:28 Switched to a new branch 'merge_ci'
00:53:28 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:28 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 63894c1b2e4d56939b909303c9904d9c91509b89
00:53:28 Installing build dependencies: started
00:53:28 Installing build dependencies: finished with status 'done'
00:53:28 Getting requirements to build wheel: started
00:53:29 Getting requirements to build wheel: finished with status 'done'
00:53:29 Installing backend dependencies: started
00:53:29 Installing backend dependencies: finished with status 'done'
00:53:29 Preparing metadata (pyproject.toml): started
00:53:30 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:30 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:53:30 Collecting ome-zarr<0.12.0,>=0.5.0 (from omero-cli-zarr)
00:53:30 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
00:53:30 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.4.2)
00:53:30 Collecting dask (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:30 Using cached dask-2026.1.2-py3-none-any.whl.metadata (3.8 kB)
00:53:30 Collecting zarr<3,>=2.8.1 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:30 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
00:53:31 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:31 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
00:53:31 Collecting aiohttp<4 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:31 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:53:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.32.5)
00:53:31 Collecting scikit-image (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:31 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:53:32 Collecting toolz (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:32 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:53:32 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:32 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:53:32 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:32 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:53:32 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:32 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:53:32 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:53:32 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:53:33 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:53:33 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:53:33 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.11)
00:53:33 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached asciitree-0.3.3-py3-none-any.whl
00:53:33 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached fasteners-0.20-py3-none-any.whl.metadata (4.8 kB)
00:53:33 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
00:53:33 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:53:33 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (4.15.0)
00:53:33 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB)
00:53:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:53:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:53:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:53:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
00:53:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:53:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:53:33 Collecting click>=8.1 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:33 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:53:34 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:34 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:53:34 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (26.0)
00:53:34 Collecting partd>=1.4.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:34 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:53:34 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:34 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:53:34 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:34 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:53:34 Collecting locket (from partd>=1.4.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:34 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:53:34 Collecting wrapt<3,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Downloading wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:53:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.4.4)
00:53:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.6.3)
00:53:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2026.1.4)
00:53:36 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
00:53:36 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:53:36 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
00:53:36 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.9.0.post0)
00:53:36 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:53:36 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (1.17.0)
00:53:36 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:36 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:53:37 Collecting networkx>=3.0 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:37 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:53:37 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:37 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:53:37 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:37 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:53:37 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:53:37 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:53:37 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
00:53:37 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:53:37 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:53:37 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:53:37 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
00:53:37 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
00:53:37 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:53:38 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:53:38 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:53:38 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:53:38 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
00:53:38 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:53:38 Using cached dask-2026.1.2-py3-none-any.whl (1.5 MB)
00:53:38 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:53:38 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:53:38 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:53:38 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:53:38 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:53:38 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:53:38 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:53:38 Downloading wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:53:38 Using cached fasteners-0.20-py3-none-any.whl (18 kB)
00:53:38 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:53:38 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
00:53:38 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB)
00:53:38 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:53:38 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
00:53:38 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:53:38 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:53:38 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:53:38 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:53:38 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:53:38 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:53:39 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:53:39 Building wheels for collected packages: omero-cli-zarr
00:53:39 Building wheel for omero-cli-zarr (pyproject.toml): started
00:53:39 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:53:39 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev132+g63894c1-py3-none-any.whl size=43136 sha256=cc0fdfa0b0379bb5fb7f259ba5d535e202b9eee134dd5959ee01ea76a25554a0
00:53:39 Stored in directory: /tmp/pip-ephem-wheel-cache-hrwl5nhu/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:53:39 Successfully built omero-cli-zarr
00:53:39 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:53:50
00:53:50 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.2 deprecated-1.3.1 fasteners-0.20 frozenlist-1.8.0 fsspec-2026.1.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.5.5.dev132+g63894c1 partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-2.18.7 zipp-3.23.0
00:53:50 + pip install omero-certificates
00:53:51 Collecting omero-certificates
00:53:51 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:53:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:53:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:53:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:53:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:53:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:53:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:53:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:53:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:53:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:53:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:53:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:53:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:53:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:53:51 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:53:51 Installing collected packages: omero-certificates
00:53:51 Successfully installed omero-certificates-0.4.0
00:53:51 + for x in *.tar.gz
00:53:51 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:53:51 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:53:51 Installing build dependencies: started
00:53:52 Installing build dependencies: finished with status 'done'
00:53:52 Getting requirements to build wheel: started
00:53:52 Getting requirements to build wheel: finished with status 'done'
00:53:52 Preparing metadata (pyproject.toml): started
00:53:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:52 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:53:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:53:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:53:52 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:53:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:53:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:53:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:53:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:53:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:53:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:53:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:53:53 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:53:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:53:53 Building wheels for collected packages: omero-dropbox
00:53:53 Building wheel for omero-dropbox (pyproject.toml): started
00:53:53 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:53:53 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=5582a49263c4949f704c09773af73a7aa0a1cc98c1960c56fe275d315ec23a0a
00:53:53 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:53:53 Successfully built omero-dropbox
00:53:53 Installing collected packages: omero-dropbox
00:53:53 Successfully installed omero-dropbox-5.7.1.dev0
00:53:53 + for x in *.tar.gz
00:53:53 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:53:53 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:53:53 Installing build dependencies: started
00:53:54 Installing build dependencies: finished with status 'done'
00:53:54 Getting requirements to build wheel: started
00:53:54 Getting requirements to build wheel: finished with status 'done'
00:53:54 Preparing metadata (pyproject.toml): started
00:53:55 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:55 Building wheels for collected packages: omero_marshal
00:53:55 Building wheel for omero_marshal (pyproject.toml): started
00:53:55 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:53:55 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=aba7fc7f7facfb3e0b7c701f74706ca0be0d5291a71799c5cfb547d8a9b79b7a
00:53:55 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:53:55 Successfully built omero_marshal
00:53:55 Installing collected packages: omero_marshal
00:53:55 Successfully installed omero_marshal-0.9.2.dev0
00:53:55 + for x in *.tar.gz
00:53:55 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:53:56 Processing ./omero_py-5.22.0.dev0.tar.gz
00:53:56 Installing build dependencies: started
00:53:57 Installing build dependencies: finished with status 'done'
00:53:57 Getting requirements to build wheel: started
00:53:57 Getting requirements to build wheel: finished with status 'done'
00:53:57 Preparing metadata (pyproject.toml): started
00:53:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:53:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:53:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.2)
00:53:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:53:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:53:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:53:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:53:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:53:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:53:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:53:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:53:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:53:57 Building wheels for collected packages: omero-py
00:53:57 Building wheel for omero-py (pyproject.toml): started
00:53:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:53:58 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786540 sha256=5e11d50997605eb85f1a23e2dd529cbd1b60e52f8f8bec4d74ff9a8534cb1ca8
00:53:58 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:53:58 Successfully built omero-py
00:53:58 Installing collected packages: omero-py
00:53:58 Attempting uninstall: omero-py
00:53:58 Found existing installation: omero-py 5.21.3
00:53:58 Uninstalling omero-py-5.21.3:
00:53:59 Successfully uninstalled omero-py-5.21.3
00:54:01 Successfully installed omero-py-5.22.0.dev0
00:54:01 + for x in *.tar.gz
00:54:01 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:54:01 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:54:01 Installing build dependencies: started
00:54:02 Installing build dependencies: finished with status 'done'
00:54:02 Getting requirements to build wheel: started
00:54:02 Getting requirements to build wheel: finished with status 'done'
00:54:02 Preparing metadata (pyproject.toml): started
00:54:02 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:02 Building wheels for collected packages: omero-scripts
00:54:02 Building wheel for omero-scripts (pyproject.toml): started
00:54:03 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:54:03 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=d0e45fb82ee1c138da14caf31c7a05a1ccaf90e141d5eca9bab93d79d9d87724
00:54:03 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:54:03 Successfully built omero-scripts
00:54:03 Installing collected packages: omero-scripts
00:54:03 Successfully installed omero-scripts-5.10.1.dev0
00:54:03 + for x in *.tar.gz
00:54:03 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:54:03 Processing ./omero_web-5.30.2.dev0.tar.gz
00:54:04 Installing build dependencies: started
00:54:04 Installing build dependencies: finished with status 'done'
00:54:04 Getting requirements to build wheel: started
00:54:05 Getting requirements to build wheel: finished with status 'done'
00:54:05 Preparing metadata (pyproject.toml): started
00:54:05 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:05 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:54:05 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:54:05 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:54:05 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:54:05 Downloading django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:54:05 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:54:05 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:54:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:54:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:54:06 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:54:06 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:54:06 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:54:06 Using cached gunicorn-25.0.1-py3-none-any.whl.metadata (4.7 kB)
00:54:06 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:54:06 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:54:06 Collecting pytz (from omero-web==5.30.2.dev0)
00:54:06 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:54:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:54:06 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:54:06 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:54:06 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:54:06 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:54:06 Downloading asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:54:06 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:54:06 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:54:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:54:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:54:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
00:54:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:54:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:54:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:54:06 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:54:06 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:54:06 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:54:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:54:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:54:06 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:54:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:54:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:54:06 Downloading django-5.2.11-py3-none-any.whl (8.3 MB)
00:54:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 16.9 MB/s 0:00:00
00:54:07 Downloading asgiref-3.11.1-py3-none-any.whl (24 kB)
00:54:07 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:54:07 Using cached gunicorn-25.0.1-py3-none-any.whl (169 kB)
00:54:07 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:54:07 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:54:07 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:54:07 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:54:07 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:54:07 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:54:07 Building wheels for collected packages: omero-web
00:54:07 Building wheel for omero-web (pyproject.toml): started
00:54:08 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:54:08 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=a692dd13380ae2bae08aa250a2ad7d602f86d0af01683fe55ecc2b12aa5ecc02
00:54:08 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:54:08 Successfully built omero-web
00:54:08 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:54:11
00:54:11 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:54:11 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:54:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:54:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:54:11 --2026-02-04 00:54:11-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:54:11 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ...
00:54:11 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
00:54:11 HTTP request sent, awaiting response... 200 OK
00:54:11 Length: 136943 (134K) [text/plain]
00:54:11 Saving to: ‘Figure_To_Pdf.py’
00:54:11
00:54:11 0K .......... .......... .......... .......... .......... 37% 2.75M 0s
00:54:11 50K .......... .......... .......... .......... .......... 74% 3.96M 0s
00:54:11 100K .......... .......... .......... ... 100% 24.7M=0.03s
00:54:11
00:54:11 2026-02-04 00:54:11 (4.16 MB/s) - ‘Figure_To_Pdf.py’ saved [136943/136943]
00:54:11
00:54:11 + chmod 755 Figure_To_Pdf.py
00:54:11 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:54:11 + omero config set omero.db.name OMERO-server
00:54:13 + omero config set omero.db.host pg
00:54:15 + omero config set omero.db.user postgres
00:54:17 + omero config set omero.data.dir /home/omero/omero-server-data
00:54:18 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:54:20 + omero config set omero.db.poolsize 25
00:54:22 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:54:23 + omero config set omero.security.trustStorePassword changeit
00:54:25 + omero config set omero.mail.config true
00:54:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:54:29 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:54:30 + omero certificates
00:54:32 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:54:32 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:54:32 + '[' false = true ']'
00:54:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:54:32 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:54:32 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG dbcommand => upgrade
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG dbhost => localhost
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG dbname => OMERO-server
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG dbpass => omero
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG dbuser => omero
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG rootpass => omero
00:54:32 2026-02-04 00:54:32,847 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:54:32 2026-02-04 00:54:32,848 [omego.extern] INFO Executing : omero version
00:54:34 OMERO.py version:
00:54:34 OMERO.server version:
00:54:34 5.6.3-588-be163bcc16-ice36-b43
00:54:34 5.22.0.dev0
00:54:34 2026-02-04 00:54:34,629 [omego.extern] INFO Completed [1.782 s]
00:54:34 2026-02-04 00:54:34,630 [omego.extern] DEBUG Using omero CLI from omero
00:54:34 2026-02-04 00:54:34,630 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:54:34 2026-02-04 00:54:34,630 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:34 2026-02-04 00:54:34,630 [omego.extern] INFO Executing : omero config get --show-password
00:54:36 2026-02-04 00:54:36,363 [omego.extern] INFO Completed [1.733 s]
00:54:36 2026-02-04 00:54:36,363 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:36 2026-02-04 00:54:36,363 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:54:36 2026-02-04 00:54:36,730 [omego.extern] INFO Completed [0.367 s]
00:54:36 2026-02-04 00:54:36,730 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:54:36 2026-02-04 00:54:36,731 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:54:36
00:54:36 2026-02-04 00:54:36,731 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:36 2026-02-04 00:54:36,731 [omego.extern] INFO Executing : omero config get --show-password
00:54:38 2026-02-04 00:54:38,437 [omego.extern] INFO Completed [1.707 s]
00:54:38 2026-02-04 00:54:38,437 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:38 2026-02-04 00:54:38,437 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:54:38 2026-02-04 00:54:38,685 [omego.extern] INFO Completed [0.248 s]
00:54:38 2026-02-04 00:54:38,685 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
00:54:38 2026-02-04 00:54:38,685 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:54:38 2026-02-04 00:54:38,685 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:38 2026-02-04 00:54:38,685 [omego.extern] INFO Executing : omero config get --show-password
00:54:40 2026-02-04 00:54:40,380 [omego.extern] INFO Completed [1.694 s]
00:54:40 2026-02-04 00:54:40,380 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:40 2026-02-04 00:54:40,380 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:54:41 2026-02-04 00:54:41,085 [omego.extern] INFO Completed [0.705 s]
00:54:41 2026-02-04 00:54:41,085 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:54:41 2026-02-04 00:54:41,085 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:54:41 2026-02-04 00:54:41,086 [ omego.db] INFO Database is already at OMERO5.4__0
00:54:41 + export LANG=en_US.UTF-8
00:54:41 + LANG=en_US.UTF-8
00:54:41 + export LANGUAGE=en_US:en
00:54:41 + LANGUAGE=en_US:en
00:54:41 + export LC_ALL=en_US.UTF-8
00:54:41 + LC_ALL=en_US.UTF-8
00:54:41 + BUILD_ID=DONT_KILL_ME
00:54:41 + omero admin start
00:54:46 No descriptor given. Using etc/grid/default.xml
00:54:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:54:56 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:54:56 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:54:56 Waiting on startup. Use CTRL-C to exit
00:54:56 + omero admin waitup
00:54:58 Waiting on startup. Use CTRL-C to exit
00:54:58 + omero admin diagnostics
00:55:00
00:55:00 ================================================================================
00:55:00 OMERO Diagnostics (admin)
00:55:00 ================================================================================
00:55:00
00:55:00 Commands: java -version 17.0.17 (/usr/bin/java)
00:55:00 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:55:00 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:55:00 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:55:00 Commands: psql --version 16.11 (/usr/bin/psql)
00:55:00 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:55:00
00:55:00 Component: OMERO.py 5.22.0.dev0
00:55:00 Component: OMERO.server 5.6.3-588-be163bcc16-ice36-b43
00:55:00
00:55:00 Server: icegridnode running
00:55:00 Server: Blitz-0 active (pid = 3344, enabled)
00:55:00 Server: Indexer-0 activating (enabled)
00:55:00 Server: OMERO.Glacier2 active (pid = 3377, enabled)
00:55:00 Server: OMERO.IceStorm active (pid = 3407, enabled)
00:55:00 Server: Processor-0 active (pid = 3399, enabled)
00:55:00 Server: Tables-0 active (pid = 3417, enabled)
00:55:00
00:55:00 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:55:00 Log files: Blitz-0.log 30.9 KB errors=0 warnings=1
00:55:00 Log files: DropBox.log n/a
00:55:00 Log files: FileServer.log n/a
00:55:00 Log files: Indexer-0.log 598 B
00:55:00 Log files: MonitorServer.log n/a
00:55:00 Log files: Processor-0.log 735 B
00:55:00 Log files: Tables-0.log 961 B
00:55:00 Log files: TestDropBox.log n/a
00:55:00 Log files: master.err empty
00:55:00 Log files: master.out 30.1 KB
00:55:00 Log files: Total size 0.06 MB
00:55:00
00:55:00
00:55:00 Environment:OMERO_HOME=(unset)
00:55:00 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:55:00 Environment:OMERO_NODE=(unset)
00:55:00 Environment:OMERO_MASTER=(unset)
00:55:00 Environment:OMERO_USERDIR=(unset)
00:55:00 Environment:OMERO_TMPDIR=(unset)
00:55:00 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:55:00 Environment:PYTHONPATH=(unset)
00:55:00 Environment:ICE_HOME=/opt/ice-3.6.5
00:55:00 Environment:LD_LIBRARY_PATH=(unset)
00:55:00 Environment:DYLD_LIBRARY_PATH=(unset)
00:55:00
00:55:00 OMERO SSL port:4064
00:55:00 OMERO TCP port:4063
00:55:00 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:55:00 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:55:00
00:55:00 JVM settings: Blitz-${index} -Xmx7200m
00:55:00 JVM settings: Indexer-${index} -Xmx4800m
00:55:00 JVM settings: PixelData-${index} -Xmx7200m
00:55:00 JVM settings: Repository-${index} -Xmx4800m
00:55:00
00:55:00 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
00:55:00 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
00:55:00 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
00:55:00 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
00:55:00 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:55:00 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:55:00 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 7c777e90bcabf229d0030c712007d23bc381adb0
00:55:01 + deactivate
00:55:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:55:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:55:01 + export PATH
00:55:01 + unset _OLD_VIRTUAL_PATH
00:55:01 + '[' -n '' ']'
00:55:01 + hash -r
00:55:01 + '[' -n '' ']'
00:55:01 + unset VIRTUAL_ENV
00:55:01 + unset VIRTUAL_ENV_PROMPT
00:55:01 + '[' '!' '' = nondestructive ']'
00:55:01 + unset -f deactivate
00:55:01 Finished: SUCCESS
