09:48:36 Started by user devspace
09:48:36 Running as SYSTEM
09:48:36 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:48:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2835017519070233408.sh
09:48:36 + source /home/settings.env
09:48:36 ++ OMERO_DB_HOST=pg
09:48:36 ++ OMERO_DB_USER=postgres
09:48:36 ++ OMERO_DB_PASS=
09:48:36 ++ OMERO_ROOT_PASS=omero
09:48:36 ++ OMERO_DATA_DIR=/OMERO
09:48:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:48:36 + OMERO_DB_NAME=OMERO-server
09:48:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:48:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:48:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:48:36 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:48:36 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:48:36 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:48:36 ++ deactivate nondestructive
09:48:36 ++ '[' -n '' ']'
09:48:36 ++ '[' -n '' ']'
09:48:36 ++ hash -r
09:48:36 ++ '[' -n '' ']'
09:48:36 ++ unset VIRTUAL_ENV
09:48:36 ++ unset VIRTUAL_ENV_PROMPT
09:48:36 ++ '[' '!' nondestructive = nondestructive ']'
09:48:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:48:36 ++ export VIRTUAL_ENV
09:48:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:48:36 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:48:36 ++ export PATH
09:48:36 ++ '[' -n '' ']'
09:48:36 ++ '[' -z '' ']'
09:48:36 ++ _OLD_VIRTUAL_PS1=
09:48:36 ++ PS1='(.venv3) '
09:48:36 ++ export PS1
09:48:36 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:48:36 ++ export VIRTUAL_ENV_PROMPT
09:48:36 ++ hash -r
09:48:36 + omero admin stop
09:48:38 Waiting on shutdown. Use CTRL-C to exit
09:48:38 .+ sleep 5
09:48:53 + deactivate
09:48:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:48:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:48:53 + export PATH
09:48:53 + unset _OLD_VIRTUAL_PATH
09:48:53 + '[' -n '' ']'
09:48:53 + hash -r
09:48:53 + '[' -n '' ']'
09:48:53 + unset VIRTUAL_ENV
09:48:53 + unset VIRTUAL_ENV_PROMPT
09:48:53 + '[' '!' '' = nondestructive ']'
09:48:53 + unset -f deactivate
09:48:53 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:48:54 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
09:48:57 + '[' false = true ']'
09:48:57 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:48:57 Skipping PURGE_DATA:CleanDbAndRepo
09:48:57 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:48:59 Copied 1 artifact from "OMERO-build" build number 44
09:48:59 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 40
09:48:59 Copied 2 artifacts from "OMERO-build-build" build number 44
09:48:59 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 38
09:48:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12324298094951859460.sh
09:48:59 + source /home/settings.env
09:48:59 ++ OMERO_DB_HOST=pg
09:48:59 ++ OMERO_DB_USER=postgres
09:48:59 ++ OMERO_DB_PASS=
09:48:59 ++ OMERO_ROOT_PASS=omero
09:48:59 ++ OMERO_DATA_DIR=/OMERO
09:48:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:48:59 + OMERO_DB_NAME=OMERO-server
09:48:59 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:48:59 + mkdir -p /home/omero/omero-server-data
09:48:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:48:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:48:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:48:59 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:48:59 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:48:59 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:48:59 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:48:59 ++ ls OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44.zip
09:48:59 + ZIP=OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44.zip
09:48:59 + '[' '!' -z '' ']'
09:48:59 + DIST=OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44
09:48:59 + unzip OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44.zip
09:48:59 Archive: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44.zip
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/blitz/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/grid/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/profiles/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/error/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/grid/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/janelia/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/matplotlib/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/ncsa_paledit/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/seaborn/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/luts/wcif/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/analysis_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/annotation_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/export_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/figure_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/import_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/scripts/omero/util_scripts/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/server/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/share/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/share/licenses/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/misc/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__1/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__10/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__11/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__2/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__3/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__4/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__5/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__6/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__7/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__8/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3A__9/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3__4/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3__5/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3__6/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO3__7/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.1__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.2__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.2__0/t/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.3__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.4__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.0__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.1__1/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.2__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__1/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__2/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__3/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/var/
09:48:59 creating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/var/tmp/
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/LICENSE.txt
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/backup.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/blitz/mail-senders.example
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/blitz/mail-server.example
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/build.properties
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/env.bat
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/env.sh
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/hibernate.properties
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/ice.config
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/logback-cli.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/logback-indexing-cli.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/logback-indexing.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/logback.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/mime.types
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/node1.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/node2.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/omero.properties
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/profiles/psql
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/rollover.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/Windows.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/error/maintainance.html
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/grid/README
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/grid/default.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/grid/templates.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/grid/windefault.xml
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/ice.config
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/internal.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/master.cfg
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/templates/robot.template
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/etc/testdropbox.config
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/history.rst
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/OMEZarrReader.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/accessors-smart.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/activation.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aggdesigner-algorithm.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aircompressor.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/antlr.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aopalliance.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/apiguardian-api.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/asm.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/avatica-core.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/avatica-metrics.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aws-java-sdk-core.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aws-java-sdk-kms.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/aws-java-sdk-s3.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/base.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-anim.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-awt-util.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-bridge.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-codec.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-constants.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-css.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-dom.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-ext.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-gvt.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-i18n.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-parser.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-script.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-shared-resources.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-svg-dom.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-svggen.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-transcoder.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-util.jar
09:48:59 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/lib/client/batik-xml.jar
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09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO4__0/OMERO3A__11.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/psql-footer.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/psql-header.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/schema.sql
09:49:02 inflating: OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44/sql/psql/OMERO5.4__0/views.sql
09:49:02 + rm -f OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44.zip
09:49:02 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-588-0f5c5e9159-ice36-b44 /home/omero/workspace/OMERO-server/OMERO.server
09:49:02 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
09:49:02 + awsSdkVersion=2.34.6
09:49:02 + jacksonVersion=2.20.0
09:49:02 + logbackVersion=1.3.14
09:49:02 + zarrJavaVersion=0.0.10
09:49:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
09:49:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:02 --2026-02-05 09:49:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
09:49:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:02 HTTP request sent, awaiting response... 200 OK
09:49:02 Length: 4083366 (3.9M) [application/java-archive]
09:49:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
09:49:02
09:49:02 0K .......... .......... .......... .......... .......... 1% 31.2M 0s
09:49:02 50K .......... .......... .......... .......... .......... 2% 3.42M 1s
09:49:02 100K .......... .......... .......... .......... .......... 3% 185M 0s
09:49:02 150K .......... .......... .......... .......... .......... 5% 3.72M 1s
09:49:02 200K .......... .......... .......... .......... .......... 6% 102M 0s
09:49:02 250K .......... .......... .......... .......... .......... 7% 60.5M 0s
09:49:02 300K .......... .......... .......... .......... .......... 8% 111M 0s
09:49:02 350K .......... .......... .......... .......... .......... 10% 56.7M 0s
09:49:02 400K .......... .......... .......... .......... .......... 11% 4.24M 0s
09:49:02 450K .......... .......... .......... .......... .......... 12% 310M 0s
09:49:02 500K .......... .......... .......... .......... .......... 13% 45.5M 0s
09:49:02 550K .......... .......... .......... .......... .......... 15% 293M 0s
09:49:02 600K .......... .......... .......... .......... .......... 16% 54.2M 0s
09:49:02 650K .......... .......... .......... .......... .......... 17% 4.51M 0s
09:49:02 700K .......... .......... .......... .......... .......... 18% 54.9M 0s
09:49:02 750K .......... .......... .......... .......... .......... 20% 46.6M 0s
09:49:02 800K .......... .......... .......... .......... .......... 21% 123M 0s
09:49:02 850K .......... .......... .......... .......... .......... 22% 81.8M 0s
09:49:02 900K .......... .......... .......... .......... .......... 23% 5.18M 0s
09:49:02 950K .......... .......... .......... .......... .......... 25% 13.5M 0s
09:49:02 1000K .......... .......... .......... .......... .......... 26% 202M 0s
09:49:02 1050K .......... .......... .......... .......... .......... 27% 68.9M 0s
09:49:02 1100K .......... .......... .......... .......... .......... 28% 60.9M 0s
09:49:02 1150K .......... .......... .......... .......... .......... 30% 5.74M 0s
09:49:02 1200K .......... .......... .......... .......... .......... 31% 14.7M 0s
09:49:02 1250K .......... .......... .......... .......... .......... 32% 53.4M 0s
09:49:02 1300K .......... .......... .......... .......... .......... 33% 50.1M 0s
09:49:02 1350K .......... .......... .......... .......... .......... 35% 230M 0s
09:49:02 1400K .......... .......... .......... .......... .......... 36% 5.86M 0s
09:49:02 1450K .......... .......... .......... .......... .......... 37% 10.9M 0s
09:49:02 1500K .......... .......... .......... .......... .......... 38% 25.3M 0s
09:49:02 1550K .......... .......... .......... .......... .......... 40% 12.9M 0s
09:49:02 1600K .......... .......... .......... .......... .......... 41% 17.7M 0s
09:49:02 1650K .......... .......... .......... .......... .......... 42% 24.7M 0s
09:49:02 1700K .......... .......... .......... .......... .......... 43% 14.4M 0s
09:49:02 1750K .......... .......... .......... .......... .......... 45% 25.1M 0s
09:49:02 1800K .......... .......... .......... .......... .......... 46% 16.8M 0s
09:49:02 1850K .......... .......... .......... .......... .......... 47% 15.7M 0s
09:49:02 1900K .......... .......... .......... .......... .......... 48% 15.3M 0s
09:49:02 1950K .......... .......... .......... .......... .......... 50% 18.7M 0s
09:49:02 2000K .......... .......... .......... .......... .......... 51% 19.6M 0s
09:49:02 2050K .......... .......... .......... .......... .......... 52% 19.0M 0s
09:49:02 2100K .......... .......... .......... .......... .......... 53% 17.0M 0s
09:49:02 2150K .......... .......... .......... .......... .......... 55% 15.8M 0s
09:49:02 2200K .......... .......... .......... .......... .......... 56% 18.1M 0s
09:49:02 2250K .......... .......... .......... .......... .......... 57% 19.8M 0s
09:49:02 2300K .......... .......... .......... .......... .......... 58% 17.2M 0s
09:49:02 2350K .......... .......... .......... .......... .......... 60% 15.2M 0s
09:49:02 2400K .......... .......... .......... .......... .......... 61% 20.2M 0s
09:49:02 2450K .......... .......... .......... .......... .......... 62% 15.3M 0s
09:49:02 2500K .......... .......... .......... .......... .......... 63% 16.8M 0s
09:49:02 2550K .......... .......... .......... .......... .......... 65% 17.1M 0s
09:49:02 2600K .......... .......... .......... .......... .......... 66% 20.2M 0s
09:49:02 2650K .......... .......... .......... .......... .......... 67% 38.3M 0s
09:49:02 2700K .......... .......... .......... .......... .......... 68% 10.5M 0s
09:49:02 2750K .......... .......... .......... .......... .......... 70% 29.3M 0s
09:49:02 2800K .......... .......... .......... .......... .......... 71% 13.7M 0s
09:49:02 2850K .......... .......... .......... .......... .......... 72% 19.0M 0s
09:49:02 2900K .......... .......... .......... .......... .......... 73% 30.3M 0s
09:49:02 2950K .......... .......... .......... .......... .......... 75% 12.6M 0s
09:49:02 3000K .......... .......... .......... .......... .......... 76% 23.8M 0s
09:49:02 3050K .......... .......... .......... .......... .......... 77% 12.1M 0s
09:49:02 3100K .......... .......... .......... .......... .......... 78% 22.1M 0s
09:49:02 3150K .......... .......... .......... .......... .......... 80% 21.3M 0s
09:49:02 3200K .......... .......... .......... .......... .......... 81% 15.4M 0s
09:49:02 3250K .......... .......... .......... .......... .......... 82% 23.1M 0s
09:49:02 3300K .......... .......... .......... .......... .......... 84% 23.8M 0s
09:49:02 3350K .......... .......... .......... .......... .......... 85% 12.2M 0s
09:49:02 3400K .......... .......... .......... .......... .......... 86% 20.0M 0s
09:49:02 3450K .......... .......... .......... .......... .......... 87% 16.7M 0s
09:49:02 3500K .......... .......... .......... .......... .......... 89% 20.6M 0s
09:49:02 3550K .......... .......... .......... .......... .......... 90% 25.6M 0s
09:49:02 3600K .......... .......... .......... .......... .......... 91% 11.9M 0s
09:49:02 3650K .......... .......... .......... .......... .......... 92% 18.0M 0s
09:49:02 3700K .......... .......... .......... .......... .......... 94% 17.6M 0s
09:49:02 3750K .......... .......... .......... .......... .......... 95% 22.5M 0s
09:49:02 3800K .......... .......... .......... .......... .......... 96% 20.4M 0s
09:49:02 3850K .......... .......... .......... .......... .......... 97% 13.4M 0s
09:49:02 3900K .......... .......... .......... .......... .......... 99% 20.2M 0s
09:49:02 3950K .......... .......... .......... ....... 100% 28.8M=0.2s
09:49:02
09:49:02 2026-02-05 09:49:02 (16.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
09:49:02
09:49:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
09:49:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:02 --2026-02-05 09:49:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
09:49:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:02 HTTP request sent, awaiting response... 200 OK
09:49:02 Length: 234962 (229K) [application/java-archive]
09:49:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
09:49:02
09:49:02 0K .......... .......... .......... .......... .......... 21% 3.32M 0s
09:49:02 50K .......... .......... .......... .......... .......... 43% 8.78M 0s
09:49:02 100K .......... .......... .......... .......... .......... 65% 4.57M 0s
09:49:02 150K .......... .......... .......... .......... .......... 87% 10.4M 0s
09:49:02 200K .......... .......... ......... 100% 10.4M=0.04s
09:49:02
09:49:02 2026-02-05 09:49:02 (5.83 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
09:49:02
09:49:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
09:49:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:02 --2026-02-05 09:49:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
09:49:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:03 HTTP request sent, awaiting response... 200 OK
09:49:03 Length: 192161 (188K) [application/java-archive]
09:49:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
09:49:03
09:49:03 0K .......... .......... .......... .......... .......... 26% 33.7M 0s
09:49:03 50K .......... .......... .......... .......... .......... 53% 3.46M 0s
09:49:03 100K .......... .......... .......... .......... .......... 79% 161M 0s
09:49:03 150K .......... .......... .......... ....... 100% 2.70M=0.03s
09:49:03
09:49:03 2026-02-05 09:49:03 (6.22 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
09:49:03
09:49:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
09:49:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:03 --2026-02-05 09:49:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
09:49:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:03 HTTP request sent, awaiting response... 200 OK
09:49:03 Length: 10263 (10K) [application/java-archive]
09:49:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’
09:49:03
09:49:03 0K .......... 100% 50.0M=0s
09:49:03
09:49:03 2026-02-05 09:49:03 (50.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’ saved [10263/10263]
09:49:03
09:49:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
09:49:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:03 --2026-02-05 09:49:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
09:49:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:03 HTTP request sent, awaiting response... 200 OK
09:49:03 Length: 1037104 (1013K) [application/java-archive]
09:49:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
09:49:03
09:49:03 0K .......... .......... .......... .......... .......... 4% 33.9M 0s
09:49:03 50K .......... .......... .......... .......... .......... 9% 3.58M 0s
09:49:03 100K .......... .......... .......... .......... .......... 14% 98.1M 0s
09:49:03 150K .......... .......... .......... .......... .......... 19% 3.71M 0s
09:49:03 200K .......... .......... .......... .......... .......... 24% 82.4M 0s
09:49:03 250K .......... .......... .......... .......... .......... 29% 55.8M 0s
09:49:03 300K .......... .......... .......... .......... .......... 34% 82.2M 0s
09:49:03 350K .......... .......... .......... .......... .......... 39% 58.0M 0s
09:49:03 400K .......... .......... .......... .......... .......... 44% 4.27M 0s
09:49:03 450K .......... .......... .......... .......... .......... 49% 233M 0s
09:49:03 500K .......... .......... .......... .......... .......... 54% 42.5M 0s
09:49:03 550K .......... .......... .......... .......... .......... 59% 230M 0s
09:49:03 600K .......... .......... .......... .......... .......... 64% 47.4M 0s
09:49:03 650K .......... .......... .......... .......... .......... 69% 4.30M 0s
09:49:03 700K .......... .......... .......... .......... .......... 74% 197M 0s
09:49:03 750K .......... .......... .......... .......... .......... 78% 44.6M 0s
09:49:03 800K .......... .......... .......... .......... .......... 83% 147M 0s
09:49:03 850K .......... .......... .......... .......... .......... 88% 65.9M 0s
09:49:03 900K .......... .......... .......... .......... .......... 93% 4.31M 0s
09:49:03 950K .......... .......... .......... .......... .......... 98% 220M 0s
09:49:03 1000K .......... .. 100% 268M=0.07s
09:49:03
09:49:03 2026-02-05 09:49:03 (13.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
09:49:03
09:49:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
09:49:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:03 --2026-02-05 09:49:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
09:49:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:49:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:04 HTTP request sent, awaiting response... 200 OK
09:49:04 Length: 13758 (13K) [application/java-archive]
09:49:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
09:49:04
09:49:04 0K .......... ... 100% 29.4M=0s
09:49:04
09:49:04 2026-02-05 09:49:04 (29.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
09:49:04
09:49:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
09:49:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:04 --2026-02-05 09:49:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
09:49:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:04 HTTP request sent, awaiting response... 200 OK
09:49:04 Length: 962220 (940K) [application/java-archive]
09:49:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
09:49:04
09:49:04 0K .......... .......... .......... .......... .......... 5% 3.51M 0s
09:49:04 50K .......... .......... .......... .......... .......... 10% 8.40M 0s
09:49:04 100K .......... .......... .......... .......... .......... 15% 4.94M 0s
09:49:04 150K .......... .......... .......... .......... .......... 21% 9.24M 0s
09:49:04 200K .......... .......... .......... .......... .......... 26% 13.4M 0s
09:49:04 250K .......... .......... .......... .......... .......... 31% 10.4M 0s
09:49:04 300K .......... .......... .......... .......... .......... 37% 16.4M 0s
09:49:04 350K .......... .......... .......... .......... .......... 42% 19.6M 0s
09:49:04 400K .......... .......... .......... .......... .......... 47% 17.8M 0s
09:49:04 450K .......... .......... .......... .......... .......... 53% 25.8M 0s
09:49:04 500K .......... .......... .......... .......... .......... 58% 16.9M 0s
09:49:04 550K .......... .......... .......... .......... .......... 63% 12.8M 0s
09:49:04 600K .......... .......... .......... .......... .......... 69% 28.1M 0s
09:49:04 650K .......... .......... .......... .......... .......... 74% 14.1M 0s
09:49:04 700K .......... .......... .......... .......... .......... 79% 23.1M 0s
09:49:04 750K .......... .......... .......... .......... .......... 85% 18.0M 0s
09:49:04 800K .......... .......... .......... .......... .......... 90% 12.8M 0s
09:49:04 850K .......... .......... .......... .......... .......... 95% 27.2M 0s
09:49:04 900K .......... .......... .......... ......... 100% 12.0M=0.08s
09:49:04
09:49:04 2026-02-05 09:49:04 (11.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
09:49:04
09:49:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
09:49:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:04 --2026-02-05 09:49:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
09:49:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:04 HTTP request sent, awaiting response... 200 OK
09:49:04 Length: 30963 (30K) [application/java-archive]
09:49:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
09:49:04
09:49:04 0K .......... .......... .......... 100% 11.0M=0.003s
09:49:04
09:49:04 2026-02-05 09:49:04 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
09:49:04
09:49:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
09:49:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:04 --2026-02-05 09:49:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
09:49:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:05 HTTP request sent, awaiting response... 200 OK
09:49:05 Length: 241618 (236K) [application/java-archive]
09:49:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
09:49:05
09:49:05 0K .......... .......... .......... .......... .......... 21% 3.51M 0s
09:49:05 50K .......... .......... .......... .......... .......... 42% 8.51M 0s
09:49:05 100K .......... .......... .......... .......... .......... 63% 4.62M 0s
09:49:05 150K .......... .......... .......... .......... .......... 84% 10.4M 0s
09:49:05 200K .......... .......... .......... ..... 100% 12.4M=0.04s
09:49:05
09:49:05 2026-02-05 09:49:05 (6.10 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
09:49:05
09:49:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
09:49:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:05 --2026-02-05 09:49:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
09:49:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:05 HTTP request sent, awaiting response... 200 OK
09:49:05 Length: 77013 (75K) [application/java-archive]
09:49:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’
09:49:05
09:49:05 0K .......... .......... .......... .......... .......... 66% 32.2M 0s
09:49:05 50K .......... .......... ..... 100% 2.02M=0.01s
09:49:05
09:49:05 2026-02-05 09:49:05 (5.37 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’ saved [77013/77013]
09:49:05
09:49:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
09:49:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:05 --2026-02-05 09:49:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
09:49:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:05 HTTP request sent, awaiting response... 200 OK
09:49:05 Length: 292688 (286K) [application/java-archive]
09:49:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’
09:49:05
09:49:05 0K .......... .......... .......... .......... .......... 17% 34.8M 0s
09:49:05 50K .......... .......... .......... .......... .......... 34% 3.57M 0s
09:49:05 100K .......... .......... .......... .......... .......... 52% 108M 0s
09:49:05 150K .......... .......... .......... .......... .......... 69% 3.74M 0s
09:49:05 200K .......... .......... .......... .......... .......... 87% 147M 0s
09:49:05 250K .......... .......... .......... ..... 100% 208M=0.03s
09:49:05
09:49:05 2026-02-05 09:49:05 (9.60 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’ saved [292688/292688]
09:49:05
09:49:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
09:49:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:05 --2026-02-05 09:49:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
09:49:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:05 HTTP request sent, awaiting response... 200 OK
09:49:05 Length: 91685 (90K) [application/java-archive]
09:49:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
09:49:05
09:49:05 0K .......... .......... .......... .......... .......... 55% 35.9M 0s
09:49:05 50K .......... .......... .......... ......... 100% 2.84M=0.01s
09:49:05
09:49:05 2026-02-05 09:49:05 (5.85 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
09:49:05
09:49:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
09:49:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:05 --2026-02-05 09:49:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
09:49:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:06 HTTP request sent, awaiting response... 200 OK
09:49:06 Length: 66309 (65K) [application/java-archive]
09:49:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
09:49:06
09:49:06 0K .......... .......... .......... .......... .......... 77% 3.41M 0s
09:49:06 50K .......... .... 100% 8.57M=0.02s
09:49:06
09:49:06 2026-02-05 09:49:06 (3.95 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
09:49:06
09:49:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
09:49:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:06 --2026-02-05 09:49:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
09:49:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:06 HTTP request sent, awaiting response... 200 OK
09:49:06 Length: 593063 (579K) [application/java-archive]
09:49:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
09:49:06
09:49:06 0K .......... .......... .......... .......... .......... 8% 34.8M 0s
09:49:06 50K .......... .......... .......... .......... .......... 17% 3.60M 0s
09:49:06 100K .......... .......... .......... .......... .......... 25% 76.1M 0s
09:49:06 150K .......... .......... .......... .......... .......... 34% 3.74M 0s
09:49:06 200K .......... .......... .......... .......... .......... 43% 171M 0s
09:49:06 250K .......... .......... .......... .......... .......... 51% 61.9M 0s
09:49:06 300K .......... .......... .......... .......... .......... 60% 165M 0s
09:49:06 350K .......... .......... .......... .......... .......... 69% 58.8M 0s
09:49:06 400K .......... .......... .......... .......... .......... 77% 4.14M 0s
09:49:06 450K .......... .......... .......... .......... .......... 86% 95.1M 0s
09:49:06 500K .......... .......... .......... .......... .......... 94% 81.8M 0s
09:49:06 550K .......... .......... ......... 100% 333M=0.04s
09:49:06
09:49:06 2026-02-05 09:49:06 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
09:49:06
09:49:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
09:49:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:06 --2026-02-05 09:49:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
09:49:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:49:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:06 HTTP request sent, awaiting response... 200 OK
09:49:06 Length: 1688471 (1.6M) [application/java-archive]
09:49:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
09:49:06
09:49:06 0K .......... .......... .......... .......... .......... 3% 33.4M 0s
09:49:06 50K .......... .......... .......... .......... .......... 6% 3.29M 0s
09:49:06 100K .......... .......... .......... .......... .......... 9% 115M 0s
09:49:06 150K .......... .......... .......... .......... .......... 12% 3.37M 0s
09:49:06 200K .......... .......... .......... .......... .......... 15% 65.8M 0s
09:49:06 250K .......... .......... .......... .......... .......... 18% 66.1M 0s
09:49:06 300K .......... .......... .......... .......... .......... 21% 59.0M 0s
09:49:06 350K .......... .......... .......... .......... .......... 24% 236M 0s
09:49:06 400K .......... .......... .......... .......... .......... 27% 4.36M 0s
09:49:06 450K .......... .......... .......... .......... .......... 30% 61.0M 0s
09:49:06 500K .......... .......... .......... .......... .......... 33% 72.9M 0s
09:49:06 550K .......... .......... .......... .......... .......... 36% 256M 0s
09:49:06 600K .......... .......... .......... .......... .......... 39% 57.4M 0s
09:49:06 650K .......... .......... .......... .......... .......... 42% 4.32M 0s
09:49:06 700K .......... .......... .......... .......... .......... 45% 72.1M 0s
09:49:06 750K .......... .......... .......... .......... .......... 48% 35.0M 0s
09:49:06 800K .......... .......... .......... .......... .......... 51% 245M 0s
09:49:06 850K .......... .......... .......... .......... .......... 54% 115M 0s
09:49:06 900K .......... .......... .......... .......... .......... 57% 4.39M 0s
09:49:06 950K .......... .......... .......... .......... .......... 60% 63.2M 0s
09:49:06 1000K .......... .......... .......... .......... .......... 63% 277M 0s
09:49:06 1050K .......... .......... .......... .......... .......... 66% 36.2M 0s
09:49:06 1100K .......... .......... .......... .......... .......... 69% 121M 0s
09:49:06 1150K .......... .......... .......... .......... .......... 72% 4.42M 0s
09:49:06 1200K .......... .......... .......... .......... .......... 75% 59.0M 0s
09:49:06 1250K .......... .......... .......... .......... .......... 78% 248M 0s
09:49:06 1300K .......... .......... .......... .......... .......... 81% 37.2M 0s
09:49:06 1350K .......... .......... .......... .......... .......... 84% 144M 0s
09:49:06 1400K .......... .......... .......... .......... .......... 87% 4.42M 0s
09:49:06 1450K .......... .......... .......... .......... .......... 90% 21.7M 0s
09:49:06 1500K .......... .......... .......... .......... .......... 94% 17.1M 0s
09:49:06 1550K .......... .......... .......... .......... .......... 97% 16.8M 0s
09:49:06 1600K .......... .......... .......... .......... ........ 100% 24.8M=0.1s
09:49:06
09:49:06 2026-02-05 09:49:06 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
09:49:06
09:49:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
09:49:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:06 --2026-02-05 09:49:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
09:49:07 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:07 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:07 HTTP request sent, awaiting response... 200 OK
09:49:07 Length: 36400 (36K) [application/java-archive]
09:49:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
09:49:07
09:49:07 0K .......... .......... .......... ..... 100% 12.6M=0.003s
09:49:07
09:49:07 2026-02-05 09:49:07 (12.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
09:49:07
09:49:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
09:49:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:07 --2026-02-05 09:49:07-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
09:49:07 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:07 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:07 HTTP request sent, awaiting response... 200 OK
09:49:07 Length: 79195 (77K) [application/java-archive]
09:49:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
09:49:07
09:49:07 0K .......... .......... .......... .......... .......... 64% 3.50M 0s
09:49:07 50K .......... .......... ....... 100% 9.16M=0.02s
09:49:07
09:49:07 2026-02-05 09:49:07 (4.47 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
09:49:07
09:49:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
09:49:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:07 --2026-02-05 09:49:07-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
09:49:07 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:07 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:49:07 HTTP request sent, awaiting response... 200 OK
09:49:07 Length: 277829 (271K) [application/java-archive]
09:49:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
09:49:07
09:49:07 0K .......... .......... .......... .......... .......... 18% 32.7M 0s
09:49:07 50K .......... .......... .......... .......... .......... 36% 3.60M 0s
09:49:07 100K .......... .......... .......... .......... .......... 55% 24.7M 0s
09:49:07 150K .......... .......... .......... .......... .......... 73% 4.29M 0s
09:49:07 200K .......... .......... .......... .......... .......... 92% 22.8M 0s
09:49:07 250K .......... .......... . 100% 270M=0.03s
09:49:07
09:49:07 2026-02-05 09:49:07 (8.65 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
09:49:07
09:49:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
09:49:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:07 --2026-02-05 09:49:07-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
09:49:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:49:08 HTTP request sent, awaiting response... 200 OK
09:49:08 Length: 579673 (566K) [application/java-archive]
09:49:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
09:49:08
09:49:08 0K .......... .......... .......... .......... .......... 8% 3.51M 0s
09:49:08 50K .......... .......... .......... .......... .......... 17% 7.62M 0s
09:49:08 100K .......... .......... .......... .......... .......... 26% 5.01M 0s
09:49:08 150K .......... .......... .......... .......... .......... 35% 10.4M 0s
09:49:08 200K .......... .......... .......... .......... .......... 44% 12.9M 0s
09:49:08 250K .......... .......... .......... .......... .......... 52% 11.4M 0s
09:49:08 300K .......... .......... .......... .......... .......... 61% 19.7M 0s
09:49:08 350K .......... .......... .......... .......... .......... 70% 15.5M 0s
09:49:08 400K .......... .......... .......... .......... .......... 79% 24.9M 0s
09:49:08 450K .......... .......... .......... .......... .......... 88% 24.0M 0s
09:49:08 500K .......... .......... .......... .......... .......... 97% 10.7M 0s
09:49:08 550K .......... ...... 100% 21.5M=0.06s
09:49:08
09:49:08 2026-02-05 09:49:08 (9.57 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
09:49:08
09:49:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
09:49:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:08 --2026-02-05 09:49:08-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
09:49:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:49:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:49:08 HTTP request sent, awaiting response... 200 OK
09:49:08 Length: 175836 (172K) [application/java-archive]
09:49:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
09:49:08
09:49:08 0K .......... .......... .......... .......... .......... 29% 35.1M 0s
09:49:08 50K .......... .......... .......... .......... .......... 58% 3.55M 0s
09:49:08 100K .......... .......... .......... .......... .......... 87% 3.88M 0s
09:49:08 150K .......... .......... . 100% 27.6M=0.03s
09:49:08
09:49:08 2026-02-05 09:49:08 (5.89 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
09:49:08
09:49:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
09:49:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:08 --2026-02-05 09:49:08-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
09:49:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:49:08 HTTP request sent, awaiting response... 200 OK
09:49:08 Length: 889211 (868K) [application/java-archive]
09:49:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
09:49:08
09:49:08 0K .......... .......... .......... .......... .......... 5% 27.5M 0s
09:49:08 50K .......... .......... .......... .......... .......... 11% 3.54M 0s
09:49:08 100K .......... .......... .......... .......... .......... 17% 77.6M 0s
09:49:08 150K .......... .......... .......... .......... .......... 23% 3.78M 0s
09:49:08 200K .......... .......... .......... .......... .......... 28% 73.5M 0s
09:49:08 250K .......... .......... .......... .......... .......... 34% 60.2M 0s
09:49:08 300K .......... .......... .......... .......... .......... 40% 328M 0s
09:49:08 350K .......... .......... .......... .......... .......... 46% 4.80M 0s
09:49:08 400K .......... .......... .......... .......... .......... 51% 25.0M 0s
09:49:08 450K .......... .......... .......... .......... .......... 57% 38.6M 0s
09:49:08 500K .......... .......... .......... .......... .......... 63% 316M 0s
09:49:08 550K .......... .......... .......... .......... .......... 69% 58.1M 0s
09:49:08 600K .......... .......... .......... .......... .......... 74% 118M 0s
09:49:08 650K .......... .......... .......... .......... .......... 80% 4.39M 0s
09:49:08 700K .......... .......... .......... .......... .......... 86% 41.4M 0s
09:49:08 750K .......... .......... .......... .......... .......... 92% 256M 0s
09:49:08 800K .......... .......... .......... .......... .......... 97% 56.2M 0s
09:49:08 850K .......... ........ 100% 265M=0.06s
09:49:08
09:49:08 2026-02-05 09:49:08 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
09:49:08
09:49:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
09:49:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:08 --2026-02-05 09:49:08-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
09:49:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:49:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
09:49:09 HTTP request sent, awaiting response... 200 OK
09:49:09 Length: 736051 (719K) [application/java-archive]
09:49:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
09:49:09
09:49:09 0K .......... .......... .......... .......... .......... 6% 16.1M 0s
09:49:09 50K .......... .......... .......... .......... .......... 13% 3.02M 0s
09:49:09 100K .......... .......... .......... .......... .......... 20% 4.38M 0s
09:49:09 150K .......... .......... .......... .......... .......... 27% 113M 0s
09:49:09 200K .......... .......... .......... .......... .......... 34% 16.4M 0s
09:49:09 250K .......... .......... .......... .......... .......... 41% 279M 0s
09:49:09 300K .......... .......... .......... .......... .......... 48% 4.94M 0s
09:49:09 350K .......... .......... .......... .......... .......... 55% 62.1M 0s
09:49:09 400K .......... .......... .......... .......... .......... 62% 334M 0s
09:49:09 450K .......... .......... .......... .......... .......... 69% 29.9M 0s
09:49:09 500K .......... .......... .......... .......... .......... 76% 37.0M 0s
09:49:09 550K .......... .......... .......... .......... .......... 83% 4.97M 0s
09:49:09 600K .......... .......... .......... .......... .......... 90% 56.8M 0s
09:49:09 650K .......... .......... .......... .......... .......... 97% 267M 0s
09:49:09 700K .......... ........ 100% 12.9M=0.06s
09:49:09
09:49:09 2026-02-05 09:49:09 (11.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
09:49:09
09:49:09 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
09:49:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:09 --2026-02-05 09:49:09-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
09:49:09 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:09 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:09 HTTP request sent, awaiting response... 200 OK
09:49:09 Length: 331034 (323K) [application/java-archive]
09:49:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
09:49:09
09:49:09 0K .......... .......... .......... .......... .......... 15% 34.6M 0s
09:49:09 50K .......... .......... .......... .......... .......... 30% 3.62M 0s
09:49:09 100K .......... .......... .......... .......... .......... 46% 146M 0s
09:49:09 150K .......... .......... .......... .......... .......... 61% 3.71M 0s
09:49:09 200K .......... .......... .......... .......... .......... 77% 167M 0s
09:49:09 250K .......... .......... .......... .......... .......... 92% 58.7M 0s
09:49:09 300K .......... .......... ... 100% 514M=0.03s
09:49:09
09:49:09 2026-02-05 09:49:09 (10.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
09:49:09
09:49:09 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
09:49:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:09 --2026-02-05 09:49:09-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
09:49:09 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:49:09 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:49:09 HTTP request sent, awaiting response... 200 OK
09:49:09 Length: 6749842 (6.4M) [application/java-archive]
09:49:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
09:49:09
09:49:09 0K .......... .......... .......... .......... .......... 0% 33.1M 0s
09:49:09 50K .......... .......... .......... .......... .......... 1% 3.57M 1s
09:49:09 100K .......... .......... .......... .......... .......... 2% 61.5M 1s
09:49:09 150K .......... .......... .......... .......... .......... 3% 3.84M 1s
09:49:09 200K .......... .......... .......... .......... .......... 3% 132M 1s
09:49:09 250K .......... .......... .......... .......... .......... 4% 106M 1s
09:49:09 300K .......... .......... .......... .......... .......... 5% 56.2M 1s
09:49:09 350K .......... .......... .......... .......... .......... 6% 67.9M 0s
09:49:09 400K .......... .......... .......... .......... .......... 6% 4.01M 1s
09:49:09 450K .......... .......... .......... .......... .......... 7% 75.5M 1s
09:49:09 500K .......... .......... .......... .......... .......... 8% 111M 0s
09:49:09 550K .......... .......... .......... .......... .......... 9% 59.8M 0s
09:49:09 600K .......... .......... .......... .......... .......... 9% 62.8M 0s
09:49:09 650K .......... .......... .......... .......... .......... 10% 4.47M 0s
09:49:09 700K .......... .......... .......... .......... .......... 11% 90.2M 0s
09:49:09 750K .......... .......... .......... .......... .......... 12% 80.4M 0s
09:49:09 800K .......... .......... .......... .......... .......... 12% 58.7M 0s
09:49:09 850K .......... .......... .......... .......... .......... 13% 58.5M 0s
09:49:09 900K .......... .......... .......... .......... .......... 14% 4.41M 0s
09:49:09 950K .......... .......... .......... .......... .......... 15% 59.5M 0s
09:49:09 1000K .......... .......... .......... .......... .......... 15% 119M 0s
09:49:09 1050K .......... .......... .......... .......... .......... 16% 82.3M 0s
09:49:09 1100K .......... .......... .......... .......... .......... 17% 64.2M 0s
09:49:09 1150K .......... .......... .......... .......... .......... 18% 4.38M 0s
09:49:09 1200K .......... .......... .......... .......... .......... 18% 58.0M 0s
09:49:09 1250K .......... .......... .......... .......... .......... 19% 62.2M 0s
09:49:09 1300K .......... .......... .......... .......... .......... 20% 231M 0s
09:49:09 1350K .......... .......... .......... .......... .......... 21% 63.2M 0s
09:49:09 1400K .......... .......... .......... .......... .......... 21% 4.32M 0s
09:49:09 1450K .......... .......... .......... .......... .......... 22% 17.0M 0s
09:49:09 1500K .......... .......... .......... .......... .......... 23% 26.5M 0s
09:49:09 1550K .......... .......... .......... .......... .......... 24% 16.7M 0s
09:49:09 1600K .......... .......... .......... .......... .......... 25% 17.9M 0s
09:49:09 1650K .......... .......... .......... .......... .......... 25% 16.8M 0s
09:49:09 1700K .......... .......... .......... .......... .......... 26% 21.4M 0s
09:49:09 1750K .......... .......... .......... .......... .......... 27% 12.8M 0s
09:49:09 1800K .......... .......... .......... .......... .......... 28% 26.4M 0s
09:49:09 1850K .......... .......... .......... .......... .......... 28% 17.7M 0s
09:49:09 1900K .......... .......... .......... .......... .......... 29% 14.7M 0s
09:49:09 1950K .......... .......... .......... .......... .......... 30% 22.0M 0s
09:49:09 2000K .......... .......... .......... .......... .......... 31% 17.3M 0s
09:49:09 2050K .......... .......... .......... .......... .......... 31% 26.1M 0s
09:49:09 2100K .......... .......... .......... .......... .......... 32% 14.7M 0s
09:49:09 2150K .......... .......... .......... .......... .......... 33% 14.5M 0s
09:49:09 2200K .......... .......... .......... .......... .......... 34% 22.0M 0s
09:49:09 2250K .......... .......... .......... .......... .......... 34% 17.2M 0s
09:49:09 2300K .......... .......... .......... .......... .......... 35% 25.3M 0s
09:49:09 2350K .......... .......... .......... .......... .......... 36% 14.8M 0s
09:49:09 2400K .......... .......... .......... .......... .......... 37% 14.7M 0s
09:49:09 2450K .......... .......... .......... .......... .......... 37% 21.3M 0s
09:49:09 2500K .......... .......... .......... .......... .......... 38% 23.0M 0s
09:49:09 2550K .......... .......... .......... .......... .......... 39% 16.6M 0s
09:49:09 2600K .......... .......... .......... .......... .......... 40% 13.7M 0s
09:49:09 2650K .......... .......... .......... .......... .......... 40% 17.8M 0s
09:49:09 2700K .......... .......... .......... .......... .......... 41% 22.0M 0s
09:49:09 2750K .......... .......... .......... .......... .......... 42% 16.5M 0s
09:49:09 2800K .......... .......... .......... .......... .......... 43% 22.9M 0s
09:49:09 2850K .......... .......... .......... .......... .......... 43% 15.3M 0s
09:49:09 2900K .......... .......... .......... .......... .......... 44% 26.1M 0s
09:49:09 2950K .......... .......... .......... .......... .......... 45% 14.1M 0s
09:49:09 3000K .......... .......... .......... .......... .......... 46% 23.6M 0s
09:49:09 3050K .......... .......... .......... .......... .......... 47% 16.5M 0s
09:49:09 3100K .......... .......... .......... .......... .......... 47% 11.8M 0s
09:49:09 3150K .......... .......... .......... .......... .......... 48% 18.6M 0s
09:49:09 3200K .......... .......... .......... .......... .......... 49% 36.8M 0s
09:49:09 3250K .......... .......... .......... .......... .......... 50% 19.2M 0s
09:49:09 3300K .......... .......... .......... .......... .......... 50% 16.0M 0s
09:49:09 3350K .......... .......... .......... .......... .......... 51% 11.8M 0s
09:49:09 3400K .......... .......... .......... .......... .......... 52% 20.0M 0s
09:49:09 3450K .......... .......... .......... .......... .......... 53% 27.0M 0s
09:49:09 3500K .......... .......... .......... .......... .......... 53% 21.9M 0s
09:49:09 3550K .......... .......... .......... .......... .......... 54% 18.8M 0s
09:49:09 3600K .......... .......... .......... .......... .......... 55% 10.9M 0s
09:49:09 3650K .......... .......... .......... .......... .......... 56% 34.8M 0s
09:49:09 3700K .......... .......... .......... .......... .......... 56% 16.8M 0s
09:49:09 3750K .......... .......... .......... .......... .......... 57% 21.2M 0s
09:49:09 3800K .......... .......... .......... .......... .......... 58% 18.4M 0s
09:49:09 3850K .......... .......... .......... .......... .......... 59% 13.9M 0s
09:49:09 3900K .......... .......... .......... .......... .......... 59% 26.0M 0s
09:49:09 3950K .......... .......... .......... .......... .......... 60% 21.8M 0s
09:49:09 4000K .......... .......... .......... .......... .......... 61% 14.0M 0s
09:49:09 4050K .......... .......... .......... .......... .......... 62% 19.1M 0s
09:49:09 4100K .......... .......... .......... .......... .......... 62% 14.7M 0s
09:49:09 4150K .......... .......... .......... .......... .......... 63% 25.4M 0s
09:49:09 4200K .......... .......... .......... .......... .......... 64% 14.2M 0s
09:49:09 4250K .......... .......... .......... .......... .......... 65% 28.5M 0s
09:49:09 4300K .......... .......... .......... .......... .......... 65% 15.4M 0s
09:49:09 4350K .......... .......... .......... .......... .......... 66% 32.0M 0s
09:49:09 4400K .......... .......... .......... .......... .......... 67% 13.2M 0s
09:49:09 4450K .......... .......... .......... .......... .......... 68% 18.1M 0s
09:49:09 4500K .......... .......... .......... .......... .......... 69% 20.0M 0s
09:49:09 4550K .......... .......... .......... .......... .......... 69% 14.7M 0s
09:49:09 4600K .......... .......... .......... .......... .......... 70% 35.3M 0s
09:49:09 4650K .......... .......... .......... .......... .......... 71% 13.0M 0s
09:49:09 4700K .......... .......... .......... .......... .......... 72% 14.1M 0s
09:49:10 4750K .......... .......... .......... .......... .......... 72% 29.7M 0s
09:49:10 4800K .......... .......... .......... .......... .......... 73% 25.7M 0s
09:49:10 4850K .......... .......... .......... .......... .......... 74% 23.9M 0s
09:49:10 4900K .......... .......... .......... .......... .......... 75% 10.0M 0s
09:49:10 4950K .......... .......... .......... .......... .......... 75% 15.2M 0s
09:49:10 5000K .......... .......... .......... .......... .......... 76% 30.6M 0s
09:49:10 5050K .......... .......... .......... .......... .......... 77% 24.4M 0s
09:49:10 5100K .......... .......... .......... .......... .......... 78% 23.7M 0s
09:49:10 5150K .......... .......... .......... .......... .......... 78% 8.56M 0s
09:49:10 5200K .......... .......... .......... .......... .......... 79% 32.5M 0s
09:49:10 5250K .......... .......... .......... .......... .......... 80% 21.3M 0s
09:49:10 5300K .......... .......... .......... .......... .......... 81% 24.1M 0s
09:49:10 5350K .......... .......... .......... .......... .......... 81% 24.3M 0s
09:49:10 5400K .......... .......... .......... .......... .......... 82% 9.79M 0s
09:49:10 5450K .......... .......... .......... .......... .......... 83% 28.3M 0s
09:49:10 5500K .......... .......... .......... .......... .......... 84% 18.5M 0s
09:49:10 5550K .......... .......... .......... .......... .......... 84% 18.8M 0s
09:49:10 5600K .......... .......... .......... .......... .......... 85% 25.4M 0s
09:49:10 5650K .......... .......... .......... .......... .......... 86% 10.4M 0s
09:49:10 5700K .......... .......... .......... .......... .......... 87% 22.6M 0s
09:49:10 5750K .......... .......... .......... .......... .......... 87% 18.5M 0s
09:49:10 5800K .......... .......... .......... .......... .......... 88% 22.7M 0s
09:49:10 5850K .......... .......... .......... .......... .......... 89% 33.4M 0s
09:49:10 5900K .......... .......... .......... .......... .......... 90% 9.41M 0s
09:49:10 5950K .......... .......... .......... .......... .......... 91% 14.6M 0s
09:49:10 6000K .......... .......... .......... .......... .......... 91% 30.3M 0s
09:49:10 6050K .......... .......... .......... .......... .......... 92% 24.4M 0s
09:49:10 6100K .......... .......... .......... .......... .......... 93% 24.5M 0s
09:49:10 6150K .......... .......... .......... .......... .......... 94% 10.1M 0s
09:49:10 6200K .......... .......... .......... .......... .......... 94% 31.4M 0s
09:49:10 6250K .......... .......... .......... .......... .......... 95% 17.6M 0s
09:49:10 6300K .......... .......... .......... .......... .......... 96% 31.1M 0s
09:49:10 6350K .......... .......... .......... .......... .......... 97% 16.7M 0s
09:49:10 6400K .......... .......... .......... .......... .......... 97% 9.08M 0s
09:49:10 6450K .......... .......... .......... .......... .......... 98% 19.1M 0s
09:49:10 6500K .......... .......... .......... .......... .......... 99% 36.4M 0s
09:49:10 6550K .......... .......... .......... .......... . 100% 19.4M=0.4s
09:49:10
09:49:10 2026-02-05 09:49:10 (17.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
09:49:10
09:49:10 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
09:49:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:49:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:49:10 --2026-02-05 09:49:10-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
09:49:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:49:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:49:10 HTTP request sent, awaiting response... 200 OK
09:49:10 Length: 1732435 (1.7M) [application/java-archive]
09:49:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
09:49:10
09:49:10 0K .......... .......... .......... .......... .......... 2% 35.8M 0s
09:49:10 50K .......... .......... .......... .......... .......... 5% 3.52M 0s
09:49:10 100K .......... .......... .......... .......... .......... 8% 3.84M 0s
09:49:10 150K .......... .......... .......... .......... .......... 11% 40.1M 0s
09:49:10 200K .......... .......... .......... .......... .......... 14% 284M 0s
09:49:10 250K .......... .......... .......... .......... .......... 17% 155M 0s
09:49:10 300K .......... .......... .......... .......... .......... 20% 57.0M 0s
09:49:10 350K .......... .......... .......... .......... .......... 23% 3.98M 0s
09:49:10 400K .......... .......... .......... .......... .......... 26% 104M 0s
09:49:10 450K .......... .......... .......... .......... .......... 29% 291M 0s
09:49:10 500K .......... .......... .......... .......... .......... 32% 50.9M 0s
09:49:10 550K .......... .......... .......... .......... .......... 35% 103M 0s
09:49:10 600K .......... .......... .......... .......... .......... 38% 4.82M 0s
09:49:10 650K .......... .......... .......... .......... .......... 41% 19.0M 0s
09:49:10 700K .......... .......... .......... .......... .......... 44% 175M 0s
09:49:10 750K .......... .......... .......... .......... .......... 47% 57.2M 0s
09:49:10 800K .......... .......... .......... .......... .......... 50% 81.9M 0s
09:49:10 850K .......... .......... .......... .......... .......... 53% 5.14M 0s
09:49:10 900K .......... .......... .......... .......... .......... 56% 19.1M 0s
09:49:10 950K .......... .......... .......... .......... .......... 59% 99.4M 0s
09:49:10 1000K .......... .......... .......... .......... .......... 62% 73.3M 0s
09:49:10 1050K .......... .......... .......... .......... .......... 65% 59.5M 0s
09:49:10 1100K .......... .......... .......... .......... .......... 67% 5.42M 0s
09:49:10 1150K .......... .......... .......... .......... .......... 70% 14.9M 0s
09:49:10 1200K .......... .......... .......... .......... .......... 73% 160M 0s
09:49:10 1250K .......... .......... .......... .......... .......... 76% 55.0M 0s
09:49:10 1300K .......... .......... .......... .......... .......... 79% 109M 0s
09:49:10 1350K .......... .......... .......... .......... .......... 82% 64.9M 0s
09:49:10 1400K .......... .......... .......... .......... .......... 85% 4.29M 0s
09:49:10 1450K .......... .......... .......... .......... .......... 88% 17.0M 0s
09:49:10 1500K .......... .......... .......... .......... .......... 91% 17.5M 0s
09:49:10 1550K .......... .......... .......... .......... .......... 94% 17.4M 0s
09:49:10 1600K .......... .......... .......... .......... .......... 97% 26.0M 0s
09:49:10 1650K .......... .......... .......... .......... . 100% 20.2M=0.1s
09:49:10
09:49:10 2026-02-05 09:49:10 (14.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
09:49:10
09:49:10 + for x in *.jar
09:49:10 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
09:49:10 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:49:10 ++ deactivate nondestructive
09:49:10 ++ '[' -n '' ']'
09:49:10 ++ '[' -n '' ']'
09:49:10 ++ hash -r
09:49:10 ++ '[' -n '' ']'
09:49:10 ++ unset VIRTUAL_ENV
09:49:10 ++ unset VIRTUAL_ENV_PROMPT
09:49:10 ++ '[' '!' nondestructive = nondestructive ']'
09:49:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:49:10 ++ export VIRTUAL_ENV
09:49:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:49:10 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:49:10 ++ export PATH
09:49:10 ++ '[' -n '' ']'
09:49:10 ++ '[' -z '' ']'
09:49:10 ++ _OLD_VIRTUAL_PS1=
09:49:10 ++ PS1='(.venv3) '
09:49:10 ++ export PS1
09:49:10 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:49:10 ++ export VIRTUAL_ENV_PROMPT
09:49:10 ++ hash -r
09:49:10 + pip install -U pip
09:49:10 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
09:49:10 Collecting pip
09:49:11 Downloading pip-26.0.1-py3-none-any.whl (1.8 MB)
09:49:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 8.2 MB/s eta 0:00:00
09:49:11 Installing collected packages: pip
09:49:11 Attempting uninstall: pip
09:49:11 Found existing installation: pip 22.3.1
09:49:11 Uninstalling pip-22.3.1:
09:49:11 Successfully uninstalled pip-22.3.1
09:49:12 Successfully installed pip-26.0.1
09:49:12 WARNING: There was an error checking the latest version of pip.
09:49:12 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:49:13 Collecting zeroc-ice==3.6.5
09:49:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:49:17 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.3 MB/s 0:00:03
09:49:17 Installing collected packages: zeroc-ice
09:49:18 Successfully installed zeroc-ice-3.6.5
09:49:18 + pip install markdown
09:49:18 Collecting markdown
09:49:18 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
09:49:18 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
09:49:18 Installing collected packages: markdown
09:49:18 Successfully installed markdown-3.10.1
09:49:18 + pip install reportlab
09:49:19 Collecting reportlab
09:49:19 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
09:49:19 Collecting pillow>=9.0.0 (from reportlab)
09:49:19 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
09:49:19 Collecting charset-normalizer (from reportlab)
09:49:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
09:49:19 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
09:49:19 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
09:49:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
09:49:19 Installing collected packages: pillow, charset-normalizer, reportlab
09:49:20
09:49:20 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
09:49:20 + pip install omego
09:49:21 Collecting omego
09:49:21 Using cached omego-0.7.0-py3-none-any.whl
09:49:21 Collecting future (from omego)
09:49:21 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:49:21 Collecting yaclifw>=0.1.1 (from omego)
09:49:21 Using cached yaclifw-0.2.0-py3-none-any.whl
09:49:21 Collecting six (from yaclifw>=0.1.1->omego)
09:49:21 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:49:21 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:49:21 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:49:21 Installing collected packages: six, future, yaclifw, omego
09:49:21
09:49:21 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
09:49:21 + pip install tables
09:49:21 Collecting tables
09:49:21 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
09:49:22 Collecting numpy>=1.20.0 (from tables)
09:49:22 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
09:49:22 Collecting numexpr>=2.6.2 (from tables)
09:49:22 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
09:49:22 Collecting packaging (from tables)
09:49:22 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
09:49:22 Collecting py-cpuinfo (from tables)
09:49:22 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:49:22 Collecting blosc2>=2.3.0 (from tables)
09:49:22 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
09:49:22 Collecting typing-extensions>=4.4.0 (from tables)
09:49:22 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
09:49:22 Collecting ndindex (from blosc2>=2.3.0->tables)
09:49:22 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
09:49:23 Collecting msgpack (from blosc2>=2.3.0->tables)
09:49:23 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
09:49:23 Collecting requests (from blosc2>=2.3.0->tables)
09:49:23 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
09:49:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
09:49:23 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
09:49:23 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
09:49:23 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
09:49:23 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
09:49:23 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
09:49:23 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
09:49:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:49:23 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
09:49:23 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
09:49:23 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:49:23 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
09:49:23 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
09:49:23 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
09:49:23 Using cached packaging-26.0-py3-none-any.whl (74 kB)
09:49:23 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:49:23 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
09:49:23 Using cached idna-3.11-py3-none-any.whl (71 kB)
09:49:23 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
09:49:23 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
09:49:23 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
09:49:26
09:49:26 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
09:49:26 + pip install jinja2
09:49:27 Collecting jinja2
09:49:27 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
09:49:27 Collecting MarkupSafe>=2.0 (from jinja2)
09:49:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
09:49:27 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
09:49:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
09:49:27 Installing collected packages: MarkupSafe, jinja2
09:49:27
09:49:27 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
09:49:27 + pip install omero-py
09:49:27 Collecting omero-py
09:49:27 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
09:49:27 Collecting appdirs (from omero-py)
09:49:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:49:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
09:49:27 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
09:49:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
09:49:27 Collecting PyYAML (from omero-py)
09:49:27 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
09:49:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:49:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
09:49:27 Collecting portalocker (from omero-py)
09:49:27 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
09:49:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
09:49:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
09:49:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
09:49:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
09:49:27 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
09:49:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:49:27 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:49:27 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:49:27 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
09:49:29
09:49:29 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
09:49:29 + pip install pyarrow
09:49:30 Collecting pyarrow
09:49:30 Downloading pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
09:49:30 Downloading pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
09:49:32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.5/47.5 MB 20.0 MB/s 0:00:02
09:49:32 Installing collected packages: pyarrow
09:49:34 Successfully installed pyarrow-23.0.0
09:49:34 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:49:34 Collecting omero-metadata
09:49:34 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-kfzgigvv/omero-metadata_d4bccace637a4f77ade46a53d0672211
09:49:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-kfzgigvv/omero-metadata_d4bccace637a4f77ade46a53d0672211
09:49:36 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 06197f7d741d525173a5527c8ad70c40be88c221
09:49:36 Installing build dependencies: started
09:49:37 Installing build dependencies: finished with status 'done'
09:49:37 Getting requirements to build wheel: started
09:49:37 Getting requirements to build wheel: finished with status 'done'
09:49:37 Preparing metadata (pyproject.toml): started
09:49:38 Preparing metadata (pyproject.toml): finished with status 'done'
09:49:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
09:49:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
09:49:38 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
09:49:38 Collecting pandas (from omero-metadata)
09:49:38 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
09:49:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:49:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:49:38 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
09:49:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
09:49:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:49:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
09:49:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
09:49:38 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
09:49:38 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:49:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:49:38 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
09:49:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
09:49:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
09:49:38 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
09:49:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
09:49:38 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
09:49:38 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:49:38 Building wheels for collected packages: omero-metadata
09:49:38 Building wheel for omero-metadata (pyproject.toml): started
09:49:38 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:49:38 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=0e387082df4a7085df41ea3a6d35128576d570256603c2f89ae5a7bf3305c040
09:49:38 Stored in directory: /tmp/pip-ephem-wheel-cache-eafzxscb/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
09:49:38 Successfully built omero-metadata
09:49:38 Installing collected packages: python-dateutil, pandas, omero-metadata
09:49:42
09:49:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
09:49:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:49:43 Collecting omero-cli-render
09:49:43 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-zmwvnzgu/omero-cli-render_16811e1d474544bbad6c02943a6a20ce
09:49:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-zmwvnzgu/omero-cli-render_16811e1d474544bbad6c02943a6a20ce
09:49:44 Running command git checkout -b merge_ci --track origin/merge_ci
09:49:44 Switched to a new branch 'merge_ci'
09:49:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:49:44 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c76317c64d1a141f5f1df90a166db4f07ebf04d3
09:49:44 Installing build dependencies: started
09:49:45 Installing build dependencies: finished with status 'done'
09:49:45 Getting requirements to build wheel: started
09:49:45 Getting requirements to build wheel: finished with status 'done'
09:49:45 Preparing metadata (pyproject.toml): started
09:49:46 Preparing metadata (pyproject.toml): finished with status 'done'
09:49:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
09:49:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
09:49:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:49:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:49:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
09:49:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
09:49:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:49:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
09:49:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
09:49:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
09:49:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
09:49:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
09:49:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
09:49:46 Building wheels for collected packages: omero-cli-render
09:49:46 Building wheel for omero-cli-render (pyproject.toml): started
09:49:46 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:49:46 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=b532c9dc4f275d8f1e56f3bd739c98004ef643fa714aef300909d90d74accf96
09:49:46 Stored in directory: /tmp/pip-ephem-wheel-cache-36ymdufi/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
09:49:46 Successfully built omero-cli-render
09:49:46 Installing collected packages: omero-cli-render
09:49:46 Successfully installed omero-cli-render-0.8.2.dev0
09:49:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:49:46 Collecting omero-cli-duplicate
09:49:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-qo7vmrve/omero-cli-duplicate_e4534fc53f95443ca9b7fc2cd27c500a
09:49:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-qo7vmrve/omero-cli-duplicate_e4534fc53f95443ca9b7fc2cd27c500a
09:49:47 Running command git checkout -b merge_ci --track origin/merge_ci
09:49:48 Switched to a new branch 'merge_ci'
09:49:48 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:49:48 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit dea899803ecd914412d1186399db374c1be02913
09:49:48 Installing build dependencies: started
09:49:48 Installing build dependencies: finished with status 'done'
09:49:48 Getting requirements to build wheel: started
09:49:49 Getting requirements to build wheel: finished with status 'done'
09:49:49 Preparing metadata (pyproject.toml): started
09:49:49 Preparing metadata (pyproject.toml): finished with status 'done'
09:49:49 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
09:49:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:49:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:49:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
09:49:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
09:49:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
09:49:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:49:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
09:49:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
09:49:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
09:49:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
09:49:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
09:49:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
09:49:49 Building wheels for collected packages: omero-cli-duplicate
09:49:49 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:49:49 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:49:49 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=e4a063cdadf60ebcb8561cec3d89eaedca3b0e491f7ce20fb7481d5648b44f09
09:49:49 Stored in directory: /tmp/pip-ephem-wheel-cache-wbu1s5q0/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
09:49:49 Successfully built omero-cli-duplicate
09:49:49 Installing collected packages: omero-cli-duplicate
09:49:49 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:49:49 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
09:49:50 Collecting omero-cli-zarr
09:49:50 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-j5165_0t/omero-cli-zarr_ae9e88498f1e417cb329652be1dadb71
09:49:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-j5165_0t/omero-cli-zarr_ae9e88498f1e417cb329652be1dadb71
09:49:51 Running command git checkout -b merge_ci --track origin/merge_ci
09:49:55 Switched to a new branch 'merge_ci'
09:49:55 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:49:55 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 99cac0afd54f4df05b599870787713d5e445904e
09:49:55 Installing build dependencies: started
09:49:56 Installing build dependencies: finished with status 'done'
09:49:56 Getting requirements to build wheel: started
09:49:56 Getting requirements to build wheel: finished with status 'done'
09:49:56 Installing backend dependencies: started
09:49:57 Installing backend dependencies: finished with status 'done'
09:49:57 Preparing metadata (pyproject.toml): started
09:49:57 Preparing metadata (pyproject.toml): finished with status 'done'
09:49:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
09:49:57 Collecting ome-zarr<0.12.0,>=0.5.0 (from omero-cli-zarr)
09:49:57 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
09:49:57 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.4.2)
09:49:57 Collecting dask (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:57 Using cached dask-2026.1.2-py3-none-any.whl.metadata (3.8 kB)
09:49:57 Collecting zarr<3,>=2.8.1 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:57 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
09:49:57 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:57 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
09:49:58 Collecting aiohttp<4 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
09:49:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.32.5)
09:49:58 Collecting scikit-image (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
09:49:58 Collecting toolz (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
09:49:58 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
09:49:58 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
09:49:58 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
09:49:58 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
09:49:58 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:58 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
09:49:59 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:59 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
09:49:59 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:49:59 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
09:49:59 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.11)
09:50:00 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached asciitree-0.3.3-py3-none-any.whl
09:50:00 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached fasteners-0.20-py3-none-any.whl.metadata (4.8 kB)
09:50:00 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
09:50:00 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
09:50:00 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (4.15.0)
09:50:00 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB)
09:50:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
09:50:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
09:50:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
09:50:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
09:50:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
09:50:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
09:50:00 Collecting click>=8.1 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
09:50:00 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
09:50:00 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (26.0)
09:50:00 Collecting partd>=1.4.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
09:50:00 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
09:50:00 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
09:50:00 Collecting locket (from partd>=1.4.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
09:50:00 Collecting wrapt<3,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
09:50:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.4.4)
09:50:00 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.6.3)
09:50:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2026.1.4)
09:50:00 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
09:50:00 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:00 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
09:50:01 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
09:50:01 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.9.0.post0)
09:50:01 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
09:50:01 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (1.17.0)
09:50:01 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
09:50:01 Collecting networkx>=3.0 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
09:50:01 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
09:50:01 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
09:50:01 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:50:01 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
09:50:01 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
09:50:01 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
09:50:01 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
09:50:01 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
09:50:01 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
09:50:01 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
09:50:01 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
09:50:01 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
09:50:01 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
09:50:01 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
09:50:01 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
09:50:01 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
09:50:01 Using cached dask-2026.1.2-py3-none-any.whl (1.5 MB)
09:50:01 Using cached click-8.3.1-py3-none-any.whl (108 kB)
09:50:01 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
09:50:01 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
09:50:01 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
09:50:01 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
09:50:01 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
09:50:01 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
09:50:01 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
09:50:01 Using cached fasteners-0.20-py3-none-any.whl (18 kB)
09:50:01 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
09:50:01 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
09:50:01 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB)
09:50:01 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
09:50:01 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
09:50:01 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
09:50:01 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
09:50:01 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
09:50:01 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
09:50:01 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
09:50:01 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
09:50:01 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
09:50:01 Building wheels for collected packages: omero-cli-zarr
09:50:01 Building wheel for omero-cli-zarr (pyproject.toml): started
09:50:02 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
09:50:02 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev125+g99cac0a-py3-none-any.whl size=42740 sha256=620b24d58230c260179b8ad10f17e3a455b0546186b6e73807fb3ff8b4c75034
09:50:02 Stored in directory: /tmp/pip-ephem-wheel-cache-n76cizoy/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
09:50:02 Successfully built omero-cli-zarr
09:50:02 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
09:50:11
09:50:11 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.2 deprecated-1.3.1 fasteners-0.20 frozenlist-1.8.0 fsspec-2026.1.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.5.5.dev125+g99cac0a partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-2.18.7 zipp-3.23.0
09:50:11 + pip install omero-certificates
09:50:12 Collecting omero-certificates
09:50:12 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
09:50:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
09:50:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:50:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:50:12 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
09:50:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
09:50:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
09:50:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:50:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
09:50:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
09:50:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
09:50:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
09:50:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
09:50:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
09:50:12 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
09:50:12 Installing collected packages: omero-certificates
09:50:12 Successfully installed omero-certificates-0.4.0
09:50:12 + for x in *.tar.gz
09:50:12 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:50:13 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:50:13 Installing build dependencies: started
09:50:13 Installing build dependencies: finished with status 'done'
09:50:13 Getting requirements to build wheel: started
09:50:14 Getting requirements to build wheel: finished with status 'done'
09:50:14 Preparing metadata (pyproject.toml): started
09:50:14 Preparing metadata (pyproject.toml): finished with status 'done'
09:50:14 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
09:50:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:50:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:50:14 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
09:50:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
09:50:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
09:50:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:50:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
09:50:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
09:50:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
09:50:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
09:50:14 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
09:50:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
09:50:14 Building wheels for collected packages: omero-dropbox
09:50:14 Building wheel for omero-dropbox (pyproject.toml): started
09:50:14 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:50:14 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=59927651f7c7e14e4bc794c731b6abc28492d9bddca91397d15648ff42f07d4f
09:50:14 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
09:50:14 Successfully built omero-dropbox
09:50:14 Installing collected packages: omero-dropbox
09:50:14 Successfully installed omero-dropbox-5.7.1.dev0
09:50:14 + for x in *.tar.gz
09:50:14 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
09:50:15 Processing ./omero_marshal-0.9.2.dev0.tar.gz
09:50:15 Installing build dependencies: started
09:50:17 Installing build dependencies: finished with status 'done'
09:50:17 Getting requirements to build wheel: started
09:50:17 Getting requirements to build wheel: finished with status 'done'
09:50:17 Preparing metadata (pyproject.toml): started
09:50:17 Preparing metadata (pyproject.toml): finished with status 'done'
09:50:17 Building wheels for collected packages: omero_marshal
09:50:17 Building wheel for omero_marshal (pyproject.toml): started
09:50:18 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:50:18 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=fbf4a66b8345d62d6a19edc025e65ee96e47d74004e295a7fbbddaee621dd09d
09:50:18 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
09:50:18 Successfully built omero_marshal
09:50:18 Installing collected packages: omero_marshal
09:50:18 Successfully installed omero_marshal-0.9.2.dev0
09:50:18 + for x in *.tar.gz
09:50:18 + pip install -U omero_py-5.22.0.dev0.tar.gz
09:50:18 Processing ./omero_py-5.22.0.dev0.tar.gz
09:50:19 Installing build dependencies: started
09:50:19 Installing build dependencies: finished with status 'done'
09:50:19 Getting requirements to build wheel: started
09:50:20 Getting requirements to build wheel: finished with status 'done'
09:50:20 Preparing metadata (pyproject.toml): started
09:50:20 Preparing metadata (pyproject.toml): finished with status 'done'
09:50:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
09:50:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
09:50:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.2)
09:50:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
09:50:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
09:50:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
09:50:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
09:50:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
09:50:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
09:50:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
09:50:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
09:50:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
09:50:20 Building wheels for collected packages: omero-py
09:50:20 Building wheel for omero-py (pyproject.toml): started
09:50:21 Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:50:21 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786540 sha256=085b93a065f5020194dd2638081e3eef32a3dd857906fc203f63e21b1cbe477a
09:50:21 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
09:50:21 Successfully built omero-py
09:50:21 Installing collected packages: omero-py
09:50:21 Attempting uninstall: omero-py
09:50:21 Found existing installation: omero-py 5.21.3
09:50:21 Uninstalling omero-py-5.21.3:
09:50:22 Successfully uninstalled omero-py-5.21.3
09:50:23 Successfully installed omero-py-5.22.0.dev0
09:50:24 + for x in *.tar.gz
09:50:24 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
09:50:24 Processing ./omero_scripts-5.10.1.dev0.tar.gz
09:50:24 Installing build dependencies: started
09:50:25 Installing build dependencies: finished with status 'done'
09:50:25 Getting requirements to build wheel: started
09:50:25 Getting requirements to build wheel: finished with status 'done'
09:50:25 Preparing metadata (pyproject.toml): started
09:50:25 Preparing metadata (pyproject.toml): finished with status 'done'
09:50:25 Building wheels for collected packages: omero-scripts
09:50:25 Building wheel for omero-scripts (pyproject.toml): started
09:50:25 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:50:25 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=bb9c9c8d146b851cbacef5eeb0be4b67740c53ae53d27b2698ccd3587a7afaf0
09:50:25 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
09:50:25 Successfully built omero-scripts
09:50:25 Installing collected packages: omero-scripts
09:50:26 Successfully installed omero-scripts-5.10.1.dev0
09:50:26 + for x in *.tar.gz
09:50:26 + pip install -U omero_web-5.30.2.dev0.tar.gz
09:50:26 Processing ./omero_web-5.30.2.dev0.tar.gz
09:50:26 Installing build dependencies: started
09:50:27 Installing build dependencies: finished with status 'done'
09:50:27 Getting requirements to build wheel: started
09:50:27 Getting requirements to build wheel: finished with status 'done'
09:50:27 Preparing metadata (pyproject.toml): started
09:50:28 Preparing metadata (pyproject.toml): finished with status 'done'
09:50:28 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
09:50:28 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
09:50:28 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
09:50:28 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
09:50:28 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
09:50:28 Collecting django-pipeline (from omero-web==5.30.2.dev0)
09:50:28 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
09:50:28 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
09:50:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:50:28 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
09:50:28 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
09:50:28 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
09:50:28 Using cached gunicorn-25.0.1-py3-none-any.whl.metadata (4.7 kB)
09:50:28 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
09:50:28 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
09:50:28 Collecting pytz (from omero-web==5.30.2.dev0)
09:50:28 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
09:50:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
09:50:28 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
09:50:28 Collecting importlib-resources (from omero-web==5.30.2.dev0)
09:50:28 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
09:50:28 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
09:50:28 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
09:50:28 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
09:50:28 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
09:50:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
09:50:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
09:50:28 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
09:50:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
09:50:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
09:50:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
09:50:28 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
09:50:28 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
09:50:28 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
09:50:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
09:50:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
09:50:28 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
09:50:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
09:50:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:50:28 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
09:50:28 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
09:50:28 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
09:50:28 Using cached gunicorn-25.0.1-py3-none-any.whl (169 kB)
09:50:28 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
09:50:28 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
09:50:28 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
09:50:28 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
09:50:28 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
09:50:28 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
09:50:28 Building wheels for collected packages: omero-web
09:50:28 Building wheel for omero-web (pyproject.toml): started
09:50:29 Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:50:29 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=4972f44fb7979787ac1f3733b0221facee20b4797d829d581bf443c1f9444b0d
09:50:29 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
09:50:29 Successfully built omero-web
09:50:30 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
09:50:32
09:50:32 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
09:50:32 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:50:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:50:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:50:32 --2026-02-05 09:50:32-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:50:32 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
09:50:32 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
09:50:32 HTTP request sent, awaiting response... 200 OK
09:50:33 Length: 136943 (134K) [text/plain]
09:50:33 Saving to: ‘Figure_To_Pdf.py’
09:50:33
09:50:33 0K .......... .......... .......... .......... .......... 37% 3.87M 0s
09:50:33 50K .......... .......... .......... .......... .......... 74% 14.6M 0s
09:50:33 100K .......... .......... .......... ... 100% 5.65M=0.02s
09:50:33
09:50:33 2026-02-05 09:50:33 (6.00 MB/s) - ‘Figure_To_Pdf.py’ saved [136943/136943]
09:50:33
09:50:33 + chmod 755 Figure_To_Pdf.py
09:50:33 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:50:33 + omero config set omero.db.name OMERO-server
09:50:34 + omero config set omero.db.host pg
09:50:36 + omero config set omero.db.user postgres
09:50:38 + omero config set omero.data.dir /home/omero/omero-server-data
09:50:40 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:50:42 + omero config set omero.db.poolsize 25
09:50:44 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:50:45 + omero config set omero.security.trustStorePassword changeit
09:50:47 + omero config set omero.mail.config true
09:50:49 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:50:51 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:50:53 + omero certificates
09:50:54 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
09:50:54 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:50:54 + '[' false = true ']'
09:50:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:50:54 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:50:54 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:50:55 2026-02-05 09:50:55,159 [ omego.db] DEBUG dbcommand => upgrade
09:50:55 2026-02-05 09:50:55,159 [ omego.db] DEBUG dbhost => localhost
09:50:55 2026-02-05 09:50:55,160 [ omego.db] DEBUG dbname => OMERO-server
09:50:55 2026-02-05 09:50:55,160 [ omego.db] DEBUG dbpass => omero
09:50:55 2026-02-05 09:50:55,160 [ omego.db] DEBUG dbuser => omero
09:50:55 2026-02-05 09:50:55,160 [ omego.db] DEBUG rootpass => omero
09:50:55 2026-02-05 09:50:55,160 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:50:55 2026-02-05 09:50:55,160 [omego.extern] INFO Executing : omero version
09:50:56 OMERO.py version:
09:50:56 OMERO.server version:
09:50:56 5.6.3-588-0f5c5e9159-ice36-b44
09:50:56 5.22.0.dev0
09:50:57 2026-02-05 09:50:57,125 [omego.extern] INFO Completed [1.965 s]
09:50:57 2026-02-05 09:50:57,125 [omego.extern] DEBUG Using omero CLI from omero
09:50:57 2026-02-05 09:50:57,125 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:50:57 2026-02-05 09:50:57,125 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:50:57 2026-02-05 09:50:57,125 [omego.extern] INFO Executing : omero config get --show-password
09:50:58 2026-02-05 09:50:58,952 [omego.extern] INFO Completed [1.827 s]
09:50:58 2026-02-05 09:50:58,952 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:50:58 2026-02-05 09:50:58,952 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:50:58 2026-02-05 09:50:58,958 [omego.extern] INFO Completed [0.005 s]
09:50:58 2026-02-05 09:50:58,958 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
09:50:58 2026-02-05 09:50:58,958 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
09:50:58
09:50:58 2026-02-05 09:50:58,958 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:50:58 2026-02-05 09:50:58,958 [omego.extern] INFO Executing : omero config get --show-password
09:51:00 2026-02-05 09:51:00,745 [omego.extern] INFO Completed [1.787 s]
09:51:00 2026-02-05 09:51:00,745 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:51:00 2026-02-05 09:51:00,745 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:51:00 2026-02-05 09:51:00,754 [omego.extern] INFO Completed [0.009 s]
09:51:00 2026-02-05 09:51:00,754 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
09:51:00 2026-02-05 09:51:00,754 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:51:00 2026-02-05 09:51:00,754 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:51:00 2026-02-05 09:51:00,754 [omego.extern] INFO Executing : omero config get --show-password
09:51:02 2026-02-05 09:51:02,574 [omego.extern] INFO Completed [1.820 s]
09:51:02 2026-02-05 09:51:02,574 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:51:02 2026-02-05 09:51:02,574 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:51:02 2026-02-05 09:51:02,584 [omego.extern] INFO Completed [0.010 s]
09:51:02 2026-02-05 09:51:02,584 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:51:02 2026-02-05 09:51:02,584 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
09:51:02 2026-02-05 09:51:02,585 [ omego.db] INFO Database is already at OMERO5.4__0
09:51:02 + export LANG=en_US.UTF-8
09:51:02 + LANG=en_US.UTF-8
09:51:02 + export LANGUAGE=en_US:en
09:51:02 + LANGUAGE=en_US:en
09:51:02 + export LC_ALL=en_US.UTF-8
09:51:02 + LC_ALL=en_US.UTF-8
09:51:02 + BUILD_ID=DONT_KILL_ME
09:51:02 + omero admin start
09:51:07 No descriptor given. Using etc/grid/default.xml
09:51:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:51:14 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:51:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:51:14 Waiting on startup. Use CTRL-C to exit
09:51:14 + omero admin waitup
09:51:16 Waiting on startup. Use CTRL-C to exit
09:51:16 + omero admin diagnostics
09:51:18
09:51:18 ================================================================================
09:51:18 OMERO Diagnostics (admin)
09:51:18 ================================================================================
09:51:18
09:51:18 Commands: java -version 17.0.17 (/usr/bin/java)
09:51:18 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:51:18 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
09:51:18 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
09:51:18 Commands: psql --version 16.11 (/usr/bin/psql)
09:51:18 Commands: openssl version 3.5.11 (/usr/bin/openssl)
09:51:18
09:51:18 Component: OMERO.py 5.22.0.dev0
09:51:18 Component: OMERO.server 5.6.3-588-0f5c5e9159-ice36-b44
09:51:18
09:51:18 Server: icegridnode running
09:51:18 Server: Blitz-0 active (pid = 63219, enabled)
09:51:18 Server: Indexer-0 activating (enabled)
09:51:18 Server: OMERO.Glacier2 active (pid = 63252, enabled)
09:51:18 Server: OMERO.IceStorm active (pid = 63279, enabled)
09:51:18 Server: Processor-0 activating (enabled)
09:51:18 Server: Tables-0 activating (enabled)
09:51:18
09:51:18 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:51:18 Log files: Blitz-0.log 20.7 KB errors=0 warnings=1
09:51:18 Log files: DropBox.log n/a
09:51:18 Log files: FileServer.log n/a
09:51:18 Log files: Indexer-0.log 114 B
09:51:18 Log files: MonitorServer.log n/a
09:51:18 Log files: Processor-0.log 281 B
09:51:18 Log files: Tables-0.log 281 B
09:51:18 Log files: TestDropBox.log n/a
09:51:18 Log files: master.err empty
09:51:18 Log files: master.out 30.1 KB
09:51:18 Log files: Total size 0.05 MB
09:51:18
09:51:18
09:51:18 Environment:OMERO_HOME=(unset)
09:51:18 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:51:18 Environment:OMERO_NODE=(unset)
09:51:18 Environment:OMERO_MASTER=(unset)
09:51:18 Environment:OMERO_USERDIR=(unset)
09:51:18 Environment:OMERO_TMPDIR=(unset)
09:51:18 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:51:18 Environment:PYTHONPATH=(unset)
09:51:18 Environment:ICE_HOME=/opt/ice-3.6.5
09:51:18 Environment:LD_LIBRARY_PATH=(unset)
09:51:18 Environment:DYLD_LIBRARY_PATH=(unset)
09:51:18
09:51:18 OMERO SSL port:4064
09:51:18 OMERO TCP port:4063
09:51:18 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
09:51:18 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
09:51:18
09:51:18 JVM settings: Blitz-${index} -Xmx7200m
09:51:18 JVM settings: Indexer-${index} -Xmx4800m
09:51:18 JVM settings: PixelData-${index} -Xmx7200m
09:51:18 JVM settings: Repository-${index} -Xmx4800m
09:51:18
09:51:18 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 5 February 2026 5491cdaf3f86749477f366c940e565c12fb06056
09:51:18 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 5 February 2026 5491cdaf3f86749477f366c940e565c12fb06056
09:51:18 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 5 February 2026 5491cdaf3f86749477f366c940e565c12fb06056
09:51:18 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 5 February 2026 617664d5e78dcbd30c6e83b2c65f08c731b639d8
09:51:18 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
09:51:18 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
09:51:18 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 167834baeb583bfd5e332758021a1abdc8d74585
09:51:18 + deactivate
09:51:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:51:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:51:18 + export PATH
09:51:18 + unset _OLD_VIRTUAL_PATH
09:51:18 + '[' -n '' ']'
09:51:18 + hash -r
09:51:18 + '[' -n '' ']'
09:51:18 + unset VIRTUAL_ENV
09:51:18 + unset VIRTUAL_ENV_PROMPT
09:51:18 + '[' '!' '' = nondestructive ']'
09:51:18 + unset -f deactivate
09:51:18 Finished: SUCCESS
