00:46:33 Started by upstream project "Trigger" build number 68
00:46:33 originally caused by:
00:46:33 Started by timer
00:46:33 Running as SYSTEM
00:46:33 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:46:33 [OMERO-server] $ /bin/bash -xe /tmp/jenkins18422543459035584331.sh
00:46:33 + source /home/settings.env
00:46:33 ++ OMERO_DB_HOST=pg
00:46:33 ++ OMERO_DB_USER=postgres
00:46:33 ++ OMERO_DB_PASS=
00:46:33 ++ OMERO_ROOT_PASS=omero
00:46:33 ++ OMERO_DATA_DIR=/OMERO
00:46:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:33 + OMERO_DB_NAME=OMERO-server
00:46:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:46:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:33 ++ deactivate nondestructive
00:46:33 ++ '[' -n '' ']'
00:46:33 ++ '[' -n '' ']'
00:46:33 ++ hash -r
00:46:33 ++ '[' -n '' ']'
00:46:33 ++ unset VIRTUAL_ENV
00:46:33 ++ unset VIRTUAL_ENV_PROMPT
00:46:33 ++ '[' '!' nondestructive = nondestructive ']'
00:46:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:33 ++ export VIRTUAL_ENV
00:46:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:33 ++ export PATH
00:46:33 ++ '[' -n '' ']'
00:46:33 ++ '[' -z '' ']'
00:46:33 ++ _OLD_VIRTUAL_PS1=
00:46:33 ++ PS1='(.venv3) '
00:46:33 ++ export PS1
00:46:33 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:33 ++ export VIRTUAL_ENV_PROMPT
00:46:33 ++ hash -r
00:46:33 + omero admin stop
00:46:35 Waiting on shutdown. Use CTRL-C to exit
00:46:35 .+ sleep 5
00:46:50 + deactivate
00:46:50 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:50 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:50 + export PATH
00:46:50 + unset _OLD_VIRTUAL_PATH
00:46:50 + '[' -n '' ']'
00:46:50 + hash -r
00:46:50 + '[' -n '' ']'
00:46:50 + unset VIRTUAL_ENV
00:46:50 + unset VIRTUAL_ENV_PROMPT
00:46:50 + '[' '!' '' = nondestructive ']'
00:46:50 + unset -f deactivate
00:46:50 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:51 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:54 + '[' false = true ']'
00:46:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:54 Skipping PURGE_DATA:CleanDbAndRepo
00:46:54 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:56 Copied 1 artifact from "OMERO-build" build number 45
00:46:56 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 41
00:46:56 Copied 2 artifacts from "OMERO-build-build" build number 45
00:46:56 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 39
00:46:56 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16598765053214614275.sh
00:46:56 + source /home/settings.env
00:46:56 ++ OMERO_DB_HOST=pg
00:46:56 ++ OMERO_DB_USER=postgres
00:46:56 ++ OMERO_DB_PASS=
00:46:56 ++ OMERO_ROOT_PASS=omero
00:46:56 ++ OMERO_DATA_DIR=/OMERO
00:46:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:56 + OMERO_DB_NAME=OMERO-server
00:46:56 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:56 + mkdir -p /home/omero/omero-server-data
00:46:56 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:56 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:56 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:56 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:56 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:56 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:56 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:56 ++ ls OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45.zip
00:46:56 + ZIP=OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45.zip
00:46:56 + '[' '!' -z '' ']'
00:46:56 + DIST=OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45
00:46:56 + unzip OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45.zip
00:46:56 Archive: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45.zip
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/blitz/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/grid/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/profiles/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/error/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/grid/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/janelia/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/matplotlib/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/ncsa_paledit/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/seaborn/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/luts/wcif/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/analysis_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/annotation_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/export_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/figure_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/import_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/scripts/omero/util_scripts/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/server/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/share/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/share/licenses/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/misc/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__1/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__10/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__11/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__2/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__3/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__4/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__5/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__6/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__7/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__8/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3A__9/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3__4/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3__5/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3__6/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO3__7/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.1__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.2__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.2__0/t/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.3__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.4__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.0__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.1__1/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.2__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__1/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__2/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__3/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/var/
00:46:56 creating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/var/tmp/
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/LICENSE.txt
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/backup.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/blitz/mail-senders.example
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/blitz/mail-server.example
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/build.properties
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/env.bat
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/env.sh
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/hibernate.properties
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/ice.config
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/logback-cli.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/logback-indexing-cli.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/logback-indexing.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/logback.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/mime.types
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/node1.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/node2.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/omero.properties
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/profiles/psql
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/rollover.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/Windows.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/error/maintainance.html
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/grid/README
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/grid/default.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/grid/templates.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/grid/windefault.xml
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/ice.config
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/internal.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/master.cfg
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/templates/robot.template
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/etc/testdropbox.config
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/history.rst
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/OMEZarrReader.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/accessors-smart.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/activation.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aggdesigner-algorithm.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aircompressor.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/antlr.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aopalliance.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/apiguardian-api.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/asm.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/avatica-core.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/avatica-metrics.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aws-java-sdk-core.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aws-java-sdk-kms.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/aws-java-sdk-s3.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/base.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-anim.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-awt-util.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-bridge.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-codec.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-constants.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-css.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-dom.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-ext.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-gvt.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-i18n.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-parser.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-script.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-shared-resources.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-svg-dom.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-svggen.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-transcoder.jar
00:46:56 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/lib/client/batik-util.jar
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00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO4__0/OMERO3A__11.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/psql-header.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/schema.sql
00:46:58 inflating: OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45/sql/psql/OMERO5.4__0/views.sql
00:46:58 + rm -f OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45.zip
00:46:58 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-588-d0082c3e4f-ice36-b45 /home/omero/workspace/OMERO-server/OMERO.server
00:46:58 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:46:58 + awsSdkVersion=2.34.6
00:46:58 + jacksonVersion=2.20.0
00:46:58 + logbackVersion=1.3.14
00:46:58 + zarrJavaVersion=0.0.10
00:46:58 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:58 --2026-02-06 00:46:58-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:59 HTTP request sent, awaiting response... 200 OK
00:46:59 Length: 4083366 (3.9M) [application/java-archive]
00:46:59 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:46:59
00:46:59 0K .......... .......... .......... .......... .......... 1% 33.2M 0s
00:46:59 50K .......... .......... .......... .......... .......... 2% 3.57M 1s
00:46:59 100K .......... .......... .......... .......... .......... 3% 4.03M 1s
00:46:59 150K .......... .......... .......... .......... .......... 5% 28.3M 1s
00:46:59 200K .......... .......... .......... .......... .......... 6% 282M 0s
00:46:59 250K .......... .......... .......... .......... .......... 7% 63.4M 0s
00:46:59 300K .......... .......... .......... .......... .......... 8% 65.6M 0s
00:46:59 350K .......... .......... .......... .......... .......... 10% 4.76M 0s
00:46:59 400K .......... .......... .......... .......... .......... 11% 29.1M 0s
00:46:59 450K .......... .......... .......... .......... .......... 12% 55.9M 0s
00:46:59 500K .......... .......... .......... .......... .......... 13% 71.6M 0s
00:46:59 550K .......... .......... .......... .......... .......... 15% 83.0M 0s
00:46:59 600K .......... .......... .......... .......... .......... 16% 4.97M 0s
00:46:59 650K .......... .......... .......... .......... .......... 17% 18.5M 0s
00:46:59 700K .......... .......... .......... .......... .......... 18% 96.1M 0s
00:46:59 750K .......... .......... .......... .......... .......... 20% 270M 0s
00:46:59 800K .......... .......... .......... .......... .......... 21% 59.9M 0s
00:46:59 850K .......... .......... .......... .......... .......... 22% 5.16M 0s
00:46:59 900K .......... .......... .......... .......... .......... 23% 16.1M 0s
00:46:59 950K .......... .......... .......... .......... .......... 25% 127M 0s
00:46:59 1000K .......... .......... .......... .......... .......... 26% 107M 0s
00:46:59 1050K .......... .......... .......... .......... .......... 27% 66.7M 0s
00:46:59 1100K .......... .......... .......... .......... .......... 28% 4.73M 0s
00:46:59 1150K .......... .......... .......... .......... .......... 30% 29.1M 0s
00:46:59 1200K .......... .......... .......... .......... .......... 31% 59.8M 0s
00:46:59 1250K .......... .......... .......... .......... .......... 32% 235M 0s
00:46:59 1300K .......... .......... .......... .......... .......... 33% 49.8M 0s
00:46:59 1350K .......... .......... .......... .......... .......... 35% 4.92M 0s
00:46:59 1400K .......... .......... .......... .......... .......... 36% 23.9M 0s
00:46:59 1450K .......... .......... .......... .......... .......... 37% 17.7M 0s
00:46:59 1500K .......... .......... .......... .......... .......... 38% 17.9M 0s
00:46:59 1550K .......... .......... .......... .......... .......... 40% 17.6M 0s
00:46:59 1600K .......... .......... .......... .......... .......... 41% 25.0M 0s
00:46:59 1650K .......... .......... .......... .......... .......... 42% 9.84M 0s
00:46:59 1700K .......... .......... .......... .......... .......... 43% 33.5M 0s
00:46:59 1750K .......... .......... .......... .......... .......... 45% 17.4M 0s
00:46:59 1800K .......... .......... .......... .......... .......... 46% 17.3M 0s
00:46:59 1850K .......... .......... .......... .......... .......... 47% 25.9M 0s
00:46:59 1900K .......... .......... .......... .......... .......... 48% 15.2M 0s
00:46:59 1950K .......... .......... .......... .......... .......... 50% 20.3M 0s
00:46:59 2000K .......... .......... .......... .......... .......... 51% 20.5M 0s
00:46:59 2050K .......... .......... .......... .......... .......... 52% 13.3M 0s
00:46:59 2100K .......... .......... .......... .......... .......... 53% 20.2M 0s
00:46:59 2150K .......... .......... .......... .......... .......... 55% 15.9M 0s
00:46:59 2200K .......... .......... .......... .......... .......... 56% 18.8M 0s
00:46:59 2250K .......... .......... .......... .......... .......... 57% 24.9M 0s
00:46:59 2300K .......... .......... .......... .......... .......... 58% 11.7M 0s
00:46:59 2350K .......... .......... .......... .......... .......... 60% 27.8M 0s
00:46:59 2400K .......... .......... .......... .......... .......... 61% 17.3M 0s
00:46:59 2450K .......... .......... .......... .......... .......... 62% 17.0M 0s
00:46:59 2500K .......... .......... .......... .......... .......... 63% 22.3M 0s
00:46:59 2550K .......... .......... .......... .......... .......... 65% 12.1M 0s
00:46:59 2600K .......... .......... .......... .......... .......... 66% 28.4M 0s
00:46:59 2650K .......... .......... .......... .......... .......... 67% 14.3M 0s
00:46:59 2700K .......... .......... .......... .......... .......... 68% 15.4M 0s
00:46:59 2750K .......... .......... .......... .......... .......... 70% 38.3M 0s
00:46:59 2800K .......... .......... .......... .......... .......... 71% 17.1M 0s
00:46:59 2850K .......... .......... .......... .......... .......... 72% 17.2M 0s
00:46:59 2900K .......... .......... .......... .......... .......... 73% 17.8M 0s
00:46:59 2950K .......... .......... .......... .......... .......... 75% 13.1M 0s
00:46:59 3000K .......... .......... .......... .......... .......... 76% 33.1M 0s
00:46:59 3050K .......... .......... .......... .......... .......... 77% 17.0M 0s
00:46:59 3100K .......... .......... .......... .......... .......... 78% 17.9M 0s
00:46:59 3150K .......... .......... .......... .......... .......... 80% 17.2M 0s
00:46:59 3200K .......... .......... .......... .......... .......... 81% 11.4M 0s
00:46:59 3250K .......... .......... .......... .......... .......... 82% 29.9M 0s
00:46:59 3300K .......... .......... .......... .......... .......... 84% 19.8M 0s
00:46:59 3350K .......... .......... .......... .......... .......... 85% 18.5M 0s
00:46:59 3400K .......... .......... .......... .......... .......... 86% 19.4M 0s
00:46:59 3450K .......... .......... .......... .......... .......... 87% 33.9M 0s
00:46:59 3500K .......... .......... .......... .......... .......... 89% 12.5M 0s
00:46:59 3550K .......... .......... .......... .......... .......... 90% 16.2M 0s
00:46:59 3600K .......... .......... .......... .......... .......... 91% 15.4M 0s
00:46:59 3650K .......... .......... .......... .......... .......... 92% 24.7M 0s
00:46:59 3700K .......... .......... .......... .......... .......... 94% 28.1M 0s
00:46:59 3750K .......... .......... .......... .......... .......... 95% 13.6M 0s
00:46:59 3800K .......... .......... .......... .......... .......... 96% 15.7M 0s
00:46:59 3850K .......... .......... .......... .......... .......... 97% 30.2M 0s
00:46:59 3900K .......... .......... .......... .......... .......... 99% 12.9M 0s
00:46:59 3950K .......... .......... .......... ....... 100% 41.4M=0.2s
00:46:59
00:46:59 2026-02-06 00:46:59 (16.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:46:59
00:46:59 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:59 --2026-02-06 00:46:59-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:59 HTTP request sent, awaiting response... 200 OK
00:46:59 Length: 234962 (229K) [application/java-archive]
00:46:59 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:46:59
00:46:59 0K .......... .......... .......... .......... .......... 21% 3.42M 0s
00:46:59 50K .......... .......... .......... .......... .......... 43% 8.41M 0s
00:46:59 100K .......... .......... .......... .......... .......... 65% 4.59M 0s
00:46:59 150K .......... .......... .......... .......... .......... 87% 8.95M 0s
00:46:59 200K .......... .......... ......... 100% 14.3M=0.04s
00:46:59
00:46:59 2026-02-06 00:46:59 (5.87 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:46:59
00:46:59 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:59 --2026-02-06 00:46:59-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:00 HTTP request sent, awaiting response... 200 OK
00:47:00 Length: 192161 (188K) [application/java-archive]
00:47:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:47:00
00:47:00 0K .......... .......... .......... .......... .......... 26% 3.55M 0s
00:47:00 50K .......... .......... .......... .......... .......... 53% 8.54M 0s
00:47:00 100K .......... .......... .......... .......... .......... 79% 4.60M 0s
00:47:00 150K .......... .......... .......... ....... 100% 10.2M=0.03s
00:47:00
00:47:00 2026-02-06 00:47:00 (5.44 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:47:00
00:47:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:47:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:00 --2026-02-06 00:47:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:47:00 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:00 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:00 HTTP request sent, awaiting response... 200 OK
00:47:00 Length: 1037104 (1013K) [application/java-archive]
00:47:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:47:00
00:47:00 0K .......... .......... .......... .......... .......... 4% 34.9M 0s
00:47:00 50K .......... .......... .......... .......... .......... 9% 3.57M 0s
00:47:00 100K .......... .......... .......... .......... .......... 14% 77.3M 0s
00:47:00 150K .......... .......... .......... .......... .......... 19% 3.76M 0s
00:47:00 200K .......... .......... .......... .......... .......... 24% 143M 0s
00:47:00 250K .......... .......... .......... .......... .......... 29% 52.2M 0s
00:47:00 300K .......... .......... .......... .......... .......... 34% 326M 0s
00:47:00 350K .......... .......... .......... .......... .......... 39% 57.5M 0s
00:47:00 400K .......... .......... .......... .......... .......... 44% 4.15M 0s
00:47:00 450K .......... .......... .......... .......... .......... 49% 55.9M 0s
00:47:00 500K .......... .......... .......... .......... .......... 54% 262M 0s
00:47:00 550K .......... .......... .......... .......... .......... 59% 80.7M 0s
00:47:00 600K .......... .......... .......... .......... .......... 64% 97.8M 0s
00:47:00 650K .......... .......... .......... .......... .......... 69% 3.98M 0s
00:47:00 700K .......... .......... .......... .......... .......... 74% 281M 0s
00:47:00 750K .......... .......... .......... .......... .......... 78% 107M 0s
00:47:00 800K .......... .......... .......... .......... .......... 83% 61.6M 0s
00:47:00 850K .......... .......... .......... .......... .......... 88% 55.5M 0s
00:47:00 900K .......... .......... .......... .......... .......... 93% 4.26M 0s
00:47:00 950K .......... .......... .......... .......... .......... 98% 97.8M 0s
00:47:00 1000K .......... .. 100% 205M=0.07s
00:47:00
00:47:00 2026-02-06 00:47:00 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:47:00
00:47:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:47:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:00 --2026-02-06 00:47:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:47:00 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:47:00 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:00 HTTP request sent, awaiting response... 200 OK
00:47:00 Length: 33040 (32K) [application/java-archive]
00:47:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:47:00
00:47:00 0K .......... .......... .......... .. 100% 822K=0.04s
00:47:00
00:47:00 2026-02-06 00:47:00 (822 KB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:47:00
00:47:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:47:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:00 --2026-02-06 00:47:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:47:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:47:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:01 HTTP request sent, awaiting response... 200 OK
00:47:01 Length: 13758 (13K) [application/java-archive]
00:47:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:47:01
00:47:01 0K .......... ... 100% 53.2M=0s
00:47:01
00:47:01 2026-02-06 00:47:01 (53.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:47:01
00:47:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:47:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:01 --2026-02-06 00:47:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:47:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:01 HTTP request sent, awaiting response... 200 OK
00:47:01 Length: 962220 (940K) [application/java-archive]
00:47:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:47:01
00:47:01 0K .......... .......... .......... .......... .......... 5% 3.49M 0s
00:47:01 50K .......... .......... .......... .......... .......... 10% 7.59M 0s
00:47:01 100K .......... .......... .......... .......... .......... 15% 4.94M 0s
00:47:01 150K .......... .......... .......... .......... .......... 21% 9.18M 0s
00:47:01 200K .......... .......... .......... .......... .......... 26% 13.0M 0s
00:47:01 250K .......... .......... .......... .......... .......... 31% 11.5M 0s
00:47:01 300K .......... .......... .......... .......... .......... 37% 17.5M 0s
00:47:01 350K .......... .......... .......... .......... .......... 42% 17.2M 0s
00:47:01 400K .......... .......... .......... .......... .......... 47% 19.5M 0s
00:47:01 450K .......... .......... .......... .......... .......... 53% 24.4M 0s
00:47:01 500K .......... .......... .......... .......... .......... 58% 13.5M 0s
00:47:01 550K .......... .......... .......... .......... .......... 63% 13.6M 0s
00:47:01 600K .......... .......... .......... .......... .......... 69% 23.2M 0s
00:47:01 650K .......... .......... .......... .......... .......... 74% 14.5M 0s
00:47:01 700K .......... .......... .......... .......... .......... 79% 44.5M 0s
00:47:01 750K .......... .......... .......... .......... .......... 85% 13.9M 0s
00:47:01 800K .......... .......... .......... .......... .......... 90% 14.1M 0s
00:47:01 850K .......... .......... .......... .......... .......... 95% 21.9M 0s
00:47:01 900K .......... .......... .......... ......... 100% 22.6M=0.08s
00:47:01
00:47:01 2026-02-06 00:47:01 (11.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:47:01
00:47:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:47:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:01 --2026-02-06 00:47:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:47:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:47:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:01 HTTP request sent, awaiting response... 200 OK
00:47:01 Length: 30963 (30K) [application/java-archive]
00:47:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:47:01
00:47:01 0K .......... .......... .......... 100% 37.2M=0.001s
00:47:01
00:47:01 2026-02-06 00:47:01 (37.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:47:01
00:47:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:47:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:01 --2026-02-06 00:47:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:47:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:47:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:01 HTTP request sent, awaiting response... 200 OK
00:47:02 Length: 241618 (236K) [application/java-archive]
00:47:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:47:02
00:47:02 0K .......... .......... .......... .......... .......... 21% 34.6M 0s
00:47:02 50K .......... .......... .......... .......... .......... 42% 3.60M 0s
00:47:02 100K .......... .......... .......... .......... .......... 63% 3.89M 0s
00:47:02 150K .......... .......... .......... .......... .......... 84% 45.4M 0s
00:47:02 200K .......... .......... .......... ..... 100% 128M=0.03s
00:47:02
00:47:02 2026-02-06 00:47:02 (7.98 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:47:02
00:47:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:47:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:02 --2026-02-06 00:47:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:47:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:47:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:02 HTTP request sent, awaiting response... 200 OK
00:47:02 Length: 91685 (90K) [application/java-archive]
00:47:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:47:02
00:47:02 0K .......... .......... .......... .......... .......... 55% 34.2M 0s
00:47:02 50K .......... .......... .......... ......... 100% 2.84M=0.02s
00:47:02
00:47:02 2026-02-06 00:47:02 (5.82 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:47:02
00:47:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:47:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:02 --2026-02-06 00:47:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:47:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:47:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:02 HTTP request sent, awaiting response... 200 OK
00:47:02 Length: 66309 (65K) [application/java-archive]
00:47:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:47:02
00:47:02 0K .......... .......... .......... .......... .......... 77% 35.0M 0s
00:47:02 50K .......... .... 100% 165M=0.001s
00:47:02
00:47:02 2026-02-06 00:47:02 (42.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:47:02
00:47:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:47:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:02 --2026-02-06 00:47:02-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:47:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:02 HTTP request sent, awaiting response... 200 OK
00:47:02 Length: 593063 (579K) [application/java-archive]
00:47:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:47:02
00:47:02 0K .......... .......... .......... .......... .......... 8% 35.8M 0s
00:47:02 50K .......... .......... .......... .......... .......... 17% 3.56M 0s
00:47:02 100K .......... .......... .......... .......... .......... 25% 72.1M 0s
00:47:02 150K .......... .......... .......... .......... .......... 34% 3.78M 0s
00:47:02 200K .......... .......... .......... .......... .......... 43% 59.9M 0s
00:47:02 250K .......... .......... .......... .......... .......... 51% 71.5M 0s
00:47:02 300K .......... .......... .......... .......... .......... 60% 153M 0s
00:47:02 350K .......... .......... .......... .......... .......... 69% 60.9M 0s
00:47:02 400K .......... .......... .......... .......... .......... 77% 4.42M 0s
00:47:02 450K .......... .......... .......... .......... .......... 86% 57.4M 0s
00:47:02 500K .......... .......... .......... .......... .......... 94% 55.4M 0s
00:47:02 550K .......... .......... ......... 100% 337M=0.04s
00:47:02
00:47:02 2026-02-06 00:47:02 (12.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:47:02
00:47:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:47:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:02 --2026-02-06 00:47:02-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:47:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:03 HTTP request sent, awaiting response... 200 OK
00:47:03 Length: 1688471 (1.6M) [application/java-archive]
00:47:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:47:03
00:47:03 0K .......... .......... .......... .......... .......... 3% 32.5M 0s
00:47:03 50K .......... .......... .......... .......... .......... 6% 3.57M 0s
00:47:03 100K .......... .......... .......... .......... .......... 9% 3.95M 0s
00:47:03 150K .......... .......... .......... .......... .......... 12% 43.0M 0s
00:47:03 200K .......... .......... .......... .......... .......... 15% 76.1M 0s
00:47:03 250K .......... .......... .......... .......... .......... 18% 328M 0s
00:47:03 300K .......... .......... .......... .......... .......... 21% 60.0M 0s
00:47:03 350K .......... .......... .......... .......... .......... 24% 4.10M 0s
00:47:03 400K .......... .......... .......... .......... .......... 27% 61.5M 0s
00:47:03 450K .......... .......... .......... .......... .......... 30% 261M 0s
00:47:03 500K .......... .......... .......... .......... .......... 33% 126M 0s
00:47:03 550K .......... .......... .......... .......... .......... 36% 65.7M 0s
00:47:03 600K .......... .......... .......... .......... .......... 39% 4.21M 0s
00:47:03 650K .......... .......... .......... .......... .......... 42% 130M 0s
00:47:03 700K .......... .......... .......... .......... .......... 45% 84.0M 0s
00:47:03 750K .......... .......... .......... .......... .......... 48% 43.9M 0s
00:47:03 800K .......... .......... .......... .......... .......... 51% 133M 0s
00:47:03 850K .......... .......... .......... .......... .......... 54% 4.10M 0s
00:47:03 900K .......... .......... .......... .......... .......... 57% 261M 0s
00:47:03 950K .......... .......... .......... .......... .......... 60% 126M 0s
00:47:03 1000K .......... .......... .......... .......... .......... 63% 53.1M 0s
00:47:03 1050K .......... .......... .......... .......... .......... 66% 70.7M 0s
00:47:03 1100K .......... .......... .......... .......... .......... 69% 5.11M 0s
00:47:03 1150K .......... .......... .......... .......... .......... 72% 18.8M 0s
00:47:03 1200K .......... .......... .......... .......... .......... 75% 63.8M 0s
00:47:03 1250K .......... .......... .......... .......... .......... 78% 74.7M 0s
00:47:03 1300K .......... .......... .......... .......... .......... 81% 82.9M 0s
00:47:03 1350K .......... .......... .......... .......... .......... 84% 5.35M 0s
00:47:03 1400K .......... .......... .......... .......... .......... 87% 13.3M 0s
00:47:03 1450K .......... .......... .......... .......... .......... 90% 24.4M 0s
00:47:03 1500K .......... .......... .......... .......... .......... 94% 17.6M 0s
00:47:03 1550K .......... .......... .......... .......... .......... 97% 13.2M 0s
00:47:03 1600K .......... .......... .......... .......... ........ 100% 47.3M=0.1s
00:47:03
00:47:03 2026-02-06 00:47:03 (14.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:47:03
00:47:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:47:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:03 --2026-02-06 00:47:03-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:47:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:03 HTTP request sent, awaiting response... 200 OK
00:47:03 Length: 36400 (36K) [application/java-archive]
00:47:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:47:03
00:47:03 0K .......... .......... .......... ..... 100% 33.8M=0.001s
00:47:03
00:47:03 2026-02-06 00:47:03 (33.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:47:03
00:47:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:47:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:03 --2026-02-06 00:47:03-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:47:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:47:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:47:03 HTTP request sent, awaiting response... 200 OK
00:47:03 Length: 79195 (77K) [application/java-archive]
00:47:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:47:03
00:47:03 0K .......... .......... .......... .......... .......... 64% 29.6M 0s
00:47:03 50K .......... .......... ....... 100% 2.13M=0.01s
00:47:03
00:47:03 2026-02-06 00:47:03 (5.33 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:47:03
00:47:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:47:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:03 --2026-02-06 00:47:03-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:47:03 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:47:03 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:47:04 HTTP request sent, awaiting response... 200 OK
00:47:04 Length: 277829 (271K) [application/java-archive]
00:47:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:47:04
00:47:04 0K .......... .......... .......... .......... .......... 18% 31.4M 0s
00:47:04 50K .......... .......... .......... .......... .......... 36% 3.60M 0s
00:47:04 100K .......... .......... .......... .......... .......... 55% 3.98M 0s
00:47:04 150K .......... .......... .......... .......... .......... 73% 35.6M 0s
00:47:04 200K .......... .......... .......... .......... .......... 92% 225M 0s
00:47:04 250K .......... .......... . 100% 250M=0.03s
00:47:04
00:47:04 2026-02-06 00:47:04 (9.12 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:47:04
00:47:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:47:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:04 --2026-02-06 00:47:04-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:47:04 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:47:04 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:47:04 HTTP request sent, awaiting response... 200 OK
00:47:04 Length: 579673 (566K) [application/java-archive]
00:47:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:47:04
00:47:04 0K .......... .......... .......... .......... .......... 8% 34.6M 0s
00:47:04 50K .......... .......... .......... .......... .......... 17% 3.54M 0s
00:47:04 100K .......... .......... .......... .......... .......... 26% 3.94M 0s
00:47:04 150K .......... .......... .......... .......... .......... 35% 47.4M 0s
00:47:04 200K .......... .......... .......... .......... .......... 44% 90.3M 0s
00:47:04 250K .......... .......... .......... .......... .......... 52% 67.9M 0s
00:47:04 300K .......... .......... .......... .......... .......... 61% 60.2M 0s
00:47:04 350K .......... .......... .......... .......... .......... 70% 4.67M 0s
00:47:04 400K .......... .......... .......... .......... .......... 79% 33.4M 0s
00:47:04 450K .......... .......... .......... .......... .......... 88% 58.3M 0s
00:47:04 500K .......... .......... .......... .......... .......... 97% 59.2M 0s
00:47:04 550K .......... ...... 100% 311M=0.04s
00:47:04
00:47:04 2026-02-06 00:47:04 (12.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:47:04
00:47:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:47:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:04 --2026-02-06 00:47:04-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:47:04 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:47:04 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:47:04 HTTP request sent, awaiting response... 200 OK
00:47:04 Length: 175836 (172K) [application/java-archive]
00:47:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:47:04
00:47:04 0K .......... .......... .......... .......... .......... 29% 34.3M 0s
00:47:04 50K .......... .......... .......... .......... .......... 58% 3.60M 0s
00:47:04 100K .......... .......... .......... .......... .......... 87% 3.99M 0s
00:47:04 150K .......... .......... . 100% 172M=0.03s
00:47:04
00:47:04 2026-02-06 00:47:04 (6.13 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:47:04
00:47:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:47:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:04 --2026-02-06 00:47:04-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:47:04 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:04 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:47:04 HTTP request sent, awaiting response... 200 OK
00:47:05 Length: 889211 (868K) [application/java-archive]
00:47:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:47:05
00:47:05 0K .......... .......... .......... .......... .......... 5% 34.4M 0s
00:47:05 50K .......... .......... .......... .......... .......... 11% 3.58M 0s
00:47:05 100K .......... .......... .......... .......... .......... 17% 3.97M 0s
00:47:05 150K .......... .......... .......... .......... .......... 23% 34.4M 0s
00:47:05 200K .......... .......... .......... .......... .......... 28% 135M 0s
00:47:05 250K .......... .......... .......... .......... .......... 34% 50.9M 0s
00:47:05 300K .......... .......... .......... .......... .......... 40% 252M 0s
00:47:05 350K .......... .......... .......... .......... .......... 46% 4.17M 0s
00:47:05 400K .......... .......... .......... .......... .......... 51% 86.1M 0s
00:47:05 450K .......... .......... .......... .......... .......... 57% 68.8M 0s
00:47:05 500K .......... .......... .......... .......... .......... 63% 338M 0s
00:47:05 550K .......... .......... .......... .......... .......... 69% 54.1M 0s
00:47:05 600K .......... .......... .......... .......... .......... 74% 4.86M 0s
00:47:05 650K .......... .......... .......... .......... .......... 80% 26.6M 0s
00:47:05 700K .......... .......... .......... .......... .......... 86% 58.5M 0s
00:47:05 750K .......... .......... .......... .......... .......... 92% 90.3M 0s
00:47:05 800K .......... .......... .......... .......... .......... 97% 108M 0s
00:47:05 850K .......... ........ 100% 280M=0.06s
00:47:05
00:47:05 2026-02-06 00:47:05 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:47:05
00:47:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:47:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:05 --2026-02-06 00:47:05-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:47:05 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:47:05 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:47:05 HTTP request sent, awaiting response... 200 OK
00:47:05 Length: 736051 (719K) [application/java-archive]
00:47:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:47:05
00:47:05 0K .......... .......... .......... .......... .......... 6% 30.0M 0s
00:47:05 50K .......... .......... .......... .......... .......... 13% 3.57M 0s
00:47:05 100K .......... .......... .......... .......... .......... 20% 189M 0s
00:47:05 150K .......... .......... .......... .......... .......... 27% 3.68M 0s
00:47:05 200K .......... .......... .......... .......... .......... 34% 117M 0s
00:47:05 250K .......... .......... .......... .......... .......... 41% 57.0M 0s
00:47:05 300K .......... .......... .......... .......... .......... 48% 333M 0s
00:47:05 350K .......... .......... .......... .......... .......... 55% 4.59M 0s
00:47:05 400K .......... .......... .......... .......... .......... 62% 24.5M 0s
00:47:05 450K .......... .......... .......... .......... .......... 69% 158M 0s
00:47:05 500K .......... .......... .......... .......... .......... 76% 74.1M 0s
00:47:05 550K .......... .......... .......... .......... .......... 83% 156M 0s
00:47:05 600K .......... .......... .......... .......... .......... 90% 59.6M 0s
00:47:05 650K .......... .......... .......... .......... .......... 97% 4.25M 0s
00:47:05 700K .......... ........ 100% 237M=0.06s
00:47:05
00:47:05 2026-02-06 00:47:05 (12.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:47:05
00:47:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:47:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:05 --2026-02-06 00:47:05-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:47:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:47:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:05 HTTP request sent, awaiting response... 200 OK
00:47:05 Length: 331034 (323K) [application/java-archive]
00:47:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:47:05
00:47:05 0K .......... .......... .......... .......... .......... 15% 35.7M 0s
00:47:05 50K .......... .......... .......... .......... .......... 30% 3.57M 0s
00:47:05 100K .......... .......... .......... .......... .......... 46% 3.94M 0s
00:47:05 150K .......... .......... .......... .......... .......... 61% 35.8M 0s
00:47:05 200K .......... .......... .......... .......... .......... 77% 166M 0s
00:47:05 250K .......... .......... .......... .......... .......... 92% 68.4M 0s
00:47:05 300K .......... .......... ... 100% 347M=0.03s
00:47:05
00:47:05 2026-02-06 00:47:05 (10.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:47:05
00:47:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:47:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:05 --2026-02-06 00:47:05-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:47:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:05 HTTP request sent, awaiting response... 200 OK
00:47:05 Length: 6749842 (6.4M) [application/java-archive]
00:47:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:47:05
00:47:05 0K .......... .......... .......... .......... .......... 0% 34.9M 0s
00:47:05 50K .......... .......... .......... .......... .......... 1% 3.56M 1s
00:47:05 100K .......... .......... .......... .......... .......... 2% 89.7M 1s
00:47:05 150K .......... .......... .......... .......... .......... 3% 3.77M 1s
00:47:05 200K .......... .......... .......... .......... .......... 3% 80.1M 1s
00:47:05 250K .......... .......... .......... .......... .......... 4% 273M 1s
00:47:05 300K .......... .......... .......... .......... .......... 5% 61.8M 1s
00:47:05 350K .......... .......... .......... .......... .......... 6% 58.3M 0s
00:47:05 400K .......... .......... .......... .......... .......... 6% 4.17M 1s
00:47:05 450K .......... .......... .......... .......... .......... 7% 82.2M 1s
00:47:05 500K .......... .......... .......... .......... .......... 8% 253M 0s
00:47:05 550K .......... .......... .......... .......... .......... 9% 60.7M 0s
00:47:05 600K .......... .......... .......... .......... .......... 9% 57.6M 0s
00:47:05 650K .......... .......... .......... .......... .......... 10% 4.27M 0s
00:47:05 700K .......... .......... .......... .......... .......... 11% 92.1M 0s
00:47:05 750K .......... .......... .......... .......... .......... 12% 86.7M 0s
00:47:05 800K .......... .......... .......... .......... .......... 12% 83.1M 0s
00:47:05 850K .......... .......... .......... .......... .......... 13% 61.1M 0s
00:47:05 900K .......... .......... .......... .......... .......... 14% 4.19M 0s
00:47:05 950K .......... .......... .......... .......... .......... 15% 84.1M 0s
00:47:05 1000K .......... .......... .......... .......... .......... 15% 240M 0s
00:47:05 1050K .......... .......... .......... .......... .......... 16% 76.9M 0s
00:47:05 1100K .......... .......... .......... .......... .......... 17% 58.6M 0s
00:47:05 1150K .......... .......... .......... .......... .......... 18% 4.24M 0s
00:47:06 1200K .......... .......... .......... .......... .......... 18% 93.3M 0s
00:47:06 1250K .......... .......... .......... .......... .......... 19% 63.5M 0s
00:47:06 1300K .......... .......... .......... .......... .......... 20% 275M 0s
00:47:06 1350K .......... .......... .......... .......... .......... 21% 60.0M 0s
00:47:06 1400K .......... .......... .......... .......... .......... 21% 4.14M 0s
00:47:06 1450K .......... .......... .......... .......... .......... 22% 24.4M 0s
00:47:06 1500K .......... .......... .......... .......... .......... 23% 17.4M 0s
00:47:06 1550K .......... .......... .......... .......... .......... 24% 17.3M 0s
00:47:06 1600K .......... .......... .......... .......... .......... 25% 17.9M 0s
00:47:06 1650K .......... .......... .......... .......... .......... 25% 13.8M 0s
00:47:06 1700K .......... .......... .......... .......... .......... 26% 18.4M 0s
00:47:06 1750K .......... .......... .......... .......... .......... 27% 17.1M 0s
00:47:06 1800K .......... .......... .......... .......... .......... 28% 18.3M 0s
00:47:06 1850K .......... .......... .......... .......... .......... 28% 25.5M 0s
00:47:06 1900K .......... .......... .......... .......... .......... 29% 14.1M 0s
00:47:06 1950K .......... .......... .......... .......... .......... 30% 29.6M 0s
00:47:06 2000K .......... .......... .......... .......... .......... 31% 11.3M 0s
00:47:06 2050K .......... .......... .......... .......... .......... 31% 21.0M 0s
00:47:06 2100K .......... .......... .......... .......... .......... 32% 25.2M 0s
00:47:06 2150K .......... .......... .......... .......... .......... 33% 14.4M 0s
00:47:06 2200K .......... .......... .......... .......... .......... 34% 26.5M 0s
00:47:06 2250K .......... .......... .......... .......... .......... 34% 13.0M 0s
00:47:06 2300K .......... .......... .......... .......... .......... 35% 31.4M 0s
00:47:06 2350K .......... .......... .......... .......... .......... 36% 16.2M 0s
00:47:06 2400K .......... .......... .......... .......... .......... 37% 14.2M 0s
00:47:06 2450K .......... .......... .......... .......... .......... 37% 24.1M 0s
00:47:06 2500K .......... .......... .......... .......... .......... 38% 13.4M 0s
00:47:06 2550K .......... .......... .......... .......... .......... 39% 32.3M 0s
00:47:06 2600K .......... .......... .......... .......... .......... 40% 14.8M 0s
00:47:06 2650K .......... .......... .......... .......... .......... 40% 18.8M 0s
00:47:06 2700K .......... .......... .......... .......... .......... 41% 18.7M 0s
00:47:06 2750K .......... .......... .......... .......... .......... 42% 12.5M 0s
00:47:06 2800K .......... .......... .......... .......... .......... 43% 33.6M 0s
00:47:06 2850K .......... .......... .......... .......... .......... 43% 17.6M 0s
00:47:06 2900K .......... .......... .......... .......... .......... 44% 16.6M 0s
00:47:06 2950K .......... .......... .......... .......... .......... 45% 17.9M 0s
00:47:06 3000K .......... .......... .......... .......... .......... 46% 13.2M 0s
00:47:06 3050K .......... .......... .......... .......... .......... 47% 21.0M 0s
00:47:06 3100K .......... .......... .......... .......... .......... 47% 23.5M 0s
00:47:06 3150K .......... .......... .......... .......... .......... 48% 15.3M 0s
00:47:06 3200K .......... .......... .......... .......... .......... 49% 25.2M 0s
00:47:06 3250K .......... .......... .......... .......... .......... 50% 33.9M 0s
00:47:06 3300K .......... .......... .......... .......... .......... 50% 9.85M 0s
00:47:06 3350K .......... .......... .......... .......... .......... 51% 24.0M 0s
00:47:06 3400K .......... .......... .......... .......... .......... 52% 15.4M 0s
00:47:06 3450K .......... .......... .......... .......... .......... 53% 24.7M 0s
00:47:06 3500K .......... .......... .......... .......... .......... 53% 29.1M 0s
00:47:06 3550K .......... .......... .......... .......... .......... 54% 9.97M 0s
00:47:06 3600K .......... .......... .......... .......... .......... 55% 19.6M 0s
00:47:06 3650K .......... .......... .......... .......... .......... 56% 17.5M 0s
00:47:06 3700K .......... .......... .......... .......... .......... 56% 26.5M 0s
00:47:06 3750K .......... .......... .......... .......... .......... 57% 24.6M 0s
00:47:06 3800K .......... .......... .......... .......... .......... 58% 10.4M 0s
00:47:06 3850K .......... .......... .......... .......... .......... 59% 24.7M 0s
00:47:06 3900K .......... .......... .......... .......... .......... 59% 17.3M 0s
00:47:06 3950K .......... .......... .......... .......... .......... 60% 11.6M 0s
00:47:06 4000K .......... .......... .......... .......... .......... 61% 30.4M 0s
00:47:06 4050K .......... .......... .......... .......... .......... 62% 16.4M 0s
00:47:06 4100K .......... .......... .......... .......... .......... 62% 16.6M 0s
00:47:06 4150K .......... .......... .......... .......... .......... 63% 25.7M 0s
00:47:06 4200K .......... .......... .......... .......... .......... 64% 11.5M 0s
00:47:06 4250K .......... .......... .......... .......... .......... 65% 30.4M 0s
00:47:06 4300K .......... .......... .......... .......... .......... 65% 16.8M 0s
00:47:06 4350K .......... .......... .......... .......... .......... 66% 23.6M 0s
00:47:06 4400K .......... .......... .......... .......... .......... 67% 16.9M 0s
00:47:06 4450K .......... .......... .......... .......... .......... 68% 11.8M 0s
00:47:06 4500K .......... .......... .......... .......... .......... 69% 29.3M 0s
00:47:06 4550K .......... .......... .......... .......... .......... 69% 16.8M 0s
00:47:06 4600K .......... .......... .......... .......... .......... 70% 24.0M 0s
00:47:06 4650K .......... .......... .......... .......... .......... 71% 29.6M 0s
00:47:06 4700K .......... .......... .......... .......... .......... 72% 10.3M 0s
00:47:06 4750K .......... .......... .......... .......... .......... 72% 20.3M 0s
00:47:06 4800K .......... .......... .......... .......... .......... 73% 14.3M 0s
00:47:06 4850K .......... .......... .......... .......... .......... 74% 31.4M 0s
00:47:06 4900K .......... .......... .......... .......... .......... 75% 25.9M 0s
00:47:06 4950K .......... .......... .......... .......... .......... 75% 12.5M 0s
00:47:06 5000K .......... .......... .......... .......... .......... 76% 28.1M 0s
00:47:06 5050K .......... .......... .......... .......... .......... 77% 12.3M 0s
00:47:06 5100K .......... .......... .......... .......... .......... 78% 35.2M 0s
00:47:06 5150K .......... .......... .......... .......... .......... 78% 17.5M 0s
00:47:06 5200K .......... .......... .......... .......... .......... 79% 12.8M 0s
00:47:06 5250K .......... .......... .......... .......... .......... 80% 20.1M 0s
00:47:06 5300K .......... .......... .......... .......... .......... 81% 12.7M 0s
00:47:06 5350K .......... .......... .......... .......... .......... 81% 30.1M 0s
00:47:06 5400K .......... .......... .......... .......... .......... 82% 18.1M 0s
00:47:06 5450K .......... .......... .......... .......... .......... 83% 15.9M 0s
00:47:06 5500K .......... .......... .......... .......... .......... 84% 32.6M 0s
00:47:06 5550K .......... .......... .......... .......... .......... 84% 9.20M 0s
00:47:06 5600K .......... .......... .......... .......... .......... 85% 35.1M 0s
00:47:06 5650K .......... .......... .......... .......... .......... 86% 25.1M 0s
00:47:06 5700K .......... .......... .......... .......... .......... 87% 12.6M 0s
00:47:06 5750K .......... .......... .......... .......... .......... 87% 28.1M 0s
00:47:06 5800K .......... .......... .......... .......... .......... 88% 15.0M 0s
00:47:06 5850K .......... .......... .......... .......... .......... 89% 17.0M 0s
00:47:06 5900K .......... .......... .......... .......... .......... 90% 26.1M 0s
00:47:06 5950K .......... .......... .......... .......... .......... 91% 12.3M 0s
00:47:06 6000K .......... .......... .......... .......... .......... 91% 21.4M 0s
00:47:06 6050K .......... .......... .......... .......... .......... 92% 18.6M 0s
00:47:06 6100K .......... .......... .......... .......... .......... 93% 16.3M 0s
00:47:06 6150K .......... .......... .......... .......... .......... 94% 27.6M 0s
00:47:06 6200K .......... .......... .......... .......... .......... 94% 12.7M 0s
00:47:06 6250K .......... .......... .......... .......... .......... 95% 29.6M 0s
00:47:06 6300K .......... .......... .......... .......... .......... 96% 27.0M 0s
00:47:06 6350K .......... .......... .......... .......... .......... 97% 10.5M 0s
00:47:06 6400K .......... .......... .......... .......... .......... 97% 22.8M 0s
00:47:06 6450K .......... .......... .......... .......... .......... 98% 15.1M 0s
00:47:06 6500K .......... .......... .......... .......... .......... 99% 27.4M 0s
00:47:06 6550K .......... .......... .......... .......... . 100% 22.0M=0.4s
00:47:06
00:47:06 2026-02-06 00:47:06 (17.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:47:06
00:47:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:47:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:06 --2026-02-06 00:47:06-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:47:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:47:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:47:06 HTTP request sent, awaiting response... 200 OK
00:47:06 Length: 1732435 (1.7M) [application/java-archive]
00:47:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:47:06
00:47:06 0K .......... .......... .......... .......... .......... 2% 35.6M 0s
00:47:06 50K .......... .......... .......... .......... .......... 5% 3.53M 0s
00:47:06 100K .......... .......... .......... .......... .......... 8% 3.95M 0s
00:47:06 150K .......... .......... .......... .......... .......... 11% 41.1M 0s
00:47:06 200K .......... .......... .......... .......... .......... 14% 185M 0s
00:47:06 250K .......... .......... .......... .......... .......... 17% 66.5M 0s
00:47:06 300K .......... .......... .......... .......... .......... 20% 70.0M 0s
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00:47:06 550K .......... .......... .......... .......... .......... 35% 261M 0s
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00:47:06 650K .......... .......... .......... .......... .......... 41% 25.0M 0s
00:47:06 700K .......... .......... .......... .......... .......... 44% 123M 0s
00:47:06 750K .......... .......... .......... .......... .......... 47% 70.0M 0s
00:47:06 800K .......... .......... .......... .......... .......... 50% 60.6M 0s
00:47:06 850K .......... .......... .......... .......... .......... 53% 4.88M 0s
00:47:06 900K .......... .......... .......... .......... .......... 56% 23.2M 0s
00:47:06 950K .......... .......... .......... .......... .......... 59% 307M 0s
00:47:06 1000K .......... .......... .......... .......... .......... 62% 74.8M 0s
00:47:06 1050K .......... .......... .......... .......... .......... 65% 47.0M 0s
00:47:06 1100K .......... .......... .......... .......... .......... 67% 5.03M 0s
00:47:06 1150K .......... .......... .......... .......... .......... 70% 23.4M 0s
00:47:06 1200K .......... .......... .......... .......... .......... 73% 277M 0s
00:47:06 1250K .......... .......... .......... .......... .......... 76% 67.5M 0s
00:47:06 1300K .......... .......... .......... .......... .......... 79% 45.2M 0s
00:47:06 1350K .......... .......... .......... .......... .......... 82% 4.94M 0s
00:47:06 1400K .......... .......... .......... .......... .......... 85% 19.2M 0s
00:47:06 1450K .......... .......... .......... .......... .......... 88% 16.5M 0s
00:47:06 1500K .......... .......... .......... .......... .......... 91% 18.3M 0s
00:47:06 1550K .......... .......... .......... .......... .......... 94% 17.0M 0s
00:47:06 1600K .......... .......... .......... .......... .......... 97% 18.2M 0s
00:47:06 1650K .......... .......... .......... .......... . 100% 21.1M=0.1s
00:47:06
00:47:06 2026-02-06 00:47:06 (14.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:47:06
00:47:06 + for x in *.jar
00:47:06 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:47:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:47:06 ++ deactivate nondestructive
00:47:06 ++ '[' -n '' ']'
00:47:06 ++ '[' -n '' ']'
00:47:06 ++ hash -r
00:47:06 ++ '[' -n '' ']'
00:47:06 ++ unset VIRTUAL_ENV
00:47:06 ++ unset VIRTUAL_ENV_PROMPT
00:47:06 ++ '[' '!' nondestructive = nondestructive ']'
00:47:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:47:06 ++ export VIRTUAL_ENV
00:47:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:06 ++ export PATH
00:47:06 ++ '[' -n '' ']'
00:47:06 ++ '[' -z '' ']'
00:47:06 ++ _OLD_VIRTUAL_PS1=
00:47:06 ++ PS1='(.venv3) '
00:47:06 ++ export PS1
00:47:06 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:47:06 ++ export VIRTUAL_ENV_PROMPT
00:47:06 ++ hash -r
00:47:06 + pip install -U pip
00:47:07 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:47:07 Collecting pip
00:47:07 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:47:07 Installing collected packages: pip
00:47:07 Attempting uninstall: pip
00:47:07 Found existing installation: pip 22.3.1
00:47:07 Uninstalling pip-22.3.1:
00:47:07 Successfully uninstalled pip-22.3.1
00:47:08 Successfully installed pip-26.0.1
00:47:08 WARNING: There was an error checking the latest version of pip.
00:47:08 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:47:08 Collecting zeroc-ice==3.6.5
00:47:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:47:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.9 MB/s 0:00:02
00:47:11 Installing collected packages: zeroc-ice
00:47:12 Successfully installed zeroc-ice-3.6.5
00:47:12 + pip install markdown
00:47:12 Collecting markdown
00:47:12 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:47:12 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:47:12 Installing collected packages: markdown
00:47:13 Successfully installed markdown-3.10.1
00:47:13 + pip install reportlab
00:47:13 Collecting reportlab
00:47:13 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:47:13 Collecting pillow>=9.0.0 (from reportlab)
00:47:13 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:47:13 Collecting charset-normalizer (from reportlab)
00:47:13 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:47:13 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:47:13 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:47:13 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:47:13 Installing collected packages: pillow, charset-normalizer, reportlab
00:47:14
00:47:14 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:47:14 + pip install omego
00:47:15 Collecting omego
00:47:15 Using cached omego-0.7.0-py3-none-any.whl
00:47:15 Collecting future (from omego)
00:47:15 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:47:15 Collecting yaclifw>=0.1.1 (from omego)
00:47:15 Using cached yaclifw-0.2.0-py3-none-any.whl
00:47:15 Collecting six (from yaclifw>=0.1.1->omego)
00:47:15 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:47:15 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:47:15 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:47:15 Installing collected packages: six, future, yaclifw, omego
00:47:15
00:47:15 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:47:15 + pip install tables
00:47:16 Collecting tables
00:47:16 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:47:16 Collecting numpy>=1.20.0 (from tables)
00:47:16 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:47:16 Collecting numexpr>=2.6.2 (from tables)
00:47:16 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:47:16 Collecting packaging (from tables)
00:47:16 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:47:16 Collecting py-cpuinfo (from tables)
00:47:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:47:16 Collecting blosc2>=2.3.0 (from tables)
00:47:16 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:47:16 Collecting typing-extensions>=4.4.0 (from tables)
00:47:16 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:47:16 Collecting ndindex (from blosc2>=2.3.0->tables)
00:47:16 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:47:16 Collecting msgpack (from blosc2>=2.3.0->tables)
00:47:16 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:16 Collecting requests (from blosc2>=2.3.0->tables)
00:47:16 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:47:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:47:17 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:47:17 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:47:17 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:47:17 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:47:17 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:47:17 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:47:17 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:47:17 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:47:17 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:47:17 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:47:17 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:47:17 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:47:17 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:47:17 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:47:17 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:47:17 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:47:17 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:47:17 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:47:17 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:47:17 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:47:20
00:47:20 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:47:20 + pip install jinja2
00:47:21 Collecting jinja2
00:47:21 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:47:21 Collecting MarkupSafe>=2.0 (from jinja2)
00:47:21 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:47:21 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:47:21 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:47:21 Installing collected packages: MarkupSafe, jinja2
00:47:21
00:47:21 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:47:21 + pip install omero-py
00:47:21 Collecting omero-py
00:47:21 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:47:21 Collecting appdirs (from omero-py)
00:47:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:47:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:47:21 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:47:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:47:21 Collecting PyYAML (from omero-py)
00:47:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:47:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:47:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:47:21 Collecting portalocker (from omero-py)
00:47:21 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:47:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:47:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:47:21 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:47:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:47:21 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:47:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:47:21 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:47:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:47:21 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:47:23
00:47:23 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:47:23 + pip install pyarrow
00:47:24 Collecting pyarrow
00:47:24 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:47:24 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
00:47:24 Installing collected packages: pyarrow
00:47:25 Successfully installed pyarrow-23.0.0
00:47:25 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:47:26 Collecting omero-metadata
00:47:26 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-q9fjr_b2/omero-metadata_17f777ccb79e48918de3a04c2bdb1689
00:47:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-q9fjr_b2/omero-metadata_17f777ccb79e48918de3a04c2bdb1689
00:47:27 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b0f3f675bf71054b92142ebfa67b1b56846d027e
00:47:27 Installing build dependencies: started
00:47:27 Installing build dependencies: finished with status 'done'
00:47:27 Getting requirements to build wheel: started
00:47:28 Getting requirements to build wheel: finished with status 'done'
00:47:28 Preparing metadata (pyproject.toml): started
00:47:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:28 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:47:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:47:28 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:47:28 Collecting pandas (from omero-metadata)
00:47:28 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:47:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:47:28 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:47:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:47:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:47:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:47:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:47:28 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:47:28 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:47:28 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:47:28 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:47:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:47:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:47:28 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:47:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:47:28 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:47:28 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:47:28 Building wheels for collected packages: omero-metadata
00:47:28 Building wheel for omero-metadata (pyproject.toml): started
00:47:29 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:47:29 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=d6c7017bd065a9fa845b8383990f0e720a26fc275b0d297fbf54c2e0fd4acd8b
00:47:29 Stored in directory: /tmp/pip-ephem-wheel-cache-bdpghlns/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:47:29 Successfully built omero-metadata
00:47:29 Installing collected packages: python-dateutil, pandas, omero-metadata
00:47:33
00:47:33 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:47:33 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:47:34 Collecting omero-cli-render
00:47:34 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-fn4a6a7h/omero-cli-render_32f334bf1e23467ba2010c45987938e6
00:47:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-fn4a6a7h/omero-cli-render_32f334bf1e23467ba2010c45987938e6
00:47:34 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:35 Switched to a new branch 'merge_ci'
00:47:35 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:35 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 3054a5951c309233d1c7b6239edfae5a1aaa1c1f
00:47:35 Installing build dependencies: started
00:47:36 Installing build dependencies: finished with status 'done'
00:47:36 Getting requirements to build wheel: started
00:47:36 Getting requirements to build wheel: finished with status 'done'
00:47:36 Preparing metadata (pyproject.toml): started
00:47:36 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:47:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:47:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:47:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:47:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:47:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:47:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:47:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:47:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:47:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:47:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:47:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:47:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:47:36 Building wheels for collected packages: omero-cli-render
00:47:36 Building wheel for omero-cli-render (pyproject.toml): started
00:47:36 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:47:36 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=681e13a386aeed655ee13b23b14c9d5d83837b863db61b3564d241daa54ef060
00:47:36 Stored in directory: /tmp/pip-ephem-wheel-cache-c15610o5/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:47:36 Successfully built omero-cli-render
00:47:36 Installing collected packages: omero-cli-render
00:47:36 Successfully installed omero-cli-render-0.8.2.dev0
00:47:36 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:47:37 Collecting omero-cli-duplicate
00:47:37 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_6ps2i7j/omero-cli-duplicate_4b4df9ce83a64d38adaf7e399af0c571
00:47:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_6ps2i7j/omero-cli-duplicate_4b4df9ce83a64d38adaf7e399af0c571
00:47:38 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:38 Switched to a new branch 'merge_ci'
00:47:38 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:38 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 111d286098d74dad6f92db3aec5983c0b2bffc98
00:47:38 Installing build dependencies: started
00:47:39 Installing build dependencies: finished with status 'done'
00:47:39 Getting requirements to build wheel: started
00:47:39 Getting requirements to build wheel: finished with status 'done'
00:47:39 Preparing metadata (pyproject.toml): started
00:47:39 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:39 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:47:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:47:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:47:39 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:47:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:47:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:47:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:47:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:47:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:47:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:47:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:47:39 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:47:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:47:39 Building wheels for collected packages: omero-cli-duplicate
00:47:39 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:47:39 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:47:39 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=03c525bef5b8c1a286f696b2451fb07851caaeae15713cd7ef18af132dc0d6ae
00:47:39 Stored in directory: /tmp/pip-ephem-wheel-cache-3ud0sl8e/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:47:39 Successfully built omero-cli-duplicate
00:47:39 Installing collected packages: omero-cli-duplicate
00:47:39 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:47:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:47:40 Collecting omero-cli-zarr
00:47:40 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-wg8xatdq/omero-cli-zarr_4a2164cc0e824cab8324d5e19632d985
00:47:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-wg8xatdq/omero-cli-zarr_4a2164cc0e824cab8324d5e19632d985
00:47:41 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:41 Switched to a new branch 'merge_ci'
00:47:41 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:41 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 140ffc095920172d34f4570454059491c0c8f469
00:47:41 Installing build dependencies: started
00:47:41 Installing build dependencies: finished with status 'done'
00:47:41 Getting requirements to build wheel: started
00:47:42 Getting requirements to build wheel: finished with status 'done'
00:47:42 Installing backend dependencies: started
00:47:43 Installing backend dependencies: finished with status 'done'
00:47:43 Preparing metadata (pyproject.toml): started
00:47:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:47:43 Collecting ome-zarr<0.12.0,>=0.5.0 (from omero-cli-zarr)
00:47:43 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
00:47:43 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.4.2)
00:47:43 Collecting dask (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:43 Using cached dask-2026.1.2-py3-none-any.whl.metadata (3.8 kB)
00:47:43 Collecting zarr<3,>=2.8.1 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:43 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
00:47:43 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:43 Downloading fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:47:44 Collecting aiohttp<4 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.32.5)
00:47:44 Collecting scikit-image (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:47:44 Collecting toolz (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:47:44 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:47:44 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:47:44 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:47:44 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:44 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:47:45 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:47:45 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:47:45 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:47:45 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.11)
00:47:45 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached asciitree-0.3.3-py3-none-any.whl
00:47:45 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached fasteners-0.20-py3-none-any.whl.metadata (4.8 kB)
00:47:45 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
00:47:45 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:47:45 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (4.15.0)
00:47:45 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Downloading s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:47:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:47:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:47:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:47:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
00:47:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:47:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:47:45 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Downloading aiobotocore-3.1.2-py3-none-any.whl.metadata (26 kB)
00:47:45 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:47:45 Collecting botocore<1.42.43,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:45 Downloading botocore-1.42.42-py3-none-any.whl.metadata (5.9 kB)
00:47:45 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.9.0.post0)
00:47:46 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:47:46 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:47:46 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.43,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.6.3)
00:47:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (1.17.0)
00:47:46 Collecting click>=8.1 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:47:46 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:47:46 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (26.0)
00:47:46 Collecting partd>=1.4.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:47:46 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:47:46 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:47:46 Collecting locket (from partd>=1.4.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:47:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.4.4)
00:47:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2026.1.4)
00:47:46 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:47:46 Collecting networkx>=3.0 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:47:46 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:47:46 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:47:46 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
00:47:46 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:47:46 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
00:47:46 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:47:46 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:47:46 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:47:46 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
00:47:46 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
00:47:46 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:47:46 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:47:46 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:47:46 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:47:46 Downloading fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:47:46 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:47:46 Downloading s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:47:46 Downloading aiobotocore-3.1.2-py3-none-any.whl (87 kB)
00:47:46 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:47:46 Downloading botocore-1.42.42-py3-none-any.whl (14.6 MB)
00:47:47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.6/14.6 MB 21.0 MB/s 0:00:00
00:47:47 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:47:47 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:47:47 Using cached dask-2026.1.2-py3-none-any.whl (1.5 MB)
00:47:47 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:47:47 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:47:47 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:47:47 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:47:47 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:47:47 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:47:47 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:47:47 Using cached fasteners-0.20-py3-none-any.whl (18 kB)
00:47:47 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:47:47 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:47:47 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:47:47 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:47:47 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:47:47 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:47:47 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:47:47 Building wheels for collected packages: omero-cli-zarr
00:47:47 Building wheel for omero-cli-zarr (pyproject.toml): started
00:47:48 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:47:48 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev132+g140ffc0-py3-none-any.whl size=40567 sha256=5a35a69e2feb52993abd16b4e30a13c3e934f4d8f0f4bcc03a77586b85b4b055
00:47:48 Stored in directory: /tmp/pip-ephem-wheel-cache-lx8yu_6a/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:47:48 Successfully built omero-cli-zarr
00:47:48 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:57
00:47:57 Successfully installed aiobotocore-3.1.2 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.4.0 botocore-1.42.42 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.2 deprecated-1.3.1 fasteners-0.20 frozenlist-1.8.0 fsspec-2026.2.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.5.5.dev132+g140ffc0 partd-1.4.2 propcache-0.4.1 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-2.18.7 zipp-3.23.0
00:47:58 + pip install omero-certificates
00:47:58 Collecting omero-certificates
00:47:58 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:47:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:58 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:47:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:47:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:47:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:47:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:47:58 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:47:58 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:58 Installing collected packages: omero-certificates
00:47:58 Successfully installed omero-certificates-0.4.0
00:47:58 + for x in *.tar.gz
00:47:58 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:59 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:59 Installing build dependencies: started
00:47:59 Installing build dependencies: finished with status 'done'
00:47:59 Getting requirements to build wheel: started
00:48:00 Getting requirements to build wheel: finished with status 'done'
00:48:00 Preparing metadata (pyproject.toml): started
00:48:00 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:00 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:48:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:48:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:48:00 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:48:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:48:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:48:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:48:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:48:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:48:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:48:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:48:00 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:48:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:48:00 Building wheels for collected packages: omero-dropbox
00:48:00 Building wheel for omero-dropbox (pyproject.toml): started
00:48:00 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:48:00 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=cb0ca6242a15ddeea5bf58babb1ab09bf672377a2e8b7c2c0078bffff077aaa4
00:48:00 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:48:00 Successfully built omero-dropbox
00:48:00 Installing collected packages: omero-dropbox
00:48:00 Successfully installed omero-dropbox-5.7.1.dev0
00:48:00 + for x in *.tar.gz
00:48:00 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:48:01 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:48:01 Installing build dependencies: started
00:48:01 Installing build dependencies: finished with status 'done'
00:48:01 Getting requirements to build wheel: started
00:48:02 Getting requirements to build wheel: finished with status 'done'
00:48:02 Preparing metadata (pyproject.toml): started
00:48:02 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:02 Building wheels for collected packages: omero_marshal
00:48:02 Building wheel for omero_marshal (pyproject.toml): started
00:48:02 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:48:02 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=2239c11aa8c07b7838ef0c8827e2f4e91b308e761d1b57fdae0c5ff7293c269d
00:48:02 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:48:02 Successfully built omero_marshal
00:48:02 Installing collected packages: omero_marshal
00:48:03 Successfully installed omero_marshal-0.9.2.dev0
00:48:03 + for x in *.tar.gz
00:48:03 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:48:03 Processing ./omero_py-5.22.0.dev0.tar.gz
00:48:03 Installing build dependencies: started
00:48:04 Installing build dependencies: finished with status 'done'
00:48:04 Getting requirements to build wheel: started
00:48:05 Getting requirements to build wheel: finished with status 'done'
00:48:05 Preparing metadata (pyproject.toml): started
00:48:05 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:48:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:48:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.2)
00:48:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:48:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:48:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:48:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:48:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:48:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:48:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:48:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:48:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:48:05 Building wheels for collected packages: omero-py
00:48:05 Building wheel for omero-py (pyproject.toml): started
00:48:06 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:48:06 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786540 sha256=ef31568bda7ed1ef8e56590053e88e847e9908530de75435b0bce16419f3d597
00:48:06 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:48:06 Successfully built omero-py
00:48:06 Installing collected packages: omero-py
00:48:06 Attempting uninstall: omero-py
00:48:06 Found existing installation: omero-py 5.21.3
00:48:06 Uninstalling omero-py-5.21.3:
00:48:06 Successfully uninstalled omero-py-5.21.3
00:48:08 Successfully installed omero-py-5.22.0.dev0
00:48:08 + for x in *.tar.gz
00:48:08 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:48:08 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:48:08 Installing build dependencies: started
00:48:09 Installing build dependencies: finished with status 'done'
00:48:09 Getting requirements to build wheel: started
00:48:10 Getting requirements to build wheel: finished with status 'done'
00:48:10 Preparing metadata (pyproject.toml): started
00:48:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:10 Building wheels for collected packages: omero-scripts
00:48:10 Building wheel for omero-scripts (pyproject.toml): started
00:48:10 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:48:10 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=5d463f9d94f18b8324091a50a6cb832999d8d45c86cfec7076a64eaafa7fd10e
00:48:10 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:48:10 Successfully built omero-scripts
00:48:10 Installing collected packages: omero-scripts
00:48:10 Successfully installed omero-scripts-5.10.1.dev0
00:48:10 + for x in *.tar.gz
00:48:10 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:48:11 Processing ./omero_web-5.30.2.dev0.tar.gz
00:48:11 Installing build dependencies: started
00:48:13 Installing build dependencies: finished with status 'done'
00:48:13 Getting requirements to build wheel: started
00:48:13 Getting requirements to build wheel: finished with status 'done'
00:48:13 Preparing metadata (pyproject.toml): started
00:48:13 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:13 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:48:13 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:48:13 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:48:14 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:48:14 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:48:14 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:48:14 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:48:14 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:48:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:48:14 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:48:14 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:48:14 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:48:14 Using cached gunicorn-25.0.1-py3-none-any.whl.metadata (4.7 kB)
00:48:14 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:48:14 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:48:14 Collecting pytz (from omero-web==5.30.2.dev0)
00:48:14 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:48:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:48:14 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:48:14 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:48:14 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:48:14 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:48:14 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:48:14 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:48:14 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:48:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:48:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:48:14 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
00:48:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:48:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:48:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:48:14 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:48:14 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:48:14 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:48:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:48:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:48:14 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:48:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:48:14 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:48:14 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:48:14 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:48:14 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:48:14 Using cached gunicorn-25.0.1-py3-none-any.whl (169 kB)
00:48:14 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:48:14 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:48:14 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:48:14 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:48:14 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:48:14 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:48:14 Building wheels for collected packages: omero-web
00:48:14 Building wheel for omero-web (pyproject.toml): started
00:48:15 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:48:15 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=bcda4e7e13779809f7ab27971d9e7554335d3aae35406110d365e1b39d3f5021
00:48:15 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:48:15 Successfully built omero-web
00:48:15 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:48:18
00:48:18 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:48:18 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:48:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:48:18 --2026-02-06 00:48:18-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:18 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.110.133, ...
00:48:18 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
00:48:19 HTTP request sent, awaiting response... 200 OK
00:48:19 Length: 137709 (134K) [text/plain]
00:48:19 Saving to: ‘Figure_To_Pdf.py’
00:48:19
00:48:19 0K .......... .......... .......... .......... .......... 37% 3.92M 0s
00:48:19 50K .......... .......... .......... .......... .......... 74% 12.8M 0s
00:48:19 100K .......... .......... .......... .... 100% 6.21M=0.02s
00:48:19
00:48:19 2026-02-06 00:48:19 (6.06 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:48:19
00:48:19 + chmod 755 Figure_To_Pdf.py
00:48:19 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:48:19 + omero config set omero.db.name OMERO-server
00:48:21 + omero config set omero.db.host pg
00:48:22 + omero config set omero.db.user postgres
00:48:24 + omero config set omero.data.dir /home/omero/omero-server-data
00:48:26 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:48:28 + omero config set omero.db.poolsize 25
00:48:30 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:48:31 + omero config set omero.security.trustStorePassword changeit
00:48:33 + omero config set omero.mail.config true
00:48:35 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:48:37 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:48:39 + omero certificates
00:48:40 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:48:40 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:48:40 + '[' false = true ']'
00:48:40 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:48:40 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:48:40 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:48:41 2026-02-06 00:48:41,181 [ omego.db] DEBUG dbcommand => upgrade
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG dbhost => localhost
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG dbname => OMERO-server
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG dbpass => omero
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG dbuser => omero
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG rootpass => omero
00:48:41 2026-02-06 00:48:41,182 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:48:41 2026-02-06 00:48:41,182 [omego.extern] INFO Executing : omero version
00:48:42 OMERO.py version:
00:48:42 OMERO.server version:
00:48:42 5.6.3-588-d0082c3e4f-ice36-b45
00:48:42 5.22.0.dev0
00:48:43 2026-02-06 00:48:43,110 [omego.extern] INFO Completed [1.928 s]
00:48:43 2026-02-06 00:48:43,110 [omego.extern] DEBUG Using omero CLI from omero
00:48:43 2026-02-06 00:48:43,110 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:48:43 2026-02-06 00:48:43,110 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:43 2026-02-06 00:48:43,110 [omego.extern] INFO Executing : omero config get --show-password
00:48:44 2026-02-06 00:48:44,889 [omego.extern] INFO Completed [1.779 s]
00:48:44 2026-02-06 00:48:44,890 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:44 2026-02-06 00:48:44,890 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:48:44 2026-02-06 00:48:44,895 [omego.extern] INFO Completed [0.005 s]
00:48:44 2026-02-06 00:48:44,895 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:48:44 2026-02-06 00:48:44,895 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:48:44
00:48:44 2026-02-06 00:48:44,895 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:44 2026-02-06 00:48:44,895 [omego.extern] INFO Executing : omero config get --show-password
00:48:46 2026-02-06 00:48:46,713 [omego.extern] INFO Completed [1.817 s]
00:48:46 2026-02-06 00:48:46,713 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:46 2026-02-06 00:48:46,713 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:48:46 2026-02-06 00:48:46,722 [omego.extern] INFO Completed [0.009 s]
00:48:46 2026-02-06 00:48:46,722 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
00:48:46 2026-02-06 00:48:46,722 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:46 2026-02-06 00:48:46,722 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:46 2026-02-06 00:48:46,722 [omego.extern] INFO Executing : omero config get --show-password
00:48:48 2026-02-06 00:48:48,496 [omego.extern] INFO Completed [1.773 s]
00:48:48 2026-02-06 00:48:48,496 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:48 2026-02-06 00:48:48,496 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:48 2026-02-06 00:48:48,506 [omego.extern] INFO Completed [0.010 s]
00:48:48 2026-02-06 00:48:48,506 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:48 2026-02-06 00:48:48,506 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:48 2026-02-06 00:48:48,507 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:48 + export LANG=en_US.UTF-8
00:48:48 + LANG=en_US.UTF-8
00:48:48 + export LANGUAGE=en_US:en
00:48:48 + LANGUAGE=en_US:en
00:48:48 + export LC_ALL=en_US.UTF-8
00:48:48 + LC_ALL=en_US.UTF-8
00:48:48 + BUILD_ID=DONT_KILL_ME
00:48:48 + omero admin start
00:48:53 No descriptor given. Using etc/grid/default.xml
00:49:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:49:01 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:49:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:49:01 Waiting on startup. Use CTRL-C to exit
00:49:01 + omero admin waitup
00:49:03 Waiting on startup. Use CTRL-C to exit
00:49:03 + omero admin diagnostics
00:49:05
00:49:05 ================================================================================
00:49:05 OMERO Diagnostics (admin)
00:49:05 ================================================================================
00:49:05
00:49:05 Commands: java -version 17.0.17 (/usr/bin/java)
00:49:05 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:49:05 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:49:05 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:49:05 Commands: psql --version 16.11 (/usr/bin/psql)
00:49:05 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:49:05
00:49:05 Component: OMERO.py 5.22.0.dev0
00:49:05 Component: OMERO.server 5.6.3-588-d0082c3e4f-ice36-b45
00:49:05
00:49:05 Server: icegridnode running
00:49:05 Server: Blitz-0 active (pid = 75478, enabled)
00:49:05 Server: Indexer-0 activating (enabled)
00:49:05 Server: OMERO.Glacier2 active (pid = 75513, enabled)
00:49:05 Server: OMERO.IceStorm active (pid = 75540, enabled)
00:49:05 Server: Processor-0 active (pid = 75529, enabled)
00:49:05 Server: Tables-0 active (pid = 75541, enabled)
00:49:05
00:49:05 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:49:05 Log files: Blitz-0.log 31.0 KB errors=0 warnings=1
00:49:05 Log files: DropBox.log n/a
00:49:05 Log files: FileServer.log n/a
00:49:05 Log files: Indexer-0.log 238 B
00:49:05 Log files: MonitorServer.log n/a
00:49:05 Log files: Processor-0.log 735 B
00:49:05 Log files: Tables-0.log 961 B
00:49:05 Log files: TestDropBox.log n/a
00:49:05 Log files: master.err empty
00:49:05 Log files: master.out 30.1 KB
00:49:05 Log files: Total size 0.06 MB
00:49:05
00:49:05
00:49:05 Environment:OMERO_HOME=(unset)
00:49:05 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:49:05 Environment:OMERO_NODE=(unset)
00:49:05 Environment:OMERO_MASTER=(unset)
00:49:05 Environment:OMERO_USERDIR=(unset)
00:49:05 Environment:OMERO_TMPDIR=(unset)
00:49:05 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:05 Environment:PYTHONPATH=(unset)
00:49:05 Environment:ICE_HOME=/opt/ice-3.6.5
00:49:05 Environment:LD_LIBRARY_PATH=(unset)
00:49:05 Environment:DYLD_LIBRARY_PATH=(unset)
00:49:05
00:49:05 OMERO SSL port:4064
00:49:05 OMERO TCP port:4063
00:49:05 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:49:05 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:49:05
00:49:05 JVM settings: Blitz-${index} -Xmx7200m
00:49:05 JVM settings: Indexer-${index} -Xmx4800m
00:49:05 JVM settings: PixelData-${index} -Xmx7200m
00:49:05 JVM settings: Repository-${index} -Xmx4800m
00:49:05
00:49:05 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 6 February 2026 3fd9d46d9046ed45708b73ce12e26c523105e715
00:49:05 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 6 February 2026 3fd9d46d9046ed45708b73ce12e26c523105e715
00:49:05 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 6 February 2026 3fd9d46d9046ed45708b73ce12e26c523105e715
00:49:05 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 6 February 2026 5714a800a337f73e1a713228406790ee591c2916
00:49:05 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:49:05 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:49:05 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 407ca0bc3a68ef32b9ddb2316a6004d9805925a6
00:49:05 + deactivate
00:49:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:49:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:05 + export PATH
00:49:05 + unset _OLD_VIRTUAL_PATH
00:49:05 + '[' -n '' ']'
00:49:05 + hash -r
00:49:05 + '[' -n '' ']'
00:49:05 + unset VIRTUAL_ENV
00:49:05 + unset VIRTUAL_ENV_PROMPT
00:49:05 + '[' '!' '' = nondestructive ']'
00:49:05 + unset -f deactivate
00:49:05 Finished: SUCCESS
