00:46:20 Started by upstream project "Trigger" build number 75
00:46:20 originally caused by:
00:46:20 Started by timer
00:46:20 Running as SYSTEM
00:46:20 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:46:20 [OMERO-server] $ /bin/bash -xe /tmp/jenkins755899187453595997.sh
00:46:20 + source /home/settings.env
00:46:20 ++ OMERO_DB_HOST=pg
00:46:20 ++ OMERO_DB_USER=postgres
00:46:20 ++ OMERO_DB_PASS=
00:46:20 ++ OMERO_ROOT_PASS=omero
00:46:20 ++ OMERO_DATA_DIR=/OMERO
00:46:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:20 + OMERO_DB_NAME=OMERO-server
00:46:20 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:20 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:20 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:20 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:20 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:46:20 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:20 ++ deactivate nondestructive
00:46:20 ++ '[' -n '' ']'
00:46:20 ++ '[' -n '' ']'
00:46:20 ++ hash -r
00:46:20 ++ '[' -n '' ']'
00:46:20 ++ unset VIRTUAL_ENV
00:46:20 ++ unset VIRTUAL_ENV_PROMPT
00:46:20 ++ '[' '!' nondestructive = nondestructive ']'
00:46:20 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:20 ++ export VIRTUAL_ENV
00:46:20 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:20 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:20 ++ export PATH
00:46:20 ++ '[' -n '' ']'
00:46:20 ++ '[' -z '' ']'
00:46:20 ++ _OLD_VIRTUAL_PS1=
00:46:20 ++ PS1='(.venv3) '
00:46:20 ++ export PS1
00:46:20 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:20 ++ export VIRTUAL_ENV_PROMPT
00:46:20 ++ hash -r
00:46:20 + omero admin stop
00:46:22 Waiting on shutdown. Use CTRL-C to exit
00:46:22 .+ sleep 5
00:46:37 + deactivate
00:46:37 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:37 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:37 + export PATH
00:46:37 + unset _OLD_VIRTUAL_PATH
00:46:37 + '[' -n '' ']'
00:46:37 + hash -r
00:46:37 + '[' -n '' ']'
00:46:37 + unset VIRTUAL_ENV
00:46:37 + unset VIRTUAL_ENV_PROMPT
00:46:37 + '[' '!' '' = nondestructive ']'
00:46:37 + unset -f deactivate
00:46:37 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:38 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:41 + '[' false = true ']'
00:46:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:41 Skipping PURGE_DATA:CleanDbAndRepo
00:46:41 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:43 Copied 1 artifact from "OMERO-build" build number 52
00:46:43 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 48
00:46:43 Copied 2 artifacts from "OMERO-build-build" build number 52
00:46:43 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 46
00:46:43 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12293167735000198280.sh
00:46:43 + source /home/settings.env
00:46:43 ++ OMERO_DB_HOST=pg
00:46:43 ++ OMERO_DB_USER=postgres
00:46:43 ++ OMERO_DB_PASS=
00:46:43 ++ OMERO_ROOT_PASS=omero
00:46:43 ++ OMERO_DATA_DIR=/OMERO
00:46:43 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:43 + OMERO_DB_NAME=OMERO-server
00:46:43 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:43 + mkdir -p /home/omero/omero-server-data
00:46:43 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:43 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:43 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:43 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:43 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:43 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:43 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:43 ++ ls OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52.zip
00:46:43 + ZIP=OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52.zip
00:46:43 + '[' '!' -z '' ']'
00:46:43 + DIST=OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52
00:46:43 + unzip OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52.zip
00:46:43 Archive: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52.zip
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/blitz/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/grid/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/profiles/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/error/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/grid/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/janelia/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/matplotlib/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/ncsa_paledit/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/seaborn/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/luts/wcif/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/analysis_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/annotation_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/export_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/figure_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/import_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/scripts/omero/util_scripts/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/server/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/share/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/share/licenses/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/misc/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__1/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__10/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__11/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__2/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__3/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__4/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__5/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__6/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__7/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__8/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3A__9/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3__4/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3__5/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3__6/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO3__7/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4.1__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4.2__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4.2__0/t/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4.3__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4.4__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO4__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.0__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.1__1/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.2__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__1/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__2/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__3/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/var/
00:46:43 creating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/var/tmp/
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/LICENSE.txt
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/backup.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/blitz/mail-senders.example
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/blitz/mail-server.example
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/build.properties
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/env.bat
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/env.sh
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/hibernate.properties
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/ice.config
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/logback-cli.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/logback-indexing-cli.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/logback-indexing.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/logback.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/mime.types
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/node1.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/node2.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/omero.properties
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/profiles/psql
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/rollover.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/Windows.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/error/maintainance.html
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/grid/README
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/grid/default.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/grid/templates.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/grid/windefault.xml
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/ice.config
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/internal.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/master.cfg
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/templates/robot.template
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/etc/testdropbox.config
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/history.rst
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/OMEZarrReader.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/accessors-smart.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/activation.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aggdesigner-algorithm.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aircompressor.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/antlr.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aopalliance.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/apiguardian-api.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/asm.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/avatica-core.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/avatica-metrics.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aws-java-sdk-core.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aws-java-sdk-kms.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/aws-java-sdk-s3.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/base.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-anim.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-awt-util.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-bridge.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-codec.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-constants.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-css.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-dom.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-ext.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-gvt.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-i18n.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-parser.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-script.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-shared-resources.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-svg-dom.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-svggen.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-transcoder.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-util.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/batik-xml.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/btm.jar
00:46:43 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/lib/client/calcite-core.jar
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00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/psql-header.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/schema.sql
00:46:46 inflating: OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52/sql/psql/OMERO5.4__0/views.sql
00:46:46 + rm -f OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52.zip
00:46:46 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-593-37da7fb5f6-ice36-b52 /home/omero/workspace/OMERO-server/OMERO.server
00:46:46 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:46:46 + awsSdkVersion=2.34.6
00:46:46 + jacksonVersion=2.20.0
00:46:46 + logbackVersion=1.3.14
00:46:46 + zarrJavaVersion=0.0.10
00:46:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:46 --2026-02-13 00:46:46-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:46 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:46 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:46 HTTP request sent, awaiting response... 200 OK
00:46:46 Length: 4083366 (3.9M) [application/java-archive]
00:46:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:46:46
00:46:46 0K .......... .......... .......... .......... .......... 1% 33.6M 0s
00:46:46 50K .......... .......... .......... .......... .......... 2% 3.58M 1s
00:46:46 100K .......... .......... .......... .......... .......... 3% 67.3M 0s
00:46:46 150K .......... .......... .......... .......... .......... 5% 3.80M 1s
00:46:46 200K .......... .......... .......... .......... .......... 6% 172M 0s
00:46:46 250K .......... .......... .......... .......... .......... 7% 53.6M 0s
00:46:46 300K .......... .......... .......... .......... .......... 8% 58.1M 0s
00:46:46 350K .......... .......... .......... .......... .......... 10% 298M 0s
00:46:46 400K .......... .......... .......... .......... .......... 11% 4.26M 0s
00:46:46 450K .......... .......... .......... .......... .......... 12% 106M 0s
00:46:46 500K .......... .......... .......... .......... .......... 13% 53.8M 0s
00:46:46 550K .......... .......... .......... .......... .......... 15% 79.1M 0s
00:46:46 600K .......... .......... .......... .......... .......... 16% 4.79M 0s
00:46:46 650K .......... .......... .......... .......... .......... 17% 28.2M 0s
00:46:46 700K .......... .......... .......... .......... .......... 18% 182M 0s
00:46:46 750K .......... .......... .......... .......... .......... 20% 48.3M 0s
00:46:46 800K .......... .......... .......... .......... .......... 21% 84.3M 0s
00:46:46 850K .......... .......... .......... .......... .......... 22% 4.70M 0s
00:46:46 900K .......... .......... .......... .......... .......... 23% 29.6M 0s
00:46:46 950K .......... .......... .......... .......... .......... 25% 280M 0s
00:46:46 1000K .......... .......... .......... .......... .......... 26% 53.4M 0s
00:46:46 1050K .......... .......... .......... .......... .......... 27% 80.8M 0s
00:46:46 1100K .......... .......... .......... .......... .......... 28% 4.71M 0s
00:46:46 1150K .......... .......... .......... .......... .......... 30% 32.8M 0s
00:46:46 1200K .......... .......... .......... .......... .......... 31% 162M 0s
00:46:46 1250K .......... .......... .......... .......... .......... 32% 52.0M 0s
00:46:46 1300K .......... .......... .......... .......... .......... 33% 77.0M 0s
00:46:46 1350K .......... .......... .......... .......... .......... 35% 4.60M 0s
00:46:46 1400K .......... .......... .......... .......... .......... 36% 20.3M 0s
00:46:46 1450K .......... .......... .......... .......... .......... 37% 17.4M 0s
00:46:46 1500K .......... .......... .......... .......... .......... 38% 25.0M 0s
00:46:46 1550K .......... .......... .......... .......... .......... 40% 17.4M 0s
00:46:46 1600K .......... .......... .......... .......... .......... 41% 15.2M 0s
00:46:46 1650K .......... .......... .......... .......... .......... 42% 12.8M 0s
00:46:46 1700K .......... .......... .......... .......... .......... 43% 18.2M 0s
00:46:46 1750K .......... .......... .......... .......... .......... 45% 25.3M 0s
00:46:46 1800K .......... .......... .......... .......... .......... 46% 17.2M 0s
00:46:46 1850K .......... .......... .......... .......... .......... 47% 20.5M 0s
00:46:46 1900K .......... .......... .......... .......... .......... 48% 13.2M 0s
00:46:46 1950K .......... .......... .......... .......... .......... 50% 21.5M 0s
00:46:46 2000K .......... .......... .......... .......... .......... 51% 17.4M 0s
00:46:46 2050K .......... .......... .......... .......... .......... 52% 17.1M 0s
00:46:46 2100K .......... .......... .......... .......... .......... 53% 24.5M 0s
00:46:46 2150K .......... .......... .......... .......... .......... 55% 15.7M 0s
00:46:46 2200K .......... .......... .......... .......... .......... 56% 20.1M 0s
00:46:46 2250K .......... .......... .......... .......... .......... 57% 16.9M 0s
00:46:46 2300K .......... .......... .......... .......... .......... 58% 20.7M 0s
00:46:46 2350K .......... .......... .......... .......... .......... 60% 17.4M 0s
00:46:46 2400K .......... .......... .......... .......... .......... 61% 15.1M 0s
00:46:46 2450K .......... .......... .......... .......... .......... 62% 13.5M 0s
00:46:46 2500K .......... .......... .......... .......... .......... 63% 25.3M 0s
00:46:46 2550K .......... .......... .......... .......... .......... 65% 20.8M 0s
00:46:46 2600K .......... .......... .......... .......... .......... 66% 17.1M 0s
00:46:46 2650K .......... .......... .......... .......... .......... 67% 15.6M 0s
00:46:46 2700K .......... .......... .......... .......... .......... 68% 22.9M 0s
00:46:46 2750K .......... .......... .......... .......... .......... 70% 15.8M 0s
00:46:46 2800K .......... .......... .......... .......... .......... 71% 17.8M 0s
00:46:46 2850K .......... .......... .......... .......... .......... 72% 17.8M 0s
00:46:46 2900K .......... .......... .......... .......... .......... 73% 16.0M 0s
00:46:46 2950K .......... .......... .......... .......... .......... 75% 18.1M 0s
00:46:46 3000K .......... .......... .......... .......... .......... 76% 20.2M 0s
00:46:46 3050K .......... .......... .......... .......... .......... 77% 25.6M 0s
00:46:46 3100K .......... .......... .......... .......... .......... 78% 13.1M 0s
00:46:46 3150K .......... .......... .......... .......... .......... 80% 16.9M 0s
00:46:46 3200K .......... .......... .......... .......... .......... 81% 14.8M 0s
00:46:46 3250K .......... .......... .......... .......... .......... 82% 19.8M 0s
00:46:46 3300K .......... .......... .......... .......... .......... 84% 23.0M 0s
00:46:46 3350K .......... .......... .......... .......... .......... 85% 16.8M 0s
00:46:46 3400K .......... .......... .......... .......... .......... 86% 12.9M 0s
00:46:46 3450K .......... .......... .......... .......... .......... 87% 19.9M 0s
00:46:46 3500K .......... .......... .......... .......... .......... 89% 14.5M 0s
00:46:46 3550K .......... .......... .......... .......... .......... 90% 34.2M 0s
00:46:46 3600K .......... .......... .......... .......... .......... 91% 18.4M 0s
00:46:46 3650K .......... .......... .......... .......... .......... 92% 16.9M 0s
00:46:46 3700K .......... .......... .......... .......... .......... 94% 21.7M 0s
00:46:46 3750K .......... .......... .......... .......... .......... 95% 30.5M 0s
00:46:46 3800K .......... .......... .......... .......... .......... 96% 11.8M 0s
00:46:46 3850K .......... .......... .......... .......... .......... 97% 18.0M 0s
00:46:46 3900K .......... .......... .......... .......... .......... 99% 15.4M 0s
00:46:46 3950K .......... .......... .......... ....... 100% 28.2M=0.2s
00:46:46
00:46:46 2026-02-13 00:46:46 (16.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:46:46
00:46:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:46 --2026-02-13 00:46:46-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:46 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:46 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:46 HTTP request sent, awaiting response... 200 OK
00:46:46 Length: 234962 (229K) [application/java-archive]
00:46:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:46:46
00:46:46 0K .......... .......... .......... .......... .......... 21% 3.46M 0s
00:46:46 50K .......... .......... .......... .......... .......... 43% 7.71M 0s
00:46:46 100K .......... .......... .......... .......... .......... 65% 4.63M 0s
00:46:46 150K .......... .......... .......... .......... .......... 87% 10.8M 0s
00:46:46 200K .......... .......... ......... 100% 15.4M=0.04s
00:46:46
00:46:46 2026-02-13 00:46:46 (5.99 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:46:46
00:46:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:46 --2026-02-13 00:46:46-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:47 HTTP request sent, awaiting response... 200 OK
00:46:47 Length: 192161 (188K) [application/java-archive]
00:46:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:46:47
00:46:47 0K .......... .......... .......... .......... .......... 26% 33.0M 0s
00:46:47 50K .......... .......... .......... .......... .......... 53% 3.61M 0s
00:46:47 100K .......... .......... .......... .......... .......... 79% 72.1M 0s
00:46:47 150K .......... .......... .......... ....... 100% 2.85M=0.03s
00:46:47
00:46:47 2026-02-13 00:46:47 (6.41 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:46:47
00:46:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:46:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:47 --2026-02-13 00:46:47-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:46:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:47 HTTP request sent, awaiting response... 200 OK
00:46:47 Length: 1037104 (1013K) [application/java-archive]
00:46:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:46:47
00:46:47 0K .......... .......... .......... .......... .......... 4% 3.39M 0s
00:46:47 50K .......... .......... .......... .......... .......... 9% 6.75M 0s
00:46:47 100K .......... .......... .......... .......... .......... 14% 5.35M 0s
00:46:47 150K .......... .......... .......... .......... .......... 19% 8.81M 0s
00:46:47 200K .......... .......... .......... .......... .......... 24% 10.9M 0s
00:46:47 250K .......... .......... .......... .......... .......... 29% 12.4M 0s
00:46:47 300K .......... .......... .......... .......... .......... 34% 17.1M 0s
00:46:47 350K .......... .......... .......... .......... .......... 39% 17.8M 0s
00:46:47 400K .......... .......... .......... .......... .......... 44% 17.0M 0s
00:46:47 450K .......... .......... .......... .......... .......... 49% 14.8M 0s
00:46:47 500K .......... .......... .......... .......... .......... 54% 25.3M 0s
00:46:47 550K .......... .......... .......... .......... .......... 59% 13.5M 0s
00:46:47 600K .......... .......... .......... .......... .......... 64% 24.6M 0s
00:46:47 650K .......... .......... .......... .......... .......... 69% 13.9M 0s
00:46:47 700K .......... .......... .......... .......... .......... 74% 19.6M 0s
00:46:47 750K .......... .......... .......... .......... .......... 78% 26.3M 0s
00:46:47 800K .......... .......... .......... .......... .......... 83% 13.6M 0s
00:46:47 850K .......... .......... .......... .......... .......... 88% 24.3M 0s
00:46:47 900K .......... .......... .......... .......... .......... 93% 21.8M 0s
00:46:47 950K .......... .......... .......... .......... .......... 98% 30.5M 0s
00:46:47 1000K .......... .. 100% 5.29M=0.08s
00:46:47
00:46:47 2026-02-13 00:46:47 (11.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:46:47
00:46:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:46:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:47 --2026-02-13 00:46:47-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:46:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:47 HTTP request sent, awaiting response... 200 OK
00:46:47 Length: 33040 (32K) [application/java-archive]
00:46:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:46:47
00:46:47 0K .......... .......... .......... .. 100% 36.3M=0.001s
00:46:47
00:46:47 2026-02-13 00:46:47 (36.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:46:47
00:46:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:46:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:47 --2026-02-13 00:46:47-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:46:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:48 HTTP request sent, awaiting response... 200 OK
00:46:48 Length: 13758 (13K) [application/java-archive]
00:46:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:46:48
00:46:48 0K .......... ... 100% 22.8M=0.001s
00:46:48
00:46:48 2026-02-13 00:46:48 (22.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:46:48
00:46:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:46:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:48 --2026-02-13 00:46:48-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:46:48 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:48 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:48 HTTP request sent, awaiting response... 200 OK
00:46:48 Length: 962220 (940K) [application/java-archive]
00:46:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:46:48
00:46:48 0K .......... .......... .......... .......... .......... 5% 3.49M 0s
00:46:48 50K .......... .......... .......... .......... .......... 10% 8.47M 0s
00:46:48 100K .......... .......... .......... .......... .......... 15% 4.46M 0s
00:46:48 150K .......... .......... .......... .......... .......... 21% 11.0M 0s
00:46:48 200K .......... .......... .......... .......... .......... 26% 10.9M 0s
00:46:48 250K .......... .......... .......... .......... .......... 31% 12.1M 0s
00:46:48 300K .......... .......... .......... .......... .......... 37% 19.1M 0s
00:46:48 350K .......... .......... .......... .......... .......... 42% 16.9M 0s
00:46:48 400K .......... .......... .......... .......... .......... 47% 17.9M 0s
00:46:48 450K .......... .......... .......... .......... .......... 53% 26.2M 0s
00:46:48 500K .......... .......... .......... .......... .......... 58% 13.2M 0s
00:46:48 550K .......... .......... .......... .......... .......... 63% 14.2M 0s
00:46:48 600K .......... .......... .......... .......... .......... 69% 25.0M 0s
00:46:48 650K .......... .......... .......... .......... .......... 74% 13.8M 0s
00:46:48 700K .......... .......... .......... .......... .......... 79% 40.9M 0s
00:46:48 750K .......... .......... .......... .......... .......... 85% 12.4M 0s
00:46:48 800K .......... .......... .......... .......... .......... 90% 16.7M 0s
00:46:48 850K .......... .......... .......... .......... .......... 95% 12.9M 0s
00:46:48 900K .......... .......... .......... ......... 100% 20.3M=0.08s
00:46:48
00:46:48 2026-02-13 00:46:48 (11.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:46:48
00:46:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:46:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:48 --2026-02-13 00:46:48-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:46:48 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:48 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:48 HTTP request sent, awaiting response... 200 OK
00:46:48 Length: 30963 (30K) [application/java-archive]
00:46:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:46:48
00:46:48 0K .......... .......... .......... 100% 10.6M=0.003s
00:46:48
00:46:48 2026-02-13 00:46:48 (10.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:46:48
00:46:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:46:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:48 --2026-02-13 00:46:48-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:46:48 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:48 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:48 HTTP request sent, awaiting response... 200 OK
00:46:48 Length: 241618 (236K) [application/java-archive]
00:46:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:46:48
00:46:48 0K .......... .......... .......... .......... .......... 21% 21.2M 0s
00:46:48 50K .......... .......... .......... .......... .......... 42% 3.34M 0s
00:46:48 100K .......... .......... .......... .......... .......... 63% 4.53M 0s
00:46:48 150K .......... .......... .......... .......... .......... 84% 14.2M 0s
00:46:49 200K .......... .......... .......... ..... 100% 137M=0.03s
00:46:49
00:46:49 2026-02-13 00:46:49 (7.34 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:46:49
00:46:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:46:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:49 --2026-02-13 00:46:49-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:46:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:49 HTTP request sent, awaiting response... 200 OK
00:46:49 Length: 91685 (90K) [application/java-archive]
00:46:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:46:49
00:46:49 0K .......... .......... .......... .......... .......... 55% 33.8M 0s
00:46:49 50K .......... .......... .......... ......... 100% 2.86M=0.01s
00:46:49
00:46:49 2026-02-13 00:46:49 (5.86 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:46:49
00:46:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:46:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:49 --2026-02-13 00:46:49-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:46:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:49 HTTP request sent, awaiting response... 200 OK
00:46:49 Length: 66309 (65K) [application/java-archive]
00:46:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:46:49
00:46:49 0K .......... .......... .......... .......... .......... 77% 34.4M 0s
00:46:49 50K .......... .... 100% 141M=0.002s
00:46:49
00:46:49 2026-02-13 00:46:49 (41.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:46:49
00:46:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:46:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:49 --2026-02-13 00:46:49-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:46:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:49 HTTP request sent, awaiting response... 200 OK
00:46:49 Length: 593063 (579K) [application/java-archive]
00:46:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:46:49
00:46:49 0K .......... .......... .......... .......... .......... 8% 3.57M 0s
00:46:49 50K .......... .......... .......... .......... .......... 17% 8.38M 0s
00:46:49 100K .......... .......... .......... .......... .......... 25% 4.98M 0s
00:46:49 150K .......... .......... .......... .......... .......... 34% 10.6M 0s
00:46:49 200K .......... .......... .......... .......... .......... 43% 8.61M 0s
00:46:49 250K .......... .......... .......... .......... .......... 51% 27.7M 0s
00:46:49 300K .......... .......... .......... .......... .......... 60% 17.4M 0s
00:46:49 350K .......... .......... .......... .......... .......... 69% 13.4M 0s
00:46:49 400K .......... .......... .......... .......... .......... 77% 20.2M 0s
00:46:49 450K .......... .......... .......... .......... .......... 86% 25.5M 0s
00:46:49 500K .......... .......... .......... .......... .......... 94% 13.5M 0s
00:46:49 550K .......... .......... ......... 100% 30.3M=0.06s
00:46:49
00:46:49 2026-02-13 00:46:49 (9.97 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:46:49
00:46:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:46:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:49 --2026-02-13 00:46:49-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:46:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:50 HTTP request sent, awaiting response... 200 OK
00:46:50 Length: 1688471 (1.6M) [application/java-archive]
00:46:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:46:50
00:46:50 0K .......... .......... .......... .......... .......... 3% 32.5M 0s
00:46:50 50K .......... .......... .......... .......... .......... 6% 3.55M 0s
00:46:50 100K .......... .......... .......... .......... .......... 9% 74.2M 0s
00:46:50 150K .......... .......... .......... .......... .......... 12% 3.75M 0s
00:46:50 200K .......... .......... .......... .......... .......... 15% 284M 0s
00:46:50 250K .......... .......... .......... .......... .......... 18% 57.8M 0s
00:46:50 300K .......... .......... .......... .......... .......... 21% 62.6M 0s
00:46:50 350K .......... .......... .......... .......... .......... 24% 58.7M 0s
00:46:50 400K .......... .......... .......... .......... .......... 27% 4.54M 0s
00:46:50 450K .......... .......... .......... .......... .......... 30% 129M 0s
00:46:50 500K .......... .......... .......... .......... .......... 33% 57.7M 0s
00:46:50 550K .......... .......... .......... .......... .......... 36% 58.5M 0s
00:46:50 600K .......... .......... .......... .......... .......... 39% 4.84M 0s
00:46:50 650K .......... .......... .......... .......... .......... 42% 28.1M 0s
00:46:50 700K .......... .......... .......... .......... .......... 45% 234M 0s
00:46:50 750K .......... .......... .......... .......... .......... 48% 54.7M 0s
00:46:50 800K .......... .......... .......... .......... .......... 51% 59.5M 0s
00:46:50 850K .......... .......... .......... .......... .......... 54% 4.89M 0s
00:46:50 900K .......... .......... .......... .......... .......... 57% 28.4M 0s
00:46:50 950K .......... .......... .......... .......... .......... 60% 132M 0s
00:46:50 1000K .......... .......... .......... .......... .......... 63% 59.8M 0s
00:46:50 1050K .......... .......... .......... .......... .......... 66% 57.4M 0s
00:46:50 1100K .......... .......... .......... .......... .......... 69% 4.97M 0s
00:46:50 1150K .......... .......... .......... .......... .......... 72% 24.9M 0s
00:46:50 1200K .......... .......... .......... .......... .......... 75% 235M 0s
00:46:50 1250K .......... .......... .......... .......... .......... 78% 50.9M 0s
00:46:50 1300K .......... .......... .......... .......... .......... 81% 61.0M 0s
00:46:50 1350K .......... .......... .......... .......... .......... 84% 5.07M 0s
00:46:50 1400K .......... .......... .......... .......... .......... 87% 23.7M 0s
00:46:50 1450K .......... .......... .......... .......... .......... 90% 18.2M 0s
00:46:50 1500K .......... .......... .......... .......... .......... 94% 17.5M 0s
00:46:50 1550K .......... .......... .......... .......... .......... 97% 25.0M 0s
00:46:50 1600K .......... .......... .......... .......... ........ 100% 16.8M=0.1s
00:46:50
00:46:50 2026-02-13 00:46:50 (15.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:46:50
00:46:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:46:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:50 --2026-02-13 00:46:50-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:46:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:50 HTTP request sent, awaiting response... 200 OK
00:46:50 Length: 36400 (36K) [application/java-archive]
00:46:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:46:50
00:46:50 0K .......... .......... .......... ..... 100% 34.7M=0.001s
00:46:50
00:46:50 2026-02-13 00:46:50 (34.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:46:50
00:46:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:46:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:50 --2026-02-13 00:46:50-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:46:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:50 HTTP request sent, awaiting response... 200 OK
00:46:50 Length: 79195 (77K) [application/java-archive]
00:46:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:46:50
00:46:50 0K .......... .......... .......... .......... .......... 64% 3.56M 0s
00:46:50 50K .......... .......... ....... 100% 9.16M=0.02s
00:46:50
00:46:50 2026-02-13 00:46:50 (4.54 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:46:50
00:46:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:46:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:50 --2026-02-13 00:46:50-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:46:50 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:50 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:46:51 HTTP request sent, awaiting response... 200 OK
00:46:51 Length: 277829 (271K) [application/java-archive]
00:46:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:46:51
00:46:51 0K .......... .......... .......... .......... .......... 18% 31.3M 0s
00:46:51 50K .......... .......... .......... .......... .......... 36% 3.52M 0s
00:46:51 100K .......... .......... .......... .......... .......... 55% 3.96M 0s
00:46:51 150K .......... .......... .......... .......... .......... 73% 42.6M 0s
00:46:51 200K .......... .......... .......... .......... .......... 92% 143M 0s
00:46:51 250K .......... .......... . 100% 330M=0.03s
00:46:51
00:46:51 2026-02-13 00:46:51 (9.04 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:46:51
00:46:51 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:46:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:51 --2026-02-13 00:46:51-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:46:51 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:51 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:46:51 HTTP request sent, awaiting response... 200 OK
00:46:51 Length: 579673 (566K) [application/java-archive]
00:46:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:46:51
00:46:51 0K .......... .......... .......... .......... .......... 8% 33.9M 0s
00:46:51 50K .......... .......... .......... .......... .......... 17% 3.57M 0s
00:46:51 100K .......... .......... .......... .......... .......... 26% 3.95M 0s
00:46:51 150K .......... .......... .......... .......... .......... 35% 38.3M 0s
00:46:51 200K .......... .......... .......... .......... .......... 44% 174M 0s
00:46:51 250K .......... .......... .......... .......... .......... 52% 63.2M 0s
00:46:51 300K .......... .......... .......... .......... .......... 61% 58.1M 0s
00:46:51 350K .......... .......... .......... .......... .......... 70% 4.65M 0s
00:46:51 400K .......... .......... .......... .......... .......... 79% 34.3M 0s
00:46:51 450K .......... .......... .......... .......... .......... 88% 58.9M 0s
00:46:51 500K .......... .......... .......... .......... .......... 97% 55.1M 0s
00:46:51 550K .......... ...... 100% 336M=0.04s
00:46:51
00:46:51 2026-02-13 00:46:51 (12.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:46:51
00:46:51 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:46:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:51 --2026-02-13 00:46:51-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:46:51 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:51 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:46:51 HTTP request sent, awaiting response... 200 OK
00:46:51 Length: 175836 (172K) [application/java-archive]
00:46:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:46:51
00:46:51 0K .......... .......... .......... .......... .......... 29% 34.8M 0s
00:46:51 50K .......... .......... .......... .......... .......... 58% 3.45M 0s
00:46:51 100K .......... .......... .......... .......... .......... 87% 66.0M 0s
00:46:51 150K .......... .......... . 100% 1.79M=0.03s
00:46:51
00:46:51 2026-02-13 00:46:51 (5.95 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:46:51
00:46:51 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:51 --2026-02-13 00:46:51-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:51 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:51 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:51 HTTP request sent, awaiting response... 200 OK
00:46:52 Length: 889211 (868K) [application/java-archive]
00:46:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:46:52
00:46:52 0K .......... .......... .......... .......... .......... 5% 36.3M 0s
00:46:52 50K .......... .......... .......... .......... .......... 11% 3.56M 0s
00:46:52 100K .......... .......... .......... .......... .......... 17% 3.87M 0s
00:46:52 150K .......... .......... .......... .......... .......... 23% 55.1M 0s
00:46:52 200K .......... .......... .......... .......... .......... 28% 130M 0s
00:46:52 250K .......... .......... .......... .......... .......... 34% 4.08M 0s
00:46:52 300K .......... .......... .......... .......... .......... 40% 63.0M 0s
00:46:52 350K .......... .......... .......... .......... .......... 46% 179M 0s
00:46:52 400K .......... .......... .......... .......... .......... 51% 83.8M 0s
00:46:52 450K .......... .......... .......... .......... .......... 57% 58.7M 0s
00:46:52 500K .......... .......... .......... .......... .......... 63% 66.1M 0s
00:46:52 550K .......... .......... .......... .......... .......... 69% 4.34M 0s
00:46:52 600K .......... .......... .......... .......... .......... 74% 69.8M 0s
00:46:52 650K .......... .......... .......... .......... .......... 80% 54.3M 0s
00:46:52 700K .......... .......... .......... .......... .......... 86% 248M 0s
00:46:52 750K .......... .......... .......... .......... .......... 92% 60.4M 0s
00:46:52 800K .......... .......... .......... .......... .......... 97% 4.42M 0s
00:46:52 850K .......... ........ 100% 258M=0.07s
00:46:52
00:46:52 2026-02-13 00:46:52 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:46:52
00:46:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:46:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:52 --2026-02-13 00:46:52-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:46:52 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:52 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:52 HTTP request sent, awaiting response... 200 OK
00:46:52 Length: 736051 (719K) [application/java-archive]
00:46:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:46:52
00:46:52 0K .......... .......... .......... .......... .......... 6% 34.5M 0s
00:46:52 50K .......... .......... .......... .......... .......... 13% 3.51M 0s
00:46:52 100K .......... .......... .......... .......... .......... 20% 3.86M 0s
00:46:52 150K .......... .......... .......... .......... .......... 27% 68.6M 0s
00:46:52 200K .......... .......... .......... .......... .......... 34% 51.1M 0s
00:46:52 250K .......... .......... .......... .......... .......... 41% 256M 0s
00:46:52 300K .......... .......... .......... .......... .......... 48% 57.4M 0s
00:46:52 350K .......... .......... .......... .......... .......... 55% 4.47M 0s
00:46:52 400K .......... .......... .......... .......... .......... 62% 58.3M 0s
00:46:52 450K .......... .......... .......... .......... .......... 69% 51.3M 0s
00:46:52 500K .......... .......... .......... .......... .......... 76% 64.5M 0s
00:46:52 550K .......... .......... .......... .......... .......... 83% 247M 0s
00:46:52 600K .......... .......... .......... .......... .......... 90% 4.20M 0s
00:46:52 650K .......... .......... .......... .......... .......... 97% 155M 0s
00:46:52 700K .......... ........ 100% 27.6M=0.06s
00:46:52
00:46:52 2026-02-13 00:46:52 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:46:52
00:46:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:46:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:52 --2026-02-13 00:46:52-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:46:52 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:52 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:52 HTTP request sent, awaiting response... 200 OK
00:46:52 Length: 331034 (323K) [application/java-archive]
00:46:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:46:52
00:46:52 0K .......... .......... .......... .......... .......... 15% 38.8M 0s
00:46:52 50K .......... .......... .......... .......... .......... 30% 3.55M 0s
00:46:52 100K .......... .......... .......... .......... .......... 46% 4.01M 0s
00:46:52 150K .......... .......... .......... .......... .......... 61% 33.9M 0s
00:46:52 200K .......... .......... .......... .......... .......... 77% 61.2M 0s
00:46:52 250K .......... .......... .......... .......... .......... 92% 63.3M 0s
00:46:52 300K .......... .......... ... 100% 304M=0.03s
00:46:52
00:46:52 2026-02-13 00:46:52 (10.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:46:52
00:46:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:46:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:52 --2026-02-13 00:46:52-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:46:52 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:52 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:52 HTTP request sent, awaiting response... 200 OK
00:46:52 Length: 6749842 (6.4M) [application/java-archive]
00:46:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:46:52
00:46:52 0K .......... .......... .......... .......... .......... 0% 3.36M 2s
00:46:52 50K .......... .......... .......... .......... .......... 1% 7.65M 1s
00:46:52 100K .......... .......... .......... .......... .......... 2% 4.72M 1s
00:46:52 150K .......... .......... .......... .......... .......... 3% 10.4M 1s
00:46:52 200K .......... .......... .......... .......... .......... 3% 8.94M 1s
00:46:52 250K .......... .......... .......... .......... .......... 4% 14.8M 1s
00:46:52 300K .......... .......... .......... .......... .......... 5% 18.8M 1s
00:46:52 350K .......... .......... .......... .......... .......... 6% 17.1M 1s
00:46:52 400K .......... .......... .......... .......... .......... 6% 17.5M 1s
00:46:52 450K .......... .......... .......... .......... .......... 7% 24.5M 1s
00:46:52 500K .......... .......... .......... .......... .......... 8% 12.5M 1s
00:46:52 550K .......... .......... .......... .......... .......... 9% 13.8M 1s
00:46:53 600K .......... .......... .......... .......... .......... 9% 25.0M 1s
00:46:53 650K .......... .......... .......... .......... .......... 10% 13.4M 1s
00:46:53 700K .......... .......... .......... .......... .......... 11% 17.7M 1s
00:46:53 750K .......... .......... .......... .......... .......... 12% 21.7M 1s
00:46:53 800K .......... .......... .......... .......... .......... 12% 13.6M 1s
00:46:53 850K .......... .......... .......... .......... .......... 13% 23.0M 0s
00:46:53 900K .......... .......... .......... .......... .......... 14% 14.6M 0s
00:46:53 950K .......... .......... .......... .......... .......... 15% 17.8M 0s
00:46:53 1000K .......... .......... .......... .......... .......... 15% 19.2M 0s
00:46:53 1050K .......... .......... .......... .......... .......... 16% 15.0M 0s
00:46:53 1100K .......... .......... .......... .......... .......... 17% 22.2M 0s
00:46:53 1150K .......... .......... .......... .......... .......... 18% 23.8M 0s
00:46:53 1200K .......... .......... .......... .......... .......... 18% 21.1M 0s
00:46:53 1250K .......... .......... .......... .......... .......... 19% 11.1M 0s
00:46:53 1300K .......... .......... .......... .......... .......... 20% 14.2M 0s
00:46:53 1350K .......... .......... .......... .......... .......... 21% 24.0M 0s
00:46:53 1400K .......... .......... .......... .......... .......... 21% 24.5M 0s
00:46:53 1450K .......... .......... .......... .......... .......... 22% 20.2M 0s
00:46:53 1500K .......... .......... .......... .......... .......... 23% 8.74M 0s
00:46:53 1550K .......... .......... .......... .......... .......... 24% 18.8M 0s
00:46:53 1600K .......... .......... .......... .......... .......... 25% 18.7M 0s
00:46:53 1650K .......... .......... .......... .......... .......... 25% 13.6M 0s
00:46:53 1700K .......... .......... .......... .......... .......... 26% 21.8M 0s
00:46:53 1750K .......... .......... .......... .......... .......... 27% 13.7M 0s
00:46:53 1800K .......... .......... .......... .......... .......... 28% 22.9M 0s
00:46:53 1850K .......... .......... .......... .......... .......... 28% 18.6M 0s
00:46:53 1900K .......... .......... .......... .......... .......... 29% 15.3M 0s
00:46:53 1950K .......... .......... .......... .......... .......... 30% 18.0M 0s
00:46:53 2000K .......... .......... .......... .......... .......... 31% 21.0M 0s
00:46:53 2050K .......... .......... .......... .......... .......... 31% 14.4M 0s
00:46:53 2100K .......... .......... .......... .......... .......... 32% 18.6M 0s
00:46:53 2150K .......... .......... .......... .......... .......... 33% 14.9M 0s
00:46:53 2200K .......... .......... .......... .......... .......... 34% 26.1M 0s
00:46:53 2250K .......... .......... .......... .......... .......... 34% 11.3M 0s
00:46:53 2300K .......... .......... .......... .......... .......... 35% 16.9M 0s
00:46:53 2350K .......... .......... .......... .......... .......... 36% 26.9M 0s
00:46:53 2400K .......... .......... .......... .......... .......... 37% 12.3M 0s
00:46:53 2450K .......... .......... .......... .......... .......... 37% 22.5M 0s
00:46:53 2500K .......... .......... .......... .......... .......... 38% 14.7M 0s
00:46:53 2550K .......... .......... .......... .......... .......... 39% 28.6M 0s
00:46:53 2600K .......... .......... .......... .......... .......... 40% 15.6M 0s
00:46:53 2650K .......... .......... .......... .......... .......... 40% 11.2M 0s
00:46:53 2700K .......... .......... .......... .......... .......... 41% 29.0M 0s
00:46:53 2750K .......... .......... .......... .......... .......... 42% 15.7M 0s
00:46:53 2800K .......... .......... .......... .......... .......... 43% 27.1M 0s
00:46:53 2850K .......... .......... .......... .......... .......... 43% 18.9M 0s
00:46:53 2900K .......... .......... .......... .......... .......... 44% 15.3M 0s
00:46:53 2950K .......... .......... .......... .......... .......... 45% 13.7M 0s
00:46:53 3000K .......... .......... .......... .......... .......... 46% 12.3M 0s
00:46:53 3050K .......... .......... .......... .......... .......... 47% 33.8M 0s
00:46:53 3100K .......... .......... .......... .......... .......... 47% 24.1M 0s
00:46:53 3150K .......... .......... .......... .......... .......... 48% 9.99M 0s
00:46:53 3200K .......... .......... .......... .......... .......... 49% 28.2M 0s
00:46:53 3250K .......... .......... .......... .......... .......... 50% 15.8M 0s
00:46:53 3300K .......... .......... .......... .......... .......... 50% 24.2M 0s
00:46:53 3350K .......... .......... .......... .......... .......... 51% 19.5M 0s
00:46:53 3400K .......... .......... .......... .......... .......... 52% 8.77M 0s
00:46:53 3450K .......... .......... .......... .......... .......... 53% 46.7M 0s
00:46:53 3500K .......... .......... .......... .......... .......... 53% 16.1M 0s
00:46:53 3550K .......... .......... .......... .......... .......... 54% 18.9M 0s
00:46:53 3600K .......... .......... .......... .......... .......... 55% 24.0M 0s
00:46:53 3650K .......... .......... .......... .......... .......... 56% 15.8M 0s
00:46:53 3700K .......... .......... .......... .......... .......... 56% 14.5M 0s
00:46:53 3750K .......... .......... .......... .......... .......... 57% 11.5M 0s
00:46:53 3800K .......... .......... .......... .......... .......... 58% 19.8M 0s
00:46:53 3850K .......... .......... .......... .......... .......... 59% 26.0M 0s
00:46:53 3900K .......... .......... .......... .......... .......... 59% 23.5M 0s
00:46:53 3950K .......... .......... .......... .......... .......... 60% 13.5M 0s
00:46:53 4000K .......... .......... .......... .......... .......... 61% 11.0M 0s
00:46:53 4050K .......... .......... .......... .......... .......... 62% 22.0M 0s
00:46:53 4100K .......... .......... .......... .......... .......... 62% 28.0M 0s
00:46:53 4150K .......... .......... .......... .......... .......... 63% 19.9M 0s
00:46:53 4200K .......... .......... .......... .......... .......... 64% 13.4M 0s
00:46:53 4250K .......... .......... .......... .......... .......... 65% 11.6M 0s
00:46:53 4300K .......... .......... .......... .......... .......... 65% 24.2M 0s
00:46:53 4350K .......... .......... .......... .......... .......... 66% 24.6M 0s
00:46:53 4400K .......... .......... .......... .......... .......... 67% 21.6M 0s
00:46:53 4450K .......... .......... .......... .......... .......... 68% 14.6M 0s
00:46:53 4500K .......... .......... .......... .......... .......... 69% 20.5M 0s
00:46:53 4550K .......... .......... .......... .......... .......... 69% 11.7M 0s
00:46:53 4600K .......... .......... .......... .......... .......... 70% 24.4M 0s
00:46:53 4650K .......... .......... .......... .......... .......... 71% 21.7M 0s
00:46:53 4700K .......... .......... .......... .......... .......... 72% 13.0M 0s
00:46:53 4750K .......... .......... .......... .......... .......... 72% 19.9M 0s
00:46:53 4800K .......... .......... .......... .......... .......... 73% 18.5M 0s
00:46:53 4850K .......... .......... .......... .......... .......... 74% 19.0M 0s
00:46:53 4900K .......... .......... .......... .......... .......... 75% 17.9M 0s
00:46:53 4950K .......... .......... .......... .......... .......... 75% 12.7M 0s
00:46:53 5000K .......... .......... .......... .......... .......... 76% 20.7M 0s
00:46:53 5050K .......... .......... .......... .......... .......... 77% 17.6M 0s
00:46:53 5100K .......... .......... .......... .......... .......... 78% 14.7M 0s
00:46:53 5150K .......... .......... .......... .......... .......... 78% 26.1M 0s
00:46:53 5200K .......... .......... .......... .......... .......... 79% 12.5M 0s
00:46:53 5250K .......... .......... .......... .......... .......... 80% 33.3M 0s
00:46:53 5300K .......... .......... .......... .......... .......... 81% 13.9M 0s
00:46:53 5350K .......... .......... .......... .......... .......... 81% 14.4M 0s
00:46:53 5400K .......... .......... .......... .......... .......... 82% 21.0M 0s
00:46:53 5450K .......... .......... .......... .......... .......... 83% 13.9M 0s
00:46:53 5500K .......... .......... .......... .......... .......... 84% 31.6M 0s
00:46:53 5550K .......... .......... .......... .......... .......... 84% 14.6M 0s
00:46:53 5600K .......... .......... .......... .......... .......... 85% 14.5M 0s
00:46:53 5650K .......... .......... .......... .......... .......... 86% 15.0M 0s
00:46:53 5700K .......... .......... .......... .......... .......... 87% 18.5M 0s
00:46:53 5750K .......... .......... .......... .......... .......... 87% 30.9M 0s
00:46:53 5800K .......... .......... .......... .......... .......... 88% 13.2M 0s
00:46:53 5850K .......... .......... .......... .......... .......... 89% 13.7M 0s
00:46:53 5900K .......... .......... .......... .......... .......... 90% 20.5M 0s
00:46:53 5950K .......... .......... .......... .......... .......... 91% 24.0M 0s
00:46:53 6000K .......... .......... .......... .......... .......... 91% 33.5M 0s
00:46:53 6050K .......... .......... .......... .......... .......... 92% 10.1M 0s
00:46:53 6100K .......... .......... .......... .......... .......... 93% 13.9M 0s
00:46:53 6150K .......... .......... .......... .......... .......... 94% 18.2M 0s
00:46:53 6200K .......... .......... .......... .......... .......... 94% 18.9M 0s
00:46:53 6250K .......... .......... .......... .......... .......... 95% 21.6M 0s
00:46:53 6300K .......... .......... .......... .......... .......... 96% 13.6M 0s
00:46:53 6350K .......... .......... .......... .......... .......... 97% 15.7M 0s
00:46:53 6400K .......... .......... .......... .......... .......... 97% 18.5M 0s
00:46:53 6450K .......... .......... .......... .......... .......... 98% 16.5M 0s
00:46:53 6500K .......... .......... .......... .......... .......... 99% 25.7M 0s
00:46:53 6550K .......... .......... .......... .......... . 100% 28.3M=0.4s
00:46:53
00:46:53 2026-02-13 00:46:53 (16.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:46:53
00:46:53 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:46:53 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:53 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:53 --2026-02-13 00:46:53-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:46:53 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:53 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:53 HTTP request sent, awaiting response... 200 OK
00:46:53 Length: 1732435 (1.7M) [application/java-archive]
00:46:53 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:46:53
00:46:53 0K .......... .......... .......... .......... .......... 2% 3.54M 0s
00:46:53 50K .......... .......... .......... .......... .......... 5% 8.45M 0s
00:46:53 100K .......... .......... .......... .......... .......... 8% 4.62M 0s
00:46:53 150K .......... .......... .......... .......... .......... 11% 10.4M 0s
00:46:53 200K .......... .......... .......... .......... .......... 14% 10.5M 0s
00:46:53 250K .......... .......... .......... .......... .......... 17% 11.3M 0s
00:46:53 300K .......... .......... .......... .......... .......... 20% 17.9M 0s
00:46:53 350K .......... .......... .......... .......... .......... 23% 17.8M 0s
00:46:53 400K .......... .......... .......... .......... .......... 26% 19.1M 0s
00:46:53 450K .......... .......... .......... .......... .......... 29% 26.2M 0s
00:46:53 500K .......... .......... .......... .......... .......... 32% 18.6M 0s
00:46:53 550K .......... .......... .......... .......... .......... 35% 12.4M 0s
00:46:53 600K .......... .......... .......... .......... .......... 38% 18.2M 0s
00:46:53 650K .......... .......... .......... .......... .......... 41% 14.4M 0s
00:46:53 700K .......... .......... .......... .......... .......... 44% 25.3M 0s
00:46:53 750K .......... .......... .......... .......... .......... 47% 24.8M 0s
00:46:53 800K .......... .......... .......... .......... .......... 50% 13.4M 0s
00:46:53 850K .......... .......... .......... .......... .......... 53% 17.4M 0s
00:46:53 900K .......... .......... .......... .......... .......... 56% 15.3M 0s
00:46:53 950K .......... .......... .......... .......... .......... 59% 24.4M 0s
00:46:53 1000K .......... .......... .......... .......... .......... 62% 26.5M 0s
00:46:53 1050K .......... .......... .......... .......... .......... 65% 12.5M 0s
00:46:53 1100K .......... .......... .......... .......... .......... 67% 17.6M 0s
00:46:53 1150K .......... .......... .......... .......... .......... 70% 16.0M 0s
00:46:53 1200K .......... .......... .......... .......... .......... 73% 13.2M 0s
00:46:53 1250K .......... .......... .......... .......... .......... 76% 121M 0s
00:46:53 1300K .......... .......... .......... .......... .......... 79% 14.2M 0s
00:46:53 1350K .......... .......... .......... .......... .......... 82% 14.9M 0s
00:46:53 1400K .......... .......... .......... .......... .......... 85% 42.1M 0s
00:46:53 1450K .......... .......... .......... .......... .......... 88% 8.99M 0s
00:46:53 1500K .......... .......... .......... .......... .......... 91% 17.0M 0s
00:46:53 1550K .......... .......... .......... .......... .......... 94% 22.9M 0s
00:46:53 1600K .......... .......... .......... .......... .......... 97% 20.5M 0s
00:46:53 1650K .......... .......... .......... .......... . 100% 19.9M=0.1s
00:46:53
00:46:53 2026-02-13 00:46:53 (13.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:46:53
00:46:53 + for x in *.jar
00:46:53 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:46:53 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:53 ++ deactivate nondestructive
00:46:53 ++ '[' -n '' ']'
00:46:53 ++ '[' -n '' ']'
00:46:53 ++ hash -r
00:46:53 ++ '[' -n '' ']'
00:46:53 ++ unset VIRTUAL_ENV
00:46:53 ++ unset VIRTUAL_ENV_PROMPT
00:46:53 ++ '[' '!' nondestructive = nondestructive ']'
00:46:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:53 ++ export VIRTUAL_ENV
00:46:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:53 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:53 ++ export PATH
00:46:53 ++ '[' -n '' ']'
00:46:53 ++ '[' -z '' ']'
00:46:53 ++ _OLD_VIRTUAL_PS1=
00:46:53 ++ PS1='(.venv3) '
00:46:53 ++ export PS1
00:46:53 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:53 ++ export VIRTUAL_ENV_PROMPT
00:46:53 ++ hash -r
00:46:53 + pip install -U pip
00:46:54 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:46:54 Collecting pip
00:46:54 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:46:54 Installing collected packages: pip
00:46:54 Attempting uninstall: pip
00:46:54 Found existing installation: pip 22.3.1
00:46:54 Uninstalling pip-22.3.1:
00:46:54 Successfully uninstalled pip-22.3.1
00:46:55 Successfully installed pip-26.0.1
00:46:55 WARNING: There was an error checking the latest version of pip.
00:46:55 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:46:55 Collecting zeroc-ice==3.6.5
00:46:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:46:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.2 MB/s 0:00:01
00:46:58 Installing collected packages: zeroc-ice
00:46:59 Successfully installed zeroc-ice-3.6.5
00:46:59 + pip install markdown
00:46:59 Collecting markdown
00:46:59 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:46:59 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:46:59 Installing collected packages: markdown
00:46:59 Successfully installed markdown-3.10.2
00:46:59 + pip install reportlab
00:47:00 Collecting reportlab
00:47:00 Downloading reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:47:00 Collecting pillow>=9.0.0 (from reportlab)
00:47:00 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:47:00 Collecting charset-normalizer (from reportlab)
00:47:00 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:47:00 Downloading reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:47:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 20.0 MB/s 0:00:00
00:47:00 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:47:00 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:47:00 Installing collected packages: pillow, charset-normalizer, reportlab
00:47:01
00:47:01 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:47:01 + pip install omego
00:47:02 Collecting omego
00:47:02 Using cached omego-0.7.0-py3-none-any.whl
00:47:02 Collecting future (from omego)
00:47:02 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:47:02 Collecting yaclifw>=0.1.1 (from omego)
00:47:02 Using cached yaclifw-0.2.0-py3-none-any.whl
00:47:02 Collecting six (from yaclifw>=0.1.1->omego)
00:47:02 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:47:02 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:47:02 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:47:02 Installing collected packages: six, future, yaclifw, omego
00:47:02
00:47:02 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:47:02 + pip install tables
00:47:03 Collecting tables
00:47:03 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:47:03 Collecting numpy>=1.20.0 (from tables)
00:47:03 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:47:03 Collecting numexpr>=2.6.2 (from tables)
00:47:03 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:47:03 Collecting packaging (from tables)
00:47:03 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:47:03 Collecting py-cpuinfo (from tables)
00:47:03 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:47:03 Collecting blosc2>=2.3.0 (from tables)
00:47:03 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:47:03 Collecting typing-extensions>=4.4.0 (from tables)
00:47:03 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:47:03 Collecting ndindex (from blosc2>=2.3.0->tables)
00:47:03 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:47:03 Collecting msgpack (from blosc2>=2.3.0->tables)
00:47:03 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:03 Collecting requests (from blosc2>=2.3.0->tables)
00:47:03 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:47:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:47:03 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:47:03 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:47:03 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:47:03 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:47:03 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:47:03 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:47:03 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:47:03 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:47:03 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:47:03 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:47:03 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:47:03 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:47:03 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:47:03 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:47:03 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:47:03 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:47:03 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:47:03 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:47:03 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:47:04 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:47:07
00:47:07 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:47:07 + pip install jinja2
00:47:07 Collecting jinja2
00:47:07 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:47:07 Collecting MarkupSafe>=2.0 (from jinja2)
00:47:07 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:47:07 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:47:07 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:47:07 Installing collected packages: MarkupSafe, jinja2
00:47:08
00:47:08 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:47:08 + pip install omero-py
00:47:08 Collecting omero-py
00:47:08 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:47:08 Collecting appdirs (from omero-py)
00:47:08 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:47:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:47:08 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:47:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:47:08 Collecting PyYAML (from omero-py)
00:47:08 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:47:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:47:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:47:08 Collecting portalocker (from omero-py)
00:47:08 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:47:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:47:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:47:08 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:47:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:47:08 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:47:08 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:47:08 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:47:08 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:47:08 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:47:10
00:47:10 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:47:10 + pip install pyarrow
00:47:10 Collecting pyarrow
00:47:10 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:47:10 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
00:47:11 Installing collected packages: pyarrow
00:47:12 Successfully installed pyarrow-23.0.0
00:47:12 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:47:12 Collecting omero-metadata
00:47:12 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-61_5u5au/omero-metadata_bf53abd80fb5461ba7100a274daa4a86
00:47:12 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-61_5u5au/omero-metadata_bf53abd80fb5461ba7100a274daa4a86
00:47:13 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 95cca88b89c98f8c200e2799e92dc06d1e7e6797
00:47:13 Installing build dependencies: started
00:47:14 Installing build dependencies: finished with status 'done'
00:47:14 Getting requirements to build wheel: started
00:47:14 Getting requirements to build wheel: finished with status 'done'
00:47:14 Preparing metadata (pyproject.toml): started
00:47:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:47:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:47:15 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:47:15 Collecting pandas (from omero-metadata)
00:47:15 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:47:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:47:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:47:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:47:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:47:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:47:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:47:15 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:47:15 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:47:15 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:47:15 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:47:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:47:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:47:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:47:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:47:15 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:47:15 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:47:15 Building wheels for collected packages: omero-metadata
00:47:15 Building wheel for omero-metadata (pyproject.toml): started
00:47:15 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:47:15 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=00b3ac9c0ee6e7f167d8c4a724166def995af2c084e7f7ef5be7f88805ea5661
00:47:15 Stored in directory: /tmp/pip-ephem-wheel-cache-zo0o5tsh/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:47:15 Successfully built omero-metadata
00:47:15 Installing collected packages: python-dateutil, pandas, omero-metadata
00:47:22
00:47:22 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:47:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:47:22 Collecting omero-cli-render
00:47:22 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-srsjsn8m/omero-cli-render_9d02fc4b1bc4462fa521e8be1b2b3e61
00:47:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-srsjsn8m/omero-cli-render_9d02fc4b1bc4462fa521e8be1b2b3e61
00:47:23 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:24 Switched to a new branch 'merge_ci'
00:47:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:24 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit d6dd8617eaf11408b578699a1a5b514be5336024
00:47:24 Installing build dependencies: started
00:47:24 Installing build dependencies: finished with status 'done'
00:47:24 Getting requirements to build wheel: started
00:47:25 Getting requirements to build wheel: finished with status 'done'
00:47:25 Preparing metadata (pyproject.toml): started
00:47:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:47:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:47:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:47:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:47:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:47:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:47:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:47:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:47:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:47:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:47:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:47:25 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:47:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:47:25 Building wheels for collected packages: omero-cli-render
00:47:25 Building wheel for omero-cli-render (pyproject.toml): started
00:47:25 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:47:25 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=488cde6e26f2ac799368e99bcfb602a6fb9dad1bb05deeb83423b0cf71955e21
00:47:25 Stored in directory: /tmp/pip-ephem-wheel-cache-c2ufalln/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:47:25 Successfully built omero-cli-render
00:47:25 Installing collected packages: omero-cli-render
00:47:25 Successfully installed omero-cli-render-0.8.2.dev0
00:47:25 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:47:26 Collecting omero-cli-duplicate
00:47:26 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-9f5z8ixo/omero-cli-duplicate_2effeaad776540858dcf301cb37e2346
00:47:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-9f5z8ixo/omero-cli-duplicate_2effeaad776540858dcf301cb37e2346
00:47:26 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:27 Switched to a new branch 'merge_ci'
00:47:27 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:27 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 564fc467431748cd058bdcb956553cf87425dbbd
00:47:27 Installing build dependencies: started
00:47:27 Installing build dependencies: finished with status 'done'
00:47:27 Getting requirements to build wheel: started
00:47:28 Getting requirements to build wheel: finished with status 'done'
00:47:28 Preparing metadata (pyproject.toml): started
00:47:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:28 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:47:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:47:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:47:28 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:47:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:47:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:47:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:47:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:47:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:47:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:47:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:47:28 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:47:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:47:28 Building wheels for collected packages: omero-cli-duplicate
00:47:28 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:47:28 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:47:28 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=70f9578d6fadef49c1be0545b442f48116a723190595f054f845fd569904a023
00:47:28 Stored in directory: /tmp/pip-ephem-wheel-cache-99jg75ut/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:47:28 Successfully built omero-cli-duplicate
00:47:28 Installing collected packages: omero-cli-duplicate
00:47:28 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:47:28 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:47:29 Collecting omero-cli-zarr
00:47:29 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-d5grpbq7/omero-cli-zarr_dd0611880fca4f8a817ef45d5c771e7b
00:47:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-d5grpbq7/omero-cli-zarr_dd0611880fca4f8a817ef45d5c771e7b
00:47:29 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:30 Switched to a new branch 'merge_ci'
00:47:30 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:30 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 9d2d9c400500e3461eb36e59c8725d53549a366c
00:47:30 Installing build dependencies: started
00:47:30 Installing build dependencies: finished with status 'done'
00:47:30 Getting requirements to build wheel: started
00:47:31 Getting requirements to build wheel: finished with status 'done'
00:47:31 Installing backend dependencies: started
00:47:31 Installing backend dependencies: finished with status 'done'
00:47:31 Preparing metadata (pyproject.toml): started
00:47:32 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:47:32 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:47:32 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:47:32 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:47:32 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:32 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:47:32 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:32 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:47:32 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:32 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:47:33 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:47:33 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:47:33 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:47:33 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:47:33 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:47:33 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:47:33 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:47:33 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:47:33 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (6.0.3)
00:47:33 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:47:33 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:47:33 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:47:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:47:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:47:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:47:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:47:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:47:33 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:47:33 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached aiobotocore-3.1.2-py3-none-any.whl.metadata (26 kB)
00:47:33 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:47:33 Collecting botocore<1.42.43,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached botocore-1.42.42-py3-none-any.whl.metadata (5.9 kB)
00:47:33 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:47:33 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:33 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:47:34 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:47:34 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:47:34 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:47:34 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:47:34 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:47:34 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:47:34 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:47:34 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:34 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:47:34 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.43,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:47:34 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:47:34 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:47:34 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:47:35 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:35 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:47:35 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:35 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:47:36 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:47:36 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:47:36 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:47:36 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:47:36 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:47:36 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:47:36 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:47:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:47:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:47:36 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:47:36 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:47:36 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:47:36 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:47:36 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:47:36 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:47:36 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:47:36 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:47:36 Using cached aiobotocore-3.1.2-py3-none-any.whl (87 kB)
00:47:36 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:47:36 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:47:36 Using cached botocore-1.42.42-py3-none-any.whl (14.6 MB)
00:47:36 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:47:36 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:47:36 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:47:36 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:47:36 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:47:36 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:47:36 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:47:36 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:47:36 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:47:36 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:47:36 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:47:36 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:47:36 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:47:36 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:47:36 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:47:36 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:47:36 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:47:36 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:47:36 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:47:36 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:47:36 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:47:36 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:47:36 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:47:36 Building wheels for collected packages: omero-cli-zarr
00:47:36 Building wheel for omero-cli-zarr (pyproject.toml): started
00:47:37 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:47:37 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+g9d2d9c4-py3-none-any.whl size=38160 sha256=0b4cc8f910ccc423bde6a5953a5e8dd743dbd4610d7c371e9be300771ada6476
00:47:37 Stored in directory: /tmp/pip-ephem-wheel-cache-0hbjxstg/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:47:37 Successfully built omero-cli-zarr
00:47:37 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:46
00:47:46 Successfully installed aiobotocore-3.1.2 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.42 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+g9d2d9c4 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:47:47 + pip install omero-certificates
00:47:47 Collecting omero-certificates
00:47:47 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:47:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:47:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:47:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:47:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:47:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:47:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:47:47 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:47 Installing collected packages: omero-certificates
00:47:47 Successfully installed omero-certificates-0.4.0
00:47:47 + for x in *.tar.gz
00:47:47 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:48 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:48 Installing build dependencies: started
00:47:48 Installing build dependencies: finished with status 'done'
00:47:48 Getting requirements to build wheel: started
00:47:49 Getting requirements to build wheel: finished with status 'done'
00:47:49 Preparing metadata (pyproject.toml): started
00:47:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:49 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:47:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:47:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:47:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:47:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:47:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:47:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:47:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:47:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:47:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:47:49 Building wheels for collected packages: omero-dropbox
00:47:49 Building wheel for omero-dropbox (pyproject.toml): started
00:47:49 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:49 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=017f90103964bbffed25ae370d564bf53dc1f630c45a03725f19f93f0fbb9cb5
00:47:49 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:47:49 Successfully built omero-dropbox
00:47:49 Installing collected packages: omero-dropbox
00:47:49 Successfully installed omero-dropbox-5.7.1.dev0
00:47:49 + for x in *.tar.gz
00:47:49 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:47:50 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:47:50 Installing build dependencies: started
00:47:52 Installing build dependencies: finished with status 'done'
00:47:52 Getting requirements to build wheel: started
00:47:52 Getting requirements to build wheel: finished with status 'done'
00:47:52 Preparing metadata (pyproject.toml): started
00:47:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:53 Building wheels for collected packages: omero_marshal
00:47:53 Building wheel for omero_marshal (pyproject.toml): started
00:47:53 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:53 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=a378274f65f6f03fa4a739ae96d64e6205b5931c31109f5a22475e948394788a
00:47:53 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:47:53 Successfully built omero_marshal
00:47:53 Installing collected packages: omero_marshal
00:47:53 Successfully installed omero_marshal-0.9.2.dev0
00:47:53 + for x in *.tar.gz
00:47:53 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:47:54 Processing ./omero_py-5.22.1.dev0.tar.gz
00:47:54 Installing build dependencies: started
00:47:55 Installing build dependencies: finished with status 'done'
00:47:55 Getting requirements to build wheel: started
00:47:55 Getting requirements to build wheel: finished with status 'done'
00:47:55 Preparing metadata (pyproject.toml): started
00:47:55 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:47:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:47:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:47:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:47:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:47:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:47:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:47:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:47:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:47:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:47:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:47:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:47:55 Building wheels for collected packages: omero-py
00:47:55 Building wheel for omero-py (pyproject.toml): started
00:47:56 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:56 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786544 sha256=27fe0923a5281f7f969c8905956e45e06802373738bbd01386a58a3a7038ccb4
00:47:56 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:47:56 Successfully built omero-py
00:47:56 Installing collected packages: omero-py
00:47:56 Attempting uninstall: omero-py
00:47:56 Found existing installation: omero-py 5.22.0
00:47:56 Uninstalling omero-py-5.22.0:
00:47:57 Successfully uninstalled omero-py-5.22.0
00:47:59 Successfully installed omero-py-5.22.1.dev0
00:47:59 + for x in *.tar.gz
00:47:59 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:47:59 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:47:59 Installing build dependencies: started
00:48:00 Installing build dependencies: finished with status 'done'
00:48:00 Getting requirements to build wheel: started
00:48:00 Getting requirements to build wheel: finished with status 'done'
00:48:00 Preparing metadata (pyproject.toml): started
00:48:00 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:00 Building wheels for collected packages: omero-scripts
00:48:00 Building wheel for omero-scripts (pyproject.toml): started
00:48:01 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:48:01 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=8f44eb010f8ee7c2c43f80810f8b3ba6a07af147af77ab83bf5e64d02e1f786d
00:48:01 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:48:01 Successfully built omero-scripts
00:48:01 Installing collected packages: omero-scripts
00:48:01 Successfully installed omero-scripts-5.10.1.dev0
00:48:01 + for x in *.tar.gz
00:48:01 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:48:01 Processing ./omero_web-5.30.2.dev0.tar.gz
00:48:01 Installing build dependencies: started
00:48:02 Installing build dependencies: finished with status 'done'
00:48:02 Getting requirements to build wheel: started
00:48:03 Getting requirements to build wheel: finished with status 'done'
00:48:03 Preparing metadata (pyproject.toml): started
00:48:03 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:03 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.1.dev0)
00:48:03 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:48:03 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:48:03 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:48:03 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:48:03 Collecting django-pipeline>=4.1.0 (from omero-web==5.30.2.dev0)
00:48:03 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:48:03 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:48:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:48:03 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:48:03 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:48:03 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:48:03 Using cached gunicorn-25.0.3-py3-none-any.whl.metadata (5.5 kB)
00:48:03 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:48:03 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.1)
00:48:03 Collecting pytz (from omero-web==5.30.2.dev0)
00:48:03 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:48:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:48:03 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:48:03 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:48:03 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:48:03 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:48:03 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:48:03 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:48:03 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:48:03 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0) (65.5.1)
00:48:03 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0)
00:48:03 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:48:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:48:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:48:03 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
00:48:03 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:48:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:48:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:48:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:48:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:48:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:48:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:48:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:48:03 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:48:03 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:48:03 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:48:03 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:48:03 Using cached gunicorn-25.0.3-py3-none-any.whl (171 kB)
00:48:03 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:48:03 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:48:03 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:48:03 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:48:03 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:48:03 Building wheels for collected packages: omero-web
00:48:03 Building wheel for omero-web (pyproject.toml): started
00:48:05 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:48:05 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819286 sha256=4b1871fc3179c9e30f29feec800622ffaf6f5969ae503d729fefedddf92b736e
00:48:05 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:48:05 Successfully built omero-web
00:48:05 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:48:09
00:48:09 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.3 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:48:09 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:48:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:48:09 --2026-02-13 00:48:09-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:48:09 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ...
00:48:09 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:48:09 HTTP request sent, awaiting response... 200 OK
00:48:09 Length: 137709 (134K) [text/plain]
00:48:09 Saving to: ‘Figure_To_Pdf.py’
00:48:09
00:48:09 0K .......... .......... .......... .......... .......... 37% 3.92M 0s
00:48:09 50K .......... .......... .......... .......... .......... 74% 12.9M 0s
00:48:09 100K .......... .......... .......... .... 100% 6.68M=0.02s
00:48:09
00:48:09 2026-02-13 00:48:09 (6.18 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:48:09
00:48:09 + chmod 755 Figure_To_Pdf.py
00:48:09 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:48:09 + omero config set omero.db.name OMERO-server
00:48:11 + omero config set omero.db.host pg
00:48:13 + omero config set omero.db.user postgres
00:48:15 + omero config set omero.data.dir /home/omero/omero-server-data
00:48:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:48:19 + omero config set omero.db.poolsize 25
00:48:21 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:48:23 + omero config set omero.security.trustStorePassword changeit
00:48:25 + omero config set omero.mail.config true
00:48:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:48:29 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:48:31 + omero certificates
00:48:33 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:48:33 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:48:33 + '[' false = true ']'
00:48:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:48:33 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:48:33 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG dbcommand => upgrade
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG dbhost => localhost
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG dbname => OMERO-server
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG dbpass => omero
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG dbuser => omero
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG rootpass => omero
00:48:33 2026-02-13 00:48:33,547 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:48:33 2026-02-13 00:48:33,547 [omego.extern] INFO Executing : omero version
00:48:35 OMERO.py version:
00:48:35 OMERO.server version:
00:48:35 5.6.3-593-37da7fb5f6-ice36-b52
00:48:35 5.22.1.dev0
00:48:35 2026-02-13 00:48:35,605 [omego.extern] INFO Completed [2.057 s]
00:48:35 2026-02-13 00:48:35,605 [omego.extern] DEBUG Using omero CLI from omero
00:48:35 2026-02-13 00:48:35,605 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:48:35 2026-02-13 00:48:35,605 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:35 2026-02-13 00:48:35,605 [omego.extern] INFO Executing : omero config get --show-password
00:48:37 2026-02-13 00:48:37,532 [omego.extern] INFO Completed [1.927 s]
00:48:37 2026-02-13 00:48:37,532 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:37 2026-02-13 00:48:37,533 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:48:37 2026-02-13 00:48:37,538 [omego.extern] INFO Completed [0.006 s]
00:48:37 2026-02-13 00:48:37,538 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:48:37 2026-02-13 00:48:37,538 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:48:37
00:48:37 2026-02-13 00:48:37,538 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:37 2026-02-13 00:48:37,538 [omego.extern] INFO Executing : omero config get --show-password
00:48:39 2026-02-13 00:48:39,483 [omego.extern] INFO Completed [1.944 s]
00:48:39 2026-02-13 00:48:39,483 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:39 2026-02-13 00:48:39,483 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:48:39 2026-02-13 00:48:39,492 [omego.extern] INFO Completed [0.009 s]
00:48:39 2026-02-13 00:48:39,492 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
00:48:39 2026-02-13 00:48:39,492 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:39 2026-02-13 00:48:39,492 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:39 2026-02-13 00:48:39,492 [omego.extern] INFO Executing : omero config get --show-password
00:48:41 2026-02-13 00:48:41,495 [omego.extern] INFO Completed [2.003 s]
00:48:41 2026-02-13 00:48:41,496 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:41 2026-02-13 00:48:41,496 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:41 2026-02-13 00:48:41,506 [omego.extern] INFO Completed [0.010 s]
00:48:41 2026-02-13 00:48:41,506 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:41 2026-02-13 00:48:41,506 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:41 2026-02-13 00:48:41,507 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:41 + export LANG=en_US.UTF-8
00:48:41 + LANG=en_US.UTF-8
00:48:41 + export LANGUAGE=en_US:en
00:48:41 + LANGUAGE=en_US:en
00:48:41 + export LC_ALL=en_US.UTF-8
00:48:41 + LC_ALL=en_US.UTF-8
00:48:41 + BUILD_ID=DONT_KILL_ME
00:48:41 + omero admin start
00:48:46 No descriptor given. Using etc/grid/default.xml
00:48:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:48:53 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:48:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:48:53 Waiting on startup. Use CTRL-C to exit
00:48:54 + omero admin waitup
00:48:56 Waiting on startup. Use CTRL-C to exit
00:48:56 + omero admin diagnostics
00:48:58
00:48:58 ================================================================================
00:48:58 OMERO Diagnostics (admin)
00:48:58 ================================================================================
00:48:58
00:48:58 Commands: java -version 17.0.17 (/usr/bin/java)
00:48:58 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:48:58 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:48:58 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:48:58 Commands: psql --version 16.11 (/usr/bin/psql)
00:48:58 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:48:58
00:48:58 Component: OMERO.py 5.22.1.dev0
00:48:58 Component: OMERO.server 5.6.3-593-37da7fb5f6-ice36-b52
00:48:58
00:48:58 Server: icegridnode running
00:48:58 Server: Blitz-0 active (pid = 40435, enabled)
00:48:58 Server: Indexer-0 activating (enabled)
00:48:58 Server: OMERO.Glacier2 active (pid = 40469, enabled)
00:48:58 Server: OMERO.IceStorm active (pid = 40496, enabled)
00:48:58 Server: Processor-0 active (pid = 40485, enabled)
00:48:58 Server: Tables-0 active (pid = 40497, enabled)
00:48:58
00:48:58 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:48:58 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:48:58 Log files: DropBox.log n/a
00:48:58 Log files: FileServer.log n/a
00:48:58 Log files: Indexer-0.log 238 B
00:48:58 Log files: MonitorServer.log n/a
00:48:58 Log files: Processor-0.log 735 B
00:48:58 Log files: Tables-0.log 961 B
00:48:58 Log files: TestDropBox.log n/a
00:48:58 Log files: master.err empty
00:48:58 Log files: master.out 30.1 KB
00:48:58 Log files: Total size 0.06 MB
00:48:58
00:48:58
00:48:58 Environment:OMERO_HOME=(unset)
00:48:58 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:58 Environment:OMERO_NODE=(unset)
00:48:58 Environment:OMERO_MASTER=(unset)
00:48:58 Environment:OMERO_USERDIR=(unset)
00:48:58 Environment:OMERO_TMPDIR=(unset)
00:48:58 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:58 Environment:PYTHONPATH=(unset)
00:48:58 Environment:ICE_HOME=/opt/ice-3.6.5
00:48:58 Environment:LD_LIBRARY_PATH=(unset)
00:48:58 Environment:DYLD_LIBRARY_PATH=(unset)
00:48:58
00:48:58 OMERO SSL port:4064
00:48:58 OMERO TCP port:4063
00:48:58 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:48:58 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:48:58
00:48:58 JVM settings: Blitz-${index} -Xmx7200m
00:48:58 JVM settings: Indexer-${index} -Xmx4800m
00:48:58 JVM settings: PixelData-${index} -Xmx7200m
00:48:58 JVM settings: Repository-${index} -Xmx4800m
00:48:58
00:48:58 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 13 February 2026 620e79fc8c29920b62b17bdaa3c5bbca6274bf50
00:48:58 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 13 February 2026 620e79fc8c29920b62b17bdaa3c5bbca6274bf50
00:48:58 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 13 February 2026 620e79fc8c29920b62b17bdaa3c5bbca6274bf50
00:48:58 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 13 February 2026 6b8372f4aef0c43ab06aff16411c136086cbfb7e
00:48:58 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:48:58 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:48:58 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 02b114629436bdeb421a636a08cb7178f0f35a2b
00:48:58 + deactivate
00:48:58 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:58 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:58 + export PATH
00:48:58 + unset _OLD_VIRTUAL_PATH
00:48:58 + '[' -n '' ']'
00:48:58 + hash -r
00:48:58 + '[' -n '' ']'
00:48:58 + unset VIRTUAL_ENV
00:48:58 + unset VIRTUAL_ENV_PROMPT
00:48:58 + '[' '!' '' = nondestructive ']'
00:48:58 + unset -f deactivate
00:48:58 Finished: SUCCESS
