23:48:04 Started by upstream project "Trigger" build number 90
23:48:04 originally caused by:
23:48:04 Started by timer
23:48:04 Running as SYSTEM
23:48:04 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
23:48:04 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16452208400238573784.sh
23:48:04 + source /home/settings.env
23:48:04 ++ OMERO_DB_HOST=pg
23:48:04 ++ OMERO_DB_USER=postgres
23:48:04 ++ OMERO_DB_PASS=
23:48:04 ++ OMERO_ROOT_PASS=omero
23:48:04 ++ OMERO_DATA_DIR=/OMERO
23:48:04 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:48:04 + OMERO_DB_NAME=OMERO-server
23:48:04 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
23:48:04 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:48:04 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:48:04 + OMERO_DATA_DIR=/home/omero/omero-server-data
23:48:04 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
23:48:04 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
23:48:05 ++ deactivate nondestructive
23:48:05 ++ '[' -n '' ']'
23:48:05 ++ '[' -n '' ']'
23:48:05 ++ hash -r
23:48:05 ++ '[' -n '' ']'
23:48:05 ++ unset VIRTUAL_ENV
23:48:05 ++ unset VIRTUAL_ENV_PROMPT
23:48:05 ++ '[' '!' nondestructive = nondestructive ']'
23:48:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
23:48:05 ++ export VIRTUAL_ENV
23:48:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:05 ++ export PATH
23:48:05 ++ '[' -n '' ']'
23:48:05 ++ '[' -z '' ']'
23:48:05 ++ _OLD_VIRTUAL_PS1=
23:48:05 ++ PS1='(.venv3) '
23:48:05 ++ export PS1
23:48:05 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
23:48:05 ++ export VIRTUAL_ENV_PROMPT
23:48:05 ++ hash -r
23:48:05 + omero admin stop
23:48:30 Waiting on shutdown. Use CTRL-C to exit
23:48:30 .+ sleep 5
23:48:46 + deactivate
23:48:46 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
23:48:46 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:46 + export PATH
23:48:46 + unset _OLD_VIRTUAL_PATH
23:48:46 + '[' -n '' ']'
23:48:46 + hash -r
23:48:46 + '[' -n '' ']'
23:48:46 + unset VIRTUAL_ENV
23:48:46 + unset VIRTUAL_ENV_PROMPT
23:48:46 + '[' '!' '' = nondestructive ']'
23:48:46 + unset -f deactivate
23:48:46 + rm -rf /home/omero/workspace/OMERO-server/.venv3
23:51:35 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
23:51:56 + '[' false = true ']'
23:51:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
23:51:56 Skipping PURGE_DATA:CleanDbAndRepo
23:51:56 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
23:52:05 Copied 1 artifact from "OMERO-build" build number 73
23:52:05 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 64
23:52:06 Copied 2 artifacts from "OMERO-build-build" build number 75
23:52:06 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13341167533206169955.sh
23:52:06 + source /home/settings.env
23:52:06 ++ OMERO_DB_HOST=pg
23:52:06 ++ OMERO_DB_USER=postgres
23:52:06 ++ OMERO_DB_PASS=
23:52:06 ++ OMERO_ROOT_PASS=omero
23:52:06 ++ OMERO_DATA_DIR=/OMERO
23:52:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:52:06 + OMERO_DB_NAME=OMERO-server
23:52:06 + OMERO_DATA_DIR=/home/omero/omero-server-data
23:52:06 + mkdir -p /home/omero/omero-server-data
23:52:06 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
23:52:06 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:52:06 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:52:06 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
23:52:06 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
23:52:06 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
23:52:06 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
23:52:06 ++ ls OMERO.server-5.6.3-677-ab3492c05b-ice36-b73.zip
23:52:06 + ZIP=OMERO.server-5.6.3-677-ab3492c05b-ice36-b73.zip
23:52:06 + '[' '!' -z '' ']'
23:52:06 + DIST=OMERO.server-5.6.3-677-ab3492c05b-ice36-b73
23:52:06 + unzip OMERO.server-5.6.3-677-ab3492c05b-ice36-b73.zip
23:52:06 Archive: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73.zip
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/blitz/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/grid/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/profiles/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/error/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/grid/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/janelia/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/matplotlib/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/ncsa_paledit/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/seaborn/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/luts/wcif/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/analysis_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/annotation_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/export_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/figure_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/import_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/scripts/omero/util_scripts/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/misc/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__1/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__10/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__11/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__2/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__3/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__4/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__5/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__6/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__7/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__8/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__9/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__4/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__5/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__6/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__7/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.1__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.2__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.2__0/t/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.3__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.4__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.0__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.1__1/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.2__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__1/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__2/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__3/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/var/
23:52:06 creating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/var/tmp/
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/LICENSE.txt
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/backup.cfg
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/blitz/mail-senders.example
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/blitz/mail-server.example
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/build.properties
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/env.bat
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/env.sh
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/hibernate.properties
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/ice.config
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/logback-cli.xml
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/logback-indexing-cli.xml
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/logback-indexing.xml
23:52:06 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/logback.xml
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/mime.types
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/node1.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/node2.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/omero.properties
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/profiles/psql
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/rollover.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/Windows.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/error/maintainance.html
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/grid/README
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/grid/default.xml
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/grid/templates.xml
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/grid/windefault.xml
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/ice.config
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/internal.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/master.cfg
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/templates/robot.template
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/etc/testdropbox.config
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/history.rst
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/OMEZarrReader.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/accessors-smart.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/activation.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aggdesigner-algorithm.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aircompressor.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/annotations.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/antlr.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aopalliance.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/apache-client.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/apiguardian-api.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/arns.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/asm.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/auth.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/avatica-core.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/avatica-metrics.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-core.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-java-sdk-core.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-java-sdk-kms.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-java-sdk-s3.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-query-protocol.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/aws-xml-protocol.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/base.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-anim.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-awt-util.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-bridge.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-codec.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-constants.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-css.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-dom.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-ext.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-gvt.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-i18n.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-parser.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-script.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-shared-resources.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-svg-dom.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-svggen.jar
23:52:07 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/client/batik-transcoder.jar
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23:52:26 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/spring-security-core.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/spring-security-ldap.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/spring-tx.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/sqlite-jdbc.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/subethasmtp.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/third-party-jackson-core.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/turbojpeg.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/udunits.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/url-connection-client.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/utils-lite.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/utils.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/uzaygezen-core.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xalan.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xercesImpl.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xml-apis-ext.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xml-apis.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xmlgraphics-commons.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xmpcore.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/xpp3.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/zarr-java.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/lib/server/zstd-jni.jar
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/README
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/agpl.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/antlr.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/apache-v1.1.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/apache-v2.0.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/asm.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/bouncy_castle_license.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/bsd.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/cddl-v1.0.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/cpl-v10.html
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/crystalclear.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/django.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/dom4j.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/epl-v1.0.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/fbsd.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/freemarker.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/gpl-v2.0.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/gpl.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/gtest.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/iconsweets_license.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/jamon.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/jmock.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/jquery.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/jtidy.txt
23:52:27 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/lgpl-3.0.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/lgpl-v2.0.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/lgpl-v2.1.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/lgpl-v3.0.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/lgpl.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/matplotlib.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/mit.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/mpl-v1_0.htm
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/npl-1_1.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/path.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/pil.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/postgresql.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/psf-v2.0.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/psf-v2.5.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/scons.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/slf4j.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/tablelayout.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/which.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/zlib-libpng.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/share/licenses/zpl-v2.1.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/README.txt
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/misc/Makefile
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/misc/current.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/misc/enums.py
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__1/OMERO3__7.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__10/OMERO3A__9.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__11/OMERO3A__10.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__11/OMERO3A__5.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__2/OMERO3A__1.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__3/OMERO3A__2.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__3/OMERO3__5.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__4/OMERO3A__3.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__4/OMERO3__5.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__5/OMERO3A__4.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__6/OMERO3A__5.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__7/OMERO3A__6.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__8/OMERO3A__6.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3A__9/OMERO3A__8.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__4/OMERO3__1.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__5/OMERO3__4.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__6/OMERO3__5.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO3__7/OMERO3__6.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.1__0/OMERO4__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO4__0/OMERO3A__11.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/psql-footer.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/psql-header.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/schema.sql
23:52:28 inflating: OMERO.server-5.6.3-677-ab3492c05b-ice36-b73/sql/psql/OMERO5.4__0/views.sql
23:52:29 + rm -f OMERO.server-5.6.3-677-ab3492c05b-ice36-b73.zip
23:52:29 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-677-ab3492c05b-ice36-b73 /home/omero/workspace/OMERO-server/OMERO.server
23:52:29 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
23:52:29 ++ deactivate nondestructive
23:52:29 ++ '[' -n '' ']'
23:52:29 ++ '[' -n '' ']'
23:52:29 ++ hash -r
23:52:29 ++ '[' -n '' ']'
23:52:29 ++ unset VIRTUAL_ENV
23:52:29 ++ unset VIRTUAL_ENV_PROMPT
23:52:29 ++ '[' '!' nondestructive = nondestructive ']'
23:52:29 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
23:52:29 ++ export VIRTUAL_ENV
23:52:29 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:52:29 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:52:29 ++ export PATH
23:52:29 ++ '[' -n '' ']'
23:52:29 ++ '[' -z '' ']'
23:52:29 ++ _OLD_VIRTUAL_PS1=
23:52:29 ++ PS1='(.venv3) '
23:52:29 ++ export PS1
23:52:29 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
23:52:29 ++ export VIRTUAL_ENV_PROMPT
23:52:29 ++ hash -r
23:52:29 + pip install -U pip
23:52:30 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
23:52:30 Collecting pip
23:52:30 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
23:52:30 Installing collected packages: pip
23:52:30 Attempting uninstall: pip
23:52:30 Found existing installation: pip 22.3.1
23:52:31 Uninstalling pip-22.3.1:
23:52:31 Successfully uninstalled pip-22.3.1
23:52:45 Successfully installed pip-26.2.1
23:52:45 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
23:52:46 Collecting zeroc-ice==3.6.5
23:52:46 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:52:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.5 MB/s 0:00:02
23:52:49 Installing collected packages: zeroc-ice
23:52:52 Successfully installed zeroc-ice-3.6.5
23:52:52 + pip install markdown
23:52:53 Collecting markdown
23:52:53 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
23:52:53 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
23:52:53 Installing collected packages: markdown
23:52:54 Successfully installed markdown-3.10.3
23:52:54 + pip install reportlab
23:52:55 Collecting reportlab
23:52:55 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB)
23:52:55 Collecting pillow>=9.0.0 (from reportlab)
23:52:56 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
23:52:56 Collecting charset-normalizer (from reportlab)
23:52:56 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB)
23:52:56 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB)
23:52:56 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:52:56 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:52:56 Installing collected packages: pillow, charset-normalizer, reportlab
23:53:05
23:53:05 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1
23:53:05 + pip install pyarrow
23:53:06 Collecting pyarrow
23:53:06 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
23:53:06 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB)
23:53:07 Installing collected packages: pyarrow
23:53:18 Successfully installed pyarrow-25.0.1
23:53:18 + pip install omego
23:53:19 Collecting omego
23:53:19 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
23:53:19 Collecting future (from omego)
23:53:19 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
23:53:19 Collecting yaclifw>=0.1.1 (from omego)
23:53:19 Using cached yaclifw-0.2.0-py3-none-any.whl
23:53:19 Collecting six (from yaclifw>=0.1.1->omego)
23:53:19 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
23:53:19 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
23:53:19 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:53:20 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
23:53:20 Installing collected packages: six, future, yaclifw, omego
23:53:25
23:53:25 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
23:53:25 + pip install tables
23:53:26 Collecting tables
23:53:26 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
23:53:26 Collecting numpy>=1.20.0 (from tables)
23:53:26 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
23:53:27 Collecting numexpr>=2.6.2 (from tables)
23:53:27 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
23:53:27 Collecting packaging (from tables)
23:53:27 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
23:53:27 Collecting py-cpuinfo (from tables)
23:53:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
23:53:27 Collecting blosc2>=2.3.0 (from tables)
23:53:27 Using cached blosc2-4.12.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
23:53:27 Collecting ndindex (from blosc2>=2.3.0->tables)
23:53:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
23:53:28 Collecting msgpack (from blosc2>=2.3.0->tables)
23:53:28 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
23:53:28 Collecting pydantic (from blosc2>=2.3.0->tables)
23:53:28 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB)
23:53:28 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
23:53:28 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
23:53:28 Collecting rich (from blosc2>=2.3.0->tables)
23:53:28 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
23:53:28 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
23:53:28 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
23:53:28 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB)
23:53:29 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
23:53:29 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
23:53:29 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB)
23:53:29 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
23:53:29 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
23:53:29 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
23:53:29 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
23:53:29 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
23:53:30 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
23:53:30 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
23:53:30 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
23:53:30 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
23:53:30 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables)
23:53:31 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
23:53:31 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
23:53:31 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB)
23:53:31 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
23:53:31 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
23:53:31 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
23:53:31 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
23:53:31 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
23:53:31 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
23:53:31 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
23:53:31 Using cached blosc2-4.12.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
23:53:31 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
23:53:31 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:53:31 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
23:53:31 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
23:53:32 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
23:53:32 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
23:53:32 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
23:53:32 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
23:53:32 Using cached anyio-4.15.1-py3-none-any.whl (132 kB)
23:53:32 Using cached idna-3.19-py3-none-any.whl (68 kB)
23:53:32 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
23:53:32 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:53:32 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB)
23:53:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
23:53:32 Using cached packaging-26.3-py3-none-any.whl (129 kB)
23:53:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
23:53:32 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB)
23:53:32 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
23:53:33 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
23:53:33 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB)
23:53:33 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
23:53:33 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB)
23:53:33 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
23:53:33 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
23:53:33 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
23:53:33 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
23:54:17
23:54:17 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.12.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0
23:54:17 + pip install jinja2
23:54:18 Collecting jinja2
23:54:18 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
23:54:18 Collecting MarkupSafe>=2.0 (from jinja2)
23:54:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
23:54:18 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
23:54:18 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
23:54:18 Installing collected packages: MarkupSafe, jinja2
23:54:19
23:54:19 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
23:54:19 + pip install omero-py
23:54:20 Collecting omero-py
23:54:20 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
23:54:20 Collecting appdirs (from omero-py)
23:54:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
23:54:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
23:54:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
23:54:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
23:54:21 Collecting PyYAML (from omero-py)
23:54:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
23:54:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:54:21 Collecting requests (from omero-py)
23:54:21 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
23:54:21 Collecting portalocker (from omero-py)
23:54:21 Using cached portalocker-4.3.0-py3-none-any.whl.metadata (11 kB)
23:54:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1)
23:54:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19)
23:54:21 Collecting urllib3<3,>=1.26 (from requests->omero-py)
23:54:21 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
23:54:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
23:54:21 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:54:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:54:21 Using cached portalocker-4.3.0-py3-none-any.whl (129 kB)
23:54:21 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:54:21 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:54:21 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
23:54:22 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
23:54:38
23:54:38 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 urllib3-2.7.0
23:54:38 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
23:54:38 Collecting omero-metadata
23:54:38 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-eo8c047s/omero-metadata_ba0a10f7c44244469768b748d85a8eca
23:54:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-eo8c047s/omero-metadata_ba0a10f7c44244469768b748d85a8eca
23:54:40 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 7d60376997a13eeb3bf9128ff050eea19f7f6aa5
23:54:40 Installing build dependencies: started
23:54:41 Installing build dependencies: finished with status 'done'
23:54:41 Getting requirements to build wheel: started
23:54:41 Getting requirements to build wheel: finished with status 'done'
23:54:41 Preparing metadata (pyproject.toml): started
23:54:42 Preparing metadata (pyproject.toml): finished with status 'done'
23:54:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
23:54:42 Collecting pandas<3,>=2 (from omero-metadata)
23:54:42 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
23:54:42 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
23:54:42 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
23:54:42 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
23:54:42 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
23:54:42 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
23:54:42 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
23:54:42 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB)
23:54:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
23:54:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
23:54:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
23:54:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
23:54:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
23:54:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
23:54:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.0)
23:54:42 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0)
23:54:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1)
23:54:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19)
23:54:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
23:54:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
23:54:43 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
23:54:43 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
23:54:43 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
23:54:43 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB)
23:54:43 Building wheels for collected packages: omero-metadata
23:54:43 Building wheel for omero-metadata (pyproject.toml): started
23:54:43 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
23:54:43 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=bfc1a7db146a1717eaacf80c80cc2c7e73471652dff145838edab5f300758920
23:54:43 Stored in directory: /tmp/pip-ephem-wheel-cache-txks35tg/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
23:54:43 Successfully built omero-metadata
23:54:44 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
23:55:27
23:55:27 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3
23:55:27 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
23:55:28 Collecting omero-cli-render
23:55:28 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-6ctfxiyn/omero-cli-render_29f4a7553fd1450b95f0c1336469ddae
23:55:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-6ctfxiyn/omero-cli-render_29f4a7553fd1450b95f0c1336469ddae
23:55:29 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:30 Switched to a new branch 'merge_ci'
23:55:30 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:30 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0cd430cad4191013874c4b8dc7ac9d5332ec1a6a
23:55:30 Installing build dependencies: started
23:55:31 Installing build dependencies: finished with status 'done'
23:55:31 Getting requirements to build wheel: started
23:55:31 Getting requirements to build wheel: finished with status 'done'
23:55:31 Preparing metadata (pyproject.toml): started
23:55:31 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
23:55:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
23:55:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
23:55:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
23:55:31 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
23:55:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
23:55:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
23:55:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
23:55:31 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.0)
23:55:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1)
23:55:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19)
23:55:31 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
23:55:31 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
23:55:31 Building wheels for collected packages: omero-cli-render
23:55:31 Building wheel for omero-cli-render (pyproject.toml): started
23:55:32 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
23:55:32 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=ad60c4353570e878dad263e0e918d76252ad55fd4bf145b759da2914a8829439
23:55:32 Stored in directory: /tmp/pip-ephem-wheel-cache-ffln5lec/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
23:55:32 Successfully built omero-cli-render
23:55:32 Installing collected packages: omero-cli-render
23:55:32 Successfully installed omero-cli-render-0.8.2.dev0
23:55:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
23:55:33 Collecting omero-cli-duplicate
23:55:33 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-519yw46c/omero-cli-duplicate_80eca62631b845b3aa05d1b7480a8779
23:55:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-519yw46c/omero-cli-duplicate_80eca62631b845b3aa05d1b7480a8779
23:55:34 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:35 Switched to a new branch 'merge_ci'
23:55:35 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:35 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit eb2b257df5b435a5bd7a3b169cfe4e60968c797b
23:55:35 Installing build dependencies: started
23:55:36 Installing build dependencies: finished with status 'done'
23:55:36 Getting requirements to build wheel: started
23:55:36 Getting requirements to build wheel: finished with status 'done'
23:55:36 Preparing metadata (pyproject.toml): started
23:55:37 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:37 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
23:55:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
23:55:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
23:55:37 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
23:55:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
23:55:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
23:55:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
23:55:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
23:55:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.0)
23:55:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1)
23:55:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19)
23:55:37 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
23:55:37 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
23:55:37 Building wheels for collected packages: omero-cli-duplicate
23:55:37 Building wheel for omero-cli-duplicate (pyproject.toml): started
23:55:37 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
23:55:37 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=1501eb3264c2b38d598cf06dc61ff98a68205885ddae4138c74f9291444916ec
23:55:37 Stored in directory: /tmp/pip-ephem-wheel-cache-k_kdkt8n/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
23:55:37 Successfully built omero-cli-duplicate
23:55:37 Installing collected packages: omero-cli-duplicate
23:55:37 Successfully installed omero-cli-duplicate-0.4.1.dev0
23:55:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
23:55:38 Collecting omero-cli-zarr
23:55:38 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-uk60qkdh/omero-cli-zarr_401e88ec4d174b1088aea465c26310c6
23:55:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-uk60qkdh/omero-cli-zarr_401e88ec4d174b1088aea465c26310c6
23:55:39 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:40 Switched to a new branch 'merge_ci'
23:55:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:40 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit c3059abd8ca92453e40a08e10d82d6b6cdd21f42
23:55:40 Installing build dependencies: started
23:55:41 Installing build dependencies: finished with status 'done'
23:55:41 Getting requirements to build wheel: started
23:55:42 Getting requirements to build wheel: finished with status 'done'
23:55:42 Installing backend dependencies: started
23:55:44 Installing backend dependencies: finished with status 'done'
23:55:44 Preparing metadata (pyproject.toml): started
23:55:44 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
23:55:44 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
23:55:44 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
23:55:44 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
23:55:44 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:44 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
23:55:45 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:45 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
23:55:45 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:45 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
23:55:46 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:46 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
23:55:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
23:55:46 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:46 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
23:55:46 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:46 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
23:55:46 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:46 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
23:55:46 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:46 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
23:55:46 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
23:55:47 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB)
23:55:47 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
23:55:47 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
23:55:47 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
23:55:47 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
23:55:47 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB)
23:55:47 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:47 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB)
23:55:47 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:48 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
23:55:48 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:48 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
23:55:48 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:48 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
23:55:48 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0)
23:55:49 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:49 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
23:55:49 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
23:55:49 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4)
23:55:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
23:55:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
23:55:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
23:55:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
23:55:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.3.0)
23:55:49 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:49 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
23:55:49 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:49 Using cached aiobotocore-3.9.1-py3-none-any.whl.metadata (31 kB)
23:55:49 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:49 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
23:55:49 Collecting botocore<1.43.76,>=1.43.66 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:49 Using cached botocore-1.43.75-py3-none-any.whl.metadata (5.6 kB)
23:55:50 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:50 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
23:55:50 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:50 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
23:55:50 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
23:55:50 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:50 Using cached wrapt-2.4.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
23:55:51 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:51 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
23:55:51 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:51 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
23:55:51 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:51 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
23:55:51 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:51 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
23:55:51 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:51 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
23:55:52 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:52 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB)
23:55:52 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.76,>=1.43.66->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0)
23:55:52 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
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23:55:52 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:52 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
23:55:52 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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23:55:52 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:52 Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB)
23:55:52 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:52 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
23:55:53 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:53 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
23:55:53 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:53 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
23:55:53 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:53 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
23:55:53 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:53 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
23:55:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.1)
23:55:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22)
23:55:53 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
23:55:53 Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB)
23:55:53 Using cached click-8.5.0-py3-none-any.whl (125 kB)
23:55:53 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
23:55:53 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB)
23:55:53 Using cached importlib_metadata-9.0.1-py3-none-any.whl (27 kB)
23:55:53 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
23:55:53 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
23:55:53 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
23:55:54 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
23:55:54 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
23:55:54 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
23:55:54 Using cached aiobotocore-3.9.1-py3-none-any.whl (102 kB)
23:55:54 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
23:55:54 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
23:55:54 Using cached botocore-1.43.75-py3-none-any.whl (15.7 MB)
23:55:54 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
23:55:54 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
23:55:54 Using cached wrapt-2.4.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (217 kB)
23:55:54 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
23:55:54 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
23:55:54 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
23:55:54 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
23:55:54 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
23:55:54 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
23:55:54 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
23:55:54 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
23:55:54 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
23:55:54 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
23:55:54 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
23:55:55 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
23:55:55 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
23:55:55 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
23:55:55 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
23:55:55 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
23:55:55 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
23:55:55 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
23:55:55 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
23:55:55 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
23:55:55 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
23:55:55 Building wheels for collected packages: omero-cli-zarr
23:55:55 Building wheel for omero-cli-zarr (pyproject.toml): started
23:55:56 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
23:55:56 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+gc3059ab-py3-none-any.whl size=39539 sha256=6215e138b1a9a7117538a710135919d0dc49f88a67959d5b49d4f8e296e6b2db
23:55:56 Stored in directory: /tmp/pip-ephem-wheel-cache-8876gp1e/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
23:55:56 Successfully built omero-cli-zarr
23:55:56 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
23:56:28 Attempting uninstall: pydantic-core
23:56:28 Found existing installation: pydantic_core 2.46.5
23:56:28 Uninstalling pydantic_core-2.46.5:
23:56:28 Successfully uninstalled pydantic_core-2.46.5
23:56:58 Attempting uninstall: pydantic
23:56:59 Found existing installation: pydantic 2.13.5
23:56:59 Uninstalling pydantic-2.13.5:
23:56:59 Successfully uninstalled pydantic-2.13.5
23:57:33
23:57:34 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.1 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.75 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+gc3059ab partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
23:57:34 + pip install omero-certificates
23:57:35 Collecting omero-certificates
23:57:35 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
23:57:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
23:57:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
23:57:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
23:57:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
23:57:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
23:57:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
23:57:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
23:57:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
23:57:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.0)
23:57:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1)
23:57:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19)
23:57:35 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
23:57:35 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
23:57:35 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
23:57:35 Installing collected packages: omero-certificates
23:57:35 Successfully installed omero-certificates-0.4.0
23:57:36 + for x in *.tar.gz
23:57:36 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
23:57:36 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
23:57:36 Installing build dependencies: started
23:57:37 Installing build dependencies: finished with status 'done'
23:57:37 Getting requirements to build wheel: started
23:57:38 Getting requirements to build wheel: finished with status 'done'
23:57:38 Preparing metadata (pyproject.toml): started
23:57:38 Preparing metadata (pyproject.toml): finished with status 'done'
23:57:38 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
23:57:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
23:57:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
23:57:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
23:57:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
23:57:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
23:57:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
23:57:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
23:57:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.0)
23:57:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1)
23:57:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19)
23:57:38 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
23:57:38 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
23:57:38 Building wheels for collected packages: omero-dropbox
23:57:38 Building wheel for omero-dropbox (pyproject.toml): started
23:57:38 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
23:57:38 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=9da1fa36cc43eeb5c3eecdd49f7b53f40e8f104bdf4636d48dca5a880d4fe93d
23:57:38 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
23:57:38 Successfully built omero-dropbox
23:57:39 Installing collected packages: omero-dropbox
23:57:39 Successfully installed omero-dropbox-5.7.1.dev0
23:57:39 + for x in *.tar.gz
23:57:39 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
23:57:40 Processing ./omero_marshal-0.9.2.dev0.tar.gz
23:57:40 Installing build dependencies: started
23:57:41 Installing build dependencies: finished with status 'done'
23:57:41 Getting requirements to build wheel: started
23:57:41 Getting requirements to build wheel: finished with status 'done'
23:57:41 Preparing metadata (pyproject.toml): started
23:57:42 Preparing metadata (pyproject.toml): finished with status 'done'
23:57:42 Building wheels for collected packages: omero_marshal
23:57:42 Building wheel for omero_marshal (pyproject.toml): started
23:57:42 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
23:57:42 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=8e7bcb00689f6d4a169f3f0c16a23a73d1126743e9596ca3828025db8117f70b
23:57:42 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
23:57:42 Successfully built omero_marshal
23:57:42 Installing collected packages: omero_marshal
23:57:44 Successfully installed omero_marshal-0.9.2.dev0
23:57:44 + for x in *.tar.gz
23:57:44 + pip install -U omero_py-5.23.1.dev0.tar.gz
23:57:45 Processing ./omero_py-5.23.1.dev0.tar.gz
23:57:45 Installing build dependencies: started
23:57:46 Installing build dependencies: finished with status 'done'
23:57:46 Getting requirements to build wheel: started
23:57:47 Getting requirements to build wheel: finished with status 'done'
23:57:47 Preparing metadata (pyproject.toml): started
23:57:47 Preparing metadata (pyproject.toml): finished with status 'done'
23:57:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
23:57:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
23:57:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
23:57:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
23:57:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
23:57:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
23:57:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
23:57:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.0)
23:57:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1)
23:57:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19)
23:57:47 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
23:57:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
23:57:47 Building wheels for collected packages: omero-py
23:57:47 Building wheel for omero-py (pyproject.toml): started
23:57:48 Building wheel for omero-py (pyproject.toml): finished with status 'done'
23:57:48 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787190 sha256=c9b7b60849660af6a4c130d7be748bc4179c20ad1031010fe8fac7b204056a28
23:57:48 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
23:57:48 Successfully built omero-py
23:57:48 Installing collected packages: omero-py
23:57:48 Attempting uninstall: omero-py
23:57:48 Found existing installation: omero-py 5.23.0
23:57:49 Uninstalling omero-py-5.23.0:
23:58:00 Successfully uninstalled omero-py-5.23.0
23:58:14 Successfully installed omero-py-5.23.1.dev0
23:58:14 + for x in *.tar.gz
23:58:14 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
23:58:15 Processing ./omero_scripts-5.10.1.dev0.tar.gz
23:58:15 Installing build dependencies: started
23:58:16 Installing build dependencies: finished with status 'done'
23:58:16 Getting requirements to build wheel: started
23:58:16 Getting requirements to build wheel: finished with status 'done'
23:58:16 Preparing metadata (pyproject.toml): started
23:58:17 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:17 Building wheels for collected packages: omero-scripts
23:58:17 Building wheel for omero-scripts (pyproject.toml): started
23:58:17 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
23:58:17 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=8307168f212c63a5ab4176f5c9614d64794c95792425ec4e17c1cf91e831f161
23:58:17 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
23:58:17 Successfully built omero-scripts
23:58:17 Installing collected packages: omero-scripts
23:58:18 Successfully installed omero-scripts-5.10.1.dev0
23:58:18 + for x in *.tar.gz
23:58:18 + pip install -U omero_web-5.33.1.dev0.tar.gz
23:58:19 Processing ./omero_web-5.33.1.dev0.tar.gz
23:58:19 Installing build dependencies: started
23:58:20 Installing build dependencies: finished with status 'done'
23:58:20 Getting requirements to build wheel: started
23:58:21 Getting requirements to build wheel: finished with status 'done'
23:58:21 Preparing metadata (pyproject.toml): started
23:58:21 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:21 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (5.23.1.dev0)
23:58:21 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.1.dev0)
23:58:21 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
23:58:22 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.1.dev0)
23:58:22 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
23:58:22 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.1.dev0)
23:58:22 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
23:58:22 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.1.dev0)
23:58:22 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
23:58:22 Collecting whitenoise>=5.3.0 (from omero-web==5.33.1.dev0)
23:58:22 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
23:58:22 Collecting gunicorn>=19.3 (from omero-web==5.33.1.dev0)
23:58:22 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB)
23:58:22 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (0.9.2.dev0)
23:58:22 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (12.3.0)
23:58:22 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (2026.3.post1)
23:58:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (4.3.0)
23:58:22 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.1.dev0) (26.3)
23:58:22 Collecting importlib-resources (from omero-web==5.33.1.dev0)
23:58:23 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
23:58:23 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0)
23:58:23 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
23:58:23 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.1.dev0)
23:58:23 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB)
23:58:23 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0) (65.5.1)
23:58:23 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.1.dev0)
23:58:23 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
23:58:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.4.4)
23:58:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (1.0.0)
23:58:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.4.6)
23:58:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (6.0.3)
23:58:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.6.5)
23:58:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.34.2)
23:58:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.5.1)
23:58:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (3.19)
23:58:23 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2.7.0)
23:58:23 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.1.dev0) (2026.7.22)
23:58:23 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
23:58:23 Using cached django-5.2.17-py3-none-any.whl (8.3 MB)
23:58:23 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
23:58:23 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
23:58:23 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
23:58:23 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB)
23:58:23 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB)
23:58:24 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
23:58:24 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
23:58:24 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
23:58:24 Building wheels for collected packages: omero-web
23:58:24 Building wheel for omero-web (pyproject.toml): started
23:58:25 Building wheel for omero-web (pyproject.toml): finished with status 'done'
23:58:25 Created wheel for omero-web: filename=omero_web-5.33.1.dev0-py3-none-any.whl size=2821687 sha256=d3e8c60a99b8a278739ec730feb1130e01a3e12567db6e7a584cd35249071e03
23:58:25 Stored in directory: /home/omero/.cache/pip/wheels/77/f6/23/fc9c2b5a287f0e430435deaa5ed7a3a49a9c9a8f56769f82c4
23:58:25 Successfully built omero-web
23:58:25 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
23:59:35
23:59:35 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.1.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0
23:59:35 + wget https://raw.githubusercontent.com/ome/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
23:59:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
23:59:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
23:59:35 --2026-09-08 23:59:35-- https://raw.githubusercontent.com/ome/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
23:59:36 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.110.133, ...
23:59:36 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
23:59:36 HTTP request sent, awaiting response... 200 OK
23:59:36 Length: 133662 (131K) [text/plain]
23:59:36 Saving to: ‘Figure_To_Pdf.py’
23:59:36
23:59:36 0K .......... .......... .......... .......... .......... 38% 3.07M 0s
23:59:36 50K .......... .......... .......... .......... .......... 76% 4.72M 0s
23:59:36 100K .......... .......... .......... 100% 16.2M=0.03s
23:59:36
23:59:36 2026-09-08 23:59:36 (4.54 MB/s) - ‘Figure_To_Pdf.py’ saved [133662/133662]
23:59:36
23:59:36 + chmod 755 Figure_To_Pdf.py
23:59:36 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
23:59:36 + omero config set omero.db.name OMERO-server
23:59:44 + omero config set omero.db.host pg
23:59:50 + omero config set omero.db.user postgres
23:59:54 + omero config set omero.data.dir /home/omero/omero-server-data
23:59:59 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:00:05 + omero config set omero.db.poolsize 25
00:00:12 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:00:19 + omero config set omero.security.trustStorePassword changeit
00:00:28 + omero config set omero.mail.config true
00:00:35 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:00:45 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:00:54 + omero certificates
00:01:01 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
00:01:01 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:01:02 + '[' false = true ']'
00:01:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:01:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:01:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:01:02 2026-09-09 00:01:02,667 [ omego.db] DEBUG dbcommand => upgrade
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG dbhost => localhost
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG dbname => OMERO-server
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG dbpass => omero
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG dbuser => omero
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG rootpass => omero
00:01:02 2026-09-09 00:01:02,668 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:01:02 2026-09-09 00:01:02,674 [omego.extern] INFO Executing : omero version
00:01:08 OMERO.py version:
00:01:09 OMERO.server version:
00:01:09 5.6.3-677-ab3492c05b-ice36-b73
00:01:09 5.23.1.dev0
00:01:09 2026-09-09 00:01:09,549 [omego.extern] INFO Completed [6.874 s]
00:01:09 2026-09-09 00:01:09,549 [omego.extern] DEBUG Using omero CLI from omero
00:01:09 2026-09-09 00:01:09,549 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:01:09 2026-09-09 00:01:09,549 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:09 2026-09-09 00:01:09,549 [omego.extern] INFO Executing : omero config get --show-password
00:01:16 2026-09-09 00:01:16,757 [omego.extern] INFO Completed [7.208 s]
00:01:16 2026-09-09 00:01:16,757 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:16 2026-09-09 00:01:16,757 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:01:16 2026-09-09 00:01:16,842 [omego.extern] INFO Completed [0.085 s]
00:01:16 2026-09-09 00:01:16,842 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
00:01:16 2026-09-09 00:01:16,843 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
00:01:16
00:01:16 2026-09-09 00:01:16,843 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:16 2026-09-09 00:01:16,843 [omego.extern] INFO Executing : omero config get --show-password
00:01:23 2026-09-09 00:01:23,631 [omego.extern] INFO Completed [6.789 s]
00:01:23 2026-09-09 00:01:23,632 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:23 2026-09-09 00:01:23,632 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:01:23 2026-09-09 00:01:23,681 [omego.extern] INFO Completed [0.050 s]
00:01:23 2026-09-09 00:01:23,681 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
00:01:23 2026-09-09 00:01:23,682 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:01:23 2026-09-09 00:01:23,682 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:23 2026-09-09 00:01:23,682 [omego.extern] INFO Executing : omero config get --show-password
00:01:29 2026-09-09 00:01:29,902 [omego.extern] INFO Completed [6.221 s]
00:01:29 2026-09-09 00:01:29,902 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:29 2026-09-09 00:01:29,902 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:01:29 2026-09-09 00:01:29,992 [omego.extern] INFO Completed [0.089 s]
00:01:29 2026-09-09 00:01:29,992 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:01:29 2026-09-09 00:01:29,992 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:01:30 2026-09-09 00:01:30,031 [ omego.db] INFO Database is already at OMERO5.4__0
00:01:30 + export LANG=en_US.UTF-8
00:01:30 + LANG=en_US.UTF-8
00:01:30 + export LANGUAGE=en_US:en
00:01:30 + LANGUAGE=en_US:en
00:01:30 + export LC_ALL=en_US.UTF-8
00:01:30 + LC_ALL=en_US.UTF-8
00:01:30 + BUILD_ID=DONT_KILL_ME
00:01:30 + omero admin start
00:01:46 No descriptor given. Using etc/grid/default.xml
00:02:02 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:02:02 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:02:02 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:02:02 Waiting on startup. Use CTRL-C to exit
00:02:03 + omero admin waitup
00:02:12 Waiting on startup. Use CTRL-C to exit
00:02:13 + omero admin diagnostics
00:02:19
00:02:19 ================================================================================
00:02:19 OMERO Diagnostics (admin)
00:02:19 ================================================================================
00:02:19
00:02:19 Commands: java -version 21.0.12 (/usr/bin/java)
00:02:19 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:02:19 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:02:19 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:02:20 Commands: psql --version 16.14 (/usr/bin/psql)
00:02:20 Commands: openssl version 3.5.527 (/usr/bin/openssl)
00:02:20
00:02:20 Component: OMERO.py 5.23.1.dev0
00:02:20 Component: OMERO.server 5.6.3-677-ab3492c05b-ice36-b73
00:02:20
00:02:20 Server: icegridnode running
00:02:20 Server: Blitz-0 active (pid = 40188, enabled)
00:02:20 Server: Indexer-0 active (pid = 40206, enabled)
00:02:20 Server: OMERO.Glacier2 active (pid = 40230, enabled)
00:02:20 Server: OMERO.IceStorm active (pid = 40231, enabled)
00:02:20 Server: Processor-0 active (pid = 40211, enabled)
00:02:20 Server: Tables-0 active (pid = 40227, enabled)
00:02:20
00:02:20 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:02:20 Log files: Blitz-0.log 32.7 KB errors=0 warnings=1
00:02:20 Log files: DropBox.log n/a
00:02:20 Log files: FileServer.log n/a
00:02:20 Log files: Indexer-0.log 2.6 KB
00:02:20 Log files: MonitorServer.log n/a
00:02:20 Log files: Processor-0.log 856 B
00:02:20 Log files: Tables-0.log 1.1 KB
00:02:20 Log files: TestDropBox.log n/a
00:02:20 Log files: master.err empty
00:02:20 Log files: master.out 30.7 KB
00:02:20 Log files: Total size 0.07 MB
00:02:20
00:02:20
00:02:20 Environment:OMERO_HOME=(unset)
00:02:20 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:02:20 Environment:OMERO_NODE=(unset)
00:02:20 Environment:OMERO_MASTER=(unset)
00:02:20 Environment:OMERO_USERDIR=(unset)
00:02:20 Environment:OMERO_TMPDIR=(unset)
00:02:20 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:02:20 Environment:PYTHONPATH=(unset)
00:02:20 Environment:ICE_HOME=/opt/ice-3.6.5
00:02:20 Environment:LD_LIBRARY_PATH=(unset)
00:02:20 Environment:DYLD_LIBRARY_PATH=(unset)
00:02:20
00:02:20 OMERO SSL port:4064
00:02:20 OMERO TCP port:4063
00:02:20 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:02:20 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:02:20
00:02:20 JVM settings: Blitz-${index} -Xmx5007m
00:02:20 JVM settings: Indexer-${index} -Xmx3338m
00:02:20 JVM settings: PixelData-${index} -Xmx5007m
00:02:20 JVM settings: Repository-${index} -Xmx3338m
00:02:20
00:02:20 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:20 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:20 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:20 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:02:20 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:02:20 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:02:20 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:02:20 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:02:20 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:02:20 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:02:20 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:02:20 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398
00:02:21 + deactivate
00:02:21 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:02:21 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:02:21 + export PATH
00:02:21 + unset _OLD_VIRTUAL_PATH
00:02:21 + '[' -n '' ']'
00:02:21 + hash -r
00:02:21 + '[' -n '' ']'
00:02:21 + unset VIRTUAL_ENV
00:02:21 + unset VIRTUAL_ENV_PROMPT
00:02:21 + '[' '!' '' = nondestructive ']'
00:02:21 + unset -f deactivate
00:02:21 Finished: SUCCESS
