23:58:56 Started by upstream project "Trigger" build number 93
23:58:56 originally caused by:
23:58:56 Started by timer
23:58:56 Running as SYSTEM
23:58:56 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
23:58:56 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1474293610905920316.sh
23:58:56 + source /home/settings.env
23:58:56 ++ OMERO_DB_HOST=pg
23:58:56 ++ OMERO_DB_USER=postgres
23:58:56 ++ OMERO_DB_PASS=
23:58:56 ++ OMERO_ROOT_PASS=omero
23:58:56 ++ OMERO_DATA_DIR=/OMERO
23:58:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:58:56 + OMERO_DB_NAME=OMERO-server
23:58:56 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
23:58:56 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:58:56 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:58:56 + OMERO_DATA_DIR=/home/omero/omero-server-data
23:58:56 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
23:58:56 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
23:58:56 ++ deactivate nondestructive
23:58:56 ++ '[' -n '' ']'
23:58:56 ++ '[' -n '' ']'
23:58:56 ++ hash -r
23:58:56 ++ '[' -n '' ']'
23:58:56 ++ unset VIRTUAL_ENV
23:58:56 ++ unset VIRTUAL_ENV_PROMPT
23:58:56 ++ '[' '!' nondestructive = nondestructive ']'
23:58:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
23:58:56 ++ export VIRTUAL_ENV
23:58:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:58:56 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:58:56 ++ export PATH
23:58:56 ++ '[' -n '' ']'
23:58:56 ++ '[' -z '' ']'
23:58:56 ++ _OLD_VIRTUAL_PS1=
23:58:56 ++ PS1='(.venv3) '
23:58:56 ++ export PS1
23:58:56 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
23:58:56 ++ export VIRTUAL_ENV_PROMPT
23:58:56 ++ hash -r
23:58:56 + omero admin stop
23:59:31 Waiting on shutdown. Use CTRL-C to exit
23:59:31 .+ sleep 5
23:59:47 + deactivate
23:59:47 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
23:59:47 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:59:47 + export PATH
23:59:47 + unset _OLD_VIRTUAL_PATH
23:59:47 + '[' -n '' ']'
23:59:47 + hash -r
23:59:47 + '[' -n '' ']'
23:59:47 + unset VIRTUAL_ENV
23:59:47 + unset VIRTUAL_ENV_PROMPT
23:59:47 + '[' '!' '' = nondestructive ']'
23:59:47 + unset -f deactivate
23:59:47 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:03:33 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:03:58 + '[' false = true ']'
00:03:58 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:03:58 Skipping PURGE_DATA:CleanDbAndRepo
00:03:58 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:04:10 Copied 1 artifact from "OMERO-build" build number 75
00:04:11 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 66
00:04:11 Copied 2 artifacts from "OMERO-build-build" build number 77
00:04:11 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2109301709893324630.sh
00:04:11 + source /home/settings.env
00:04:11 ++ OMERO_DB_HOST=pg
00:04:11 ++ OMERO_DB_USER=postgres
00:04:11 ++ OMERO_DB_PASS=
00:04:11 ++ OMERO_ROOT_PASS=omero
00:04:11 ++ OMERO_DATA_DIR=/OMERO
00:04:11 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:04:11 + OMERO_DB_NAME=OMERO-server
00:04:11 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:04:11 + mkdir -p /home/omero/omero-server-data
00:04:11 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:04:11 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:04:11 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:04:11 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:04:11 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:04:11 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:04:11 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:04:11 ++ ls OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
00:04:11 + ZIP=OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
00:04:11 + '[' '!' -z '' ']'
00:04:11 + DIST=OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75
00:04:11 + unzip OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
00:04:11 Archive: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/blitz/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/grid/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/profiles/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/error/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/grid/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/janelia/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/matplotlib/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/ncsa_paledit/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/seaborn/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/luts/wcif/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/analysis_scripts/
00:04:11 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/annotation_scripts/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/export_scripts/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/figure_scripts/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/import_scripts/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/scripts/omero/util_scripts/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/misc/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__1/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__10/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__11/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__2/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__3/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__4/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__5/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__6/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__7/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__8/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__9/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__4/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__5/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__6/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__7/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.1__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.2__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.2__0/t/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.3__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.4__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.0__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.1__1/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.2__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__1/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__2/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__3/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/var/
00:04:12 creating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/var/tmp/
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/LICENSE.txt
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/backup.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/blitz/mail-senders.example
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/blitz/mail-server.example
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/build.properties
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/env.bat
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/env.sh
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/hibernate.properties
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/ice.config
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/logback-cli.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/logback-indexing-cli.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/logback-indexing.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/logback.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/mime.types
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/node1.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/node2.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/omero.properties
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/profiles/psql
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/rollover.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/Windows.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/error/maintainance.html
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/grid/README
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/grid/default.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/grid/templates.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/grid/windefault.xml
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/ice.config
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/internal.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/master.cfg
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/templates/robot.template
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/etc/testdropbox.config
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/history.rst
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/OMEZarrReader.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/accessors-smart.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/activation.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aggdesigner-algorithm.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aircompressor.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/annotations.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/antlr.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aopalliance.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/apache-client.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/apiguardian-api.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/arns.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/asm.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/auth.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/avatica-core.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/avatica-metrics.jar
00:04:12 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-core.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-java-sdk-core.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-java-sdk-kms.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-java-sdk-s3.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-query-protocol.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/aws-xml-protocol.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/base.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-anim.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-awt-util.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-bridge.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-codec.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-constants.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-css.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-dom.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-ext.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-gvt.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-i18n.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-parser.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-script.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-shared-resources.jar
00:04:13 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/client/batik-svg-dom.jar
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00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/solr-solrj.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/specification.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-aop.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-beans.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-context-support.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-context.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-core.jar
00:04:29 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-expression.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-jdbc.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-jms.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-ldap-core.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-messaging.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-orm.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-security-core.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-security-ldap.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/spring-tx.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/sqlite-jdbc.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/subethasmtp.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/third-party-jackson-core.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/turbojpeg.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/udunits.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/url-connection-client.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/utils-lite.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/utils.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/uzaygezen-core.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xalan.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xercesImpl.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xml-apis-ext.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xml-apis.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xmlgraphics-commons.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xmpcore.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/xpp3.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/zarr-java.jar
00:04:30 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/lib/server/zstd-jni.jar
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/README
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/agpl.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/antlr.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/apache-v1.1.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/apache-v2.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/asm.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/bouncy_castle_license.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/bsd.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/cddl-v1.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/cpl-v10.html
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/crystalclear.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/django.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/dom4j.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/epl-v1.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/fbsd.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/freemarker.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/gpl-v2.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/gpl.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/gtest.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/iconsweets_license.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/jamon.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/jmock.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/jquery.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/jtidy.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/lgpl-3.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/lgpl-v2.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/lgpl-v2.1.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/lgpl-v3.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/lgpl.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/matplotlib.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/mit.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/mpl-v1_0.htm
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/npl-1_1.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/path.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/pil.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/postgresql.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/psf-v2.0.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/psf-v2.5.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/scons.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/slf4j.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/tablelayout.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/which.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/zlib-libpng.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/share/licenses/zpl-v2.1.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/README.txt
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/misc/Makefile
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/misc/current.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/misc/enums.py
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__1/OMERO3__7.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__3/OMERO3__5.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__4/OMERO3__5.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:04:31 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__4/OMERO3__1.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__5/OMERO3__4.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__6/OMERO3__5.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO3__7/OMERO3__6.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO4__0/OMERO3A__11.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/psql-footer.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/psql-header.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/schema.sql
00:04:32 inflating: OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75/sql/psql/OMERO5.4__0/views.sql
00:04:32 + rm -f OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75.zip
00:04:32 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-677-fc0ad25e3d-ice36-b75 /home/omero/workspace/OMERO-server/OMERO.server
00:04:32 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:04:32 ++ deactivate nondestructive
00:04:32 ++ '[' -n '' ']'
00:04:32 ++ '[' -n '' ']'
00:04:32 ++ hash -r
00:04:32 ++ '[' -n '' ']'
00:04:32 ++ unset VIRTUAL_ENV
00:04:32 ++ unset VIRTUAL_ENV_PROMPT
00:04:32 ++ '[' '!' nondestructive = nondestructive ']'
00:04:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:04:32 ++ export VIRTUAL_ENV
00:04:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:04:32 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:04:32 ++ export PATH
00:04:32 ++ '[' -n '' ']'
00:04:32 ++ '[' -z '' ']'
00:04:32 ++ _OLD_VIRTUAL_PS1=
00:04:32 ++ PS1='(.venv3) '
00:04:32 ++ export PS1
00:04:32 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:04:32 ++ export VIRTUAL_ENV_PROMPT
00:04:32 ++ hash -r
00:04:32 + pip install -U pip
00:04:34 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:04:34 Collecting pip
00:04:35 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
00:04:35 Installing collected packages: pip
00:04:35 Attempting uninstall: pip
00:04:35 Found existing installation: pip 22.3.1
00:04:36 Uninstalling pip-22.3.1:
00:04:36 Successfully uninstalled pip-22.3.1
00:04:54 Successfully installed pip-26.2.1
00:04:54 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:04:55 Collecting zeroc-ice==3.6.5
00:04:55 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
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00:04:58 Installing collected packages: zeroc-ice
00:05:02 Successfully installed zeroc-ice-3.6.5
00:05:02 + pip install markdown
00:05:03 Collecting markdown
00:05:03 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
00:05:04 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
00:05:04 Installing collected packages: markdown
00:05:05 Successfully installed markdown-3.10.3
00:05:05 + pip install reportlab
00:05:06 Collecting reportlab
00:05:06 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB)
00:05:06 Collecting pillow>=9.0.0 (from reportlab)
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00:05:07 Collecting charset-normalizer (from reportlab)
00:05:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB)
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00:05:07 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
00:05:07 Installing collected packages: pillow, charset-normalizer, reportlab
00:05:16
00:05:16 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1
00:05:16 + pip install pyarrow
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00:05:18 Installing collected packages: pyarrow
00:05:30 Successfully installed pyarrow-25.0.1
00:05:30 + pip install omego
00:05:31 Collecting omego
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00:05:32 Installing collected packages: six, future, yaclifw, omego
00:05:39
00:05:39 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:05:39 + pip install tables
00:05:40 Collecting tables
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00:05:42 Collecting ndindex (from blosc2>=2.3.0->tables)
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00:05:44 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
00:05:44 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
00:05:44 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:05:44 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
00:05:44 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
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00:05:45 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
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00:05:46 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:05:46 Downloading blosc2-4.13.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:05:46 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.6/6.6 MB 12.3 MB/s 0:00:00
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00:05:48 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
00:05:48 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB)
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00:05:48 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
00:05:49 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
00:06:44
00:06:44 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.13.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0
00:06:44 + pip install jinja2
00:06:45 Collecting jinja2
00:06:45 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:06:45 Collecting MarkupSafe>=2.0 (from jinja2)
00:06:45 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:06:45 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
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00:06:46 Installing collected packages: MarkupSafe, jinja2
00:06:47
00:06:47 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:06:47 + pip install omero-py
00:06:48 Collecting omero-py
00:06:48 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
00:06:48 Collecting appdirs (from omero-py)
00:06:48 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:06:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:06:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
00:06:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
00:06:48 Collecting PyYAML (from omero-py)
00:06:49 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:06:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:06:49 Collecting requests (from omero-py)
00:06:49 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:06:49 Collecting portalocker (from omero-py)
00:06:49 Using cached portalocker-4.3.0-py3-none-any.whl.metadata (11 kB)
00:06:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1)
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00:06:49 Collecting urllib3<3,>=1.26 (from requests->omero-py)
00:06:49 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
00:06:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
00:06:49 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
00:06:49 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
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00:06:49 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
00:06:50 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
00:07:11
00:07:11 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.0 requests-2.34.2 urllib3-2.7.0
00:07:11 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:07:12 Collecting omero-metadata
00:07:12 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-45pylqaj/omero-metadata_546e31d9f0d44ee392ca48a0e5291454
00:07:12 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-45pylqaj/omero-metadata_546e31d9f0d44ee392ca48a0e5291454
00:07:14 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a642837c51052d81adfa0468df23b99345540470
00:07:14 Installing build dependencies: started
00:07:15 Installing build dependencies: finished with status 'done'
00:07:15 Getting requirements to build wheel: started
00:07:16 Getting requirements to build wheel: finished with status 'done'
00:07:16 Preparing metadata (pyproject.toml): started
00:07:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:07:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
00:07:16 Collecting pandas<3,>=2 (from omero-metadata)
00:07:16 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:07:17 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
00:07:17 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
00:07:17 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:07:17 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
00:07:17 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
00:07:17 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
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00:07:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
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00:07:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
00:07:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.0)
00:07:17 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0)
00:07:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1)
00:07:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19)
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00:07:17 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
00:07:17 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
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00:07:17 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB)
00:07:18 Building wheels for collected packages: omero-metadata
00:07:18 Building wheel for omero-metadata (pyproject.toml): started
00:07:18 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:07:18 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=66e04ba9218375b7a073528b6e8a939d2151d216713b5532bf79ac6b6d0fa2b1
00:07:18 Stored in directory: /tmp/pip-ephem-wheel-cache-f5b1wr1i/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:07:18 Successfully built omero-metadata
00:07:18 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:08:15
00:08:15 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3
00:08:15 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:08:16 Collecting omero-cli-render
00:08:16 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-5tftnzv2/omero-cli-render_703973196f104442853be3175dfd43c4
00:08:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-5tftnzv2/omero-cli-render_703973196f104442853be3175dfd43c4
00:08:17 Running command git checkout -b merge_ci --track origin/merge_ci
00:08:18 Switched to a new branch 'merge_ci'
00:08:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:08:18 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 414fb446a1d87326abe838211ad11614bca3de73
00:08:18 Installing build dependencies: started
00:08:19 Installing build dependencies: finished with status 'done'
00:08:19 Getting requirements to build wheel: started
00:08:19 Getting requirements to build wheel: finished with status 'done'
00:08:19 Preparing metadata (pyproject.toml): started
00:08:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:08:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:08:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
00:08:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:08:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:08:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
00:08:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
00:08:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:08:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
00:08:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.0)
00:08:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1)
00:08:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19)
00:08:20 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
00:08:20 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
00:08:20 Building wheels for collected packages: omero-cli-render
00:08:20 Building wheel for omero-cli-render (pyproject.toml): started
00:08:20 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:08:20 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=1e147eb1c22c288b5fcc9e1ac56a3c5e41cc23c2b22daf221ac1a012b93a3cbe
00:08:20 Stored in directory: /tmp/pip-ephem-wheel-cache-4ye3stbo/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:08:20 Successfully built omero-cli-render
00:08:20 Installing collected packages: omero-cli-render
00:08:20 Successfully installed omero-cli-render-0.8.2.dev0
00:08:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:08:22 Collecting omero-cli-duplicate
00:08:22 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-e0g56zl5/omero-cli-duplicate_78f908d0798c4f5f86bde61faf410f45
00:08:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-e0g56zl5/omero-cli-duplicate_78f908d0798c4f5f86bde61faf410f45
00:08:23 Running command git checkout -b merge_ci --track origin/merge_ci
00:08:23 Switched to a new branch 'merge_ci'
00:08:23 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:08:23 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 414699c6dddef16bccd9688c6801fc1dec12745b
00:08:23 Installing build dependencies: started
00:08:24 Installing build dependencies: finished with status 'done'
00:08:24 Getting requirements to build wheel: started
00:08:25 Getting requirements to build wheel: finished with status 'done'
00:08:25 Preparing metadata (pyproject.toml): started
00:08:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:08:25 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
00:08:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:08:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:08:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
00:08:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
00:08:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:08:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:08:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
00:08:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.0)
00:08:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1)
00:08:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19)
00:08:25 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
00:08:25 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
00:08:25 Building wheels for collected packages: omero-cli-duplicate
00:08:25 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:08:25 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:08:25 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=4100957772f2f246fada979f67571796775e7708549050bf6746f31e082c3e17
00:08:25 Stored in directory: /tmp/pip-ephem-wheel-cache-hkbed85m/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:08:25 Successfully built omero-cli-duplicate
00:08:25 Installing collected packages: omero-cli-duplicate
00:08:26 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:08:26 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:08:26 Collecting omero-cli-zarr
00:08:26 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-t0dsi_jo/omero-cli-zarr_3dcddc292617447fb48e21e3429960e9
00:08:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-t0dsi_jo/omero-cli-zarr_3dcddc292617447fb48e21e3429960e9
00:08:28 Running command git checkout -b merge_ci --track origin/merge_ci
00:08:28 Switched to a new branch 'merge_ci'
00:08:28 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:08:28 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 18a4fb9e99439a854ba6932d67ed5a9311d70f3c
00:08:28 Installing build dependencies: started
00:08:29 Installing build dependencies: finished with status 'done'
00:08:29 Getting requirements to build wheel: started
00:08:30 Getting requirements to build wheel: finished with status 'done'
00:08:30 Installing backend dependencies: started
00:08:32 Installing backend dependencies: finished with status 'done'
00:08:32 Preparing metadata (pyproject.toml): started
00:08:32 Preparing metadata (pyproject.toml): finished with status 'done'
00:08:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
00:08:32 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:08:32 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
00:08:32 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
00:08:33 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:33 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
00:08:33 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:33 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:08:33 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:33 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
00:08:34 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:34 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:08:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
00:08:34 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:34 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:08:34 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:34 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:08:34 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:34 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:08:34 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:34 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
00:08:34 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:08:35 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB)
00:08:35 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:08:35 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
00:08:35 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:08:35 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:08:35 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB)
00:08:35 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:35 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB)
00:08:35 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:36 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
00:08:36 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:36 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
00:08:36 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:36 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
00:08:36 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0)
00:08:37 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:37 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
00:08:37 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
00:08:37 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4)
00:08:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:08:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:08:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
00:08:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:08:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.3.0)
00:08:37 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:37 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:08:37 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:37 Using cached aiobotocore-3.9.1-py3-none-any.whl.metadata (31 kB)
00:08:37 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:37 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:08:37 Collecting botocore<1.43.76,>=1.43.66 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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00:08:38 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:38 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:08:38 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:38 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:08:38 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:08:39 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:39 Downloading wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:08:39 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:08:39 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:08:39 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:08:39 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:39 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:08:40 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:40 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
00:08:40 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:40 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB)
00:08:40 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.76,>=1.43.66->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0)
00:08:40 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:08:40 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.19)
00:08:40 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:40 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:08:41 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:08:41 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB)
00:08:41 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:08:41 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
00:08:41 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:08:41 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:41 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:08:42 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:08:42 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:08:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.1)
00:08:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22)
00:08:42 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
00:08:42 Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB)
00:08:42 Using cached click-8.5.0-py3-none-any.whl (125 kB)
00:08:42 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:08:42 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB)
00:08:42 Using cached importlib_metadata-9.0.1-py3-none-any.whl (27 kB)
00:08:42 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
00:08:42 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
00:08:42 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
00:08:42 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:08:42 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
00:08:42 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
00:08:42 Using cached aiobotocore-3.9.1-py3-none-any.whl (102 kB)
00:08:42 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
00:08:42 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:08:42 Using cached botocore-1.43.75-py3-none-any.whl (15.7 MB)
00:08:42 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:08:43 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (272 kB)
00:08:43 Downloading wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (226 kB)
00:08:43 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
00:08:43 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
00:08:43 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:08:43 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:08:43 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:08:43 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
00:08:43 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:08:43 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
00:08:43 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
00:08:43 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:08:43 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:08:43 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:08:43 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:08:44 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:08:44 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:08:44 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:08:44 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:08:44 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
00:08:44 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:08:44 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:08:44 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:08:44 Building wheels for collected packages: omero-cli-zarr
00:08:44 Building wheel for omero-cli-zarr (pyproject.toml): started
00:08:45 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:08:45 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g18a4fb9-py3-none-any.whl size=39540 sha256=8f86c283b39c68091a768b5bfbac85698b28d3b108164c5426aadfb82fa60764
00:08:45 Stored in directory: /tmp/pip-ephem-wheel-cache-um86m2v2/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:08:45 Successfully built omero-cli-zarr
00:08:45 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:09:25 Attempting uninstall: pydantic-core
00:09:25 Found existing installation: pydantic_core 2.46.5
00:09:25 Uninstalling pydantic_core-2.46.5:
00:09:25 Successfully uninstalled pydantic_core-2.46.5
00:10:01 Attempting uninstall: pydantic
00:10:01 Found existing installation: pydantic 2.13.5
00:10:01 Uninstalling pydantic-2.13.5:
00:10:01 Successfully uninstalled pydantic-2.13.5
00:10:40
00:10:40 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.1 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.75 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.8.0 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g18a4fb9 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.1 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
00:10:41 + pip install omero-certificates
00:10:42 Collecting omero-certificates
00:10:42 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:10:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
00:10:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:10:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:10:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
00:10:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
00:10:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:10:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:10:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
00:10:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.0)
00:10:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1)
00:10:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19)
00:10:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
00:10:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
00:10:42 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:10:43 Installing collected packages: omero-certificates
00:10:43 Successfully installed omero-certificates-0.4.0
00:10:43 + for x in *.tar.gz
00:10:43 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:10:44 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:10:44 Installing build dependencies: started
00:10:45 Installing build dependencies: finished with status 'done'
00:10:45 Getting requirements to build wheel: started
00:10:46 Getting requirements to build wheel: finished with status 'done'
00:10:46 Preparing metadata (pyproject.toml): started
00:10:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:10:46 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
00:10:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:10:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:10:46 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
00:10:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
00:10:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:10:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:10:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
00:10:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.0)
00:10:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1)
00:10:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19)
00:10:46 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
00:10:46 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
00:10:46 Building wheels for collected packages: omero-dropbox
00:10:46 Building wheel for omero-dropbox (pyproject.toml): started
00:10:46 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:10:46 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=45de454afa5f132eace5792b9b731f6d77ae4240a10d8af3b3b0ecb236388fd2
00:10:46 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:10:46 Successfully built omero-dropbox
00:10:47 Installing collected packages: omero-dropbox
00:10:47 Successfully installed omero-dropbox-5.7.1.dev0
00:10:47 + for x in *.tar.gz
00:10:47 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:10:48 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:10:48 Installing build dependencies: started
00:10:49 Installing build dependencies: finished with status 'done'
00:10:49 Getting requirements to build wheel: started
00:10:50 Getting requirements to build wheel: finished with status 'done'
00:10:50 Preparing metadata (pyproject.toml): started
00:10:50 Preparing metadata (pyproject.toml): finished with status 'done'
00:10:50 Building wheels for collected packages: omero_marshal
00:10:50 Building wheel for omero_marshal (pyproject.toml): started
00:10:51 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:10:51 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=1e1d0776dd50bfb35dfdf57e20271b249e45f8b1eab24c01b9b77dd7230b9dc8
00:10:51 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:10:51 Successfully built omero_marshal
00:10:51 Installing collected packages: omero_marshal
00:10:54 Successfully installed omero_marshal-0.9.2.dev0
00:10:54 + for x in *.tar.gz
00:10:54 + pip install -U omero_py-5.23.1.dev0.tar.gz
00:10:55 Processing ./omero_py-5.23.1.dev0.tar.gz
00:10:55 Installing build dependencies: started
00:10:56 Installing build dependencies: finished with status 'done'
00:10:56 Getting requirements to build wheel: started
00:10:57 Getting requirements to build wheel: finished with status 'done'
00:10:57 Preparing metadata (pyproject.toml): started
00:10:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:10:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
00:10:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
00:10:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
00:10:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
00:10:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
00:10:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
00:10:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
00:10:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.0)
00:10:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1)
00:10:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19)
00:10:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
00:10:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
00:10:57 Building wheels for collected packages: omero-py
00:10:57 Building wheel for omero-py (pyproject.toml): started
00:10:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:10:58 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787190 sha256=8c04cc69e78c104b3224460597ccbf540b6463e7cfe7541d7dbd0e65e1b08752
00:10:58 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
00:10:58 Successfully built omero-py
00:10:59 Installing collected packages: omero-py
00:10:59 Attempting uninstall: omero-py
00:10:59 Found existing installation: omero-py 5.23.0
00:11:00 Uninstalling omero-py-5.23.0:
00:11:15 Successfully uninstalled omero-py-5.23.0
00:11:34 Successfully installed omero-py-5.23.1.dev0
00:11:34 + for x in *.tar.gz
00:11:34 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:11:35 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:11:35 Installing build dependencies: started
00:11:36 Installing build dependencies: finished with status 'done'
00:11:36 Getting requirements to build wheel: started
00:11:37 Getting requirements to build wheel: finished with status 'done'
00:11:37 Preparing metadata (pyproject.toml): started
00:11:37 Preparing metadata (pyproject.toml): finished with status 'done'
00:11:37 Building wheels for collected packages: omero-scripts
00:11:37 Building wheel for omero-scripts (pyproject.toml): started
00:11:37 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:11:37 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=fbf8e24bf82073cad7496a0d9ec2992c54706d8bb8c94283835ada75ac939f11
00:11:37 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:11:37 Successfully built omero-scripts
00:11:38 Installing collected packages: omero-scripts
00:11:38 Successfully installed omero-scripts-5.10.1.dev0
00:11:39 + for x in *.tar.gz
00:11:39 + pip install -U omero_web-5.33.2.dev0.tar.gz
00:11:39 Processing ./omero_web-5.33.2.dev0.tar.gz
00:11:40 Installing build dependencies: started
00:11:41 Installing build dependencies: finished with status 'done'
00:11:41 Getting requirements to build wheel: started
00:11:41 Getting requirements to build wheel: finished with status 'done'
00:11:41 Preparing metadata (pyproject.toml): started
00:11:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:11:42 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (5.23.1.dev0)
00:11:42 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.2.dev0)
00:11:42 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:11:42 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.2.dev0)
00:11:42 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
00:11:42 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.2.dev0)
00:11:42 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:11:42 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.2.dev0)
00:11:42 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:11:42 Collecting whitenoise>=5.3.0 (from omero-web==5.33.2.dev0)
00:11:43 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:11:43 Collecting gunicorn>=19.3 (from omero-web==5.33.2.dev0)
00:11:43 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB)
00:11:43 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (0.9.2.dev0)
00:11:43 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (12.3.0)
00:11:43 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (2026.3.post1)
00:11:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (4.3.0)
00:11:43 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (26.3)
00:11:43 Collecting importlib-resources (from omero-web==5.33.2.dev0)
00:11:43 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
00:11:43 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
00:11:43 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
00:11:43 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
00:11:43 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB)
00:11:43 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0) (65.5.1)
00:11:43 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0)
00:11:43 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
00:11:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.4.4)
00:11:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.0.0)
00:11:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.4.6)
00:11:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (6.0.3)
00:11:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.6.5)
00:11:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.34.2)
00:11:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.5.1)
00:11:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.19)
00:11:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.7.0)
00:11:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2026.7.22)
00:11:43 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:11:43 Using cached django-5.2.17-py3-none-any.whl (8.3 MB)
00:11:43 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
00:11:44 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:11:44 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:11:44 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB)
00:11:44 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB)
00:11:44 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:11:44 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
00:11:44 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
00:11:44 Building wheels for collected packages: omero-web
00:11:44 Building wheel for omero-web (pyproject.toml): started
00:11:45 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:11:45 Created wheel for omero-web: filename=omero_web-5.33.2.dev0-py3-none-any.whl size=2821672 sha256=365982eb435252ff06582ac2f71a48b69e97f7cc11b65dadaef8463275b8889f
00:11:45 Stored in directory: /home/omero/.cache/pip/wheels/fa/8a/56/2d65bd15d81cf391163d964dfe77b84f76dd1b0ce6f0ee9292
00:11:45 Successfully built omero-web
00:11:45 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:12:59
00:12:59 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.2.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0
00:12:59 + omero config set omero.db.name OMERO-server
00:13:08 + omero config set omero.db.host pg
00:13:14 + omero config set omero.db.user postgres
00:13:20 + omero config set omero.data.dir /home/omero/omero-server-data
00:13:26 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:13:32 + omero config set omero.db.poolsize 25
00:13:38 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:13:45 + omero config set omero.security.trustStorePassword changeit
00:13:50 + omero config set omero.mail.config true
00:13:55 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:14:02 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:14:08 + omero certificates
00:14:13 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
00:14:13 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:14:14 + '[' false = true ']'
00:14:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:14:14 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:14:14 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:14:14 2026-09-12 00:14:14,460 [ omego.db] DEBUG dbcommand => upgrade
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG dbhost => localhost
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG dbname => OMERO-server
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG dbpass => omero
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG dbuser => omero
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG rootpass => omero
00:14:14 2026-09-12 00:14:14,461 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:14:14 2026-09-12 00:14:14,462 [omego.extern] INFO Executing : omero version
00:14:19 OMERO.py version:
00:14:19 OMERO.server version:
00:14:19 5.6.3-677-fc0ad25e3d-ice36-b75
00:14:19 5.23.1.dev0
00:14:20 2026-09-12 00:14:20,351 [omego.extern] INFO Completed [5.889 s]
00:14:20 2026-09-12 00:14:20,351 [omego.extern] DEBUG Using omero CLI from omero
00:14:20 2026-09-12 00:14:20,351 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:14:20 2026-09-12 00:14:20,351 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:14:20 2026-09-12 00:14:20,351 [omego.extern] INFO Executing : omero config get --show-password
00:14:26 2026-09-12 00:14:26,736 [omego.extern] INFO Completed [6.385 s]
00:14:26 2026-09-12 00:14:26,737 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:14:26 2026-09-12 00:14:26,737 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:14:26 2026-09-12 00:14:26,814 [omego.extern] INFO Completed [0.077 s]
00:14:26 2026-09-12 00:14:26,814 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
00:14:26 2026-09-12 00:14:26,814 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
00:14:26
00:14:26 2026-09-12 00:14:26,814 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:14:26 2026-09-12 00:14:26,814 [omego.extern] INFO Executing : omero config get --show-password
00:14:33 2026-09-12 00:14:33,011 [omego.extern] INFO Completed [6.197 s]
00:14:33 2026-09-12 00:14:33,011 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:14:33 2026-09-12 00:14:33,011 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:14:33 2026-09-12 00:14:33,142 [omego.extern] INFO Completed [0.130 s]
00:14:33 2026-09-12 00:14:33,142 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:14:33 2026-09-12 00:14:33,142 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:14:33 2026-09-12 00:14:33,142 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:14:33 2026-09-12 00:14:33,142 [omego.extern] INFO Executing : omero config get --show-password
00:14:38 2026-09-12 00:14:38,023 [omego.extern] INFO Completed [4.881 s]
00:14:38 2026-09-12 00:14:38,023 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:14:38 2026-09-12 00:14:38,023 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:14:38 2026-09-12 00:14:38,109 [omego.extern] INFO Completed [0.086 s]
00:14:38 2026-09-12 00:14:38,109 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:14:38 2026-09-12 00:14:38,109 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:14:38 2026-09-12 00:14:38,180 [ omego.db] INFO Database is already at OMERO5.4__0
00:14:38 + export LANG=en_US.UTF-8
00:14:38 + LANG=en_US.UTF-8
00:14:38 + export LANGUAGE=en_US:en
00:14:38 + LANGUAGE=en_US:en
00:14:38 + export LC_ALL=en_US.UTF-8
00:14:38 + LC_ALL=en_US.UTF-8
00:14:38 + BUILD_ID=DONT_KILL_ME
00:14:38 + omero admin start
00:14:54 No descriptor given. Using etc/grid/default.xml
00:15:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:15:11 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:15:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:15:11 Waiting on startup. Use CTRL-C to exit
00:15:12 + omero admin waitup
00:15:21 Waiting on startup. Use CTRL-C to exit
00:15:22 + omero admin diagnostics
00:15:28
00:15:28 ================================================================================
00:15:28 OMERO Diagnostics (admin)
00:15:28 ================================================================================
00:15:28
00:15:28 Commands: java -version 21.0.12 (/usr/bin/java)
00:15:28 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:15:28 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:15:28 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:15:28 Commands: psql --version 16.14 (/usr/bin/psql)
00:15:28 Commands: openssl version 3.5.527 (/usr/bin/openssl)
00:15:28
00:15:28 Component: OMERO.py 5.23.1.dev0
00:15:28 Component: OMERO.server 5.6.3-677-fc0ad25e3d-ice36-b75
00:15:28
00:15:28 Server: icegridnode running
00:15:28 Server: Blitz-0 active (pid = 11546, enabled)
00:15:28 Server: Indexer-0 active (pid = 11564, enabled)
00:15:28 Server: OMERO.Glacier2 active (pid = 11569, enabled)
00:15:28 Server: OMERO.IceStorm active (pid = 11596, enabled)
00:15:28 Server: Processor-0 active (pid = 11586, enabled)
00:15:28 Server: Tables-0 active (pid = 11595, enabled)
00:15:28
00:15:28 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:15:28 Log files: Blitz-0.log 32.4 KB errors=0 warnings=1
00:15:28 Log files: DropBox.log n/a
00:15:28 Log files: FileServer.log n/a
00:15:28 Log files: Indexer-0.log 2.6 KB
00:15:28 Log files: MonitorServer.log n/a
00:15:28 Log files: Processor-0.log 856 B
00:15:28 Log files: Tables-0.log 1.1 KB
00:15:28 Log files: TestDropBox.log n/a
00:15:28 Log files: master.err empty
00:15:28 Log files: master.out 30.7 KB
00:15:28 Log files: Total size 0.07 MB
00:15:28
00:15:28
00:15:28 Environment:OMERO_HOME=(unset)
00:15:28 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:15:28 Environment:OMERO_NODE=(unset)
00:15:28 Environment:OMERO_MASTER=(unset)
00:15:28 Environment:OMERO_USERDIR=(unset)
00:15:28 Environment:OMERO_TMPDIR=(unset)
00:15:28 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:15:28 Environment:PYTHONPATH=(unset)
00:15:28 Environment:ICE_HOME=/opt/ice-3.6.5
00:15:28 Environment:LD_LIBRARY_PATH=(unset)
00:15:28 Environment:DYLD_LIBRARY_PATH=(unset)
00:15:29
00:15:29 OMERO SSL port:4064
00:15:29 OMERO TCP port:4063
00:15:29 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:15:29 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:15:29
00:15:29 JVM settings: Blitz-${index} -Xmx5007m
00:15:29 JVM settings: Indexer-${index} -Xmx3338m
00:15:29 JVM settings: PixelData-${index} -Xmx5007m
00:15:29 JVM settings: Repository-${index} -Xmx3338m
00:15:29
00:15:29 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:15:29 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:15:29 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:15:29 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:15:29 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:15:29 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:15:29 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:15:29 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:15:29 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:15:29 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:15:29 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:15:29 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398
00:15:29 + deactivate
00:15:29 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:15:29 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:15:29 + export PATH
00:15:29 + unset _OLD_VIRTUAL_PATH
00:15:29 + '[' -n '' ']'
00:15:29 + hash -r
00:15:29 + '[' -n '' ']'
00:15:29 + unset VIRTUAL_ENV
00:15:29 + unset VIRTUAL_ENV_PROMPT
00:15:29 + '[' '!' '' = nondestructive ']'
00:15:29 + unset -f deactivate
00:15:30 Finished: SUCCESS
