23:48:16 Started by upstream project "Trigger" build number 95
23:48:16 originally caused by:
23:48:16 Started by timer
23:48:16 Running as SYSTEM
23:48:16 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
23:48:16 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14269503288700499059.sh
23:48:17 + source /home/settings.env
23:48:17 ++ OMERO_DB_HOST=pg
23:48:17 ++ OMERO_DB_USER=postgres
23:48:17 ++ OMERO_DB_PASS=
23:48:17 ++ OMERO_ROOT_PASS=omero
23:48:17 ++ OMERO_DATA_DIR=/OMERO
23:48:17 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:48:17 + OMERO_DB_NAME=OMERO-server
23:48:17 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
23:48:17 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:48:17 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:48:17 + OMERO_DATA_DIR=/home/omero/omero-server-data
23:48:17 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
23:48:17 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
23:48:17 ++ deactivate nondestructive
23:48:17 ++ '[' -n '' ']'
23:48:17 ++ '[' -n '' ']'
23:48:17 ++ hash -r
23:48:17 ++ '[' -n '' ']'
23:48:17 ++ unset VIRTUAL_ENV
23:48:17 ++ unset VIRTUAL_ENV_PROMPT
23:48:17 ++ '[' '!' nondestructive = nondestructive ']'
23:48:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
23:48:17 ++ export VIRTUAL_ENV
23:48:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:17 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:17 ++ export PATH
23:48:17 ++ '[' -n '' ']'
23:48:17 ++ '[' -z '' ']'
23:48:17 ++ _OLD_VIRTUAL_PS1=
23:48:17 ++ PS1='(.venv3) '
23:48:17 ++ export PS1
23:48:17 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
23:48:17 ++ export VIRTUAL_ENV_PROMPT
23:48:17 ++ hash -r
23:48:17 + omero admin stop
23:48:42 Waiting on shutdown. Use CTRL-C to exit
23:48:42 .+ sleep 5
23:48:57 + deactivate
23:48:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
23:48:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:48:57 + export PATH
23:48:57 + unset _OLD_VIRTUAL_PATH
23:48:57 + '[' -n '' ']'
23:48:57 + hash -r
23:48:57 + '[' -n '' ']'
23:48:57 + unset VIRTUAL_ENV
23:48:57 + unset VIRTUAL_ENV_PROMPT
23:48:57 + '[' '!' '' = nondestructive ']'
23:48:57 + unset -f deactivate
23:48:57 + rm -rf /home/omero/workspace/OMERO-server/.venv3
23:51:44 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
23:52:04 + '[' false = true ']'
23:52:04 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
23:52:04 Skipping PURGE_DATA:CleanDbAndRepo
23:52:04 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
23:52:14 Copied 1 artifact from "OMERO-build" build number 77
23:52:14 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 68
23:52:14 Copied 2 artifacts from "OMERO-build-build" build number 79
23:52:15 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5027958850909335113.sh
23:52:15 + source /home/settings.env
23:52:15 ++ OMERO_DB_HOST=pg
23:52:15 ++ OMERO_DB_USER=postgres
23:52:15 ++ OMERO_DB_PASS=
23:52:15 ++ OMERO_ROOT_PASS=omero
23:52:15 ++ OMERO_DATA_DIR=/OMERO
23:52:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:52:15 + OMERO_DB_NAME=OMERO-server
23:52:15 + OMERO_DATA_DIR=/home/omero/omero-server-data
23:52:15 + mkdir -p /home/omero/omero-server-data
23:52:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
23:52:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:52:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
23:52:15 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
23:52:15 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
23:52:15 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
23:52:15 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
23:52:15 ++ ls OMERO.server-5.6.3-677-873c99f309-ice36-b77.zip
23:52:15 + ZIP=OMERO.server-5.6.3-677-873c99f309-ice36-b77.zip
23:52:15 + '[' '!' -z '' ']'
23:52:15 + DIST=OMERO.server-5.6.3-677-873c99f309-ice36-b77
23:52:15 + unzip OMERO.server-5.6.3-677-873c99f309-ice36-b77.zip
23:52:15 Archive: OMERO.server-5.6.3-677-873c99f309-ice36-b77.zip
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/blitz/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/grid/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/profiles/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/error/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/grid/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/janelia/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/matplotlib/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/ncsa_paledit/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/seaborn/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/luts/wcif/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/analysis_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/annotation_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/export_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/figure_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/import_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/scripts/omero/util_scripts/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/misc/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__1/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__10/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__11/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__2/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__3/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__4/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__5/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__6/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__7/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__8/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__9/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__4/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__5/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__6/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__7/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.1__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.2__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.2__0/t/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.3__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.4__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.0__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.1__1/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.2__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__1/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__2/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__3/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/var/
23:52:15 creating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/var/tmp/
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/LICENSE.txt
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/backup.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/blitz/mail-senders.example
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/blitz/mail-server.example
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/build.properties
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/env.bat
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/env.sh
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/hibernate.properties
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/ice.config
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/logback-cli.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/logback-indexing-cli.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/logback-indexing.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/logback.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/mime.types
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/node1.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/node2.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/omero.properties
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/profiles/psql
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/rollover.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/Windows.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/error/maintainance.html
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/grid/README
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/grid/default.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/grid/templates.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/grid/windefault.xml
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/ice.config
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/internal.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/master.cfg
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/templates/robot.template
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/etc/testdropbox.config
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/history.rst
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/OMEZarrReader.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/accessors-smart.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/activation.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aggdesigner-algorithm.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aircompressor.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/annotations.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/antlr.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aopalliance.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/apache-client.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/apiguardian-api.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/arns.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/asm.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/auth.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/avatica-core.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/avatica-metrics.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-core.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-java-sdk-core.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-java-sdk-kms.jar
23:52:15 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-java-sdk-s3.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-query-protocol.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/aws-xml-protocol.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/base.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-anim.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-awt-util.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-bridge.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-codec.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-constants.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-css.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-dom.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-ext.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-gvt.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-i18n.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-parser.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-script.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-shared-resources.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-svg-dom.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-svggen.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-transcoder.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-util.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/batik-xml.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/blosc-java.jar
23:52:16 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/client/btm.jar
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23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/xmlgraphics-commons.jar
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/xmpcore.jar
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/xpp3.jar
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/zarr-java.jar
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/lib/server/zstd-jni.jar
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/README
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/agpl.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/antlr.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/apache-v1.1.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/apache-v2.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/asm.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/bouncy_castle_license.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/bsd.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/cddl-v1.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/cpl-v10.html
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/crystalclear.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/django.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/dom4j.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/epl-v1.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/fbsd.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/freemarker.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/gpl-v2.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/gpl.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/gtest.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/iconsweets_license.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/jamon.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/jmock.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/jquery.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/jtidy.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/lgpl-3.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/lgpl-v2.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/lgpl-v2.1.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/lgpl-v3.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/lgpl.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/matplotlib.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/mit.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/mpl-v1_0.htm
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/npl-1_1.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/path.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/pil.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/postgresql.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/psf-v2.0.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/psf-v2.5.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/scons.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/slf4j.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/tablelayout.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/which.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/zlib-libpng.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/share/licenses/zpl-v2.1.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/README.txt
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/misc/Makefile
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/misc/current.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/misc/enums.py
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__1/OMERO3__7.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__10/OMERO3A__9.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__11/OMERO3A__10.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__11/OMERO3A__5.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__2/OMERO3A__1.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__3/OMERO3A__2.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__3/OMERO3__5.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__4/OMERO3A__3.sql
23:52:32 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__4/OMERO3__5.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__5/OMERO3A__4.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__6/OMERO3A__5.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__7/OMERO3A__6.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__8/OMERO3A__6.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3A__9/OMERO3A__8.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__4/OMERO3__1.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__5/OMERO3__4.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__6/OMERO3__5.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO3__7/OMERO3__6.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.1__0/OMERO4__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO4__0/OMERO3A__11.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/psql-footer.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/psql-header.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/schema.sql
23:52:33 inflating: OMERO.server-5.6.3-677-873c99f309-ice36-b77/sql/psql/OMERO5.4__0/views.sql
23:52:33 + rm -f OMERO.server-5.6.3-677-873c99f309-ice36-b77.zip
23:52:33 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-677-873c99f309-ice36-b77 /home/omero/workspace/OMERO-server/OMERO.server
23:52:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
23:52:33 ++ deactivate nondestructive
23:52:33 ++ '[' -n '' ']'
23:52:33 ++ '[' -n '' ']'
23:52:33 ++ hash -r
23:52:33 ++ '[' -n '' ']'
23:52:33 ++ unset VIRTUAL_ENV
23:52:33 ++ unset VIRTUAL_ENV_PROMPT
23:52:33 ++ '[' '!' nondestructive = nondestructive ']'
23:52:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
23:52:33 ++ export VIRTUAL_ENV
23:52:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:52:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:52:33 ++ export PATH
23:52:33 ++ '[' -n '' ']'
23:52:33 ++ '[' -z '' ']'
23:52:33 ++ _OLD_VIRTUAL_PS1=
23:52:33 ++ PS1='(.venv3) '
23:52:33 ++ export PS1
23:52:33 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
23:52:33 ++ export VIRTUAL_ENV_PROMPT
23:52:33 ++ hash -r
23:52:33 + pip install -U pip
23:52:34 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
23:52:35 Collecting pip
23:52:35 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
23:52:35 Installing collected packages: pip
23:52:35 Attempting uninstall: pip
23:52:35 Found existing installation: pip 22.3.1
23:52:36 Uninstalling pip-22.3.1:
23:52:36 Successfully uninstalled pip-22.3.1
23:52:49 Successfully installed pip-26.2.1
23:52:49 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
23:52:50 Collecting zeroc-ice==3.6.5
23:52:50 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:52:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.5 MB/s 0:00:02
23:52:53 Installing collected packages: zeroc-ice
23:52:57 Successfully installed zeroc-ice-3.6.5
23:52:57 + pip install markdown
23:52:58 Collecting markdown
23:52:58 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
23:52:58 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
23:52:58 Installing collected packages: markdown
23:52:59 Successfully installed markdown-3.10.3
23:52:59 + pip install reportlab
23:53:00 Collecting reportlab
23:53:00 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB)
23:53:00 Collecting pillow>=9.0.0 (from reportlab)
23:53:01 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
23:53:01 Collecting charset-normalizer (from reportlab)
23:53:01 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB)
23:53:01 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB)
23:53:01 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:53:01 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
23:53:01 Installing collected packages: pillow, charset-normalizer, reportlab
23:53:09
23:53:09 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1
23:53:09 + pip install pyarrow
23:53:10 Collecting pyarrow
23:53:10 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
23:53:10 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB)
23:53:11 Installing collected packages: pyarrow
23:53:22 Successfully installed pyarrow-25.0.1
23:53:22 + pip install omego
23:53:23 Collecting omego
23:53:23 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
23:53:23 Collecting future (from omego)
23:53:23 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
23:53:23 Collecting yaclifw>=0.1.1 (from omego)
23:53:23 Using cached yaclifw-0.2.0-py3-none-any.whl
23:53:23 Collecting six (from yaclifw>=0.1.1->omego)
23:53:23 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
23:53:23 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
23:53:23 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:53:24 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
23:53:24 Installing collected packages: six, future, yaclifw, omego
23:53:29
23:53:29 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
23:53:29 + pip install tables
23:53:30 Collecting tables
23:53:30 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
23:53:31 Collecting numpy>=1.20.0 (from tables)
23:53:31 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
23:53:31 Collecting numexpr>=2.6.2 (from tables)
23:53:31 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
23:53:31 Collecting packaging (from tables)
23:53:31 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
23:53:31 Collecting py-cpuinfo (from tables)
23:53:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
23:53:31 Collecting blosc2>=2.3.0 (from tables)
23:53:31 Using cached blosc2-4.13.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB)
23:53:32 Collecting ndindex (from blosc2>=2.3.0->tables)
23:53:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
23:53:32 Collecting msgpack (from blosc2>=2.3.0->tables)
23:53:32 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
23:53:32 Collecting pydantic (from blosc2>=2.3.0->tables)
23:53:32 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB)
23:53:32 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
23:53:32 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
23:53:32 Collecting rich (from blosc2>=2.3.0->tables)
23:53:32 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
23:53:32 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
23:53:32 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
23:53:33 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB)
23:53:33 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
23:53:33 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
23:53:33 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached idna-3.19-py3-none-any.whl.metadata (9.2 kB)
23:53:33 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
23:53:33 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
23:53:33 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
23:53:33 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
23:53:34 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
23:53:34 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
23:53:34 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
23:53:34 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
23:53:34 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
23:53:34 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
23:53:35 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables)
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23:53:35 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
23:53:35 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB)
23:53:35 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
23:53:35 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
23:53:35 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
23:53:35 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
23:53:35 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
23:53:35 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
23:53:35 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
23:53:35 Using cached blosc2-4.13.0-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
23:53:35 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
23:53:35 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:53:35 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
23:53:35 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
23:53:36 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
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23:53:36 Using cached anyio-4.15.1-py3-none-any.whl (132 kB)
23:53:36 Using cached idna-3.19-py3-none-any.whl (68 kB)
23:53:36 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
23:53:36 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:53:36 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB)
23:53:36 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
23:53:36 Using cached packaging-26.3-py3-none-any.whl (129 kB)
23:53:36 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
23:53:36 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB)
23:53:36 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
23:53:36 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
23:53:36 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB)
23:53:36 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
23:53:37 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB)
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23:53:37 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
23:53:37 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
23:53:37 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
23:54:24
23:54:24 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.13.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.19 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.4 typing_extensions-4.16.0
23:54:24 + pip install jinja2
23:54:25 Collecting jinja2
23:54:26 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
23:54:26 Collecting MarkupSafe>=2.0 (from jinja2)
23:54:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
23:54:26 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
23:54:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
23:54:26 Installing collected packages: MarkupSafe, jinja2
23:54:27
23:54:27 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
23:54:27 + pip install omero-py
23:54:28 Collecting omero-py
23:54:28 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
23:54:28 Collecting appdirs (from omero-py)
23:54:28 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
23:54:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
23:54:28 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
23:54:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
23:54:28 Collecting PyYAML (from omero-py)
23:54:28 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
23:54:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:54:28 Collecting requests (from omero-py)
23:54:28 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
23:54:28 Collecting portalocker (from omero-py)
23:54:29 Downloading portalocker-4.3.1-py3-none-any.whl.metadata (10 kB)
23:54:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1)
23:54:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.19)
23:54:29 Collecting urllib3<3,>=1.26 (from requests->omero-py)
23:54:29 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
23:54:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
23:54:29 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:54:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:54:29 Downloading portalocker-4.3.1-py3-none-any.whl (128 kB)
23:54:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:54:29 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:54:29 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
23:54:29 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
23:54:47
23:54:47 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.1 requests-2.34.2 urllib3-2.7.0
23:54:47 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
23:54:48 Collecting omero-metadata
23:54:48 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-6xbxafh2/omero-metadata_a28980c5a9c4406eb8ccbc7dc1a948a6
23:54:48 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-6xbxafh2/omero-metadata_a28980c5a9c4406eb8ccbc7dc1a948a6
23:54:49 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 1e90243bec13fcd957e2d1ca5b90c95c6110f0bb
23:54:49 Installing build dependencies: started
23:54:50 Installing build dependencies: finished with status 'done'
23:54:50 Getting requirements to build wheel: started
23:54:51 Getting requirements to build wheel: finished with status 'done'
23:54:51 Preparing metadata (pyproject.toml): started
23:54:51 Preparing metadata (pyproject.toml): finished with status 'done'
23:54:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
23:54:51 Collecting pandas<3,>=2 (from omero-metadata)
23:54:51 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
23:54:51 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
23:54:51 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
23:54:51 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
23:54:51 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
23:54:51 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
23:54:51 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
23:54:52 Using cached tzdata-2026.4-py2.py3-none-any.whl.metadata (1.4 kB)
23:54:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
23:54:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
23:54:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
23:54:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
23:54:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
23:54:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
23:54:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.1)
23:54:52 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0)
23:54:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1)
23:54:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.19)
23:54:52 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
23:54:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
23:54:52 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
23:54:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
23:54:52 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
23:54:52 Using cached tzdata-2026.4-py2.py3-none-any.whl (347 kB)
23:54:52 Building wheels for collected packages: omero-metadata
23:54:52 Building wheel for omero-metadata (pyproject.toml): started
23:54:52 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
23:54:52 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=8faabbfb05c94e27909e39f9448cbfbadeb7fa56b214ca7e58ef6e3ebbcc69a2
23:54:52 Stored in directory: /tmp/pip-ephem-wheel-cache-jo00g_l_/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
23:54:52 Successfully built omero-metadata
23:54:52 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
23:55:39
23:55:39 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.4
23:55:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
23:55:40 Collecting omero-cli-render
23:55:40 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-otiai2h7/omero-cli-render_a154da8ecef64c55a1213aea18e00e2f
23:55:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-otiai2h7/omero-cli-render_a154da8ecef64c55a1213aea18e00e2f
23:55:41 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:41 Switched to a new branch 'merge_ci'
23:55:41 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:41 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a90b4505c84566195240bddccb61c7ca5b8bdf5d
23:55:41 Installing build dependencies: started
23:55:42 Installing build dependencies: finished with status 'done'
23:55:42 Getting requirements to build wheel: started
23:55:43 Getting requirements to build wheel: finished with status 'done'
23:55:43 Preparing metadata (pyproject.toml): started
23:55:43 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
23:55:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
23:55:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
23:55:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
23:55:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
23:55:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
23:55:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
23:55:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
23:55:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.1)
23:55:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1)
23:55:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.19)
23:55:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
23:55:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
23:55:43 Building wheels for collected packages: omero-cli-render
23:55:43 Building wheel for omero-cli-render (pyproject.toml): started
23:55:43 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
23:55:43 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=179dbd6d48cbbface0ffc43c8e7c4d7e2c53ac9009d22ae70c77553712fe3d7e
23:55:43 Stored in directory: /tmp/pip-ephem-wheel-cache-w2wzpswv/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
23:55:43 Successfully built omero-cli-render
23:55:43 Installing collected packages: omero-cli-render
23:55:44 Successfully installed omero-cli-render-0.8.2.dev0
23:55:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
23:55:44 Collecting omero-cli-duplicate
23:55:44 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-pxmcqggg/omero-cli-duplicate_723fc68cb23c4c8b92bf71753c18753e
23:55:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-pxmcqggg/omero-cli-duplicate_723fc68cb23c4c8b92bf71753c18753e
23:55:46 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:46 Switched to a new branch 'merge_ci'
23:55:46 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:46 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1ee13a67dade8b72cbc737bb195c2167225f217b
23:55:46 Installing build dependencies: started
23:55:47 Installing build dependencies: finished with status 'done'
23:55:47 Getting requirements to build wheel: started
23:55:47 Getting requirements to build wheel: finished with status 'done'
23:55:47 Preparing metadata (pyproject.toml): started
23:55:48 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
23:55:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
23:55:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
23:55:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
23:55:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
23:55:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
23:55:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
23:55:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
23:55:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.1)
23:55:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1)
23:55:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.19)
23:55:48 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
23:55:48 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
23:55:48 Building wheels for collected packages: omero-cli-duplicate
23:55:48 Building wheel for omero-cli-duplicate (pyproject.toml): started
23:55:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
23:55:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=a516f85ffff8f8e951f09569e8f3925fb7e53ac4e90b2c64518daad63f0bd95c
23:55:48 Stored in directory: /tmp/pip-ephem-wheel-cache-ea3gr6da/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
23:55:48 Successfully built omero-cli-duplicate
23:55:48 Installing collected packages: omero-cli-duplicate
23:55:48 Successfully installed omero-cli-duplicate-0.4.1.dev0
23:55:48 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
23:55:49 Collecting omero-cli-zarr
23:55:49 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-g10usif0/omero-cli-zarr_6bfd6b27f4a449f18390e8ec4ab41da6
23:55:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-g10usif0/omero-cli-zarr_6bfd6b27f4a449f18390e8ec4ab41da6
23:55:50 Running command git checkout -b merge_ci --track origin/merge_ci
23:55:50 Switched to a new branch 'merge_ci'
23:55:50 branch 'merge_ci' set up to track 'origin/merge_ci'.
23:55:50 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 7a6031d6f2c96c974534ba3777dd3c48844e5cb0
23:55:51 Installing build dependencies: started
23:55:52 Installing build dependencies: finished with status 'done'
23:55:52 Getting requirements to build wheel: started
23:55:52 Getting requirements to build wheel: finished with status 'done'
23:55:52 Installing backend dependencies: started
23:55:54 Installing backend dependencies: finished with status 'done'
23:55:54 Preparing metadata (pyproject.toml): started
23:55:54 Preparing metadata (pyproject.toml): finished with status 'done'
23:55:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
23:55:54 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
23:55:54 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
23:55:54 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
23:55:54 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:54 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
23:55:54 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:54 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
23:55:55 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:55 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
23:55:55 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:55 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
23:55:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
23:55:56 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
23:55:56 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
23:55:56 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
23:55:56 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
23:55:56 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
23:55:56 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:56 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB)
23:55:57 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
23:55:57 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
23:55:57 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
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23:55:57 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB)
23:55:57 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB)
23:55:57 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
23:55:57 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:57 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
23:55:58 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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23:55:58 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:58 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
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23:55:58 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.4)
23:55:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
23:55:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
23:55:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
23:55:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
23:55:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.3.1)
23:55:59 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:59 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
23:55:59 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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23:55:59 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:55:59 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
23:55:59 Collecting botocore<1.43.76,>=1.43.66 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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23:56:00 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:56:00 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
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23:56:00 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
23:56:00 Using cached wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
23:56:00 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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23:56:01 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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23:56:01 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
23:56:01 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
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23:56:03 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
23:56:03 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
23:56:03 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
23:56:03 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
23:56:04 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
23:56:04 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
23:56:04 Using cached aiobotocore-3.9.1-py3-none-any.whl (102 kB)
23:56:04 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
23:56:04 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
23:56:04 Using cached botocore-1.43.75-py3-none-any.whl (15.7 MB)
23:56:04 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
23:56:04 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (272 kB)
23:56:04 Using cached wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (226 kB)
23:56:04 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
23:56:04 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
23:56:04 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
23:56:04 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
23:56:04 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
23:56:04 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
23:56:04 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
23:56:04 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
23:56:04 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
23:56:04 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
23:56:05 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
23:56:05 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
23:56:05 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
23:56:05 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
23:56:05 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
23:56:05 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
23:56:05 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
23:56:05 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
23:56:05 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
23:56:05 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
23:56:05 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
23:56:06 Building wheels for collected packages: omero-cli-zarr
23:56:06 Building wheel for omero-cli-zarr (pyproject.toml): started
23:56:06 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
23:56:06 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g7a6031d-py3-none-any.whl size=39539 sha256=b90b7603c6ff883306a0b5d3a18c0c249332eaa7a425af48ab63c6768e1099ac
23:56:06 Stored in directory: /tmp/pip-ephem-wheel-cache-8j754k_c/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
23:56:06 Successfully built omero-cli-zarr
23:56:06 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
23:56:41 Attempting uninstall: pydantic-core
23:56:41 Found existing installation: pydantic_core 2.46.5
23:56:41 Uninstalling pydantic_core-2.46.5:
23:56:41 Successfully uninstalled pydantic_core-2.46.5
23:57:14 Attempting uninstall: pydantic
23:57:14 Found existing installation: pydantic 2.13.5
23:57:14 Uninstalling pydantic-2.13.5:
23:57:14 Successfully uninstalled pydantic-2.13.5
23:57:53
23:57:53 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.1 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.75 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.8.0 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g7a6031d partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.1 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
23:57:54 + pip install omero-certificates
23:57:55 Collecting omero-certificates
23:57:55 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
23:57:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
23:57:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
23:57:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
23:57:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
23:57:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
23:57:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
23:57:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
23:57:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
23:57:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.1)
23:57:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1)
23:57:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.19)
23:57:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
23:57:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
23:57:55 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
23:57:55 Installing collected packages: omero-certificates
23:57:56 Successfully installed omero-certificates-0.4.0
23:57:56 + for x in *.tar.gz
23:57:56 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
23:57:56 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
23:57:56 Installing build dependencies: started
23:57:58 Installing build dependencies: finished with status 'done'
23:57:58 Getting requirements to build wheel: started
23:57:58 Getting requirements to build wheel: finished with status 'done'
23:57:58 Preparing metadata (pyproject.toml): started
23:57:58 Preparing metadata (pyproject.toml): finished with status 'done'
23:57:58 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
23:57:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
23:57:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
23:57:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
23:57:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
23:57:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
23:57:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
23:57:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
23:57:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.1)
23:57:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1)
23:57:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.19)
23:57:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
23:57:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
23:57:58 Building wheels for collected packages: omero-dropbox
23:57:58 Building wheel for omero-dropbox (pyproject.toml): started
23:57:59 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
23:57:59 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=a07c6a671c8e4eec1eef385beac001f69cf971a49021e1a781713eb4370af758
23:57:59 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
23:57:59 Successfully built omero-dropbox
23:57:59 Installing collected packages: omero-dropbox
23:57:59 Successfully installed omero-dropbox-5.7.1.dev0
23:58:00 + for x in *.tar.gz
23:58:00 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
23:58:00 Processing ./omero_marshal-0.9.2.dev0.tar.gz
23:58:00 Installing build dependencies: started
23:58:02 Installing build dependencies: finished with status 'done'
23:58:02 Getting requirements to build wheel: started
23:58:02 Getting requirements to build wheel: finished with status 'done'
23:58:02 Preparing metadata (pyproject.toml): started
23:58:02 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:02 Building wheels for collected packages: omero_marshal
23:58:02 Building wheel for omero_marshal (pyproject.toml): started
23:58:02 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
23:58:02 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=b18dd6bc1ea829414eb792f4eb8521152b9d0ea03e1f29ff940c4935e31d9bb3
23:58:02 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
23:58:02 Successfully built omero_marshal
23:58:03 Installing collected packages: omero_marshal
23:58:05 Successfully installed omero_marshal-0.9.2.dev0
23:58:05 + for x in *.tar.gz
23:58:05 + pip install -U omero_py-5.23.1.dev0.tar.gz
23:58:06 Processing ./omero_py-5.23.1.dev0.tar.gz
23:58:06 Installing build dependencies: started
23:58:07 Installing build dependencies: finished with status 'done'
23:58:07 Getting requirements to build wheel: started
23:58:07 Getting requirements to build wheel: finished with status 'done'
23:58:07 Preparing metadata (pyproject.toml): started
23:58:08 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
23:58:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
23:58:08 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
23:58:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
23:58:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
23:58:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
23:58:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
23:58:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.1)
23:58:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1)
23:58:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.19)
23:58:08 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
23:58:08 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
23:58:08 Building wheels for collected packages: omero-py
23:58:08 Building wheel for omero-py (pyproject.toml): started
23:58:09 Building wheel for omero-py (pyproject.toml): finished with status 'done'
23:58:09 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787190 sha256=43c0fa6d583703be1a20db82259ef3dd1775a790a64409251ee4da8259da494b
23:58:09 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
23:58:09 Successfully built omero-py
23:58:09 Installing collected packages: omero-py
23:58:09 Attempting uninstall: omero-py
23:58:09 Found existing installation: omero-py 5.23.0
23:58:10 Uninstalling omero-py-5.23.0:
23:58:20 Successfully uninstalled omero-py-5.23.0
23:58:36 Successfully installed omero-py-5.23.1.dev0
23:58:36 + for x in *.tar.gz
23:58:36 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
23:58:37 Processing ./omero_scripts-5.10.1.dev0.tar.gz
23:58:37 Installing build dependencies: started
23:58:38 Installing build dependencies: finished with status 'done'
23:58:38 Getting requirements to build wheel: started
23:58:38 Getting requirements to build wheel: finished with status 'done'
23:58:38 Preparing metadata (pyproject.toml): started
23:58:39 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:39 Building wheels for collected packages: omero-scripts
23:58:39 Building wheel for omero-scripts (pyproject.toml): started
23:58:39 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
23:58:39 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=9944a0144cb0b5397a50dd54e608d19879d7a28cea42e9e3ee1d8f89ec2ff393
23:58:39 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
23:58:39 Successfully built omero-scripts
23:58:39 Installing collected packages: omero-scripts
23:58:40 Successfully installed omero-scripts-5.10.1.dev0
23:58:40 + for x in *.tar.gz
23:58:40 + pip install -U omero_web-5.33.2.dev0.tar.gz
23:58:41 Processing ./omero_web-5.33.2.dev0.tar.gz
23:58:41 Installing build dependencies: started
23:58:42 Installing build dependencies: finished with status 'done'
23:58:42 Getting requirements to build wheel: started
23:58:43 Getting requirements to build wheel: finished with status 'done'
23:58:43 Preparing metadata (pyproject.toml): started
23:58:43 Preparing metadata (pyproject.toml): finished with status 'done'
23:58:43 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (5.23.1.dev0)
23:58:43 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.2.dev0)
23:58:43 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
23:58:43 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.2.dev0)
23:58:43 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
23:58:44 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.2.dev0)
23:58:44 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
23:58:44 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.2.dev0)
23:58:44 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
23:58:44 Collecting whitenoise>=5.3.0 (from omero-web==5.33.2.dev0)
23:58:44 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
23:58:44 Collecting gunicorn>=19.3 (from omero-web==5.33.2.dev0)
23:58:44 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB)
23:58:44 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (0.9.2.dev0)
23:58:44 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (12.3.0)
23:58:44 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (2026.3.post1)
23:58:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (4.3.1)
23:58:44 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (26.3)
23:58:44 Collecting importlib-resources (from omero-web==5.33.2.dev0)
23:58:44 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
23:58:44 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
23:58:44 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
23:58:44 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
23:58:44 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB)
23:58:44 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0) (65.5.1)
23:58:45 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0)
23:58:45 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
23:58:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.4.4)
23:58:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.0.0)
23:58:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.4.6)
23:58:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (6.0.3)
23:58:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.6.5)
23:58:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.34.2)
23:58:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.5.1)
23:58:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.19)
23:58:45 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.7.0)
23:58:45 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2026.7.22)
23:58:45 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
23:58:45 Using cached django-5.2.17-py3-none-any.whl (8.3 MB)
23:58:45 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
23:58:45 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
23:58:45 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
23:58:45 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB)
23:58:45 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB)
23:58:45 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
23:58:45 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
23:58:45 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
23:58:45 Building wheels for collected packages: omero-web
23:58:45 Building wheel for omero-web (pyproject.toml): started
23:58:46 Building wheel for omero-web (pyproject.toml): finished with status 'done'
23:58:46 Created wheel for omero-web: filename=omero_web-5.33.2.dev0-py3-none-any.whl size=2821672 sha256=cdfc17eca956aa641d1cb7d59da41300320a3d3bc29d97cbc5c7b1b68051ebe8
23:58:46 Stored in directory: /home/omero/.cache/pip/wheels/fa/8a/56/2d65bd15d81cf391163d964dfe77b84f76dd1b0ce6f0ee9292
23:58:46 Successfully built omero-web
23:58:47 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
23:59:51
23:59:51 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.2.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0
23:59:52 + omero config set omero.db.name OMERO-server
00:00:00 + omero config set omero.db.host pg
00:00:05 + omero config set omero.db.user postgres
00:00:11 + omero config set omero.data.dir /home/omero/omero-server-data
00:00:18 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:00:25 + omero config set omero.db.poolsize 25
00:00:33 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:00:40 + omero config set omero.security.trustStorePassword changeit
00:00:48 + omero config set omero.mail.config true
00:00:56 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:01:03 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:01:10 + omero certificates
00:01:18 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
00:01:18 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:01:18 + '[' false = true ']'
00:01:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:01:18 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:01:18 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:01:18 2026-09-14 00:01:18,891 [ omego.db] DEBUG dbcommand => upgrade
00:01:18 2026-09-14 00:01:18,891 [ omego.db] DEBUG dbhost => localhost
00:01:18 2026-09-14 00:01:18,891 [ omego.db] DEBUG dbname => OMERO-server
00:01:18 2026-09-14 00:01:18,892 [ omego.db] DEBUG dbpass => omero
00:01:18 2026-09-14 00:01:18,892 [ omego.db] DEBUG dbuser => omero
00:01:18 2026-09-14 00:01:18,892 [ omego.db] DEBUG rootpass => omero
00:01:18 2026-09-14 00:01:18,892 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:01:18 2026-09-14 00:01:18,892 [omego.extern] INFO Executing : omero version
00:01:24 OMERO.py version:
00:01:24 OMERO.server version:
00:01:24 5.6.3-677-873c99f309-ice36-b77
00:01:24 5.23.1.dev0
00:01:25 2026-09-14 00:01:25,326 [omego.extern] INFO Completed [6.433 s]
00:01:25 2026-09-14 00:01:25,326 [omego.extern] DEBUG Using omero CLI from omero
00:01:25 2026-09-14 00:01:25,326 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:01:25 2026-09-14 00:01:25,326 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:25 2026-09-14 00:01:25,326 [omego.extern] INFO Executing : omero config get --show-password
00:01:32 2026-09-14 00:01:32,870 [omego.extern] INFO Completed [7.544 s]
00:01:32 2026-09-14 00:01:32,870 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:32 2026-09-14 00:01:32,870 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:01:33 2026-09-14 00:01:33,034 [omego.extern] INFO Completed [0.164 s]
00:01:33 2026-09-14 00:01:33,034 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
00:01:33 2026-09-14 00:01:33,034 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
00:01:33
00:01:33 2026-09-14 00:01:33,034 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:33 2026-09-14 00:01:33,034 [omego.extern] INFO Executing : omero config get --show-password
00:01:39 2026-09-14 00:01:39,733 [omego.extern] INFO Completed [6.699 s]
00:01:39 2026-09-14 00:01:39,733 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:39 2026-09-14 00:01:39,733 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:01:39 2026-09-14 00:01:39,753 [omego.extern] INFO Completed [0.020 s]
00:01:39 2026-09-14 00:01:39,754 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:01:39 2026-09-14 00:01:39,754 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:01:39 2026-09-14 00:01:39,754 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:01:39 2026-09-14 00:01:39,754 [omego.extern] INFO Executing : omero config get --show-password
00:01:47 2026-09-14 00:01:47,205 [omego.extern] INFO Completed [7.451 s]
00:01:47 2026-09-14 00:01:47,205 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:01:47 2026-09-14 00:01:47,205 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:01:47 2026-09-14 00:01:47,586 [omego.extern] INFO Completed [0.381 s]
00:01:47 2026-09-14 00:01:47,586 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:01:47 2026-09-14 00:01:47,586 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:01:47 2026-09-14 00:01:47,633 [ omego.db] INFO Database is already at OMERO5.4__0
00:01:47 + export LANG=en_US.UTF-8
00:01:47 + LANG=en_US.UTF-8
00:01:47 + export LANGUAGE=en_US:en
00:01:47 + LANGUAGE=en_US:en
00:01:47 + export LC_ALL=en_US.UTF-8
00:01:47 + LC_ALL=en_US.UTF-8
00:01:47 + BUILD_ID=DONT_KILL_ME
00:01:47 + omero admin start
00:02:03 No descriptor given. Using etc/grid/default.xml
00:02:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:02:16 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:02:16 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:02:16 Waiting on startup. Use CTRL-C to exit
00:02:17 + omero admin waitup
00:02:25 Waiting on startup. Use CTRL-C to exit
00:02:26 + omero admin diagnostics
00:02:32
00:02:32 ================================================================================
00:02:32 OMERO Diagnostics (admin)
00:02:32 ================================================================================
00:02:32
00:02:32 Commands: java -version 21.0.12 (/usr/bin/java)
00:02:32 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:02:32 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:02:32 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:02:32 Commands: psql --version 16.14 (/usr/bin/psql)
00:02:32 Commands: openssl version 3.5.527 (/usr/bin/openssl)
00:02:32
00:02:32 Component: OMERO.py 5.23.1.dev0
00:02:32 Component: OMERO.server 5.6.3-677-873c99f309-ice36-b77
00:02:32
00:02:32 Server: icegridnode running
00:02:32 Server: Blitz-0 active (pid = 21276, enabled)
00:02:32 Server: Indexer-0 active (pid = 21294, enabled)
00:02:32 Server: OMERO.Glacier2 active (pid = 21299, enabled)
00:02:32 Server: OMERO.IceStorm active (pid = 21325, enabled)
00:02:32 Server: Processor-0 active (pid = 21324, enabled)
00:02:32 Server: Tables-0 active (pid = 21315, enabled)
00:02:32
00:02:32 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:02:32 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1
00:02:32 Log files: DropBox.log n/a
00:02:32 Log files: FileServer.log n/a
00:02:32 Log files: Indexer-0.log 2.6 KB
00:02:32 Log files: MonitorServer.log n/a
00:02:32 Log files: Processor-0.log 856 B
00:02:32 Log files: Tables-0.log 1.1 KB
00:02:32 Log files: TestDropBox.log n/a
00:02:32 Log files: master.err empty
00:02:32 Log files: master.out 30.7 KB
00:02:32 Log files: Total size 0.07 MB
00:02:32
00:02:32
00:02:32 Environment:OMERO_HOME=(unset)
00:02:32 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:02:32 Environment:OMERO_NODE=(unset)
00:02:32 Environment:OMERO_MASTER=(unset)
00:02:32 Environment:OMERO_USERDIR=(unset)
00:02:32 Environment:OMERO_TMPDIR=(unset)
00:02:32 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:02:32 Environment:PYTHONPATH=(unset)
00:02:32 Environment:ICE_HOME=/opt/ice-3.6.5
00:02:32 Environment:LD_LIBRARY_PATH=(unset)
00:02:32 Environment:DYLD_LIBRARY_PATH=(unset)
00:02:32
00:02:32 OMERO SSL port:4064
00:02:32 OMERO TCP port:4063
00:02:32 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:02:32 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:02:32
00:02:32 JVM settings: Blitz-${index} -Xmx5007m
00:02:32 JVM settings: Indexer-${index} -Xmx3338m
00:02:32 JVM settings: PixelData-${index} -Xmx5007m
00:02:32 JVM settings: Repository-${index} -Xmx3338m
00:02:32
00:02:32 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:32 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:32 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:02:32 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:02:32 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:02:32 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:02:32 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:02:32 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:02:32 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:02:32 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:02:32 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:02:32 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.0-rc3 4c6a6c7d8fb12449c8080808fd12bf95e996e398
00:02:33 + deactivate
00:02:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:02:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:02:33 + export PATH
00:02:33 + unset _OLD_VIRTUAL_PATH
00:02:33 + '[' -n '' ']'
00:02:33 + hash -r
00:02:33 + '[' -n '' ']'
00:02:33 + unset VIRTUAL_ENV
00:02:33 + unset VIRTUAL_ENV_PROMPT
00:02:33 + '[' '!' '' = nondestructive ']'
00:02:33 + unset -f deactivate
00:02:33 Finished: SUCCESS
